AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374200 MtrunA17_Chr4g0000061 98.004 501 8 1 1 501 1 499 0.0 988
Msa1374200 MtrunA17_Chr2g0319001 28.132 455 276 17 56 496 106 523 2.19e-31 127
Msa1374200 MtrunA17_Chr4g0042131 27.059 425 251 16 88 501 44 420 5.49e-27 113
Msa1374200 MtrunA17_Chr2g0319011 27.044 318 185 14 185 491 27 308 1.21e-19 89.7
Msa1374200 MtrunA17_Chr8g0356471 26.190 462 270 18 58 501 112 520 6.17e-19 89.7
Msa1374200 MtrunA17_Chr5g0432581 22.318 466 293 15 59 490 47 477 1.67e-17 85.1
Msa1374200 MtrunA17_Chr4g0021771 24.138 464 271 18 59 490 83 497 7.54e-17 83.2
Msa1374200 MtrunA17_Chr4g0036021 24.018 433 275 15 83 490 79 482 1.85e-15 79.0
Msa1374200 MtrunA17_Chr8g0373531 22.926 458 300 15 59 490 47 477 2.17e-15 78.6
Msa1374200 MtrunA17_Chr2g0303731 25.856 263 183 7 7 261 1 259 8.84e-15 77.0
Msa1374200 MtrunA17_Chr1g0186831 23.404 517 302 23 30 488 20 500 1.41e-14 76.3
Msa1374200 MtrunA17_Chr8g0390521 24.213 413 240 13 59 440 46 416 5.01e-14 74.3
Msa1374200 MtrunA17_Chr8g0376611 28.372 215 146 5 71 281 2 212 1.69e-13 72.8
Msa1374200 MtrunA17_Chr3g0144361 22.294 462 298 12 59 490 56 486 2.05e-13 72.4
Msa1374200 MtrunA17_Chr7g0250881 26.761 213 135 6 70 272 106 307 2.86e-13 72.0
Msa1374200 MtrunA17_Chr6g0485661 22.388 402 260 11 59 440 86 455 1.52e-12 69.7
Msa1374200 MtrunA17_Chr4g0004821 28.643 199 118 5 70 259 77 260 1.79e-12 69.3
Msa1374200 MtrunA17_Chr1g0213631 29.167 168 115 3 91 255 48 214 2.15e-12 68.9
Msa1374200 MtrunA17_Chr4g0034681 22.936 436 287 14 82 494 81 490 3.85e-12 68.6
Msa1374200 MtrunA17_Chr5g0434231 30.625 160 87 3 71 229 5 141 4.03e-12 64.3
Msa1374200 MtrunA17_Chr6g0486021 27.650 217 132 6 58 264 79 280 5.74e-12 67.8
Msa1374200 MtrunA17_Chr8g0376631 27.638 199 132 7 89 281 87 279 1.00e-11 67.4
Msa1374200 MtrunA17_Chr7g0214451 28.144 167 116 3 89 252 94 259 2.74e-11 65.9
Msa1374200 MtrunA17_Chr7g0259471 26.368 201 143 3 58 257 67 263 3.56e-11 65.5
Msa1374200 MtrunA17_Chr2g0284271 63.636 44 16 0 437 480 1 44 3.68e-11 58.2
Msa1374200 MtrunA17_Chr2g0282031 24.631 203 139 4 59 257 81 273 4.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374200 AT3G13050.2 66.734 493 159 4 10 497 2 494 0.0 606
Msa1374200 AT3G13050.4 66.734 493 159 4 10 497 2 494 0.0 606
Msa1374200 AT3G13050.1 66.734 493 159 4 10 497 2 494 0.0 606
Msa1374200 AT3G13050.3 66.734 493 159 4 10 497 2 494 0.0 606
Msa1374200 AT3G20660.1 26.007 546 298 20 5 499 24 514 4.43e-32 129
Msa1374200 AT3G18830.1 22.951 427 291 10 82 490 87 493 4.12e-17 84.7
Msa1374200 AT2G16130.1 24.464 466 289 15 59 493 54 487 1.70e-16 82.4
Msa1374200 AT1G67300.2 25.781 384 226 10 70 437 92 432 7.39e-16 80.5
Msa1374200 AT2G16120.1 24.406 463 287 15 59 490 54 484 1.37e-15 79.7
Msa1374200 AT1G73220.1 23.207 474 284 17 53 501 113 531 1.54e-15 79.7
Msa1374200 AT1G67300.1 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa1374200 AT1G67300.3 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa1374200 AT1G67300.6 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa1374200 AT1G67300.7 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa1374200 AT1G67300.4 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa1374200 AT1G67300.5 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa1374200 AT1G79820.3 28.740 254 142 9 70 311 95 321 1.21e-14 76.6
Msa1374200 AT1G79820.2 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa1374200 AT1G79820.1 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa1374200 AT1G79820.4 28.780 205 121 6 70 264 95 284 5.48e-14 74.3
Msa1374200 AT2G20780.1 24.318 440 252 18 82 490 106 495 8.22e-14 74.3
Msa1374200 AT2G20780.2 24.318 440 252 18 82 490 48 437 9.63e-14 73.9
Msa1374200 AT1G79360.1 25.053 475 266 19 58 499 98 515 1.33e-13 73.6
Msa1374200 AT1G79410.1 24.086 465 279 18 54 500 99 507 1.79e-13 73.2
Msa1374200 AT1G76430.1 19.963 536 326 15 30 498 18 517 4.41e-13 72.0
Msa1374200 AT1G16390.1 25.821 457 260 18 58 493 106 504 4.62e-12 68.6
Msa1374200 AT5G43360.1 21.639 476 271 19 30 444 20 454 5.44e-12 68.6
Msa1374200 AT5G16150.2 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa1374200 AT5G16150.1 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa1374200 AT5G16150.3 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa1374200 AT2G18480.1 23.846 390 232 14 82 440 73 428 3.94e-11 65.9

Find 143 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGATTCATTCAACTTTC+TGG 0.126827 tig0019471:-4882 Msa1374200:five_prime_UTR
AAGGGTTGACCTTGATAATT+TGG 0.146854 tig0019471:+2185 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 tig0019471:-2176 Msa1374200:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 tig0019471:-866 Msa1374200:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 tig0019471:+2072 None:intergenic
AAATGAACATGGTTAATTTA+AGG 0.189180 tig0019471:-510 Msa1374200:three_prime_UTR
AAAGGAATGATTTCTAATTT+AGG 0.203260 tig0019471:-2240 Msa1374200:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 tig0019471:+4290 None:intergenic
CGAAGTTACCTTTGATGATT+TGG 0.234261 tig0019471:+476 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 tig0019471:+807 None:intergenic
CCATTCAAGTATATGGAATA+TGG 0.273352 tig0019471:+4779 None:intergenic
GTACGTACCATTCAAGTATA+TGG 0.276122 tig0019471:+4772 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 tig0019471:-4590 Msa1374200:CDS
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 tig0019471:-4260 Msa1374200:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 tig0019471:-4261 Msa1374200:CDS
GCTCTTATAACATTAGGTTT+TGG 0.301990 tig0019471:-4584 Msa1374200:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 tig0019471:+2337 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 tig0019471:-2403 Msa1374200:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 tig0019471:+1805 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 tig0019471:-4266 Msa1374200:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 tig0019471:-2381 Msa1374200:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 tig0019471:+2243 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 tig0019471:+1797 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 tig0019471:+2432 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 tig0019471:+1823 None:intergenic
TTCATTGATTCATTCCAGTT+TGG 0.358871 tig0019471:+4937 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 tig0019471:+1785 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 tig0019471:+2166 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 tig0019471:+4191 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 tig0019471:+2046 None:intergenic
AATGTGTGCGAACGAATAAT+TGG 0.388296 tig0019471:+598 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 tig0019471:+4291 None:intergenic
TGTGCACTAGTAATTTGTTC+TGG 0.396713 tig0019471:+707 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 tig0019471:-2175 Msa1374200:CDS
ATGATGTTACTCTCATTTGT+AGG 0.412623 tig0019471:-4500 Msa1374200:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 tig0019471:-830 Msa1374200:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 tig0019471:+2186 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 tig0019471:-2532 Msa1374200:intron
CACAGTTCTTGAGGAAGAAA+AGG 0.428597 tig0019471:-688 Msa1374200:three_prime_UTR
TCGTTTACGCCGGCATTGGT+TGG 0.434274 tig0019471:-4541 Msa1374200:CDS
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 tig0019471:-962 Msa1374200:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 tig0019471:-4403 Msa1374200:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 tig0019471:-4254 Msa1374200:CDS
TCGTCGTCAACTTACCAAAC+TGG 0.447014 tig0019471:-4951 None:intergenic
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 tig0019471:-831 Msa1374200:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 tig0019471:+4476 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 tig0019471:+2441 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 tig0019471:-4368 Msa1374200:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 tig0019471:+1824 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 tig0019471:+2047 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 tig0019471:+2193 None:intergenic
GTAAGCACCAATTAACATTC+CGG 0.476951 tig0019471:+4409 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 tig0019471:+2482 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 tig0019471:-4656 Msa1374200:intron
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 tig0019471:+814 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 tig0019471:-4402 Msa1374200:CDS
GTTCTCGTTTACGCCGGCAT+TGG 0.492913 tig0019471:-4545 Msa1374200:CDS
AAAAGGAGAGGGAAGAAGTT+CGG 0.496639 tig0019471:-671 Msa1374200:three_prime_UTR
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 tig0019471:+2424 None:intergenic
TTCTGAAATCCAACCAATGC+CGG 0.499012 tig0019471:+4532 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 tig0019471:-2194 Msa1374200:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 tig0019471:+2073 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 tig0019471:-1808 Msa1374200:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 tig0019471:-2432 Msa1374200:CDS
CCATATTCCATATACTTGAA+TGG 0.516463 tig0019471:-4779 Msa1374200:intron
TGGTTGGATTTCAGAAGCAA+TGG 0.517985 tig0019471:-4525 Msa1374200:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 tig0019471:-959 Msa1374200:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 tig0019471:+2519 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 tig0019471:-4203 Msa1374200:CDS
TGAACATGGTTAATTTAAGG+AGG 0.535787 tig0019471:-507 Msa1374200:three_prime_UTR
GCTACTGTTACTGCTACTGC+CGG 0.538066 tig0019471:-4332 Msa1374200:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 tig0019471:+2481 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 tig0019471:+824 None:intergenic
TTACTAGTGCACAGTTCTTG+AGG 0.540007 tig0019471:-697 Msa1374200:three_prime_UTR
TATGAAACTTTCTTGATGAG+AGG 0.540801 tig0019471:+4448 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 tig0019471:-4196 Msa1374200:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 tig0019471:-971 Msa1374200:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 tig0019471:+2294 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 tig0019471:-4257 Msa1374200:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 tig0019471:+2477 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 tig0019471:-942 Msa1374200:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 tig0019471:-932 Msa1374200:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 tig0019471:+4178 None:intergenic
GATAGAATGTTAATGGGAGA+AGG 0.555946 tig0019471:+1830 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 tig0019471:-2258 Msa1374200:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 tig0019471:-2237 Msa1374200:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 tig0019471:+1897 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 tig0019471:+976 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 tig0019471:+4197 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 tig0019471:-933 Msa1374200:CDS
CAATGAAAATAAAATGAACA+TGG 0.569553 tig0019471:-521 Msa1374200:three_prime_UTR
CTCCCAAACCAAGACCAACA+AGG 0.572336 tig0019471:+4258 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 tig0019471:+4230 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 tig0019471:-1898 Msa1374200:CDS
GAACATGGTTAATTTAAGGA+GGG 0.576006 tig0019471:-506 Msa1374200:three_prime_UTR
GAGCTACAATTACAAACAGA+AGG 0.576404 tig0019471:+876 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 tig0019471:-4641 Msa1374200:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 tig0019471:-2531 Msa1374200:CDS
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 tig0019471:+1916 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 tig0019471:+4453 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 tig0019471:+2476 None:intergenic
AATCATCAAAGGTAACTTCG+AGG 0.583187 tig0019471:-473 Msa1374200:three_prime_UTR
TCCCAAACCAAGACCAACAA+GGG 0.583537 tig0019471:+4259 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 tig0019471:-1908 Msa1374200:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 tig0019471:-2521 Msa1374200:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 tig0019471:-4401 Msa1374200:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 tig0019471:+926 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 tig0019471:-972 Msa1374200:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 tig0019471:-4478 Msa1374200:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 tig0019471:-995 Msa1374200:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 tig0019471:-2048 Msa1374200:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 tig0019471:+994 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 tig0019471:-4235 Msa1374200:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 tig0019471:-4376 Msa1374200:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 tig0019471:+1908 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.607966 tig0019471:-4192 Msa1374200:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 tig0019471:+2118 None:intergenic
GCAAGTAGCCAAATCATCAA+AGG 0.614035 tig0019471:-484 Msa1374200:three_prime_UTR
TCTTGAGGAAGAAAAGGAGA+GGG 0.618954 tig0019471:-682 Msa1374200:three_prime_UTR
ATTGTCAGAAATAAGGACAC+CGG 0.619613 tig0019471:+2344 None:intergenic
TTCTTGAGGAAGAAAAGGAG+AGG 0.623780 tig0019471:-683 Msa1374200:three_prime_UTR
TGACAACCCTTCAGAAGACA+CGG 0.630940 tig0019471:-2301 Msa1374200:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 tig0019471:-989 Msa1374200:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 tig0019471:-4380 Msa1374200:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 tig0019471:-2064 Msa1374200:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 tig0019471:+995 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 tig0019471:+2167 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 tig0019471:+2295 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 tig0019471:+2348 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 tig0019471:-2527 Msa1374200:CDS
GTAGCAGTGGGTTTAGTACA+CGG 0.644415 tig0019471:-920 Msa1374200:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 tig0019471:+4196 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 tig0019471:-4655 Msa1374200:intron
ATAAATATACACGATTGTGA+AGG 0.658702 tig0019471:+1750 None:intergenic
ATACTCGTTCTCGTTTACGC+CGG 0.663285 tig0019471:-4551 Msa1374200:CDS
GCTTGCGACTCCGACACCGG+TGG 0.668961 tig0019471:+979 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 tig0019471:-1740 Msa1374200:intron
TCATCATGTCTACACATCGT+CGG 0.680005 tig0019471:+769 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 tig0019471:-1809 Msa1374200:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 tig0019471:+4292 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 tig0019471:-4654 Msa1374200:intron
GCATAAAGACATTACCTCTG+GGG 0.717940 tig0019471:+1726 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 tig0019471:+4220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATTGAAAAGA+TGG - tig0019471:1388-1407 Msa1374200:intron 10.0%
!! TATAAGAAAAGATAGAAATA+TGG - tig0019471:1530-1549 Msa1374200:intron 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG + tig0019471:2387-2406 None:intergenic 15.0%
!! ATTAGAACTAAATTAAATCA+AGG + tig0019471:2461-2480 None:intergenic 15.0%
!! TTTACAACTATTTAAATTGA+GGG + tig0019471:2548-2567 None:intergenic 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG - tig0019471:2548-2567 Msa1374200:intron 15.0%
!!! TTAATTAATTTTGAATGATC+TGG - tig0019471:3723-3742 Msa1374200:intron 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG + tig0019471:4129-4148 None:intergenic 15.0%
!! AGAAAAAATAAAGCAAATTA+TGG - tig0019471:4129-4148 Msa1374200:intron 15.0%
!!! TTTTTTTTAGTAAATTGTAG+AGG - tig0019471:4864-4883 Msa1374200:five_prime_UTR 15.0%
!!! TTTTTTTAGTAAATTGTAGA+GGG - tig0019471:4865-4884 Msa1374200:five_prime_UTR 15.0%
!! AATACATTATTATAGATGAC+AGG - tig0019471:762-781 Msa1374200:exon 20.0%
!! ATACATTATTATAGATGACA+GGG - tig0019471:763-782 Msa1374200:exon 20.0%
!! ATATATAATTGAAAAGATGG+TGG - tig0019471:1391-1410 Msa1374200:intron 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG + tig0019471:1522-1541 None:intergenic 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG - tig0019471:1912-1931 Msa1374200:CDS 20.0%
!! AAATTAAATCAAGGAGATTT+GGG + tig0019471:2452-2471 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG + tig0019471:2453-2472 None:intergenic 20.0%
!! GTTTACAACTATTTAAATTG+AGG + tig0019471:2549-2568 None:intergenic 20.0%
!!! TATACATTACTTAAGTCTTT+TGG + tig0019471:2635-2654 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG + tig0019471:3178-3197 None:intergenic 20.0%
!! AAAGGAATGATTTCTAATTT+AGG - tig0019471:3178-3197 Msa1374200:intron 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG + tig0019471:3871-3890 None:intergenic 20.0%
!! AGAAGAATGTTATTATCTTA+AGG - tig0019471:3907-3926 Msa1374200:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG - tig0019471:3908-3927 Msa1374200:intron 20.0%
!! AAGAATGTTATTATCTTAAG+GGG - tig0019471:3909-3928 Msa1374200:intron 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG - tig0019471:4037-4056 Msa1374200:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG - tig0019471:4357-4376 Msa1374200:CDS 20.0%
!! TAATTCTTCTTTATAAATGG+TGG - tig0019471:4360-4379 Msa1374200:CDS 20.0%
!!! TTTTTTAGTAAATTGTAGAG+GGG - tig0019471:4866-4885 Msa1374200:five_prime_UTR 20.0%
!! CAATGAAAATAAAATGAACA+TGG - tig0019471:4897-4916 Msa1374200:five_prime_UTR 20.0%
!! AAATGAACATGGTTAATTTA+AGG - tig0019471:4908-4927 Msa1374200:five_prime_UTR 20.0%
! TTTAGATTCATTCAACTTTC+TGG - tig0019471:536-555 Msa1374200:three_prime_UTR 25.0%
! TACATTATTATAGATGACAG+GGG - tig0019471:764-783 Msa1374200:exon 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG - tig0019471:1855-1874 Msa1374200:CDS 25.0%
! AAGTATGTAAGGAAAGAATA+CGG - tig0019471:1866-1885 Msa1374200:CDS 25.0%
!! CAATGTGTTTTACTTAACAA+AGG - tig0019471:1911-1930 Msa1374200:CDS 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG - tig0019471:1913-1932 Msa1374200:CDS 25.0%
! AAATAAAGGCTTAAGCAAAT+TGG + tig0019471:2373-2392 None:intergenic 25.0%
!! TTCAAATTTTGAACTTACCT+AGG - tig0019471:2391-2410 Msa1374200:CDS 25.0%
! TAAAATTCTTTCTTGCATGA+AGG + tig0019471:2518-2537 None:intergenic 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG + tig0019471:2955-2974 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG + tig0019471:3084-3103 None:intergenic 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG + tig0019471:3153-3172 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG - tig0019471:3277-3296 Msa1374200:intron 25.0%
! ATAAATATACACGATTGTGA+AGG + tig0019471:3671-3690 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG + tig0019471:3805-3824 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG - tig0019471:3833-3852 Msa1374200:intron 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG + tig0019471:3866-3885 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG - tig0019471:3983-4002 Msa1374200:intron 25.0%
! AACAAATTCCGTAAAAGAAT+TGG + tig0019471:4048-4067 None:intergenic 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG + tig0019471:4165-4184 None:intergenic 25.0%
! AATTCAAAAACAATGAGGTA+GGG + tig0019471:4218-4237 None:intergenic 25.0%
! TAATTCAAAAACAATGAGGT+AGG + tig0019471:4219-4238 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG + tig0019471:4223-4242 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG - tig0019471:4253-4272 Msa1374200:CDS 25.0%
! AATAGTTCCTATCTAATAAC+TGG + tig0019471:4284-4303 None:intergenic 25.0%
!! ACACATTCTTTTTATGTGTT+TGG - tig0019471:4836-4855 Msa1374200:five_prime_UTR 25.0%
!! TTCATTGATTCATTCCAGTT+TGG + tig0019471:484-503 None:intergenic 30.0%
CCATTCAAGTATATGGAATA+TGG + tig0019471:642-661 None:intergenic 30.0%
CCATATTCCATATACTTGAA+TGG - tig0019471:639-658 Msa1374200:three_prime_UTR 30.0%
GATGAAGCTCTTATAACATT+AGG - tig0019471:828-847 Msa1374200:CDS 30.0%
! GCTCTTATAACATTAGGTTT+TGG - tig0019471:834-853 Msa1374200:CDS 30.0%
ATGATGTTACTCTCATTTGT+AGG - tig0019471:918-937 Msa1374200:CDS 30.0%
TATGAAACTTTCTTGATGAG+AGG + tig0019471:973-992 None:intergenic 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG - tig0019471:990-1009 Msa1374200:CDS 30.0%
!! TTGAAAAGATGGTGGAAATT+AGG - tig0019471:1399-1418 Msa1374200:intron 30.0%
!! TGAAAAGATGGTGGAAATTA+GGG - tig0019471:1400-1419 Msa1374200:intron 30.0%
AAATTAGGGTTAAGTGGTTT+GGG - tig0019471:1414-1433 Msa1374200:intron 30.0%
AGTCAAATCACTATTTACAG+AGG - tig0019471:1492-1511 Msa1374200:intron 30.0%
! GTCTCATTTTGTTACATTTG+CGG + tig0019471:1778-1797 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG - tig0019471:1783-1802 Msa1374200:CDS 30.0%
AGTTGGTTAGTATTTAGATG+AGG - tig0019471:1806-1825 Msa1374200:CDS 30.0%
AATATAGTGAGTAGTGAGAT+AGG - tig0019471:1831-1850 Msa1374200:CDS 30.0%
! TTGATATTAAGGCTTTGTCT+GGG - tig0019471:1984-2003 Msa1374200:intron 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG - tig0019471:2052-2071 Msa1374200:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG + tig0019471:2216-2235 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG - tig0019471:2214-2233 Msa1374200:CDS 30.0%
GGCTAAATGATGAAAGTAAA+TGG + tig0019471:2713-2732 None:intergenic 30.0%
TTACTTTCATCATTTAGCCT+AGG - tig0019471:2714-2733 Msa1374200:intron 30.0%
! TTATGGCTTTACTTGTCTTA+AGG - tig0019471:2743-2762 Msa1374200:intron 30.0%
TGACAAATCATAGAGATGAT+GGG - tig0019471:2841-2860 Msa1374200:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG + tig0019471:3152-3171 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG + tig0019471:3154-3173 None:intergenic 30.0%
GGAATGATTTCTAATTTAGG+TGG - tig0019471:3181-3200 Msa1374200:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG + tig0019471:3317-3336 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG - tig0019471:3394-3413 Msa1374200:intron 30.0%
!! TTGTTTTACTATACCATTCC+CGG - tig0019471:3440-3459 Msa1374200:intron 30.0%
AAACAAATGCAAACTATACC+TGG - tig0019471:4180-4199 Msa1374200:CDS 30.0%
!! TGATGACGTTTTATATACCT+CGG - tig0019471:4666-4685 Msa1374200:intron 30.0%
!! TTTTCATGATTTAAAGTCCG+AGG + tig0019471:4686-4705 None:intergenic 30.0%
TGAACATGGTTAATTTAAGG+AGG - tig0019471:4911-4930 Msa1374200:five_prime_UTR 30.0%
GAACATGGTTAATTTAAGGA+GGG - tig0019471:4912-4931 Msa1374200:five_prime_UTR 30.0%
GTACGTACCATTCAAGTATA+TGG + tig0019471:649-668 None:intergenic 35.0%
ATCTCAAATCGAATCGAAGA+TGG + tig0019471:727-746 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG + tig0019471:968-987 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG - tig0019471:1002-1021 Msa1374200:CDS 35.0%
GTAAGCACCAATTAACATTC+CGG + tig0019471:1012-1031 None:intergenic 35.0%
! TGTTAATTGGTGCTTACTCA+TGG - tig0019471:1015-1034 Msa1374200:intron 35.0%
! GTTAATTGGTGCTTACTCAT+GGG - tig0019471:1016-1035 Msa1374200:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG - tig0019471:1017-1036 Msa1374200:intron 35.0%
!! TTGTTTCTGATCAACATGGA+AGG - tig0019471:1042-1061 Msa1374200:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG + tig0019471:1108-1127 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG + tig0019471:1129-1148 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG + tig0019471:1130-1149 None:intergenic 35.0%
ACAAGCAAGGAGACATAATT+TGG + tig0019471:1131-1150 None:intergenic 35.0%
AACAAATTCAAGAAACCACG+AGG + tig0019471:1201-1220 None:intergenic 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG - tig0019471:1282-1301 Msa1374200:intron 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG - tig0019471:1283-1302 Msa1374200:intron 35.0%
GAAATTAGGGTTAAGTGGTT+TGG - tig0019471:1413-1432 Msa1374200:intron 35.0%
ATCGTGTATCATTGTAACAG+AGG + tig0019471:1681-1700 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG - tig0019471:1727-1746 Msa1374200:intron 35.0%
! TCATTTTGTTACATTTGCGG+AGG + tig0019471:1775-1794 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG - tig0019471:1789-1808 Msa1374200:CDS 35.0%
AATACGGATCTCTTGAATCA+AGG - tig0019471:1882-1901 Msa1374200:CDS 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG + tig0019471:1947-1966 None:intergenic 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG - tig0019471:1945-1964 Msa1374200:intron 35.0%
GCAATATCGCCTTGATATTA+AGG - tig0019471:1973-1992 Msa1374200:intron 35.0%
CAGACAAAGCCTTAATATCA+AGG + tig0019471:1985-2004 None:intergenic 35.0%
! CTTGATATTAAGGCTTTGTC+TGG - tig0019471:1983-2002 Msa1374200:intron 35.0%
ACCAAAACCCTTCAATATGT+AGG - tig0019471:2075-2094 Msa1374200:CDS 35.0%
! TCCTACATATTGAAGGGTTT+TGG + tig0019471:2079-2098 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG + tig0019471:2085-2104 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG + tig0019471:2086-2105 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG - tig0019471:2089-2108 Msa1374200:CDS 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG + tig0019471:2211-2230 None:intergenic 35.0%
! CTACTAGTTTAACTGCAAAC+TGG + tig0019471:2304-2323 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG - tig0019471:2399-2418 Msa1374200:CDS 35.0%
TTCTTGCATGAAGGAATGAT+AGG + tig0019471:2509-2528 None:intergenic 35.0%
! GTTAATTGTTGGCTACACAT+AGG + tig0019471:2610-2629 None:intergenic 35.0%
! GTCTTTTGGCAGTTAATTGT+TGG + tig0019471:2621-2640 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG - tig0019471:2726-2745 Msa1374200:intron 35.0%
TAAAGCCATAACAGTTTCCT+AGG + tig0019471:2734-2753 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG + tig0019471:2842-2861 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG - tig0019471:2840-2859 Msa1374200:intron 35.0%
AACAGAAGAAGGAAAGATGT+GGG + tig0019471:2944-2963 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG + tig0019471:2945-2964 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG + tig0019471:2997-3016 None:intergenic 35.0%
! AACTGAAGCAACTAACGTTT+TGG - tig0019471:3015-3034 Msa1374200:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG - tig0019471:3037-3056 Msa1374200:intron 35.0%
AATGGCAAAAAACTTCCTTC+CGG - tig0019471:3055-3074 Msa1374200:intron 35.0%
ATTGTCAGAAATAAGGACAC+CGG + tig0019471:3077-3096 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG - tig0019471:3160-3179 Msa1374200:intron 35.0%
TCCTTTCACCCAAATTATCA+AGG - tig0019471:3224-3243 Msa1374200:intron 35.0%
! ACCTTGATAATTTGGGTGAA+AGG + tig0019471:3228-3247 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG + tig0019471:3235-3254 None:intergenic 35.0%
! AAGGGTTGACCTTGATAATT+TGG + tig0019471:3236-3255 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG - tig0019471:3243-3262 Msa1374200:intron 35.0%
AAACACTGCCCATAATAGAA+GGG + tig0019471:3254-3273 None:intergenic 35.0%
AAAACACTGCCCATAATAGA+AGG + tig0019471:3255-3274 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG - tig0019471:3256-3275 Msa1374200:intron 35.0%
TCTCTGTCTGCAATTTATCT+GGG + tig0019471:3348-3367 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG + tig0019471:3349-3368 None:intergenic 35.0%
ACCTTTGTAACTTACATCCT+GGG + tig0019471:3374-3393 None:intergenic 35.0%
! TGTTTTACTATACCATTCCC+GGG - tig0019471:3441-3460 Msa1374200:intron 35.0%
GATAGAATGTTAATGGGAGA+AGG + tig0019471:3591-3610 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG + tig0019471:3597-3616 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG + tig0019471:3598-3617 None:intergenic 35.0%
ATATGCGAGCTCCAAATAAA+AGG + tig0019471:3636-3655 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG + tig0019471:3696-3715 None:intergenic 35.0%
TTGCATAAAGACATTACCTC+TGG + tig0019471:3697-3716 None:intergenic 35.0%
GAGAAATCTTGTGCATTCTT+CGG - tig0019471:3764-3783 Msa1374200:intron 35.0%
CACAGAGAACTAACTTTGTA+AGG + tig0019471:4087-4106 None:intergenic 35.0%
CTTTCGTCATGTATAAGACA+TGG - tig0019471:4314-4333 Msa1374200:CDS 35.0%
! GGTTTCACAGCAATGTTTTT+CGG - tig0019471:4335-4354 Msa1374200:CDS 35.0%
GAGCTACAATTACAAACAGA+AGG + tig0019471:4545-4564 None:intergenic 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG - tig0019471:4552-4571 Msa1374200:CDS 35.0%
!! TGTGCACTAGTAATTTGTTC+TGG + tig0019471:4714-4733 None:intergenic 35.0%
AATGTGTGCGAACGAATAAT+TGG + tig0019471:4823-4842 None:intergenic 35.0%
! CGAAGTTACCTTTGATGATT+TGG + tig0019471:4945-4964 None:intergenic 35.0%
AATCATCAAAGGTAACTTCG+AGG - tig0019471:4945-4964 Msa1374200:five_prime_UTR 35.0%
!! TTCTGAAATCCAACCAATGC+CGG + tig0019471:889-908 None:intergenic 40.0%
TGGTTGGATTTCAGAAGCAA+TGG - tig0019471:893-912 Msa1374200:CDS 40.0%
!! GGCATTGTTTCTGATCAACA+TGG - tig0019471:1038-1057 Msa1374200:intron 40.0%
GATCAACATGGAAGGAGAAA+AGG - tig0019471:1050-1069 Msa1374200:intron 40.0%
AAGGGAACGAAAAACAAGCA+AGG + tig0019471:1144-1163 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG - tig0019471:1146-1165 Msa1374200:intron 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG - tig0019471:1246-1265 Msa1374200:intron 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG - tig0019471:1254-1273 Msa1374200:intron 40.0%
TGTACCAACAGTCCAAAAAC+CGG + tig0019471:1261-1280 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG - tig0019471:1408-1427 Msa1374200:intron 40.0%
!! TCAAGTTTTATCGCACCAAG+TGG + tig0019471:1601-1620 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG + tig0019471:1672-1691 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG + tig0019471:1726-1745 None:intergenic 40.0%
TCTACACTAGGAGAGAAAAG+AGG - tig0019471:1739-1758 Msa1374200:intron 40.0%
GGATCTCTTGAATCAAGGAA+AGG - tig0019471:1887-1906 Msa1374200:CDS 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG - tig0019471:1941-1960 Msa1374200:intron 40.0%
ATATTGCACTCACCTTCCTT+TGG + tig0019471:1960-1979 None:intergenic 40.0%
AAAAACCTCCACACAAGATG+GGG + tig0019471:2042-2061 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG + tig0019471:2043-2062 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG + tig0019471:2044-2063 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG - tig0019471:2102-2121 Msa1374200:CDS 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG + tig0019471:2261-2280 None:intergenic 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG + tig0019471:2265-2284 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG + tig0019471:2283-2302 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG + tig0019471:2411-2430 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG - tig0019471:2411-2430 Msa1374200:CDS 40.0%
TGCATGAAGGAATGATAGGA+AGG + tig0019471:2505-2524 None:intergenic 40.0%
! ATTGTTGGCTACACATAGGA+AGG + tig0019471:2606-2625 None:intergenic 40.0%
TCTGCAAGGAACATTGCATT+GGG + tig0019471:2871-2890 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG + tig0019471:2872-2891 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG + tig0019471:2939-2958 None:intergenic 40.0%
CCTTTCAAGCATAGGTATCT+TGG + tig0019471:2989-3008 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG - tig0019471:2986-3005 Msa1374200:intron 40.0%
GTAAAACCGTGTCTTCTGAA+GGG + tig0019471:3126-3145 None:intergenic 40.0%
AGTAAAACCGTGTCTTCTGA+AGG + tig0019471:3127-3146 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG - tig0019471:3242-3261 Msa1374200:intron 40.0%
TCCCAGGATGTAAGTTACAA+AGG - tig0019471:3370-3389 Msa1374200:intron 40.0%
CACCTTTGTAACTTACATCC+TGG + tig0019471:3375-3394 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG + tig0019471:3456-3475 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG + tig0019471:3461-3480 None:intergenic 40.0%
GGCATCAATCATACATTTCC+CGG + tig0019471:3462-3481 None:intergenic 40.0%
! GTAGCTCTGTGCACAAAATT+TGG + tig0019471:3483-3502 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG + tig0019471:3524-3543 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG + tig0019471:3624-3643 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG - tig0019471:3622-3641 Msa1374200:intron 40.0%
GCATAAAGACATTACCTCTG+GGG + tig0019471:3695-3714 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG + tig0019471:4201-4220 None:intergenic 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG + tig0019471:4263-4282 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG - tig0019471:4274-4293 Msa1374200:CDS 40.0%
TGGTGGAATGTTATGTCCAT+TGG - tig0019471:4476-4495 Msa1374200:CDS 40.0%
! TTATGTCCATTGGTAGCAGT+GGG - tig0019471:4486-4505 Msa1374200:CDS 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG - tig0019471:4588-4607 Msa1374200:CDS 40.0%
ACACAGTATCTTGCAGTTCT+TGG + tig0019471:4614-4633 None:intergenic 40.0%
TCATCATGTCTACACATCGT+CGG + tig0019471:4652-4671 None:intergenic 40.0%
TTACTAGTGCACAGTTCTTG+AGG - tig0019471:4721-4740 Msa1374200:intron 40.0%
CACAGTTCTTGAGGAAGAAA+AGG - tig0019471:4730-4749 Msa1374200:intron 40.0%
TTCTTGAGGAAGAAAAGGAG+AGG - tig0019471:4735-4754 Msa1374200:intron 40.0%
TCTTGAGGAAGAAAAGGAGA+GGG - tig0019471:4736-4755 Msa1374200:intron 40.0%
AAAAGGAGAGGGAAGAAGTT+CGG - tig0019471:4747-4766 Msa1374200:intron 40.0%
GCAAGTAGCCAAATCATCAA+AGG - tig0019471:4934-4953 Msa1374200:five_prime_UTR 40.0%
ATGACAGGGGAAGAAGTTGA+AGG - tig0019471:777-796 Msa1374200:exon 45.0%
ATACTCGTTCTCGTTTACGC+CGG - tig0019471:867-886 Msa1374200:CDS 45.0%
TTCCATGCAGATTGAACTGC+AGG + tig0019471:945-964 None:intergenic 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG - tig0019471:1152-1171 Msa1374200:intron 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG - tig0019471:1157-1176 Msa1374200:intron 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG - tig0019471:1158-1177 Msa1374200:intron 45.0%
TCCCAAACCAAGACCAACAA+GGG + tig0019471:1162-1181 None:intergenic 45.0%
TTTGTTCCCGCTCCTAATAG+AGG - tig0019471:1215-1234 Msa1374200:intron 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG - tig0019471:1226-1245 Msa1374200:intron 45.0%
ACCATCCAGGTACCTCTATT+AGG + tig0019471:1230-1249 None:intergenic 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG - tig0019471:1239-1258 Msa1374200:intron 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG - tig0019471:1464-1483 Msa1374200:intron 45.0%
TTTATCGCACCAAGTGGAGT+CGG + tig0019471:1595-1614 None:intergenic 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG - tig0019471:1991-2010 Msa1374200:intron 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG - tig0019471:1996-2015 Msa1374200:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG - tig0019471:2001-2020 Msa1374200:intron 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG - tig0019471:2007-2026 Msa1374200:intron 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG - tig0019471:2008-2027 Msa1374200:intron 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG - tig0019471:2009-2028 Msa1374200:intron 45.0%
TGTAGGAAACGTGTTGAAGG+AGG - tig0019471:2092-2111 Msa1374200:CDS 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG - tig0019471:2101-2120 Msa1374200:CDS 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG + tig0019471:2256-2275 None:intergenic 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG + tig0019471:2262-2281 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG - tig0019471:2420-2439 Msa1374200:CDS 45.0%
TCTTGGCATCACAATCTGCA+AGG + tig0019471:2885-2904 None:intergenic 45.0%
CAGATTGTGATGCCAAGACT+GGG - tig0019471:2887-2906 Msa1374200:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG + tig0019471:2940-2959 None:intergenic 45.0%
! CATAGGTATCTTGGTGACTC+TGG + tig0019471:2980-2999 None:intergenic 45.0%
TCAGAAATAAGGACACCGGA+AGG + tig0019471:3073-3092 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG - tig0019471:3117-3136 Msa1374200:intron 45.0%
ACTCAGAGGTCAGCAAAACA+AGG + tig0019471:3303-3322 None:intergenic 45.0%
! ATTTTGTGCACAGAGCTACC+TGG - tig0019471:3484-3503 Msa1374200:intron 45.0%
! TTTTGTGCACAGAGCTACCT+GGG - tig0019471:3485-3504 Msa1374200:intron 45.0%
TCTGCCTGAAGACCTAACAA+CGG - tig0019471:3609-3628 Msa1374200:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG - tig0019471:3678-3697 Msa1374200:intron 45.0%
! GTTATGTCCATTGGTAGCAG+TGG - tig0019471:4485-4504 Msa1374200:CDS 45.0%
ACTAAACCCACTGCTACCAA+TGG + tig0019471:4495-4514 None:intergenic 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG - tig0019471:4498-4517 Msa1374200:CDS 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG - tig0019471:4587-4606 Msa1374200:CDS 45.0%
GTCCTGCAGTTCAATCTGCA+TGG - tig0019471:940-959 Msa1374200:CDS 50.0%
GCTACTGTTACTGCTACTGC+CGG - tig0019471:1086-1105 Msa1374200:intron 50.0%
CTCCCAAACCAAGACCAACA+AGG + tig0019471:1163-1182 None:intergenic 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG - tig0019471:1161-1180 Msa1374200:intron 50.0%
AGAAACCACGAGGACAAGAC+AGG + tig0019471:1191-1210 None:intergenic 50.0%
CAGGTACCTCTATTAGGAGC+GGG + tig0019471:1224-1243 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG + tig0019471:1225-1244 None:intergenic 50.0%
ACCGGAAAACACAACCATCC+AGG + tig0019471:1243-1262 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG + tig0019471:1640-1659 None:intergenic 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG - tig0019471:2000-2019 Msa1374200:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG - tig0019471:2002-2021 Msa1374200:intron 50.0%
GAGTAGATCCCCATCTTGTG+TGG - tig0019471:2031-2050 Msa1374200:CDS 50.0%
TAGATCCCCATCTTGTGTGG+AGG - tig0019471:2034-2053 Msa1374200:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG + tig0019471:2251-2270 None:intergenic 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG + tig0019471:2252-2271 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG + tig0019471:2253-2272 None:intergenic 50.0%
GGCTACACATAGGAAGGAAG+TGG + tig0019471:2600-2619 None:intergenic 50.0%
GCAGATTGTGATGCCAAGAC+TGG - tig0019471:2886-2905 Msa1374200:intron 50.0%
TTGTGATGCCAAGACTGGGT+TGG - tig0019471:2891-2910 Msa1374200:intron 50.0%
ATTGCAGACAGAGAAGTCCC+AGG - tig0019471:3354-3373 Msa1374200:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG - tig0019471:3520-3539 Msa1374200:intron 50.0%
CTGCCTGAAGACCTAACAAC+GGG - tig0019471:3610-3629 Msa1374200:intron 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG - tig0019471:4456-4475 Msa1374200:CDS 50.0%
AGCTCAGTGGGTAGAATTGG+TGG - tig0019471:4459-4478 Msa1374200:CDS 50.0%
TCTTGGCCCATGGTCTCAAA+CGG + tig0019471:4597-4616 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG + tig0019471:4607-4626 None:intergenic 50.0%
GTTCTCGTTTACGCCGGCAT+TGG - tig0019471:873-892 Msa1374200:CDS 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG - tig0019471:877-896 Msa1374200:CDS 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG - tig0019471:1164-1183 Msa1374200:intron 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG - tig0019471:1222-1241 Msa1374200:intron 55.0%
! TCCATGTAGCCGACTCCACT+TGG - tig0019471:1583-1602 Msa1374200:intron 55.0%
ACCAAGTGGAGTCGGCTACA+TGG + tig0019471:1587-1606 None:intergenic 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG - tig0019471:2897-2916 Msa1374200:intron 55.0%
AGCCATCTCCAACCCAGTCT+TGG + tig0019471:2902-2921 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG + tig0019471:3616-3635 None:intergenic 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG + tig0019471:4426-4445 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG - tig0019471:4423-4442 Msa1374200:CDS 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG + tig0019471:4427-4446 None:intergenic 55.0%
TCAGTCAGAACCACCGGTGT+CGG - tig0019471:4429-4448 Msa1374200:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG + tig0019471:3513-3532 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG - tig0019471:3510-3529 Msa1374200:intron 60.0%
TGAGCTTGCGACTCCGACAC+CGG + tig0019471:4445-4464 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG - tig0019471:4446-4465 Msa1374200:CDS 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG - tig0019471:4447-4466 Msa1374200:CDS 60.0%
GCGGTCCTGTCTTGTCCTCG+TGG - tig0019471:1183-1202 Msa1374200:intron 65.0%
ACGGCTGACAAGAGGAGCCC+AGG + tig0019471:3505-3524 None:intergenic 65.0%
GCTTGCGACTCCGACACCGG+TGG + tig0019471:4442-4461 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019471 gene 471 4969 471 ID=Msa1374200;Name=Msa1374200
tig0019471 mRNA 471 4969 471 ID=Msa1374200-mRNA-1;Parent=Msa1374200;Name=Msa1374200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=187|1|1|1|0.75|0.8|5|307|501
tig0019471 exon 471 1023 471 ID=Msa1374200-mRNA-1:exon:3770;Parent=Msa1374200-mRNA-1
tig0019471 exon 1741 1943 1741 ID=Msa1374200-mRNA-1:exon:3769;Parent=Msa1374200-mRNA-1
tig0019471 exon 2025 2550 2025 ID=Msa1374200-mRNA-1:exon:3768;Parent=Msa1374200-mRNA-1
tig0019471 exon 4136 4663 4136 ID=Msa1374200-mRNA-1:exon:3767;Parent=Msa1374200-mRNA-1
tig0019471 exon 4780 4969 4780 ID=Msa1374200-mRNA-1:exon:3766;Parent=Msa1374200-mRNA-1
tig0019471 five_prime_UTR 4783 4969 4783 ID=Msa1374200-mRNA-1:five_prime_utr;Parent=Msa1374200-mRNA-1
tig0019471 CDS 4780 4782 4780 ID=Msa1374200-mRNA-1:cds;Parent=Msa1374200-mRNA-1
tig0019471 CDS 4136 4663 4136 ID=Msa1374200-mRNA-1:cds;Parent=Msa1374200-mRNA-1
tig0019471 CDS 2025 2550 2025 ID=Msa1374200-mRNA-1:cds;Parent=Msa1374200-mRNA-1
tig0019471 CDS 1741 1943 1741 ID=Msa1374200-mRNA-1:cds;Parent=Msa1374200-mRNA-1
tig0019471 CDS 778 1023 778 ID=Msa1374200-mRNA-1:cds;Parent=Msa1374200-mRNA-1
tig0019471 three_prime_UTR 471 777 471 ID=Msa1374200-mRNA-1:three_prime_utr;Parent=Msa1374200-mRNA-1
Gene Sequence

>Msa1374200

ATGATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACACGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>Msa1374200

MMTGEEVEGSSSSSSYTVDEALITLGFGNFQILVLVYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV*