AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625540 MtrunA17_Chr4g0000061 98.004 501 8 1 1 501 1 499 0.0 988
Msa0625540 MtrunA17_Chr2g0319001 28.132 455 276 17 56 496 106 523 2.19e-31 127
Msa0625540 MtrunA17_Chr4g0042131 27.059 425 251 16 88 501 44 420 5.49e-27 113
Msa0625540 MtrunA17_Chr2g0319011 27.044 318 185 14 185 491 27 308 1.21e-19 89.7
Msa0625540 MtrunA17_Chr8g0356471 26.190 462 270 18 58 501 112 520 6.17e-19 89.7
Msa0625540 MtrunA17_Chr5g0432581 22.318 466 293 15 59 490 47 477 1.67e-17 85.1
Msa0625540 MtrunA17_Chr4g0021771 24.138 464 271 18 59 490 83 497 7.54e-17 83.2
Msa0625540 MtrunA17_Chr4g0036021 24.018 433 275 15 83 490 79 482 1.85e-15 79.0
Msa0625540 MtrunA17_Chr8g0373531 22.926 458 300 15 59 490 47 477 2.17e-15 78.6
Msa0625540 MtrunA17_Chr2g0303731 25.856 263 183 7 7 261 1 259 8.84e-15 77.0
Msa0625540 MtrunA17_Chr1g0186831 23.404 517 302 23 30 488 20 500 1.41e-14 76.3
Msa0625540 MtrunA17_Chr8g0390521 24.213 413 240 13 59 440 46 416 5.01e-14 74.3
Msa0625540 MtrunA17_Chr8g0376611 28.372 215 146 5 71 281 2 212 1.69e-13 72.8
Msa0625540 MtrunA17_Chr3g0144361 22.294 462 298 12 59 490 56 486 2.05e-13 72.4
Msa0625540 MtrunA17_Chr7g0250881 26.761 213 135 6 70 272 106 307 2.86e-13 72.0
Msa0625540 MtrunA17_Chr6g0485661 22.388 402 260 11 59 440 86 455 1.52e-12 69.7
Msa0625540 MtrunA17_Chr4g0004821 28.643 199 118 5 70 259 77 260 1.79e-12 69.3
Msa0625540 MtrunA17_Chr1g0213631 29.167 168 115 3 91 255 48 214 2.15e-12 68.9
Msa0625540 MtrunA17_Chr4g0034681 22.936 436 287 14 82 494 81 490 3.85e-12 68.6
Msa0625540 MtrunA17_Chr5g0434231 30.625 160 87 3 71 229 5 141 4.03e-12 64.3
Msa0625540 MtrunA17_Chr6g0486021 27.650 217 132 6 58 264 79 280 5.74e-12 67.8
Msa0625540 MtrunA17_Chr8g0376631 27.638 199 132 7 89 281 87 279 1.00e-11 67.4
Msa0625540 MtrunA17_Chr7g0214451 28.144 167 116 3 89 252 94 259 2.74e-11 65.9
Msa0625540 MtrunA17_Chr7g0259471 26.368 201 143 3 58 257 67 263 3.56e-11 65.5
Msa0625540 MtrunA17_Chr2g0284271 63.636 44 16 0 437 480 1 44 3.68e-11 58.2
Msa0625540 MtrunA17_Chr2g0282031 24.631 203 139 4 59 257 81 273 4.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625540 AT3G13050.2 66.734 493 159 4 10 497 2 494 0.0 606
Msa0625540 AT3G13050.4 66.734 493 159 4 10 497 2 494 0.0 606
Msa0625540 AT3G13050.1 66.734 493 159 4 10 497 2 494 0.0 606
Msa0625540 AT3G13050.3 66.734 493 159 4 10 497 2 494 0.0 606
Msa0625540 AT3G20660.1 26.007 546 298 20 5 499 24 514 4.43e-32 129
Msa0625540 AT3G18830.1 22.951 427 291 10 82 490 87 493 4.12e-17 84.7
Msa0625540 AT2G16130.1 24.464 466 289 15 59 493 54 487 1.70e-16 82.4
Msa0625540 AT1G67300.2 25.781 384 226 10 70 437 92 432 7.39e-16 80.5
Msa0625540 AT2G16120.1 24.406 463 287 15 59 490 54 484 1.37e-15 79.7
Msa0625540 AT1G73220.1 23.207 474 284 17 53 501 113 531 1.54e-15 79.7
Msa0625540 AT1G67300.1 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa0625540 AT1G67300.3 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa0625540 AT1G67300.6 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa0625540 AT1G67300.7 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa0625540 AT1G67300.4 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa0625540 AT1G67300.5 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa0625540 AT1G79820.3 28.740 254 142 9 70 311 95 321 1.21e-14 76.6
Msa0625540 AT1G79820.2 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa0625540 AT1G79820.1 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa0625540 AT1G79820.4 28.780 205 121 6 70 264 95 284 5.48e-14 74.3
Msa0625540 AT2G20780.1 24.318 440 252 18 82 490 106 495 8.22e-14 74.3
Msa0625540 AT2G20780.2 24.318 440 252 18 82 490 48 437 9.63e-14 73.9
Msa0625540 AT1G79360.1 25.053 475 266 19 58 499 98 515 1.33e-13 73.6
Msa0625540 AT1G79410.1 24.086 465 279 18 54 500 99 507 1.79e-13 73.2
Msa0625540 AT1G76430.1 19.963 536 326 15 30 498 18 517 4.41e-13 72.0
Msa0625540 AT1G16390.1 25.821 457 260 18 58 493 106 504 4.62e-12 68.6
Msa0625540 AT5G43360.1 21.639 476 271 19 30 444 20 454 5.44e-12 68.6
Msa0625540 AT5G16150.2 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0625540 AT5G16150.1 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0625540 AT5G16150.3 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0625540 AT2G18480.1 23.846 390 232 14 82 440 73 428 3.94e-11 65.9

Find 143 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGATTCATTCAACTTTC+TGG 0.126827 4_3:-4627849 Msa0625540:five_prime_UTR
AAGGGTTGACCTTGATAATT+TGG 0.146854 4_3:+4625135 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 4_3:-4625126 Msa0625540:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 4_3:-4623816 Msa0625540:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 4_3:+4625022 None:intergenic
AAATGAACATGGTTAATTTA+AGG 0.189180 4_3:-4623460 Msa0625540:three_prime_UTR
AAAGGAATGATTTCTAATTT+AGG 0.203260 4_3:-4625190 Msa0625540:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 4_3:+4627244 None:intergenic
CGAAGTTACCTTTGATGATT+TGG 0.234261 4_3:+4623426 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 4_3:+4623757 None:intergenic
CCATTCAAGTATATGGAATA+TGG 0.273352 4_3:+4627738 None:intergenic
GTACGTACCATTCAAGTATA+TGG 0.276122 4_3:+4627731 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 4_3:-4627544 Msa0625540:CDS
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 4_3:-4627214 Msa0625540:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 4_3:-4627215 Msa0625540:CDS
GCTCTTATAACATTAGGTTT+TGG 0.301990 4_3:-4627538 Msa0625540:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 4_3:+4625287 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 4_3:-4625353 Msa0625540:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 4_3:+4624755 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 4_3:-4627220 Msa0625540:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 4_3:-4625331 Msa0625540:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 4_3:+4625193 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 4_3:+4624747 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 4_3:+4625382 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 4_3:+4624773 None:intergenic
TTCATTGATTCATTCCAGTT+TGG 0.358871 4_3:+4627904 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 4_3:+4624735 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 4_3:+4625116 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 4_3:+4627145 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 4_3:+4624996 None:intergenic
AATGTGTGCGAACGAATAAT+TGG 0.388296 4_3:+4623548 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 4_3:+4627245 None:intergenic
TGTGCACTAGTAATTTGTTC+TGG 0.396713 4_3:+4623657 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 4_3:-4625125 Msa0625540:CDS
ATGATGTTACTCTCATTTGT+AGG 0.412623 4_3:-4627454 Msa0625540:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 4_3:-4623780 Msa0625540:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 4_3:+4625136 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 4_3:-4625482 Msa0625540:intron
CACAGTTCTTGAGGAAGAAA+AGG 0.428597 4_3:-4623638 Msa0625540:three_prime_UTR
TCGTTTACGCCGGCATTGGT+TGG 0.434274 4_3:-4627495 Msa0625540:CDS
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 4_3:-4623912 Msa0625540:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 4_3:-4627357 Msa0625540:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 4_3:-4627208 Msa0625540:CDS
TCGTCGTCAACTTACCAAAC+TGG 0.447014 4_3:-4627918 None:intergenic
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 4_3:-4623781 Msa0625540:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 4_3:+4627430 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 4_3:+4625391 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 4_3:-4627322 Msa0625540:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 4_3:+4624774 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 4_3:+4624997 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 4_3:+4625143 None:intergenic
GTAAGCACCAATTAACATTC+CGG 0.476951 4_3:+4627363 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 4_3:+4625432 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 4_3:-4627610 Msa0625540:intron
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 4_3:+4623764 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 4_3:-4627356 Msa0625540:CDS
GTTCTCGTTTACGCCGGCAT+TGG 0.492913 4_3:-4627499 Msa0625540:CDS
AAAAGGAGAGGGAAGAAGTT+CGG 0.496639 4_3:-4623621 Msa0625540:three_prime_UTR
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 4_3:+4625374 None:intergenic
TTCTGAAATCCAACCAATGC+CGG 0.499012 4_3:+4627486 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 4_3:-4625144 Msa0625540:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 4_3:+4625023 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 4_3:-4624758 Msa0625540:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 4_3:-4625382 Msa0625540:CDS
CCATATTCCATATACTTGAA+TGG 0.516463 4_3:-4627738 Msa0625540:intron
TGGTTGGATTTCAGAAGCAA+TGG 0.517985 4_3:-4627479 Msa0625540:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 4_3:-4623909 Msa0625540:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 4_3:+4625469 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 4_3:-4627157 Msa0625540:CDS
TGAACATGGTTAATTTAAGG+AGG 0.535787 4_3:-4623457 Msa0625540:three_prime_UTR
GCTACTGTTACTGCTACTGC+CGG 0.538066 4_3:-4627286 Msa0625540:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 4_3:+4625431 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 4_3:+4623774 None:intergenic
TTACTAGTGCACAGTTCTTG+AGG 0.540007 4_3:-4623647 Msa0625540:three_prime_UTR
TATGAAACTTTCTTGATGAG+AGG 0.540801 4_3:+4627402 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 4_3:-4627150 Msa0625540:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 4_3:-4623921 Msa0625540:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 4_3:+4625244 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 4_3:-4627211 Msa0625540:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 4_3:+4625427 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 4_3:-4623892 Msa0625540:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 4_3:-4623882 Msa0625540:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 4_3:+4627132 None:intergenic
GATAGAATGTTAATGGGAGA+AGG 0.555946 4_3:+4624780 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 4_3:-4625208 Msa0625540:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 4_3:-4625187 Msa0625540:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 4_3:+4624847 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 4_3:+4623926 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 4_3:+4627151 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 4_3:-4623883 Msa0625540:CDS
CAATGAAAATAAAATGAACA+TGG 0.569553 4_3:-4623471 Msa0625540:three_prime_UTR
CTCCCAAACCAAGACCAACA+AGG 0.572336 4_3:+4627212 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 4_3:+4627184 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 4_3:-4624848 Msa0625540:CDS
GAACATGGTTAATTTAAGGA+GGG 0.576006 4_3:-4623456 Msa0625540:three_prime_UTR
GAGCTACAATTACAAACAGA+AGG 0.576404 4_3:+4623826 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 4_3:-4627595 Msa0625540:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 4_3:-4625481 Msa0625540:CDS
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 4_3:+4624866 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 4_3:+4627407 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 4_3:+4625426 None:intergenic
AATCATCAAAGGTAACTTCG+AGG 0.583187 4_3:-4623423 Msa0625540:three_prime_UTR
TCCCAAACCAAGACCAACAA+GGG 0.583537 4_3:+4627213 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 4_3:-4624858 Msa0625540:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 4_3:-4625471 Msa0625540:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 4_3:-4627355 Msa0625540:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 4_3:+4623876 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 4_3:-4623922 Msa0625540:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 4_3:-4627432 Msa0625540:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 4_3:-4623945 Msa0625540:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 4_3:-4624998 Msa0625540:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 4_3:+4623944 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 4_3:-4627189 Msa0625540:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 4_3:-4627330 Msa0625540:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 4_3:+4624858 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.607966 4_3:-4627146 Msa0625540:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 4_3:+4625068 None:intergenic
GCAAGTAGCCAAATCATCAA+AGG 0.614035 4_3:-4623434 Msa0625540:three_prime_UTR
TCTTGAGGAAGAAAAGGAGA+GGG 0.618954 4_3:-4623632 Msa0625540:three_prime_UTR
ATTGTCAGAAATAAGGACAC+CGG 0.619613 4_3:+4625294 None:intergenic
TTCTTGAGGAAGAAAAGGAG+AGG 0.623780 4_3:-4623633 Msa0625540:three_prime_UTR
TGACAACCCTTCAGAAGACA+CGG 0.630940 4_3:-4625251 Msa0625540:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 4_3:-4623939 Msa0625540:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 4_3:-4627334 Msa0625540:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 4_3:-4625014 Msa0625540:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 4_3:+4623945 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 4_3:+4625117 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 4_3:+4625245 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 4_3:+4625298 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 4_3:-4625477 Msa0625540:CDS
GTAGCAGTGGGTTTAGTACA+CGG 0.644415 4_3:-4623870 Msa0625540:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 4_3:+4627150 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 4_3:-4627609 Msa0625540:intron
ATAAATATACACGATTGTGA+AGG 0.658702 4_3:+4624700 None:intergenic
ATACTCGTTCTCGTTTACGC+CGG 0.663285 4_3:-4627505 Msa0625540:CDS
GCTTGCGACTCCGACACCGG+TGG 0.668961 4_3:+4623929 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 4_3:-4624690 Msa0625540:intron
TCATCATGTCTACACATCGT+CGG 0.680005 4_3:+4623719 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 4_3:-4624759 Msa0625540:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 4_3:+4627246 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 4_3:-4627608 Msa0625540:intron
GCATAAAGACATTACCTCTG+GGG 0.717940 4_3:+4624676 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 4_3:+4627174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATTGAAAAGT+TGG - chr4_3:4624355-4624374 Msa0625540:intron 10.0%
!! TATAAGAAAAGATAGAAATA+TGG - chr4_3:4624497-4624516 Msa0625540:intron 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG + chr4_3:4625354-4625373 None:intergenic 15.0%
!! ATTAGAACTAAATTAAATCA+AGG + chr4_3:4625428-4625447 None:intergenic 15.0%
!! TTTACAACTATTTAAATTGA+GGG + chr4_3:4625515-4625534 None:intergenic 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG - chr4_3:4625515-4625534 Msa0625540:intron 15.0%
!!! TTAATTAATTTTGAATGATC+TGG - chr4_3:4626690-4626709 Msa0625540:intron 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG + chr4_3:4627096-4627115 None:intergenic 15.0%
!! AGAAAAAATAAAGCAAATTA+TGG - chr4_3:4627096-4627115 Msa0625540:CDS 15.0%
!!! TTTTTTTTAGTAAATTGTAG+AGG - chr4_3:4627831-4627850 Msa0625540:five_prime_UTR 15.0%
!!! TTTTTTTAGTAAATTGTAGA+GGG - chr4_3:4627832-4627851 Msa0625540:five_prime_UTR 15.0%
!! AATACATTATTATAGATGAC+AGG - chr4_3:4623725-4623744 Msa0625540:exon 20.0%
!! ATACATTATTATAGATGACA+GGG - chr4_3:4623726-4623745 Msa0625540:exon 20.0%
!! ATATATAATTGAAAAGTTGG+TGG - chr4_3:4624358-4624377 Msa0625540:intron 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG + chr4_3:4624489-4624508 None:intergenic 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG - chr4_3:4624879-4624898 Msa0625540:intron 20.0%
!! AAATTAAATCAAGGAGATTT+GGG + chr4_3:4625419-4625438 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG + chr4_3:4625420-4625439 None:intergenic 20.0%
!! GTTTACAACTATTTAAATTG+AGG + chr4_3:4625516-4625535 None:intergenic 20.0%
!!! TATACATTACTTAAGTCTTT+TGG + chr4_3:4625602-4625621 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG + chr4_3:4626145-4626164 None:intergenic 20.0%
!! AAAGGAATGATTTCTAATTT+AGG - chr4_3:4626145-4626164 Msa0625540:intron 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG + chr4_3:4626838-4626857 None:intergenic 20.0%
!! AGAAGAATGTTATTATCTTA+AGG - chr4_3:4626874-4626893 Msa0625540:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG - chr4_3:4626875-4626894 Msa0625540:intron 20.0%
!! AAGAATGTTATTATCTTAAG+GGG - chr4_3:4626876-4626895 Msa0625540:intron 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG - chr4_3:4627004-4627023 Msa0625540:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG - chr4_3:4627324-4627343 Msa0625540:CDS 20.0%
!! TAATTCTTCTTTATAAATGG+TGG - chr4_3:4627327-4627346 Msa0625540:CDS 20.0%
!!! TTTTTTAGTAAATTGTAGAG+GGG - chr4_3:4627833-4627852 Msa0625540:five_prime_UTR 20.0%
!! CAATGAAAATAAAATGAACA+TGG - chr4_3:4627864-4627883 Msa0625540:five_prime_UTR 20.0%
!! AAATGAACATGGTTAATTTA+AGG - chr4_3:4627875-4627894 Msa0625540:five_prime_UTR 20.0%
! TTTAGATTCATTCAACTTTC+TGG - chr4_3:4623486-4623505 Msa0625540:three_prime_UTR 25.0%
! TACATTATTATAGATGACAG+GGG - chr4_3:4623727-4623746 Msa0625540:exon 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG - chr4_3:4624822-4624841 Msa0625540:CDS 25.0%
! AAGTATGTAAGGAAAGAATA+CGG - chr4_3:4624833-4624852 Msa0625540:CDS 25.0%
!! CAATGTGTTTTACTTAACAA+AGG - chr4_3:4624878-4624897 Msa0625540:intron 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG - chr4_3:4624880-4624899 Msa0625540:intron 25.0%
! AAATAAAGGCTTAAGCAAAT+TGG + chr4_3:4625340-4625359 None:intergenic 25.0%
!! TTCAAATTTTGAACTTACCT+AGG - chr4_3:4625358-4625377 Msa0625540:CDS 25.0%
! TAAAATTCTTTCTTGCATGA+AGG + chr4_3:4625485-4625504 None:intergenic 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG + chr4_3:4625922-4625941 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG + chr4_3:4626051-4626070 None:intergenic 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG + chr4_3:4626120-4626139 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG - chr4_3:4626244-4626263 Msa0625540:intron 25.0%
! ATAAATATACACGATTGTGA+AGG + chr4_3:4626638-4626657 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG + chr4_3:4626772-4626791 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG - chr4_3:4626800-4626819 Msa0625540:intron 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG + chr4_3:4626833-4626852 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG - chr4_3:4626950-4626969 Msa0625540:intron 25.0%
! AACAAATTCCGTAAAAGAAT+TGG + chr4_3:4627015-4627034 None:intergenic 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG + chr4_3:4627132-4627151 None:intergenic 25.0%
! AATTCAAAAACAATGAGGTA+GGG + chr4_3:4627185-4627204 None:intergenic 25.0%
! TAATTCAAAAACAATGAGGT+AGG + chr4_3:4627186-4627205 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG + chr4_3:4627190-4627209 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG - chr4_3:4627220-4627239 Msa0625540:CDS 25.0%
! AATAGTTCCTATCTAATAAC+TGG + chr4_3:4627251-4627270 None:intergenic 25.0%
!! ACACATTCTTTTTATGTGTT+TGG - chr4_3:4627803-4627822 Msa0625540:five_prime_UTR 25.0%
!! TTCATTGATTCATTCCAGTT+TGG + chr4_3:4623434-4623453 None:intergenic 30.0%
CCATTCAAGTATATGGAATA+TGG + chr4_3:4623600-4623619 None:intergenic 30.0%
CCATATTCCATATACTTGAA+TGG - chr4_3:4623597-4623616 Msa0625540:three_prime_UTR 30.0%
GATGAAGCTCTTATAACATT+AGG - chr4_3:4623791-4623810 Msa0625540:CDS 30.0%
! GCTCTTATAACATTAGGTTT+TGG - chr4_3:4623797-4623816 Msa0625540:CDS 30.0%
ATGATGTTACTCTCATTTGT+AGG - chr4_3:4623881-4623900 Msa0625540:CDS 30.0%
TATGAAACTTTCTTGATGAG+AGG + chr4_3:4623936-4623955 None:intergenic 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG - chr4_3:4623953-4623972 Msa0625540:CDS 30.0%
!! TTGAAAAGTTGGTGGAAATT+AGG - chr4_3:4624366-4624385 Msa0625540:intron 30.0%
!! TGAAAAGTTGGTGGAAATTA+GGG - chr4_3:4624367-4624386 Msa0625540:intron 30.0%
AAATTAGGGTTAAGTGGTTT+GGG - chr4_3:4624381-4624400 Msa0625540:intron 30.0%
AGTCAAATCACTATTTACAG+AGG - chr4_3:4624459-4624478 Msa0625540:intron 30.0%
! GTCTCATTTTGTTACATTTG+CGG + chr4_3:4624745-4624764 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG - chr4_3:4624750-4624769 Msa0625540:CDS 30.0%
AGTTGGTTAGTATTTAGATG+AGG - chr4_3:4624773-4624792 Msa0625540:CDS 30.0%
AATATAGTGAGTAGTGAGAT+AGG - chr4_3:4624798-4624817 Msa0625540:CDS 30.0%
! TTGATATTAAGGCTTTGTCT+GGG - chr4_3:4624951-4624970 Msa0625540:intron 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG - chr4_3:4625019-4625038 Msa0625540:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG + chr4_3:4625183-4625202 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG - chr4_3:4625181-4625200 Msa0625540:CDS 30.0%
GGCTAAATGATGAAAGTAAA+TGG + chr4_3:4625680-4625699 None:intergenic 30.0%
TTACTTTCATCATTTAGCCT+AGG - chr4_3:4625681-4625700 Msa0625540:intron 30.0%
! TTATGGCTTTACTTGTCTTA+AGG - chr4_3:4625710-4625729 Msa0625540:intron 30.0%
TGACAAATCATAGAGATGAT+GGG - chr4_3:4625808-4625827 Msa0625540:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG + chr4_3:4626119-4626138 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG + chr4_3:4626121-4626140 None:intergenic 30.0%
GGAATGATTTCTAATTTAGG+TGG - chr4_3:4626148-4626167 Msa0625540:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG + chr4_3:4626284-4626303 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG - chr4_3:4626361-4626380 Msa0625540:intron 30.0%
!! TTGTTTTACTATACCATTCC+CGG - chr4_3:4626407-4626426 Msa0625540:intron 30.0%
AAACAAATGCAAACTATACC+TGG - chr4_3:4627147-4627166 Msa0625540:CDS 30.0%
!! TGATGACGTTTTATATACCT+CGG - chr4_3:4627633-4627652 Msa0625540:intron 30.0%
!! TTTTCATGATTTAAAGTCCG+AGG + chr4_3:4627653-4627672 None:intergenic 30.0%
TGAACATGGTTAATTTAAGG+AGG - chr4_3:4627878-4627897 Msa0625540:five_prime_UTR 30.0%
GAACATGGTTAATTTAAGGA+GGG - chr4_3:4627879-4627898 Msa0625540:five_prime_UTR 30.0%
GTACGTACCATTCAAGTATA+TGG + chr4_3:4623607-4623626 None:intergenic 35.0%
ATCTCAAATCGAATCGAAGA+TGG + chr4_3:4623685-4623704 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG + chr4_3:4623931-4623950 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG - chr4_3:4623965-4623984 Msa0625540:intron 35.0%
GTAAGCACCAATTAACATTC+CGG + chr4_3:4623975-4623994 None:intergenic 35.0%
! TGTTAATTGGTGCTTACTCA+TGG - chr4_3:4623978-4623997 Msa0625540:intron 35.0%
! GTTAATTGGTGCTTACTCAT+GGG - chr4_3:4623979-4623998 Msa0625540:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG - chr4_3:4623980-4623999 Msa0625540:intron 35.0%
!! TTGTTTCTGATCAACATGGA+AGG - chr4_3:4624005-4624024 Msa0625540:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG + chr4_3:4624071-4624090 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG + chr4_3:4624092-4624111 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG + chr4_3:4624093-4624112 None:intergenic 35.0%
ACAAGCAAGGAGACATAATT+TGG + chr4_3:4624094-4624113 None:intergenic 35.0%
AACAAATTCAAGAAACCACG+AGG + chr4_3:4624164-4624183 None:intergenic 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG - chr4_3:4624245-4624264 Msa0625540:intron 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG - chr4_3:4624246-4624265 Msa0625540:intron 35.0%
GAAATTAGGGTTAAGTGGTT+TGG - chr4_3:4624380-4624399 Msa0625540:intron 35.0%
ATCGTGTATCATTGTAACAG+AGG + chr4_3:4624648-4624667 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG - chr4_3:4624694-4624713 Msa0625540:CDS 35.0%
! TCATTTTGTTACATTTGCGG+AGG + chr4_3:4624742-4624761 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG - chr4_3:4624756-4624775 Msa0625540:CDS 35.0%
AATACGGATCTCTTGAATCA+AGG - chr4_3:4624849-4624868 Msa0625540:CDS 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG + chr4_3:4624914-4624933 None:intergenic 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG - chr4_3:4624912-4624931 Msa0625540:intron 35.0%
GCAATATCGCCTTGATATTA+AGG - chr4_3:4624940-4624959 Msa0625540:intron 35.0%
CAGACAAAGCCTTAATATCA+AGG + chr4_3:4624952-4624971 None:intergenic 35.0%
! CTTGATATTAAGGCTTTGTC+TGG - chr4_3:4624950-4624969 Msa0625540:intron 35.0%
ACCAAAACCCTTCAATATGT+AGG - chr4_3:4625042-4625061 Msa0625540:CDS 35.0%
! TCCTACATATTGAAGGGTTT+TGG + chr4_3:4625046-4625065 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG + chr4_3:4625052-4625071 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG + chr4_3:4625053-4625072 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG - chr4_3:4625056-4625075 Msa0625540:CDS 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG + chr4_3:4625178-4625197 None:intergenic 35.0%
! CTACTAGTTTAACTGCAAAC+TGG + chr4_3:4625271-4625290 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG - chr4_3:4625366-4625385 Msa0625540:CDS 35.0%
TTCTTGCATGAAGGAATGAT+AGG + chr4_3:4625476-4625495 None:intergenic 35.0%
! GTTAATTGTTGGCTACACAT+AGG + chr4_3:4625577-4625596 None:intergenic 35.0%
! GTCTTTTGGCAGTTAATTGT+TGG + chr4_3:4625588-4625607 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG - chr4_3:4625693-4625712 Msa0625540:intron 35.0%
TAAAGCCATAACAGTTTCCT+AGG + chr4_3:4625701-4625720 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG + chr4_3:4625809-4625828 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG - chr4_3:4625807-4625826 Msa0625540:intron 35.0%
AACAGAAGAAGGAAAGATGT+GGG + chr4_3:4625911-4625930 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG + chr4_3:4625912-4625931 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG + chr4_3:4625964-4625983 None:intergenic 35.0%
! AACTGAAGCAACTAACGTTT+TGG - chr4_3:4625982-4626001 Msa0625540:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG - chr4_3:4626004-4626023 Msa0625540:intron 35.0%
AATGGCAAAAAACTTCCTTC+CGG - chr4_3:4626022-4626041 Msa0625540:intron 35.0%
ATTGTCAGAAATAAGGACAC+CGG + chr4_3:4626044-4626063 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG - chr4_3:4626127-4626146 Msa0625540:intron 35.0%
TCCTTTCACCCAAATTATCA+AGG - chr4_3:4626191-4626210 Msa0625540:intron 35.0%
! ACCTTGATAATTTGGGTGAA+AGG + chr4_3:4626195-4626214 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG + chr4_3:4626202-4626221 None:intergenic 35.0%
! AAGGGTTGACCTTGATAATT+TGG + chr4_3:4626203-4626222 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG - chr4_3:4626210-4626229 Msa0625540:intron 35.0%
AAACACTGCCCATAATAGAA+GGG + chr4_3:4626221-4626240 None:intergenic 35.0%
AAAACACTGCCCATAATAGA+AGG + chr4_3:4626222-4626241 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG - chr4_3:4626223-4626242 Msa0625540:intron 35.0%
TCTCTGTCTGCAATTTATCT+GGG + chr4_3:4626315-4626334 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG + chr4_3:4626316-4626335 None:intergenic 35.0%
ACCTTTGTAACTTACATCCT+GGG + chr4_3:4626341-4626360 None:intergenic 35.0%
! TGTTTTACTATACCATTCCC+GGG - chr4_3:4626408-4626427 Msa0625540:intron 35.0%
GATAGAATGTTAATGGGAGA+AGG + chr4_3:4626558-4626577 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG + chr4_3:4626564-4626583 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG + chr4_3:4626565-4626584 None:intergenic 35.0%
ATATGCGAGCTCCAAATAAA+AGG + chr4_3:4626603-4626622 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG + chr4_3:4626663-4626682 None:intergenic 35.0%
TTGCATAAAGACATTACCTC+TGG + chr4_3:4626664-4626683 None:intergenic 35.0%
GAGAAATCTTGTGCATTCTT+CGG - chr4_3:4626731-4626750 Msa0625540:intron 35.0%
CACAGAGAACTAACTTTGTA+AGG + chr4_3:4627054-4627073 None:intergenic 35.0%
CTTTCGTCATGTATAAGACA+TGG - chr4_3:4627281-4627300 Msa0625540:CDS 35.0%
! GGTTTCACAGCAATGTTTTT+CGG - chr4_3:4627302-4627321 Msa0625540:CDS 35.0%
GAGCTACAATTACAAACAGA+AGG + chr4_3:4627512-4627531 None:intergenic 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG - chr4_3:4627519-4627538 Msa0625540:CDS 35.0%
!! TGTGCACTAGTAATTTGTTC+TGG + chr4_3:4627681-4627700 None:intergenic 35.0%
AATGTGTGCGAACGAATAAT+TGG + chr4_3:4627790-4627809 None:intergenic 35.0%
! CGAAGTTACCTTTGATGATT+TGG + chr4_3:4627912-4627931 None:intergenic 35.0%
AATCATCAAAGGTAACTTCG+AGG - chr4_3:4627912-4627931 Msa0625540:five_prime_UTR 35.0%
!! TTCTGAAATCCAACCAATGC+CGG + chr4_3:4623852-4623871 None:intergenic 40.0%
TGGTTGGATTTCAGAAGCAA+TGG - chr4_3:4623856-4623875 Msa0625540:CDS 40.0%
!! GGCATTGTTTCTGATCAACA+TGG - chr4_3:4624001-4624020 Msa0625540:intron 40.0%
GATCAACATGGAAGGAGAAA+AGG - chr4_3:4624013-4624032 Msa0625540:intron 40.0%
AAGGGAACGAAAAACAAGCA+AGG + chr4_3:4624107-4624126 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG - chr4_3:4624109-4624128 Msa0625540:intron 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG - chr4_3:4624209-4624228 Msa0625540:intron 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG - chr4_3:4624217-4624236 Msa0625540:intron 40.0%
TGTACCAACAGTCCAAAAAC+CGG + chr4_3:4624224-4624243 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG - chr4_3:4624375-4624394 Msa0625540:intron 40.0%
!! TCAAGTTTTATCGCACCAAG+TGG + chr4_3:4624568-4624587 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG + chr4_3:4624639-4624658 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG + chr4_3:4624693-4624712 None:intergenic 40.0%
TCTACACTAGGAGAGAAAAG+AGG - chr4_3:4624706-4624725 Msa0625540:CDS 40.0%
GGATCTCTTGAATCAAGGAA+AGG - chr4_3:4624854-4624873 Msa0625540:CDS 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG - chr4_3:4624908-4624927 Msa0625540:intron 40.0%
ATATTGCACTCACCTTCCTT+TGG + chr4_3:4624927-4624946 None:intergenic 40.0%
AAAAACCTCCACACAAGATG+GGG + chr4_3:4625009-4625028 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG + chr4_3:4625010-4625029 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG + chr4_3:4625011-4625030 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG - chr4_3:4625069-4625088 Msa0625540:CDS 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG + chr4_3:4625228-4625247 None:intergenic 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG + chr4_3:4625232-4625251 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG + chr4_3:4625250-4625269 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG + chr4_3:4625378-4625397 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG - chr4_3:4625378-4625397 Msa0625540:CDS 40.0%
TGCATGAAGGAATGATAGGA+AGG + chr4_3:4625472-4625491 None:intergenic 40.0%
! ATTGTTGGCTACACATAGGA+AGG + chr4_3:4625573-4625592 None:intergenic 40.0%
TCTGCAAGGAACATTGCATT+GGG + chr4_3:4625838-4625857 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG + chr4_3:4625839-4625858 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG + chr4_3:4625906-4625925 None:intergenic 40.0%
CCTTTCAAGCATAGGTATCT+TGG + chr4_3:4625956-4625975 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG - chr4_3:4625953-4625972 Msa0625540:intron 40.0%
GTAAAACCGTGTCTTCTGAA+GGG + chr4_3:4626093-4626112 None:intergenic 40.0%
AGTAAAACCGTGTCTTCTGA+AGG + chr4_3:4626094-4626113 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG - chr4_3:4626209-4626228 Msa0625540:intron 40.0%
TCCCAGGATGTAAGTTACAA+AGG - chr4_3:4626337-4626356 Msa0625540:intron 40.0%
CACCTTTGTAACTTACATCC+TGG + chr4_3:4626342-4626361 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG + chr4_3:4626423-4626442 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG + chr4_3:4626428-4626447 None:intergenic 40.0%
GGCATCAATCATACATTTCC+CGG + chr4_3:4626429-4626448 None:intergenic 40.0%
! GTAGCTCTGTGCACAAAATT+TGG + chr4_3:4626450-4626469 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG + chr4_3:4626491-4626510 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG + chr4_3:4626591-4626610 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG - chr4_3:4626589-4626608 Msa0625540:intron 40.0%
GCATAAAGACATTACCTCTG+GGG + chr4_3:4626662-4626681 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG + chr4_3:4627168-4627187 None:intergenic 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG + chr4_3:4627230-4627249 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG - chr4_3:4627241-4627260 Msa0625540:CDS 40.0%
TGGTGGAATGTTATGTCCAT+TGG - chr4_3:4627443-4627462 Msa0625540:CDS 40.0%
! TTATGTCCATTGGTAGCAGT+GGG - chr4_3:4627453-4627472 Msa0625540:CDS 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG - chr4_3:4627555-4627574 Msa0625540:CDS 40.0%
ACACAGTATCTTGCAGTTCT+TGG + chr4_3:4627581-4627600 None:intergenic 40.0%
TCATCATGTCTACACATCGT+CGG + chr4_3:4627619-4627638 None:intergenic 40.0%
TTACTAGTGCACAGTTCTTG+AGG - chr4_3:4627688-4627707 Msa0625540:intron 40.0%
CACAGTTCTTGAGGAAGAAA+AGG - chr4_3:4627697-4627716 Msa0625540:intron 40.0%
TTCTTGAGGAAGAAAAGGAG+AGG - chr4_3:4627702-4627721 Msa0625540:intron 40.0%
TCTTGAGGAAGAAAAGGAGA+GGG - chr4_3:4627703-4627722 Msa0625540:intron 40.0%
AAAAGGAGAGGGAAGAAGTT+CGG - chr4_3:4627714-4627733 Msa0625540:intron 40.0%
GCAAGTAGCCAAATCATCAA+AGG - chr4_3:4627901-4627920 Msa0625540:five_prime_UTR 40.0%
ATGACAGGGGAAGAAGTTGA+AGG - chr4_3:4623740-4623759 Msa0625540:CDS 45.0%
ATACTCGTTCTCGTTTACGC+CGG - chr4_3:4623830-4623849 Msa0625540:CDS 45.0%
TTCCATGCAGATTGAACTGC+AGG + chr4_3:4623908-4623927 None:intergenic 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG - chr4_3:4624115-4624134 Msa0625540:intron 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG - chr4_3:4624120-4624139 Msa0625540:intron 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG - chr4_3:4624121-4624140 Msa0625540:intron 45.0%
TCCCAAACCAAGACCAACAA+GGG + chr4_3:4624125-4624144 None:intergenic 45.0%
TTTGTTCCCGCTCCTAATAG+AGG - chr4_3:4624178-4624197 Msa0625540:intron 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG - chr4_3:4624189-4624208 Msa0625540:intron 45.0%
ACCATCCAGGTACCTCTATT+AGG + chr4_3:4624193-4624212 None:intergenic 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG - chr4_3:4624202-4624221 Msa0625540:intron 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG - chr4_3:4624431-4624450 Msa0625540:intron 45.0%
TTTATCGCACCAAGTGGAGT+CGG + chr4_3:4624562-4624581 None:intergenic 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG - chr4_3:4624958-4624977 Msa0625540:intron 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG - chr4_3:4624963-4624982 Msa0625540:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG - chr4_3:4624968-4624987 Msa0625540:intron 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG - chr4_3:4624974-4624993 Msa0625540:intron 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG - chr4_3:4624975-4624994 Msa0625540:CDS 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG - chr4_3:4624976-4624995 Msa0625540:CDS 45.0%
TGTAGGAAACGTGTTGAAGG+AGG - chr4_3:4625059-4625078 Msa0625540:CDS 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG - chr4_3:4625068-4625087 Msa0625540:CDS 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG + chr4_3:4625223-4625242 None:intergenic 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG + chr4_3:4625229-4625248 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG - chr4_3:4625387-4625406 Msa0625540:CDS 45.0%
TCTTGGCATCACAATCTGCA+AGG + chr4_3:4625852-4625871 None:intergenic 45.0%
CAGATTGTGATGCCAAGACT+GGG - chr4_3:4625854-4625873 Msa0625540:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG + chr4_3:4625907-4625926 None:intergenic 45.0%
! CATAGGTATCTTGGTGACTC+TGG + chr4_3:4625947-4625966 None:intergenic 45.0%
TCAGAAATAAGGACACCGGA+AGG + chr4_3:4626040-4626059 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG - chr4_3:4626084-4626103 Msa0625540:intron 45.0%
ACTCAGAGGTCAGCAAAACA+AGG + chr4_3:4626270-4626289 None:intergenic 45.0%
! ATTTTGTGCACAGAGCTACC+TGG - chr4_3:4626451-4626470 Msa0625540:intron 45.0%
! TTTTGTGCACAGAGCTACCT+GGG - chr4_3:4626452-4626471 Msa0625540:intron 45.0%
TCTGCCTGAAGACCTAACAA+CGG - chr4_3:4626576-4626595 Msa0625540:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG - chr4_3:4626645-4626664 Msa0625540:intron 45.0%
! GTTATGTCCATTGGTAGCAG+TGG - chr4_3:4627452-4627471 Msa0625540:CDS 45.0%
ACTAAACCCACTGCTACCAA+TGG + chr4_3:4627462-4627481 None:intergenic 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG - chr4_3:4627465-4627484 Msa0625540:CDS 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG - chr4_3:4627554-4627573 Msa0625540:CDS 45.0%
GTCCTGCAGTTCAATCTGCA+TGG - chr4_3:4623903-4623922 Msa0625540:CDS 50.0%
GCTACTGTTACTGCTACTGC+CGG - chr4_3:4624049-4624068 Msa0625540:intron 50.0%
CTCCCAAACCAAGACCAACA+AGG + chr4_3:4624126-4624145 None:intergenic 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG - chr4_3:4624124-4624143 Msa0625540:intron 50.0%
AGAAACCACGAGGACAAGAC+AGG + chr4_3:4624154-4624173 None:intergenic 50.0%
CAGGTACCTCTATTAGGAGC+GGG + chr4_3:4624187-4624206 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG + chr4_3:4624188-4624207 None:intergenic 50.0%
ACCGGAAAACACAACCATCC+AGG + chr4_3:4624206-4624225 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG + chr4_3:4624607-4624626 None:intergenic 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG - chr4_3:4624967-4624986 Msa0625540:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG - chr4_3:4624969-4624988 Msa0625540:intron 50.0%
GAGTAGATCCCCATCTTGTG+TGG - chr4_3:4624998-4625017 Msa0625540:CDS 50.0%
TAGATCCCCATCTTGTGTGG+AGG - chr4_3:4625001-4625020 Msa0625540:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG + chr4_3:4625218-4625237 None:intergenic 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG + chr4_3:4625219-4625238 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG + chr4_3:4625220-4625239 None:intergenic 50.0%
GGCTACACATAGGAAGGAAG+TGG + chr4_3:4625567-4625586 None:intergenic 50.0%
GCAGATTGTGATGCCAAGAC+TGG - chr4_3:4625853-4625872 Msa0625540:intron 50.0%
TTGTGATGCCAAGACTGGGT+TGG - chr4_3:4625858-4625877 Msa0625540:intron 50.0%
ATTGCAGACAGAGAAGTCCC+AGG - chr4_3:4626321-4626340 Msa0625540:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG - chr4_3:4626487-4626506 Msa0625540:intron 50.0%
CTGCCTGAAGACCTAACAAC+GGG - chr4_3:4626577-4626596 Msa0625540:intron 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG - chr4_3:4627423-4627442 Msa0625540:CDS 50.0%
AGCTCAGTGGGTAGAATTGG+TGG - chr4_3:4627426-4627445 Msa0625540:CDS 50.0%
TCTTGGCCCATGGTCTCAAA+CGG + chr4_3:4627564-4627583 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG + chr4_3:4627574-4627593 None:intergenic 50.0%
GTTCTCGTTTACGCCGGCAT+TGG - chr4_3:4623836-4623855 Msa0625540:CDS 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG - chr4_3:4623840-4623859 Msa0625540:CDS 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG - chr4_3:4624127-4624146 Msa0625540:intron 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG - chr4_3:4624185-4624204 Msa0625540:intron 55.0%
! TCCATGTAGCCGACTCCACT+TGG - chr4_3:4624550-4624569 Msa0625540:intron 55.0%
ACCAAGTGGAGTCGGCTACA+TGG + chr4_3:4624554-4624573 None:intergenic 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG - chr4_3:4625864-4625883 Msa0625540:intron 55.0%
AGCCATCTCCAACCCAGTCT+TGG + chr4_3:4625869-4625888 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG + chr4_3:4626583-4626602 None:intergenic 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG + chr4_3:4627393-4627412 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG - chr4_3:4627390-4627409 Msa0625540:CDS 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG + chr4_3:4627394-4627413 None:intergenic 55.0%
TCAGTCAGAACCACCGGTGT+CGG - chr4_3:4627396-4627415 Msa0625540:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG + chr4_3:4626480-4626499 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG - chr4_3:4626477-4626496 Msa0625540:intron 60.0%
TGAGCTTGCGACTCCGACAC+CGG + chr4_3:4627412-4627431 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG - chr4_3:4627413-4627432 Msa0625540:CDS 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG - chr4_3:4627414-4627433 Msa0625540:CDS 60.0%
GCGGTCCTGTCTTGTCCTCG+TGG - chr4_3:4624146-4624165 Msa0625540:intron 65.0%
ACGGCTGACAAGAGGAGCCC+AGG + chr4_3:4626472-4626491 None:intergenic 65.0%
GCTTGCGACTCCGACACCGG+TGG + chr4_3:4627409-4627428 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4623421 4627936 4623421 ID=Msa0625540;Name=Msa0625540
chr4_3 mRNA 4623421 4627936 4623421 ID=Msa0625540-mRNA-1;Parent=Msa0625540;Name=Msa0625540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=195|1|1|1|0.75|0.8|5|307|501
chr4_3 exon 4623421 4623973 4623421 ID=Msa0625540-mRNA-1:exon:1265;Parent=Msa0625540-mRNA-1
chr4_3 exon 4624691 4624893 4624691 ID=Msa0625540-mRNA-1:exon:1264;Parent=Msa0625540-mRNA-1
chr4_3 exon 4624975 4625500 4624975 ID=Msa0625540-mRNA-1:exon:1263;Parent=Msa0625540-mRNA-1
chr4_3 exon 4627090 4627617 4627090 ID=Msa0625540-mRNA-1:exon:1262;Parent=Msa0625540-mRNA-1
chr4_3 exon 4627739 4627936 4627739 ID=Msa0625540-mRNA-1:exon:1261;Parent=Msa0625540-mRNA-1
chr4_3 five_prime_UTR 4627742 4627936 4627742 ID=Msa0625540-mRNA-1:five_prime_utr;Parent=Msa0625540-mRNA-1
chr4_3 CDS 4627739 4627741 4627739 ID=Msa0625540-mRNA-1:cds;Parent=Msa0625540-mRNA-1
chr4_3 CDS 4627090 4627617 4627090 ID=Msa0625540-mRNA-1:cds;Parent=Msa0625540-mRNA-1
chr4_3 CDS 4624975 4625500 4624975 ID=Msa0625540-mRNA-1:cds;Parent=Msa0625540-mRNA-1
chr4_3 CDS 4624691 4624893 4624691 ID=Msa0625540-mRNA-1:cds;Parent=Msa0625540-mRNA-1
chr4_3 CDS 4623728 4623973 4623728 ID=Msa0625540-mRNA-1:cds;Parent=Msa0625540-mRNA-1
chr4_3 three_prime_UTR 4623421 4623727 4623421 ID=Msa0625540-mRNA-1:three_prime_utr;Parent=Msa0625540-mRNA-1
Gene Sequence

>Msa0625540

ATGATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACACGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>Msa0625540

MMTGEEVEGSSSSSSYTVDEALITLGFGNFQILVLVYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV*