Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049660 | XP_003604112.1 | 98.004 | 501 | 8 | 1 | 1 | 501 | 1 | 499 | 0.0 | 988 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049660 | sp|Q940M4|OCT7_ARATH | 66.734 | 493 | 159 | 4 | 10 | 497 | 2 | 494 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049660 | G7JUE8 | 98.004 | 501 | 8 | 1 | 1 | 501 | 1 | 499 | 0.0 | 988 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049660 | Msa0228350 | 0.997261 | 1.736258e-239 | -8.615850e-47 |
| Msa0049660 | Msa0272410 | 0.802816 | 4.688907e-49 | -8.615850e-47 |
| Msa0049660 | Msa0577950 | 0.998003 | 7.158795e-254 | -8.615850e-47 |
| Msa0049660 | Msa0625540 | 0.993797 | 2.700203e-202 | -8.615850e-47 |
| Msa0049660 | Msa1374200 | 0.997339 | 8.367352e-241 | -8.615850e-47 |
| Msa0049660 | Msa1386010 | 0.802410 | 5.684849e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049660 | MtrunA17_Chr4g0000061 | 98.004 | 501 | 8 | 1 | 1 | 501 | 1 | 499 | 0.0 | 988 |
| Msa0049660 | MtrunA17_Chr2g0319001 | 28.132 | 455 | 276 | 17 | 56 | 496 | 106 | 523 | 2.19e-31 | 127 |
| Msa0049660 | MtrunA17_Chr4g0042131 | 27.059 | 425 | 251 | 16 | 88 | 501 | 44 | 420 | 5.49e-27 | 113 |
| Msa0049660 | MtrunA17_Chr2g0319011 | 27.044 | 318 | 185 | 14 | 185 | 491 | 27 | 308 | 1.21e-19 | 89.7 |
| Msa0049660 | MtrunA17_Chr8g0356471 | 26.190 | 462 | 270 | 18 | 58 | 501 | 112 | 520 | 6.17e-19 | 89.7 |
| Msa0049660 | MtrunA17_Chr5g0432581 | 22.318 | 466 | 293 | 15 | 59 | 490 | 47 | 477 | 1.67e-17 | 85.1 |
| Msa0049660 | MtrunA17_Chr4g0021771 | 24.138 | 464 | 271 | 18 | 59 | 490 | 83 | 497 | 7.54e-17 | 83.2 |
| Msa0049660 | MtrunA17_Chr4g0036021 | 24.018 | 433 | 275 | 15 | 83 | 490 | 79 | 482 | 1.85e-15 | 79.0 |
| Msa0049660 | MtrunA17_Chr8g0373531 | 22.926 | 458 | 300 | 15 | 59 | 490 | 47 | 477 | 2.17e-15 | 78.6 |
| Msa0049660 | MtrunA17_Chr2g0303731 | 25.856 | 263 | 183 | 7 | 7 | 261 | 1 | 259 | 8.84e-15 | 77.0 |
| Msa0049660 | MtrunA17_Chr1g0186831 | 23.404 | 517 | 302 | 23 | 30 | 488 | 20 | 500 | 1.41e-14 | 76.3 |
| Msa0049660 | MtrunA17_Chr8g0390521 | 24.213 | 413 | 240 | 13 | 59 | 440 | 46 | 416 | 5.01e-14 | 74.3 |
| Msa0049660 | MtrunA17_Chr8g0376611 | 28.372 | 215 | 146 | 5 | 71 | 281 | 2 | 212 | 1.69e-13 | 72.8 |
| Msa0049660 | MtrunA17_Chr3g0144361 | 22.294 | 462 | 298 | 12 | 59 | 490 | 56 | 486 | 2.05e-13 | 72.4 |
| Msa0049660 | MtrunA17_Chr7g0250881 | 26.761 | 213 | 135 | 6 | 70 | 272 | 106 | 307 | 2.86e-13 | 72.0 |
| Msa0049660 | MtrunA17_Chr6g0485661 | 22.388 | 402 | 260 | 11 | 59 | 440 | 86 | 455 | 1.52e-12 | 69.7 |
| Msa0049660 | MtrunA17_Chr4g0004821 | 28.643 | 199 | 118 | 5 | 70 | 259 | 77 | 260 | 1.79e-12 | 69.3 |
| Msa0049660 | MtrunA17_Chr1g0213631 | 29.167 | 168 | 115 | 3 | 91 | 255 | 48 | 214 | 2.15e-12 | 68.9 |
| Msa0049660 | MtrunA17_Chr4g0034681 | 22.936 | 436 | 287 | 14 | 82 | 494 | 81 | 490 | 3.85e-12 | 68.6 |
| Msa0049660 | MtrunA17_Chr5g0434231 | 30.625 | 160 | 87 | 3 | 71 | 229 | 5 | 141 | 4.03e-12 | 64.3 |
| Msa0049660 | MtrunA17_Chr6g0486021 | 27.650 | 217 | 132 | 6 | 58 | 264 | 79 | 280 | 5.74e-12 | 67.8 |
| Msa0049660 | MtrunA17_Chr8g0376631 | 27.638 | 199 | 132 | 7 | 89 | 281 | 87 | 279 | 1.00e-11 | 67.4 |
| Msa0049660 | MtrunA17_Chr7g0214451 | 28.144 | 167 | 116 | 3 | 89 | 252 | 94 | 259 | 2.74e-11 | 65.9 |
| Msa0049660 | MtrunA17_Chr7g0259471 | 26.368 | 201 | 143 | 3 | 58 | 257 | 67 | 263 | 3.56e-11 | 65.5 |
| Msa0049660 | MtrunA17_Chr2g0284271 | 63.636 | 44 | 16 | 0 | 437 | 480 | 1 | 44 | 3.68e-11 | 58.2 |
| Msa0049660 | MtrunA17_Chr2g0282031 | 24.631 | 203 | 139 | 4 | 59 | 257 | 81 | 273 | 4.79e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049660 | AT3G13050.2 | 66.734 | 493 | 159 | 4 | 10 | 497 | 2 | 494 | 0.0 | 606 |
| Msa0049660 | AT3G13050.4 | 66.734 | 493 | 159 | 4 | 10 | 497 | 2 | 494 | 0.0 | 606 |
| Msa0049660 | AT3G13050.1 | 66.734 | 493 | 159 | 4 | 10 | 497 | 2 | 494 | 0.0 | 606 |
| Msa0049660 | AT3G13050.3 | 66.734 | 493 | 159 | 4 | 10 | 497 | 2 | 494 | 0.0 | 606 |
| Msa0049660 | AT3G20660.1 | 26.007 | 546 | 298 | 20 | 5 | 499 | 24 | 514 | 4.43e-32 | 129 |
| Msa0049660 | AT3G18830.1 | 22.951 | 427 | 291 | 10 | 82 | 490 | 87 | 493 | 4.12e-17 | 84.7 |
| Msa0049660 | AT2G16130.1 | 24.464 | 466 | 289 | 15 | 59 | 493 | 54 | 487 | 1.70e-16 | 82.4 |
| Msa0049660 | AT1G67300.2 | 25.781 | 384 | 226 | 10 | 70 | 437 | 92 | 432 | 7.39e-16 | 80.5 |
| Msa0049660 | AT2G16120.1 | 24.406 | 463 | 287 | 15 | 59 | 490 | 54 | 484 | 1.37e-15 | 79.7 |
| Msa0049660 | AT1G73220.1 | 23.207 | 474 | 284 | 17 | 53 | 501 | 113 | 531 | 1.54e-15 | 79.7 |
| Msa0049660 | AT1G67300.1 | 25.849 | 383 | 226 | 10 | 70 | 437 | 92 | 431 | 4.06e-15 | 78.2 |
| Msa0049660 | AT1G67300.3 | 25.849 | 383 | 226 | 10 | 70 | 437 | 92 | 431 | 4.06e-15 | 78.2 |
| Msa0049660 | AT1G67300.6 | 25.849 | 383 | 226 | 10 | 70 | 437 | 92 | 431 | 4.51e-15 | 77.8 |
| Msa0049660 | AT1G67300.7 | 25.849 | 383 | 226 | 10 | 70 | 437 | 92 | 431 | 4.51e-15 | 77.8 |
| Msa0049660 | AT1G67300.4 | 25.936 | 374 | 219 | 10 | 70 | 428 | 92 | 422 | 1.06e-14 | 76.6 |
| Msa0049660 | AT1G67300.5 | 25.936 | 374 | 219 | 10 | 70 | 428 | 92 | 422 | 1.06e-14 | 76.6 |
| Msa0049660 | AT1G79820.3 | 28.740 | 254 | 142 | 9 | 70 | 311 | 95 | 321 | 1.21e-14 | 76.6 |
| Msa0049660 | AT1G79820.2 | 28.780 | 205 | 121 | 6 | 70 | 264 | 95 | 284 | 5.12e-14 | 74.7 |
| Msa0049660 | AT1G79820.1 | 28.780 | 205 | 121 | 6 | 70 | 264 | 95 | 284 | 5.12e-14 | 74.7 |
| Msa0049660 | AT1G79820.4 | 28.780 | 205 | 121 | 6 | 70 | 264 | 95 | 284 | 5.48e-14 | 74.3 |
| Msa0049660 | AT2G20780.1 | 24.318 | 440 | 252 | 18 | 82 | 490 | 106 | 495 | 8.22e-14 | 74.3 |
| Msa0049660 | AT2G20780.2 | 24.318 | 440 | 252 | 18 | 82 | 490 | 48 | 437 | 9.63e-14 | 73.9 |
| Msa0049660 | AT1G79360.1 | 25.053 | 475 | 266 | 19 | 58 | 499 | 98 | 515 | 1.33e-13 | 73.6 |
| Msa0049660 | AT1G79410.1 | 24.086 | 465 | 279 | 18 | 54 | 500 | 99 | 507 | 1.79e-13 | 73.2 |
| Msa0049660 | AT1G76430.1 | 19.963 | 536 | 326 | 15 | 30 | 498 | 18 | 517 | 4.41e-13 | 72.0 |
| Msa0049660 | AT1G16390.1 | 25.821 | 457 | 260 | 18 | 58 | 493 | 106 | 504 | 4.62e-12 | 68.6 |
| Msa0049660 | AT5G43360.1 | 21.639 | 476 | 271 | 19 | 30 | 444 | 20 | 454 | 5.44e-12 | 68.6 |
| Msa0049660 | AT5G16150.2 | 26.994 | 163 | 115 | 3 | 70 | 229 | 146 | 307 | 3.31e-11 | 66.2 |
| Msa0049660 | AT5G16150.1 | 26.994 | 163 | 115 | 3 | 70 | 229 | 146 | 307 | 3.31e-11 | 66.2 |
| Msa0049660 | AT5G16150.3 | 26.994 | 163 | 115 | 3 | 70 | 229 | 146 | 307 | 3.31e-11 | 66.2 |
| Msa0049660 | AT2G18480.1 | 23.846 | 390 | 232 | 14 | 82 | 440 | 73 | 428 | 3.94e-11 | 65.9 |
Find 143 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGATTCATTCAACTTTC+TGG | 0.126827 | 1_2:-3071734 | Msa0049660:five_prime_UTR |
| AAGGGTTGACCTTGATAATT+TGG | 0.146854 | 1_2:+3069026 | None:intergenic |
| CAAGGTCAACCCTTCTATTA+TGG | 0.150801 | 1_2:-3069017 | Msa0049660:CDS |
| GTAATTGTAGCTCTTGTTTC+AGG | 0.165395 | 1_2:-3067707 | Msa0049660:CDS |
| TTCTCTGTCTGCAATTTATC+TGG | 0.184428 | 1_2:+3068913 | None:intergenic |
| AAATGAACATGGTTAATTTA+AGG | 0.189180 | 1_2:-3067351 | Msa0049660:three_prime_UTR |
| AAAGGAATGATTTCTAATTT+AGG | 0.203260 | 1_2:-3069081 | Msa0049660:CDS |
| ACAAGCAAGGAGACATAATT+TGG | 0.223234 | 1_2:+3071134 | None:intergenic |
| CGAAGTTACCTTTGATGATT+TGG | 0.234261 | 1_2:+3067317 | None:intergenic |
| ACACAGTATCTTGCAGTTCT+TGG | 0.248615 | 1_2:+3067648 | None:intergenic |
| CCATTCAAGTATATGGAATA+TGG | 0.273352 | 1_2:+3071623 | None:intergenic |
| GTACGTACCATTCAAGTATA+TGG | 0.276122 | 1_2:+3071616 | None:intergenic |
| GATGAAGCTCTTATAACATT+AGG | 0.282008 | 1_2:-3071434 | Msa0049660:CDS |
| TCCCTTGTTGGTCTTGGTTT+GGG | 0.287217 | 1_2:-3071104 | Msa0049660:CDS |
| TTCCCTTGTTGGTCTTGGTT+TGG | 0.301151 | 1_2:-3071105 | Msa0049660:CDS |
| GCTCTTATAACATTAGGTTT+TGG | 0.301990 | 1_2:-3071428 | Msa0049660:CDS |
| CAATTTGATTGTCAGAAATA+AGG | 0.308448 | 1_2:+3069178 | None:intergenic |
| AACTGAAGCAACTAACGTTT+TGG | 0.312177 | 1_2:-3069244 | Msa0049660:CDS |
| AGGCCCGTTGTTAGGTCTTC+AGG | 0.323940 | 1_2:+3068646 | None:intergenic |
| TTTCGTTCCCTTGTTGGTCT+TGG | 0.331910 | 1_2:-3071110 | Msa0049660:CDS |
| GAGACAATAGCAAGACTAAA+TGG | 0.335400 | 1_2:-3069222 | Msa0049660:CDS |
| AAATTAGAAATCATTCCTTT+AGG | 0.339113 | 1_2:+3069084 | None:intergenic |
| CAAATAAAAGGCCCGTTGTT+AGG | 0.349459 | 1_2:+3068638 | None:intergenic |
| CCTTTCAAGCATAGGTATCT+TGG | 0.351124 | 1_2:+3069273 | None:intergenic |
| TCAGGCAGATAGAATGTTAA+TGG | 0.357682 | 1_2:+3068664 | None:intergenic |
| TTCATTGATTCATTCCAGTT+TGG | 0.358871 | 1_2:+3071789 | None:intergenic |
| ATATGCGAGCTCCAAATAAA+AGG | 0.364937 | 1_2:+3068626 | None:intergenic |
| AAAACACTGCCCATAATAGA+AGG | 0.371337 | 1_2:+3069007 | None:intergenic |
| ACCATCCAGGTACCTCTATT+AGG | 0.375794 | 1_2:+3071035 | None:intergenic |
| CACCTTTGTAACTTACATCC+TGG | 0.379885 | 1_2:+3068887 | None:intergenic |
| AATGTGTGCGAACGAATAAT+TGG | 0.388296 | 1_2:+3067439 | None:intergenic |
| CAAGCAAGGAGACATAATTT+GGG | 0.393596 | 1_2:+3071135 | None:intergenic |
| TGTGCACTAGTAATTTGTTC+TGG | 0.396713 | 1_2:+3067548 | None:intergenic |
| AAGGTCAACCCTTCTATTAT+GGG | 0.403508 | 1_2:-3069016 | Msa0049660:CDS |
| ATGATGTTACTCTCATTTGT+AGG | 0.412623 | 1_2:-3071344 | Msa0049660:CDS |
| TTCTTTCCGTTTGAGACCAT+GGG | 0.417476 | 1_2:-3067671 | Msa0049660:CDS |
| AGGGTTGACCTTGATAATTT+GGG | 0.419441 | 1_2:+3069027 | None:intergenic |
| GCAGATTGTGATGCCAAGAC+TGG | 0.425745 | 1_2:-3069373 | Msa0049660:intron |
| CACAGTTCTTGAGGAAGAAA+AGG | 0.428597 | 1_2:-3067529 | Msa0049660:three_prime_UTR |
| TCGTTTACGCCGGCATTGGT+TGG | 0.434274 | 1_2:-3071385 | Msa0049660:CDS |
| GCAAGCTCAGTGGGTAGAAT+TGG | 0.439186 | 1_2:-3067803 | Msa0049660:CDS |
| TGTTAATTGGTGCTTACTCA+TGG | 0.439266 | 1_2:-3071247 | Msa0049660:CDS |
| GTTGGTCTTGGTTTGGGAGG+CGG | 0.439641 | 1_2:-3071098 | Msa0049660:CDS |
| TCGTCGTCAACTTACCAAAC+TGG | 0.447014 | 1_2:-3071803 | None:intergenic |
| GTTCTTTCCGTTTGAGACCA+TGG | 0.452361 | 1_2:-3067672 | Msa0049660:CDS |
| TTCCATGCAGATTGAACTGC+AGG | 0.455398 | 1_2:+3071320 | None:intergenic |
| CATAGGTATCTTGGTGACTC+TGG | 0.463933 | 1_2:+3069282 | None:intergenic |
| GATCAACATGGAAGGAGAAA+AGG | 0.467204 | 1_2:-3071212 | Msa0049660:CDS |
| CAGGCAGATAGAATGTTAAT+GGG | 0.472478 | 1_2:+3068665 | None:intergenic |
| ACCTTTGTAACTTACATCCT+GGG | 0.474759 | 1_2:+3068888 | None:intergenic |
| ACCTTGATAATTTGGGTGAA+AGG | 0.476208 | 1_2:+3069034 | None:intergenic |
| GTAAGCACCAATTAACATTC+CGG | 0.476951 | 1_2:+3071253 | None:intergenic |
| AAGAAGGAAAGATGTGGGAA+GGG | 0.478654 | 1_2:+3069323 | None:intergenic |
| AATACATTATTATAGATGAC+AGG | 0.482451 | 1_2:-3071500 | Msa0049660:intron |
| ATCTTGCAGTTCTTGGCCCA+TGG | 0.491779 | 1_2:+3067655 | None:intergenic |
| GTTAATTGGTGCTTACTCAT+GGG | 0.492775 | 1_2:-3071246 | Msa0049660:CDS |
| GTTCTCGTTTACGCCGGCAT+TGG | 0.492913 | 1_2:-3071389 | Msa0049660:CDS |
| AAAAGGAGAGGGAAGAAGTT+CGG | 0.496639 | 1_2:-3067512 | Msa0049660:three_prime_UTR |
| TTGTTCTACCTTTCAAGCAT+AGG | 0.498229 | 1_2:+3069265 | None:intergenic |
| TTCTGAAATCCAACCAATGC+CGG | 0.499012 | 1_2:+3071376 | None:intergenic |
| TCCTTTCACCCAAATTATCA+AGG | 0.499337 | 1_2:-3069035 | Msa0049660:CDS |
| TCTCTGTCTGCAATTTATCT+GGG | 0.508969 | 1_2:+3068914 | None:intergenic |
| CTGCCTGAAGACCTAACAAC+GGG | 0.512273 | 1_2:-3068649 | Msa0049660:CDS |
| CCAAGATACCTATGCTTGAA+AGG | 0.516263 | 1_2:-3069273 | Msa0049660:CDS |
| CCATATTCCATATACTTGAA+TGG | 0.516463 | 1_2:-3071623 | Msa0049660:intron |
| TGGTTGGATTTCAGAAGCAA+TGG | 0.517985 | 1_2:-3071369 | Msa0049660:CDS |
| AGCTCAGTGGGTAGAATTGG+TGG | 0.521900 | 1_2:-3067800 | Msa0049660:CDS |
| AGCCATCTCCAACCCAGTCT+TGG | 0.527031 | 1_2:+3069360 | None:intergenic |
| TTTGTTCCCGCTCCTAATAG+AGG | 0.528407 | 1_2:-3071047 | Msa0049660:CDS |
| TGAACATGGTTAATTTAAGG+AGG | 0.535787 | 1_2:-3067348 | Msa0049660:three_prime_UTR |
| GCTACTGTTACTGCTACTGC+CGG | 0.538066 | 1_2:-3071176 | Msa0049660:CDS |
| GAAGAAGGAAAGATGTGGGA+AGG | 0.538946 | 1_2:+3069322 | None:intergenic |
| TCTTGGCCCATGGTCTCAAA+CGG | 0.539054 | 1_2:+3067665 | None:intergenic |
| TTACTAGTGCACAGTTCTTG+AGG | 0.540007 | 1_2:-3067538 | Msa0049660:three_prime_UTR |
| TATGAAACTTTCTTGATGAG+AGG | 0.540801 | 1_2:+3071292 | None:intergenic |
| CCGCTCCTAATAGAGGTACC+TGG | 0.542053 | 1_2:-3071040 | Msa0049660:CDS |
| GTCGGAGTCGCAAGCTCAGT+GGG | 0.542417 | 1_2:-3067812 | Msa0049660:CDS |
| AGTAAAACCGTGTCTTCTGA+AGG | 0.542673 | 1_2:+3069135 | None:intergenic |
| CTTGTTGGTCTTGGTTTGGG+AGG | 0.545241 | 1_2:-3071101 | Msa0049660:CDS |
| AACAGAAGAAGGAAAGATGT+GGG | 0.548715 | 1_2:+3069318 | None:intergenic |
| TGGTGGAATGTTATGTCCAT+TGG | 0.548940 | 1_2:-3067783 | Msa0049660:CDS |
| TTATGTCCATTGGTAGCAGT+GGG | 0.549840 | 1_2:-3067773 | Msa0049660:CDS |
| ACCGGAAAACACAACCATCC+AGG | 0.553864 | 1_2:+3071022 | None:intergenic |
| GATAGAATGTTAATGGGAGA+AGG | 0.555946 | 1_2:+3068671 | None:intergenic |
| AGTGAAGTTGAATCTCCTAA+AGG | 0.556412 | 1_2:-3069099 | Msa0049660:CDS |
| GGAATGATTTCTAATTTAGG+TGG | 0.556564 | 1_2:-3069078 | Msa0049660:CDS |
| ACCAAGTTTATCCACTGCTA+CGG | 0.557857 | 1_2:+3068738 | None:intergenic |
| TGAGCTTGCGACTCCGACAC+CGG | 0.560176 | 1_2:+3067817 | None:intergenic |
| CAGGTACCTCTATTAGGAGC+GGG | 0.563187 | 1_2:+3071041 | None:intergenic |
| GTTATGTCCATTGGTAGCAG+TGG | 0.563497 | 1_2:-3067774 | Msa0049660:CDS |
| CAATGAAAATAAAATGAACA+TGG | 0.569553 | 1_2:-3067362 | Msa0049660:three_prime_UTR |
| CTCCCAAACCAAGACCAACA+AGG | 0.572336 | 1_2:+3071102 | None:intergenic |
| AGAAACCACGAGGACAAGAC+AGG | 0.574791 | 1_2:+3071074 | None:intergenic |
| GCCGTAGCAGTGGATAAACT+TGG | 0.575560 | 1_2:-3068739 | Msa0049660:CDS |
| GAACATGGTTAATTTAAGGA+GGG | 0.576006 | 1_2:-3067347 | Msa0049660:three_prime_UTR |
| GAGCTACAATTACAAACAGA+AGG | 0.576404 | 1_2:+3067717 | None:intergenic |
| ATGACAGGGGAAGAAGTTGA+AGG | 0.577013 | 1_2:-3071485 | Msa0049660:CDS |
| CAGATTGTGATGCCAAGACT+GGG | 0.577346 | 1_2:-3069372 | Msa0049660:CDS |
| ACGGCTGACAAGAGGAGCCC+AGG | 0.577551 | 1_2:+3068757 | None:intergenic |
| AACTTTCTTGATGAGAGGAA+AGG | 0.579795 | 1_2:+3071297 | None:intergenic |
| AAACAGAAGAAGGAAAGATG+TGG | 0.582964 | 1_2:+3069317 | None:intergenic |
| AATCATCAAAGGTAACTTCG+AGG | 0.583187 | 1_2:-3067314 | Msa0049660:three_prime_UTR |
| TCCCAAACCAAGACCAACAA+GGG | 0.583537 | 1_2:+3071103 | None:intergenic |
| CCTCTTGTCAGCCGTAGCAG+TGG | 0.584748 | 1_2:-3068749 | Msa0049660:CDS |
| TGCCAAGACTGGGTTGGAGA+TGG | 0.585381 | 1_2:-3069362 | Msa0049660:CDS |
| TTAATTGGTGCTTACTCATG+GGG | 0.587279 | 1_2:-3071245 | Msa0049660:CDS |
| ACTAAACCCACTGCTACCAA+TGG | 0.588885 | 1_2:+3067767 | None:intergenic |
| TGTCGGAGTCGCAAGCTCAG+TGG | 0.589287 | 1_2:-3067813 | Msa0049660:CDS |
| GTCCTGCAGTTCAATCTGCA+TGG | 0.595195 | 1_2:-3071322 | Msa0049660:CDS |
| CCCACATCAGTCAGAACCAC+CGG | 0.596858 | 1_2:-3067836 | Msa0049660:CDS |
| TCCCAGGATGTAAGTTACAA+AGG | 0.600242 | 1_2:-3068889 | Msa0049660:CDS |
| ACCGGTGGTTCTGACTGATG+TGG | 0.601322 | 1_2:+3067835 | None:intergenic |
| GCGGTCCTGTCTTGTCCTCG+TGG | 0.604240 | 1_2:-3071079 | Msa0049660:CDS |
| TTGTTTCTGATCAACATGGA+AGG | 0.605867 | 1_2:-3071220 | Msa0049660:CDS |
| CCACTGCTACGGCTGACAAG+AGG | 0.607873 | 1_2:+3068749 | None:intergenic |
| TCCTAATAGAGGTACCTGGA+TGG | 0.607966 | 1_2:-3071036 | Msa0049660:CDS |
| ACTCAGAGGTCAGCAAAACA+AGG | 0.609849 | 1_2:+3068959 | None:intergenic |
| GCAAGTAGCCAAATCATCAA+AGG | 0.614035 | 1_2:-3067325 | Msa0049660:three_prime_UTR |
| TCTTGAGGAAGAAAAGGAGA+GGG | 0.618954 | 1_2:-3067523 | Msa0049660:three_prime_UTR |
| ATTGTCAGAAATAAGGACAC+CGG | 0.619613 | 1_2:+3069185 | None:intergenic |
| TTCTTGAGGAAGAAAAGGAG+AGG | 0.623780 | 1_2:-3067524 | Msa0049660:three_prime_UTR |
| TGACAACCCTTCAGAAGACA+CGG | 0.630940 | 1_2:-3069142 | Msa0049660:CDS |
| TCAGTCAGAACCACCGGTGT+CGG | 0.632605 | 1_2:-3067830 | Msa0049660:CDS |
| GGCATTGTTTCTGATCAACA+TGG | 0.634211 | 1_2:-3071224 | Msa0049660:CDS |
| ATTGCAGACAGAGAAGTCCC+AGG | 0.635734 | 1_2:-3068905 | Msa0049660:CDS |
| CCGGTGGTTCTGACTGATGT+GGG | 0.637225 | 1_2:+3067836 | None:intergenic |
| AAACACTGCCCATAATAGAA+GGG | 0.640033 | 1_2:+3069008 | None:intergenic |
| GTAAAACCGTGTCTTCTGAA+GGG | 0.641040 | 1_2:+3069136 | None:intergenic |
| TCAGAAATAAGGACACCGGA+AGG | 0.641575 | 1_2:+3069189 | None:intergenic |
| TTGTGATGCCAAGACTGGGT+TGG | 0.641893 | 1_2:-3069368 | Msa0049660:CDS |
| GTAGCAGTGGGTTTAGTACA+CGG | 0.644415 | 1_2:-3067761 | Msa0049660:CDS |
| CCAGGTACCTCTATTAGGAG+CGG | 0.650113 | 1_2:+3071040 | None:intergenic |
| ATACATTATTATAGATGACA+GGG | 0.653715 | 1_2:-3071499 | Msa0049660:intron |
| ATAAATATACACGATTGTGA+AGG | 0.658702 | 1_2:+3068591 | None:intergenic |
| ATACTCGTTCTCGTTTACGC+CGG | 0.663285 | 1_2:-3071395 | Msa0049660:CDS |
| GCTTGCGACTCCGACACCGG+TGG | 0.668961 | 1_2:+3067820 | None:intergenic |
| CGTGTATATTTATGCCCCAG+AGG | 0.676515 | 1_2:-3068581 | Msa0049660:intron |
| TCATCATGTCTACACATCGT+CGG | 0.680005 | 1_2:+3067610 | None:intergenic |
| TCTGCCTGAAGACCTAACAA+CGG | 0.688127 | 1_2:-3068650 | Msa0049660:CDS |
| AAGCAAGGAGACATAATTTG+GGG | 0.695881 | 1_2:+3071136 | None:intergenic |
| TACATTATTATAGATGACAG+GGG | 0.700651 | 1_2:-3071498 | Msa0049660:intron |
| GCATAAAGACATTACCTCTG+GGG | 0.717940 | 1_2:+3068567 | None:intergenic |
| AACAAATTCAAGAAACCACG+AGG | 0.737456 | 1_2:+3071064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATAATTGAAAAGA+TGG | - | chr1_2:3068240-3068259 | Msa0049660:intron | 10.0% |
| !! | TATAAGAAAAGATAGAAATA+TGG | - | chr1_2:3068382-3068401 | Msa0049660:intron | 15.0% |
| !!! | AAGTTCAAAATTTGAAATAA+AGG | + | chr1_2:3069239-3069258 | None:intergenic | 15.0% |
| !! | ATTAGAACTAAATTAAATCA+AGG | + | chr1_2:3069313-3069332 | None:intergenic | 15.0% |
| !! | TTTACAACTATTTAAATTGA+GGG | + | chr1_2:3069400-3069419 | None:intergenic | 15.0% |
| !! | TCAATTTAAATAGTTGTAAA+CGG | - | chr1_2:3069400-3069419 | Msa0049660:intron | 15.0% |
| !!! | TTAATTAATTTTGAATGATC+TGG | - | chr1_2:3070575-3070594 | Msa0049660:intron | 15.0% |
| !!! | TAATTTGCTTTATTTTTTCT+AGG | + | chr1_2:3070981-3071000 | None:intergenic | 15.0% |
| !! | AGAAAAAATAAAGCAAATTA+TGG | - | chr1_2:3070981-3071000 | Msa0049660:CDS | 15.0% |
| !!! | TTTTTTTTAGTAAATTGTAG+AGG | - | chr1_2:3071716-3071735 | Msa0049660:five_prime_UTR | 15.0% |
| !!! | TTTTTTTAGTAAATTGTAGA+GGG | - | chr1_2:3071717-3071736 | Msa0049660:five_prime_UTR | 15.0% |
| !! | AATACATTATTATAGATGAC+AGG | - | chr1_2:3067611-3067630 | Msa0049660:exon | 20.0% |
| !! | ATACATTATTATAGATGACA+GGG | - | chr1_2:3067612-3067631 | Msa0049660:exon | 20.0% |
| !! | ATATATAATTGAAAAGATGG+TGG | - | chr1_2:3068243-3068262 | Msa0049660:intron | 20.0% |
| !!! | TCTTTTCTTATACTTTTTCT+TGG | + | chr1_2:3068374-3068393 | None:intergenic | 20.0% |
| !!! | AATGTGTTTTACTTAACAAA+GGG | - | chr1_2:3068764-3068783 | Msa0049660:CDS | 20.0% |
| !! | AAATTAAATCAAGGAGATTT+GGG | + | chr1_2:3069304-3069323 | None:intergenic | 20.0% |
| !! | TAAATTAAATCAAGGAGATT+TGG | + | chr1_2:3069305-3069324 | None:intergenic | 20.0% |
| !! | GTTTACAACTATTTAAATTG+AGG | + | chr1_2:3069401-3069420 | None:intergenic | 20.0% |
| !!! | TATACATTACTTAAGTCTTT+TGG | + | chr1_2:3069487-3069506 | None:intergenic | 20.0% |
| !! | AAATTAGAAATCATTCCTTT+AGG | + | chr1_2:3070030-3070049 | None:intergenic | 20.0% |
| !! | AAAGGAATGATTTCTAATTT+AGG | - | chr1_2:3070030-3070049 | Msa0049660:intron | 20.0% |
| !!! | TCATATTTTAGTAGTCTTAT+TGG | + | chr1_2:3070723-3070742 | None:intergenic | 20.0% |
| !! | AGAAGAATGTTATTATCTTA+AGG | - | chr1_2:3070759-3070778 | Msa0049660:intron | 20.0% |
| !! | GAAGAATGTTATTATCTTAA+GGG | - | chr1_2:3070760-3070779 | Msa0049660:intron | 20.0% |
| !! | AAGAATGTTATTATCTTAAG+GGG | - | chr1_2:3070761-3070780 | Msa0049660:intron | 20.0% |
| !!! | TTTCTTAACCAATTCTTTTA+CGG | - | chr1_2:3070889-3070908 | Msa0049660:intron | 20.0% |
| !! | GTCTAATTCTTCTTTATAAA+TGG | - | chr1_2:3071209-3071228 | Msa0049660:CDS | 20.0% |
| !! | TAATTCTTCTTTATAAATGG+TGG | - | chr1_2:3071212-3071231 | Msa0049660:CDS | 20.0% |
| !!! | TTTTTTAGTAAATTGTAGAG+GGG | - | chr1_2:3071718-3071737 | Msa0049660:five_prime_UTR | 20.0% |
| !! | CAATGAAAATAAAATGAACA+TGG | - | chr1_2:3071749-3071768 | Msa0049660:five_prime_UTR | 20.0% |
| !! | AAATGAACATGGTTAATTTA+AGG | - | chr1_2:3071760-3071779 | Msa0049660:five_prime_UTR | 20.0% |
| ! | TTTAGATTCATTCAACTTTC+TGG | - | chr1_2:3067377-3067396 | Msa0049660:three_prime_UTR | 25.0% |
| ! | TACATTATTATAGATGACAG+GGG | - | chr1_2:3067613-3067632 | Msa0049660:exon | 25.0% |
| !! | AGAAACAGAAAAAGTATGTA+AGG | - | chr1_2:3068707-3068726 | Msa0049660:CDS | 25.0% |
| ! | AAGTATGTAAGGAAAGAATA+CGG | - | chr1_2:3068718-3068737 | Msa0049660:CDS | 25.0% |
| !! | CAATGTGTTTTACTTAACAA+AGG | - | chr1_2:3068763-3068782 | Msa0049660:CDS | 25.0% |
| !! | ATGTGTTTTACTTAACAAAG+GGG | - | chr1_2:3068765-3068784 | Msa0049660:CDS | 25.0% |
| ! | AAATAAAGGCTTAAGCAAAT+TGG | + | chr1_2:3069225-3069244 | None:intergenic | 25.0% |
| !! | TTCAAATTTTGAACTTACCT+AGG | - | chr1_2:3069243-3069262 | Msa0049660:CDS | 25.0% |
| ! | TAAAATTCTTTCTTGCATGA+AGG | + | chr1_2:3069370-3069389 | None:intergenic | 25.0% |
| !! | TCATTTTGTAAAACAGAAGA+AGG | + | chr1_2:3069807-3069826 | None:intergenic | 25.0% |
| ! | CAATTTGATTGTCAGAAATA+AGG | + | chr1_2:3069936-3069955 | None:intergenic | 25.0% |
| !!! | ATTCAACTTCACTTTTTCTT+GGG | + | chr1_2:3070005-3070024 | None:intergenic | 25.0% |
| !!! | GGTAATGCTTTTTCATATTA+TGG | - | chr1_2:3070129-3070148 | Msa0049660:intron | 25.0% |
| ! | ATAAATATACACGATTGTGA+AGG | + | chr1_2:3070523-3070542 | None:intergenic | 25.0% |
| ! | ATTCAACAACAGTATAGAAT+AGG | + | chr1_2:3070657-3070676 | None:intergenic | 25.0% |
| ! | AAGTACTATTGTATAGCAAT+TGG | - | chr1_2:3070685-3070704 | Msa0049660:intron | 25.0% |
| !!! | TTTTAGTAGTCTTATTGGAT+TGG | + | chr1_2:3070718-3070737 | None:intergenic | 25.0% |
| ! | ACAGCATTATTAACTTCAAA+TGG | - | chr1_2:3070835-3070854 | Msa0049660:intron | 25.0% |
| ! | AACAAATTCCGTAAAAGAAT+TGG | + | chr1_2:3070900-3070919 | None:intergenic | 25.0% |
| !!! | TGTTTTGACAATTCTTAAAG+AGG | + | chr1_2:3071017-3071036 | None:intergenic | 25.0% |
| ! | AATTCAAAAACAATGAGGTA+GGG | + | chr1_2:3071070-3071089 | None:intergenic | 25.0% |
| ! | TAATTCAAAAACAATGAGGT+AGG | + | chr1_2:3071071-3071090 | None:intergenic | 25.0% |
| ! | CAGTTAATTCAAAAACAATG+AGG | + | chr1_2:3071075-3071094 | None:intergenic | 25.0% |
| ! | TAAGTTACCACAAAGAAAAA+AGG | - | chr1_2:3071105-3071124 | Msa0049660:CDS | 25.0% |
| ! | AATAGTTCCTATCTAATAAC+TGG | + | chr1_2:3071136-3071155 | None:intergenic | 25.0% |
| !! | ACACATTCTTTTTATGTGTT+TGG | - | chr1_2:3071688-3071707 | Msa0049660:five_prime_UTR | 25.0% |
| !! | TTCATTGATTCATTCCAGTT+TGG | + | chr1_2:3067325-3067344 | None:intergenic | 30.0% |
| CCATTCAAGTATATGGAATA+TGG | + | chr1_2:3067491-3067510 | None:intergenic | 30.0% | |
| CCATATTCCATATACTTGAA+TGG | - | chr1_2:3067488-3067507 | Msa0049660:three_prime_UTR | 30.0% | |
| GATGAAGCTCTTATAACATT+AGG | - | chr1_2:3067677-3067696 | Msa0049660:CDS | 30.0% | |
| ! | GCTCTTATAACATTAGGTTT+TGG | - | chr1_2:3067683-3067702 | Msa0049660:CDS | 30.0% |
| ATGATGTTACTCTCATTTGT+AGG | - | chr1_2:3067767-3067786 | Msa0049660:CDS | 30.0% | |
| TATGAAACTTTCTTGATGAG+AGG | + | chr1_2:3067822-3067841 | None:intergenic | 30.0% | |
| !!! | ATAACAAGTGTTGTTTTTGC+CGG | - | chr1_2:3067839-3067858 | Msa0049660:CDS | 30.0% |
| !! | TTGAAAAGATGGTGGAAATT+AGG | - | chr1_2:3068251-3068270 | Msa0049660:intron | 30.0% |
| !! | TGAAAAGATGGTGGAAATTA+GGG | - | chr1_2:3068252-3068271 | Msa0049660:intron | 30.0% |
| AAATTAGGGTTAAGTGGTTT+GGG | - | chr1_2:3068266-3068285 | Msa0049660:intron | 30.0% | |
| AGTCAAATCACTATTTACAG+AGG | - | chr1_2:3068344-3068363 | Msa0049660:intron | 30.0% | |
| ! | GTCTCATTTTGTTACATTTG+CGG | + | chr1_2:3068630-3068649 | None:intergenic | 30.0% |
| GTAACAAAATGAGACATAAG+AGG | - | chr1_2:3068635-3068654 | Msa0049660:CDS | 30.0% | |
| AGTTGGTTAGTATTTAGATG+AGG | - | chr1_2:3068658-3068677 | Msa0049660:CDS | 30.0% | |
| AATATAGTGAGTAGTGAGAT+AGG | - | chr1_2:3068683-3068702 | Msa0049660:CDS | 30.0% | |
| ! | TTGATATTAAGGCTTTGTCT+GGG | - | chr1_2:3068836-3068855 | Msa0049660:intron | 30.0% |
| !! | GGAGGTTTTTCTTTTTTCAT+TGG | - | chr1_2:3068904-3068923 | Msa0049660:CDS | 30.0% |
| !!! | CTTACTTTGAAGAGTACTTT+TGG | + | chr1_2:3069068-3069087 | None:intergenic | 30.0% |
| !! | CAAAAGTACTCTTCAAAGTA+AGG | - | chr1_2:3069066-3069085 | Msa0049660:CDS | 30.0% |
| GGCTAAATGATGAAAGTAAA+TGG | + | chr1_2:3069565-3069584 | None:intergenic | 30.0% | |
| TTACTTTCATCATTTAGCCT+AGG | - | chr1_2:3069566-3069585 | Msa0049660:intron | 30.0% | |
| ! | TTATGGCTTTACTTGTCTTA+AGG | - | chr1_2:3069595-3069614 | Msa0049660:intron | 30.0% |
| TGACAAATCATAGAGATGAT+GGG | - | chr1_2:3069693-3069712 | Msa0049660:intron | 30.0% | |
| !!! | TTCAACTTCACTTTTTCTTG+GGG | + | chr1_2:3070004-3070023 | None:intergenic | 30.0% |
| !!! | GATTCAACTTCACTTTTTCT+TGG | + | chr1_2:3070006-3070025 | None:intergenic | 30.0% |
| GGAATGATTTCTAATTTAGG+TGG | - | chr1_2:3070033-3070052 | Msa0049660:intron | 30.0% | |
| !! | ACTATTTCTTTTCAACTCAG+AGG | + | chr1_2:3070169-3070188 | None:intergenic | 30.0% |
| !!! | GTTTTTATTGCTAGTTTTGC+AGG | - | chr1_2:3070246-3070265 | Msa0049660:intron | 30.0% |
| !! | TTGTTTTACTATACCATTCC+CGG | - | chr1_2:3070292-3070311 | Msa0049660:intron | 30.0% |
| AAACAAATGCAAACTATACC+TGG | - | chr1_2:3071032-3071051 | Msa0049660:CDS | 30.0% | |
| !! | TGATGACGTTTTATATACCT+CGG | - | chr1_2:3071518-3071537 | Msa0049660:intron | 30.0% |
| !! | TTTTCATGATTTAAAGTCCG+AGG | + | chr1_2:3071538-3071557 | None:intergenic | 30.0% |
| TGAACATGGTTAATTTAAGG+AGG | - | chr1_2:3071763-3071782 | Msa0049660:five_prime_UTR | 30.0% | |
| GAACATGGTTAATTTAAGGA+GGG | - | chr1_2:3071764-3071783 | Msa0049660:five_prime_UTR | 30.0% | |
| GTACGTACCATTCAAGTATA+TGG | + | chr1_2:3067498-3067517 | None:intergenic | 35.0% | |
| ATCTCAAATCGAATCGAAGA+TGG | + | chr1_2:3067576-3067595 | None:intergenic | 35.0% | |
| AACTTTCTTGATGAGAGGAA+AGG | + | chr1_2:3067817-3067836 | None:intergenic | 35.0% | |
| ! | GTTTTTGCCGGAATGTTAAT+TGG | - | chr1_2:3067851-3067870 | Msa0049660:intron | 35.0% |
| GTAAGCACCAATTAACATTC+CGG | + | chr1_2:3067861-3067880 | None:intergenic | 35.0% | |
| ! | TGTTAATTGGTGCTTACTCA+TGG | - | chr1_2:3067864-3067883 | Msa0049660:intron | 35.0% |
| ! | GTTAATTGGTGCTTACTCAT+GGG | - | chr1_2:3067865-3067884 | Msa0049660:intron | 35.0% |
| ! | TTAATTGGTGCTTACTCATG+GGG | - | chr1_2:3067866-3067885 | Msa0049660:intron | 35.0% |
| !! | TTGTTTCTGATCAACATGGA+AGG | - | chr1_2:3067891-3067910 | Msa0049660:intron | 35.0% |
| GGACAGAGAACTAAAAAAAC+CGG | + | chr1_2:3067957-3067976 | None:intergenic | 35.0% | |
| AAGCAAGGAGACATAATTTG+GGG | + | chr1_2:3067978-3067997 | None:intergenic | 35.0% | |
| CAAGCAAGGAGACATAATTT+GGG | + | chr1_2:3067979-3067998 | None:intergenic | 35.0% | |
| ACAAGCAAGGAGACATAATT+TGG | + | chr1_2:3067980-3067999 | None:intergenic | 35.0% | |
| AACAAATTCAAGAAACCACG+AGG | + | chr1_2:3068050-3068069 | None:intergenic | 35.0% | |
| !!! | TTTTTGAAGCATCACTTGCT+TGG | - | chr1_2:3068131-3068150 | Msa0049660:intron | 35.0% |
| !!! | TTTTGAAGCATCACTTGCTT+GGG | - | chr1_2:3068132-3068151 | Msa0049660:intron | 35.0% |
| GAAATTAGGGTTAAGTGGTT+TGG | - | chr1_2:3068265-3068284 | Msa0049660:intron | 35.0% | |
| ATCGTGTATCATTGTAACAG+AGG | + | chr1_2:3068533-3068552 | None:intergenic | 35.0% | |
| !! | TACTTAAGAGTGTCTACACT+AGG | - | chr1_2:3068579-3068598 | Msa0049660:intron | 35.0% |
| ! | TCATTTTGTTACATTTGCGG+AGG | + | chr1_2:3068627-3068646 | None:intergenic | 35.0% |
| AAATGAGACATAAGAGGAGT+TGG | - | chr1_2:3068641-3068660 | Msa0049660:CDS | 35.0% | |
| AATACGGATCTCTTGAATCA+AGG | - | chr1_2:3068734-3068753 | Msa0049660:CDS | 35.0% | |
| !! | CTTCCTTTGGTGTTCTAAAA+TGG | + | chr1_2:3068799-3068818 | None:intergenic | 35.0% |
| !!! | CATTTTAGAACACCAAAGGA+AGG | - | chr1_2:3068797-3068816 | Msa0049660:intron | 35.0% |
| GCAATATCGCCTTGATATTA+AGG | - | chr1_2:3068825-3068844 | Msa0049660:intron | 35.0% | |
| CAGACAAAGCCTTAATATCA+AGG | + | chr1_2:3068837-3068856 | None:intergenic | 35.0% | |
| ! | CTTGATATTAAGGCTTTGTC+TGG | - | chr1_2:3068835-3068854 | Msa0049660:intron | 35.0% |
| ACCAAAACCCTTCAATATGT+AGG | - | chr1_2:3068927-3068946 | Msa0049660:CDS | 35.0% | |
| ! | TCCTACATATTGAAGGGTTT+TGG | + | chr1_2:3068931-3068950 | None:intergenic | 35.0% |
| CACGTTTCCTACATATTGAA+GGG | + | chr1_2:3068937-3068956 | None:intergenic | 35.0% | |
| ACACGTTTCCTACATATTGA+AGG | + | chr1_2:3068938-3068957 | None:intergenic | 35.0% | |
| ATATGTAGGAAACGTGTTGA+AGG | - | chr1_2:3068941-3068960 | Msa0049660:CDS | 35.0% | |
| !!! | TTTGAAGAGTACTTTTGGAG+AGG | + | chr1_2:3069063-3069082 | None:intergenic | 35.0% |
| ! | CTACTAGTTTAACTGCAAAC+TGG | + | chr1_2:3069156-3069175 | None:intergenic | 35.0% |
| TTGAACTTACCTAGGATTCA+AGG | - | chr1_2:3069251-3069270 | Msa0049660:CDS | 35.0% | |
| TTCTTGCATGAAGGAATGAT+AGG | + | chr1_2:3069361-3069380 | None:intergenic | 35.0% | |
| ! | GTTAATTGTTGGCTACACAT+AGG | + | chr1_2:3069462-3069481 | None:intergenic | 35.0% |
| ! | GTCTTTTGGCAGTTAATTGT+TGG | + | chr1_2:3069473-3069492 | None:intergenic | 35.0% |
| TTTAGCCTAGGAAACTGTTA+TGG | - | chr1_2:3069578-3069597 | Msa0049660:intron | 35.0% | |
| TAAAGCCATAACAGTTTCCT+AGG | + | chr1_2:3069586-3069605 | None:intergenic | 35.0% | |
| ! | CATCATCTCTATGATTTGTC+AGG | + | chr1_2:3069694-3069713 | None:intergenic | 35.0% |
| CTGACAAATCATAGAGATGA+TGG | - | chr1_2:3069692-3069711 | Msa0049660:intron | 35.0% | |
| AACAGAAGAAGGAAAGATGT+GGG | + | chr1_2:3069796-3069815 | None:intergenic | 35.0% | |
| AAACAGAAGAAGGAAAGATG+TGG | + | chr1_2:3069797-3069816 | None:intergenic | 35.0% | |
| TTGTTCTACCTTTCAAGCAT+AGG | + | chr1_2:3069849-3069868 | None:intergenic | 35.0% | |
| ! | AACTGAAGCAACTAACGTTT+TGG | - | chr1_2:3069867-3069886 | Msa0049660:intron | 35.0% |
| GAGACAATAGCAAGACTAAA+TGG | - | chr1_2:3069889-3069908 | Msa0049660:intron | 35.0% | |
| AATGGCAAAAAACTTCCTTC+CGG | - | chr1_2:3069907-3069926 | Msa0049660:intron | 35.0% | |
| ATTGTCAGAAATAAGGACAC+CGG | + | chr1_2:3069929-3069948 | None:intergenic | 35.0% | |
| AGTGAAGTTGAATCTCCTAA+AGG | - | chr1_2:3070012-3070031 | Msa0049660:intron | 35.0% | |
| TCCTTTCACCCAAATTATCA+AGG | - | chr1_2:3070076-3070095 | Msa0049660:intron | 35.0% | |
| ! | ACCTTGATAATTTGGGTGAA+AGG | + | chr1_2:3070080-3070099 | None:intergenic | 35.0% |
| ! | AGGGTTGACCTTGATAATTT+GGG | + | chr1_2:3070087-3070106 | None:intergenic | 35.0% |
| ! | AAGGGTTGACCTTGATAATT+TGG | + | chr1_2:3070088-3070107 | None:intergenic | 35.0% |
| AAGGTCAACCCTTCTATTAT+GGG | - | chr1_2:3070095-3070114 | Msa0049660:intron | 35.0% | |
| AAACACTGCCCATAATAGAA+GGG | + | chr1_2:3070106-3070125 | None:intergenic | 35.0% | |
| AAAACACTGCCCATAATAGA+AGG | + | chr1_2:3070107-3070126 | None:intergenic | 35.0% | |
| ! | CTATTATGGGCAGTGTTTTT+CGG | - | chr1_2:3070108-3070127 | Msa0049660:intron | 35.0% |
| TCTCTGTCTGCAATTTATCT+GGG | + | chr1_2:3070200-3070219 | None:intergenic | 35.0% | |
| TTCTCTGTCTGCAATTTATC+TGG | + | chr1_2:3070201-3070220 | None:intergenic | 35.0% | |
| ACCTTTGTAACTTACATCCT+GGG | + | chr1_2:3070226-3070245 | None:intergenic | 35.0% | |
| ! | TGTTTTACTATACCATTCCC+GGG | - | chr1_2:3070293-3070312 | Msa0049660:intron | 35.0% |
| GATAGAATGTTAATGGGAGA+AGG | + | chr1_2:3070443-3070462 | None:intergenic | 35.0% | |
| CAGGCAGATAGAATGTTAAT+GGG | + | chr1_2:3070449-3070468 | None:intergenic | 35.0% | |
| TCAGGCAGATAGAATGTTAA+TGG | + | chr1_2:3070450-3070469 | None:intergenic | 35.0% | |
| ATATGCGAGCTCCAAATAAA+AGG | + | chr1_2:3070488-3070507 | None:intergenic | 35.0% | |
| TGCATAAAGACATTACCTCT+GGG | + | chr1_2:3070548-3070567 | None:intergenic | 35.0% | |
| TTGCATAAAGACATTACCTC+TGG | + | chr1_2:3070549-3070568 | None:intergenic | 35.0% | |
| GAGAAATCTTGTGCATTCTT+CGG | - | chr1_2:3070616-3070635 | Msa0049660:intron | 35.0% | |
| CACAGAGAACTAACTTTGTA+AGG | + | chr1_2:3070939-3070958 | None:intergenic | 35.0% | |
| CTTTCGTCATGTATAAGACA+TGG | - | chr1_2:3071166-3071185 | Msa0049660:CDS | 35.0% | |
| ! | GGTTTCACAGCAATGTTTTT+CGG | - | chr1_2:3071187-3071206 | Msa0049660:CDS | 35.0% |
| GAGCTACAATTACAAACAGA+AGG | + | chr1_2:3071397-3071416 | None:intergenic | 35.0% | |
| ! | GTAATTGTAGCTCTTGTTTC+AGG | - | chr1_2:3071404-3071423 | Msa0049660:CDS | 35.0% |
| !! | TGTGCACTAGTAATTTGTTC+TGG | + | chr1_2:3071566-3071585 | None:intergenic | 35.0% |
| AATGTGTGCGAACGAATAAT+TGG | + | chr1_2:3071675-3071694 | None:intergenic | 35.0% | |
| ! | CGAAGTTACCTTTGATGATT+TGG | + | chr1_2:3071797-3071816 | None:intergenic | 35.0% |
| AATCATCAAAGGTAACTTCG+AGG | - | chr1_2:3071797-3071816 | Msa0049660:five_prime_UTR | 35.0% | |
| !! | TTCTGAAATCCAACCAATGC+CGG | + | chr1_2:3067738-3067757 | None:intergenic | 40.0% |
| TGGTTGGATTTCAGAAGCAA+TGG | - | chr1_2:3067742-3067761 | Msa0049660:CDS | 40.0% | |
| !! | GGCATTGTTTCTGATCAACA+TGG | - | chr1_2:3067887-3067906 | Msa0049660:intron | 40.0% |
| GATCAACATGGAAGGAGAAA+AGG | - | chr1_2:3067899-3067918 | Msa0049660:intron | 40.0% | |
| AAGGGAACGAAAAACAAGCA+AGG | + | chr1_2:3067993-3068012 | None:intergenic | 40.0% | |
| !! | CTTGTTTTTCGTTCCCTTGT+TGG | - | chr1_2:3067995-3068014 | Msa0049660:intron | 40.0% |
| ! | TGGTTGTGTTTTCCGGTTTT+TGG | - | chr1_2:3068095-3068114 | Msa0049660:intron | 40.0% |
| !! | TTTTCCGGTTTTTGGACTGT+TGG | - | chr1_2:3068103-3068122 | Msa0049660:intron | 40.0% |
| TGTACCAACAGTCCAAAAAC+CGG | + | chr1_2:3068110-3068129 | None:intergenic | 40.0% | |
| TGGTGGAAATTAGGGTTAAG+TGG | - | chr1_2:3068260-3068279 | Msa0049660:intron | 40.0% | |
| !! | TCAAGTTTTATCGCACCAAG+TGG | + | chr1_2:3068453-3068472 | None:intergenic | 40.0% |
| CATTGTAACAGAGGAAAGCT+AGG | + | chr1_2:3068524-3068543 | None:intergenic | 40.0% | |
| GTGTAGACACTCTTAAGTAC+TGG | + | chr1_2:3068578-3068597 | None:intergenic | 40.0% | |
| TCTACACTAGGAGAGAAAAG+AGG | - | chr1_2:3068591-3068610 | Msa0049660:CDS | 40.0% | |
| GGATCTCTTGAATCAAGGAA+AGG | - | chr1_2:3068739-3068758 | Msa0049660:CDS | 40.0% | |
| !!! | GTGCCATTTTAGAACACCAA+AGG | - | chr1_2:3068793-3068812 | Msa0049660:intron | 40.0% |
| ATATTGCACTCACCTTCCTT+TGG | + | chr1_2:3068812-3068831 | None:intergenic | 40.0% | |
| AAAAACCTCCACACAAGATG+GGG | + | chr1_2:3068894-3068913 | None:intergenic | 40.0% | |
| GAAAAACCTCCACACAAGAT+GGG | + | chr1_2:3068895-3068914 | None:intergenic | 40.0% | |
| AGAAAAACCTCCACACAAGA+TGG | + | chr1_2:3068896-3068915 | None:intergenic | 40.0% | |
| ! | GTGTTGAAGGAGGATTTTGA+GGG | - | chr1_2:3068954-3068973 | Msa0049660:CDS | 40.0% |
| !! | GCTTTGTTTGAGTGTTAGGA+GGG | + | chr1_2:3069113-3069132 | None:intergenic | 40.0% |
| !! | CTAGGCTTTGTTTGAGTGTT+AGG | + | chr1_2:3069117-3069136 | None:intergenic | 40.0% |
| GGCTGAGATTTGAATCATCT+AGG | + | chr1_2:3069135-3069154 | None:intergenic | 40.0% | |
| ACACTTAGACCTTGAATCCT+AGG | + | chr1_2:3069263-3069282 | None:intergenic | 40.0% | |
| AGGATTCAAGGTCTAAGTGT+AGG | - | chr1_2:3069263-3069282 | Msa0049660:CDS | 40.0% | |
| TGCATGAAGGAATGATAGGA+AGG | + | chr1_2:3069357-3069376 | None:intergenic | 40.0% | |
| ! | ATTGTTGGCTACACATAGGA+AGG | + | chr1_2:3069458-3069477 | None:intergenic | 40.0% |
| TCTGCAAGGAACATTGCATT+GGG | + | chr1_2:3069723-3069742 | None:intergenic | 40.0% | |
| ATCTGCAAGGAACATTGCAT+TGG | + | chr1_2:3069724-3069743 | None:intergenic | 40.0% | |
| AAGAAGGAAAGATGTGGGAA+GGG | + | chr1_2:3069791-3069810 | None:intergenic | 40.0% | |
| CCTTTCAAGCATAGGTATCT+TGG | + | chr1_2:3069841-3069860 | None:intergenic | 40.0% | |
| CCAAGATACCTATGCTTGAA+AGG | - | chr1_2:3069838-3069857 | Msa0049660:intron | 40.0% | |
| GTAAAACCGTGTCTTCTGAA+GGG | + | chr1_2:3069978-3069997 | None:intergenic | 40.0% | |
| AGTAAAACCGTGTCTTCTGA+AGG | + | chr1_2:3069979-3069998 | None:intergenic | 40.0% | |
| CAAGGTCAACCCTTCTATTA+TGG | - | chr1_2:3070094-3070113 | Msa0049660:intron | 40.0% | |
| TCCCAGGATGTAAGTTACAA+AGG | - | chr1_2:3070222-3070241 | Msa0049660:intron | 40.0% | |
| CACCTTTGTAACTTACATCC+TGG | + | chr1_2:3070227-3070246 | None:intergenic | 40.0% | |
| AATCATACATTTCCCGGGAA+TGG | + | chr1_2:3070308-3070327 | None:intergenic | 40.0% | |
| GCATCAATCATACATTTCCC+GGG | + | chr1_2:3070313-3070332 | None:intergenic | 40.0% | |
| GGCATCAATCATACATTTCC+CGG | + | chr1_2:3070314-3070333 | None:intergenic | 40.0% | |
| ! | GTAGCTCTGTGCACAAAATT+TGG | + | chr1_2:3070335-3070354 | None:intergenic | 40.0% |
| ACCAAGTTTATCCACTGCTA+CGG | + | chr1_2:3070376-3070395 | None:intergenic | 40.0% | |
| CAAATAAAAGGCCCGTTGTT+AGG | + | chr1_2:3070476-3070495 | None:intergenic | 40.0% | |
| ! | CTAACAACGGGCCTTTTATT+TGG | - | chr1_2:3070474-3070493 | Msa0049660:intron | 40.0% |
| GCATAAAGACATTACCTCTG+GGG | + | chr1_2:3070547-3070566 | None:intergenic | 40.0% | |
| ! | GTAGGGAGTAATTTAAAGCC+AGG | + | chr1_2:3071053-3071072 | None:intergenic | 40.0% |
| !!! | GGTGAGACCTTTTTTCTTTG+TGG | + | chr1_2:3071115-3071134 | None:intergenic | 40.0% |
| GGTCTCACCAGTTATTAGAT+AGG | - | chr1_2:3071126-3071145 | Msa0049660:CDS | 40.0% | |
| TGGTGGAATGTTATGTCCAT+TGG | - | chr1_2:3071328-3071347 | Msa0049660:CDS | 40.0% | |
| ! | TTATGTCCATTGGTAGCAGT+GGG | - | chr1_2:3071338-3071357 | Msa0049660:CDS | 40.0% |
| ! | TTCTTTCCGTTTGAGACCAT+GGG | - | chr1_2:3071440-3071459 | Msa0049660:CDS | 40.0% |
| ACACAGTATCTTGCAGTTCT+TGG | + | chr1_2:3071466-3071485 | None:intergenic | 40.0% | |
| TCATCATGTCTACACATCGT+CGG | + | chr1_2:3071504-3071523 | None:intergenic | 40.0% | |
| TTACTAGTGCACAGTTCTTG+AGG | - | chr1_2:3071573-3071592 | Msa0049660:intron | 40.0% | |
| CACAGTTCTTGAGGAAGAAA+AGG | - | chr1_2:3071582-3071601 | Msa0049660:intron | 40.0% | |
| TTCTTGAGGAAGAAAAGGAG+AGG | - | chr1_2:3071587-3071606 | Msa0049660:intron | 40.0% | |
| TCTTGAGGAAGAAAAGGAGA+GGG | - | chr1_2:3071588-3071607 | Msa0049660:intron | 40.0% | |
| AAAAGGAGAGGGAAGAAGTT+CGG | - | chr1_2:3071599-3071618 | Msa0049660:intron | 40.0% | |
| GCAAGTAGCCAAATCATCAA+AGG | - | chr1_2:3071786-3071805 | Msa0049660:five_prime_UTR | 40.0% | |
| ATGACAGGGGAAGAAGTTGA+AGG | - | chr1_2:3067626-3067645 | Msa0049660:CDS | 45.0% | |
| ATACTCGTTCTCGTTTACGC+CGG | - | chr1_2:3067716-3067735 | Msa0049660:CDS | 45.0% | |
| TTCCATGCAGATTGAACTGC+AGG | + | chr1_2:3067794-3067813 | None:intergenic | 45.0% | |
| ! | TTTCGTTCCCTTGTTGGTCT+TGG | - | chr1_2:3068001-3068020 | Msa0049660:intron | 45.0% |
| !! | TTCCCTTGTTGGTCTTGGTT+TGG | - | chr1_2:3068006-3068025 | Msa0049660:intron | 45.0% |
| !! | TCCCTTGTTGGTCTTGGTTT+GGG | - | chr1_2:3068007-3068026 | Msa0049660:intron | 45.0% |
| TCCCAAACCAAGACCAACAA+GGG | + | chr1_2:3068011-3068030 | None:intergenic | 45.0% | |
| TTTGTTCCCGCTCCTAATAG+AGG | - | chr1_2:3068064-3068083 | Msa0049660:intron | 45.0% | |
| !! | TCCTAATAGAGGTACCTGGA+TGG | - | chr1_2:3068075-3068094 | Msa0049660:intron | 45.0% |
| ACCATCCAGGTACCTCTATT+AGG | + | chr1_2:3068079-3068098 | None:intergenic | 45.0% | |
| ! | ACCTGGATGGTTGTGTTTTC+CGG | - | chr1_2:3068088-3068107 | Msa0049660:intron | 45.0% |
| ! | AGCAAAGAGAGCAGTTCTGA+TGG | - | chr1_2:3068316-3068335 | Msa0049660:intron | 45.0% |
| TTTATCGCACCAAGTGGAGT+CGG | + | chr1_2:3068447-3068466 | None:intergenic | 45.0% | |
| ! | TAAGGCTTTGTCTGGGTGTT+TGG | - | chr1_2:3068843-3068862 | Msa0049660:intron | 45.0% |
| CTTTGTCTGGGTGTTTGGAA+AGG | - | chr1_2:3068848-3068867 | Msa0049660:intron | 45.0% | |
| TCTGGGTGTTTGGAAAGGAA+GGG | - | chr1_2:3068853-3068872 | Msa0049660:intron | 45.0% | |
| TGTTTGGAAAGGAAGGGGAA+AGG | - | chr1_2:3068859-3068878 | Msa0049660:intron | 45.0% | |
| GTTTGGAAAGGAAGGGGAAA+GGG | - | chr1_2:3068860-3068879 | Msa0049660:intron | 45.0% | |
| TTTGGAAAGGAAGGGGAAAG+GGG | - | chr1_2:3068861-3068880 | Msa0049660:intron | 45.0% | |
| TGTAGGAAACGTGTTGAAGG+AGG | - | chr1_2:3068944-3068963 | Msa0049660:CDS | 45.0% | |
| ! | CGTGTTGAAGGAGGATTTTG+AGG | - | chr1_2:3068953-3068972 | Msa0049660:CDS | 45.0% |
| GTTTGAGTGTTAGGAGGGAA+AGG | + | chr1_2:3069108-3069127 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTTGAGTGTTAGG+AGG | + | chr1_2:3069114-3069133 | None:intergenic | 45.0% |
| GGTCTAAGTGTAGGAGAATC+AGG | - | chr1_2:3069272-3069291 | Msa0049660:CDS | 45.0% | |
| TCTTGGCATCACAATCTGCA+AGG | + | chr1_2:3069737-3069756 | None:intergenic | 45.0% | |
| CAGATTGTGATGCCAAGACT+GGG | - | chr1_2:3069739-3069758 | Msa0049660:intron | 45.0% | |
| GAAGAAGGAAAGATGTGGGA+AGG | + | chr1_2:3069792-3069811 | None:intergenic | 45.0% | |
| ! | CATAGGTATCTTGGTGACTC+TGG | + | chr1_2:3069832-3069851 | None:intergenic | 45.0% |
| TCAGAAATAAGGACACCGGA+AGG | + | chr1_2:3069925-3069944 | None:intergenic | 45.0% | |
| TGACAACCCTTCAGAAGACA+CGG | - | chr1_2:3069969-3069988 | Msa0049660:intron | 45.0% | |
| ACTCAGAGGTCAGCAAAACA+AGG | + | chr1_2:3070155-3070174 | None:intergenic | 45.0% | |
| ! | ATTTTGTGCACAGAGCTACC+TGG | - | chr1_2:3070336-3070355 | Msa0049660:intron | 45.0% |
| ! | TTTTGTGCACAGAGCTACCT+GGG | - | chr1_2:3070337-3070356 | Msa0049660:intron | 45.0% |
| TCTGCCTGAAGACCTAACAA+CGG | - | chr1_2:3070461-3070480 | Msa0049660:intron | 45.0% | |
| CGTGTATATTTATGCCCCAG+AGG | - | chr1_2:3070530-3070549 | Msa0049660:intron | 45.0% | |
| ! | GTTATGTCCATTGGTAGCAG+TGG | - | chr1_2:3071337-3071356 | Msa0049660:CDS | 45.0% |
| ACTAAACCCACTGCTACCAA+TGG | + | chr1_2:3071347-3071366 | None:intergenic | 45.0% | |
| ! | GTAGCAGTGGGTTTAGTACA+CGG | - | chr1_2:3071350-3071369 | Msa0049660:CDS | 45.0% |
| ! | GTTCTTTCCGTTTGAGACCA+TGG | - | chr1_2:3071439-3071458 | Msa0049660:CDS | 45.0% |
| GTCCTGCAGTTCAATCTGCA+TGG | - | chr1_2:3067789-3067808 | Msa0049660:CDS | 50.0% | |
| GCTACTGTTACTGCTACTGC+CGG | - | chr1_2:3067935-3067954 | Msa0049660:intron | 50.0% | |
| CTCCCAAACCAAGACCAACA+AGG | + | chr1_2:3068012-3068031 | None:intergenic | 50.0% | |
| !! | CTTGTTGGTCTTGGTTTGGG+AGG | - | chr1_2:3068010-3068029 | Msa0049660:intron | 50.0% |
| AGAAACCACGAGGACAAGAC+AGG | + | chr1_2:3068040-3068059 | None:intergenic | 50.0% | |
| CAGGTACCTCTATTAGGAGC+GGG | + | chr1_2:3068073-3068092 | None:intergenic | 50.0% | |
| CCAGGTACCTCTATTAGGAG+CGG | + | chr1_2:3068074-3068093 | None:intergenic | 50.0% | |
| ACCGGAAAACACAACCATCC+AGG | + | chr1_2:3068092-3068111 | None:intergenic | 50.0% | |
| CATGAACTGCGTGCAAAGCT+AGG | + | chr1_2:3068492-3068511 | None:intergenic | 50.0% | |
| GTCTGGGTGTTTGGAAAGGA+AGG | - | chr1_2:3068852-3068871 | Msa0049660:intron | 50.0% | |
| CTGGGTGTTTGGAAAGGAAG+GGG | - | chr1_2:3068854-3068873 | Msa0049660:intron | 50.0% | |
| GAGTAGATCCCCATCTTGTG+TGG | - | chr1_2:3068883-3068902 | Msa0049660:CDS | 50.0% | |
| TAGATCCCCATCTTGTGTGG+AGG | - | chr1_2:3068886-3068905 | Msa0049660:CDS | 50.0% | |
| AGTGTTAGGAGGGAAAGGAG+GGG | + | chr1_2:3069103-3069122 | None:intergenic | 50.0% | |
| GAGTGTTAGGAGGGAAAGGA+GGG | + | chr1_2:3069104-3069123 | None:intergenic | 50.0% | |
| TGAGTGTTAGGAGGGAAAGG+AGG | + | chr1_2:3069105-3069124 | None:intergenic | 50.0% | |
| GGCTACACATAGGAAGGAAG+TGG | + | chr1_2:3069452-3069471 | None:intergenic | 50.0% | |
| GCAGATTGTGATGCCAAGAC+TGG | - | chr1_2:3069738-3069757 | Msa0049660:intron | 50.0% | |
| TTGTGATGCCAAGACTGGGT+TGG | - | chr1_2:3069743-3069762 | Msa0049660:intron | 50.0% | |
| ATTGCAGACAGAGAAGTCCC+AGG | - | chr1_2:3070206-3070225 | Msa0049660:intron | 50.0% | |
| GCCGTAGCAGTGGATAAACT+TGG | - | chr1_2:3070372-3070391 | Msa0049660:intron | 50.0% | |
| CTGCCTGAAGACCTAACAAC+GGG | - | chr1_2:3070462-3070481 | Msa0049660:intron | 50.0% | |
| GCAAGCTCAGTGGGTAGAAT+TGG | - | chr1_2:3071308-3071327 | Msa0049660:CDS | 50.0% | |
| AGCTCAGTGGGTAGAATTGG+TGG | - | chr1_2:3071311-3071330 | Msa0049660:CDS | 50.0% | |
| TCTTGGCCCATGGTCTCAAA+CGG | + | chr1_2:3071449-3071468 | None:intergenic | 50.0% | |
| ATCTTGCAGTTCTTGGCCCA+TGG | + | chr1_2:3071459-3071478 | None:intergenic | 50.0% | |
| GTTCTCGTTTACGCCGGCAT+TGG | - | chr1_2:3067722-3067741 | Msa0049660:CDS | 55.0% | |
| !! | TCGTTTACGCCGGCATTGGT+TGG | - | chr1_2:3067726-3067745 | Msa0049660:CDS | 55.0% |
| !! | GTTGGTCTTGGTTTGGGAGG+CGG | - | chr1_2:3068013-3068032 | Msa0049660:intron | 55.0% |
| !! | CCGCTCCTAATAGAGGTACC+TGG | - | chr1_2:3068071-3068090 | Msa0049660:intron | 55.0% |
| ! | TCCATGTAGCCGACTCCACT+TGG | - | chr1_2:3068435-3068454 | Msa0049660:intron | 55.0% |
| ACCAAGTGGAGTCGGCTACA+TGG | + | chr1_2:3068439-3068458 | None:intergenic | 55.0% | |
| ! | TGCCAAGACTGGGTTGGAGA+TGG | - | chr1_2:3069749-3069768 | Msa0049660:intron | 55.0% |
| AGCCATCTCCAACCCAGTCT+TGG | + | chr1_2:3069754-3069773 | None:intergenic | 55.0% | |
| AGGCCCGTTGTTAGGTCTTC+AGG | + | chr1_2:3070468-3070487 | None:intergenic | 55.0% | |
| !! | CCGGTGGTTCTGACTGATGT+GGG | + | chr1_2:3071278-3071297 | None:intergenic | 55.0% |
| CCCACATCAGTCAGAACCAC+CGG | - | chr1_2:3071275-3071294 | Msa0049660:CDS | 55.0% | |
| !! | ACCGGTGGTTCTGACTGATG+TGG | + | chr1_2:3071279-3071298 | None:intergenic | 55.0% |
| TCAGTCAGAACCACCGGTGT+CGG | - | chr1_2:3071281-3071300 | Msa0049660:CDS | 55.0% | |
| CCACTGCTACGGCTGACAAG+AGG | + | chr1_2:3070365-3070384 | None:intergenic | 60.0% | |
| CCTCTTGTCAGCCGTAGCAG+TGG | - | chr1_2:3070362-3070381 | Msa0049660:intron | 60.0% | |
| TGAGCTTGCGACTCCGACAC+CGG | + | chr1_2:3071297-3071316 | None:intergenic | 60.0% | |
| TGTCGGAGTCGCAAGCTCAG+TGG | - | chr1_2:3071298-3071317 | Msa0049660:CDS | 60.0% | |
| GTCGGAGTCGCAAGCTCAGT+GGG | - | chr1_2:3071299-3071318 | Msa0049660:CDS | 60.0% | |
| GCGGTCCTGTCTTGTCCTCG+TGG | - | chr1_2:3068032-3068051 | Msa0049660:intron | 65.0% | |
| ACGGCTGACAAGAGGAGCCC+AGG | + | chr1_2:3070357-3070376 | None:intergenic | 65.0% | |
| GCTTGCGACTCCGACACCGG+TGG | + | chr1_2:3071294-3071313 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 3067312 | 3071821 | 3067312 | ID=Msa0049660;Name=Msa0049660 |
| chr1_2 | mRNA | 3067312 | 3071821 | 3067312 | ID=Msa0049660-mRNA-1;Parent=Msa0049660;Name=Msa0049660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=195|1|1|1|0.75|0.8|5|307|501 |
| chr1_2 | exon | 3067312 | 3067864 | 3067312 | ID=Msa0049660-mRNA-1:exon:699;Parent=Msa0049660-mRNA-1 |
| chr1_2 | exon | 3068582 | 3068784 | 3068582 | ID=Msa0049660-mRNA-1:exon:698;Parent=Msa0049660-mRNA-1 |
| chr1_2 | exon | 3068866 | 3069391 | 3068866 | ID=Msa0049660-mRNA-1:exon:697;Parent=Msa0049660-mRNA-1 |
| chr1_2 | exon | 3070980 | 3071507 | 3070980 | ID=Msa0049660-mRNA-1:exon:696;Parent=Msa0049660-mRNA-1 |
| chr1_2 | exon | 3071624 | 3071821 | 3071624 | ID=Msa0049660-mRNA-1:exon:695;Parent=Msa0049660-mRNA-1 |
| chr1_2 | five_prime_UTR | 3071627 | 3071821 | 3071627 | ID=Msa0049660-mRNA-1:five_prime_utr;Parent=Msa0049660-mRNA-1 |
| chr1_2 | CDS | 3071624 | 3071626 | 3071624 | ID=Msa0049660-mRNA-1:cds;Parent=Msa0049660-mRNA-1 |
| chr1_2 | CDS | 3070980 | 3071507 | 3070980 | ID=Msa0049660-mRNA-1:cds;Parent=Msa0049660-mRNA-1 |
| chr1_2 | CDS | 3068866 | 3069391 | 3068866 | ID=Msa0049660-mRNA-1:cds;Parent=Msa0049660-mRNA-1 |
| chr1_2 | CDS | 3068582 | 3068784 | 3068582 | ID=Msa0049660-mRNA-1:cds;Parent=Msa0049660-mRNA-1 |
| chr1_2 | CDS | 3067619 | 3067864 | 3067619 | ID=Msa0049660-mRNA-1:cds;Parent=Msa0049660-mRNA-1 |
| chr1_2 | three_prime_UTR | 3067312 | 3067618 | 3067312 | ID=Msa0049660-mRNA-1:three_prime_utr;Parent=Msa0049660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
