Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578560 | XP_003607957.1 | 87.832 | 452 | 18 | 3 | 1 | 416 | 1 | 451 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578560 | sp|Q8VY09|DJ1C_ARATH | 54.225 | 426 | 148 | 6 | 29 | 416 | 56 | 472 | 4.39e-151 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578560 | G7JL67 | 87.832 | 452 | 18 | 3 | 1 | 416 | 1 | 451 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0241940 | Msa0578560 | 0.819281 | 1.261428e-52 | -8.615850e-47 |
| Msa0519100 | Msa0578560 | 0.802418 | 5.663827e-49 | -8.615850e-47 |
| Msa0578560 | Msa0651630 | 0.950978 | 5.362517e-109 | -8.615850e-47 |
| Msa0578560 | Msa1455560 | 0.805858 | 1.089873e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578560 | MtrunA17_Chr4g0044761 | 87.832 | 452 | 18 | 3 | 1 | 416 | 1 | 451 | 0.0 | 735 |
| Msa0578560 | MtrunA17_Chr2g0316281 | 45.178 | 394 | 176 | 5 | 60 | 414 | 48 | 440 | 1.95e-95 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578560 | AT4G34020.1 | 54.225 | 426 | 148 | 6 | 29 | 416 | 56 | 472 | 4.46e-152 | 439 |
| Msa0578560 | AT4G34020.2 | 54.190 | 358 | 126 | 4 | 96 | 416 | 81 | 437 | 7.01e-131 | 384 |
| Msa0578560 | AT4G34020.2 | 33.333 | 180 | 82 | 3 | 65 | 207 | 253 | 431 | 8.58e-18 | 85.5 |
| Msa0578560 | AT4G34020.3 | 56.908 | 304 | 107 | 3 | 136 | 416 | 16 | 318 | 3.07e-116 | 342 |
| Msa0578560 | AT4G34020.3 | 33.333 | 180 | 82 | 3 | 65 | 207 | 134 | 312 | 5.15e-18 | 84.7 |
| Msa0578560 | AT4G34020.3 | 37.037 | 108 | 67 | 1 | 305 | 411 | 3 | 110 | 2.19e-12 | 68.2 |
| Msa0578560 | AT4G34020.4 | 56.908 | 304 | 107 | 3 | 136 | 416 | 16 | 318 | 3.07e-116 | 342 |
| Msa0578560 | AT4G34020.4 | 33.333 | 180 | 82 | 3 | 65 | 207 | 134 | 312 | 5.15e-18 | 84.7 |
| Msa0578560 | AT4G34020.4 | 37.037 | 108 | 67 | 1 | 305 | 411 | 3 | 110 | 2.19e-12 | 68.2 |
| Msa0578560 | AT1G53280.1 | 42.180 | 422 | 193 | 8 | 21 | 398 | 11 | 425 | 2.07e-93 | 288 |
| Msa0578560 | AT1G53280.1 | 42.714 | 199 | 111 | 3 | 215 | 411 | 37 | 234 | 8.51e-42 | 153 |
| Msa0578560 | AT3G14990.1 | 44.125 | 383 | 173 | 5 | 60 | 402 | 2 | 383 | 1.70e-87 | 271 |
| Msa0578560 | AT3G14990.1 | 44.633 | 177 | 95 | 2 | 233 | 406 | 7 | 183 | 2.70e-41 | 150 |
| Msa0578560 | AT3G14990.1 | 35.556 | 180 | 80 | 3 | 65 | 208 | 213 | 392 | 1.42e-18 | 87.4 |
| Msa0578560 | AT3G14990.3 | 43.213 | 361 | 164 | 5 | 82 | 402 | 1 | 360 | 7.29e-80 | 251 |
| Msa0578560 | AT3G14990.3 | 42.500 | 160 | 89 | 2 | 250 | 406 | 1 | 160 | 3.91e-33 | 128 |
| Msa0578560 | AT3G14990.3 | 35.556 | 180 | 80 | 3 | 65 | 208 | 190 | 369 | 1.27e-18 | 87.4 |
| Msa0578560 | AT3G14990.2 | 43.213 | 361 | 164 | 5 | 82 | 402 | 1 | 360 | 7.29e-80 | 251 |
| Msa0578560 | AT3G14990.2 | 42.500 | 160 | 89 | 2 | 250 | 406 | 1 | 160 | 3.91e-33 | 128 |
| Msa0578560 | AT3G14990.2 | 35.556 | 180 | 80 | 3 | 65 | 208 | 190 | 369 | 1.27e-18 | 87.4 |
| Msa0578560 | AT1G53280.2 | 41.622 | 370 | 165 | 8 | 21 | 346 | 11 | 373 | 2.01e-78 | 247 |
| Msa0578560 | AT1G53280.2 | 42.714 | 199 | 111 | 3 | 215 | 411 | 37 | 234 | 2.75e-42 | 153 |
Find 144 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGGCTGAACAGCTATT+TGG | 0.148501 | 4_1:-83107833 | Msa0578560:CDS |
| GCTGAGGAAAATAGGTTATT+TGG | 0.191615 | 4_1:-83108246 | Msa0578560:CDS |
| TAATTTATCAGCAACAATTT+TGG | 0.218461 | 4_1:+83106577 | None:intergenic |
| CCATAACTCCAGTTGTTAAA+AGG | 0.218517 | 4_1:-83105157 | Msa0578560:three_prime_UTR |
| TAATCAAAACAATGCATTAA+AGG | 0.219818 | 4_1:+83105371 | None:intergenic |
| CGCAATTCCGGTTAGGATAA+TGG | 0.246932 | 4_1:+83108848 | None:intergenic |
| AAAGGGTGGATAAGGGTTTA+AGG | 0.250134 | 4_1:+83108722 | None:intergenic |
| CTTTGGCTGAACAGCTATTT+GGG | 0.251896 | 4_1:-83107832 | Msa0578560:CDS |
| GCTATTGTGAGCAAGTTATT+TGG | 0.265797 | 4_1:-83105561 | Msa0578560:CDS |
| GTAAACAAGCTGAGGAAAAT+AGG | 0.293312 | 4_1:-83108254 | Msa0578560:CDS |
| ATGGGAAGAAGAACTTTCTT+TGG | 0.297915 | 4_1:+83108622 | None:intergenic |
| AAGGGAGGTTGCTGAATTCT+TGG | 0.306017 | 4_1:-83107798 | Msa0578560:intron |
| TTACATGTTTGCTTTAACTT+TGG | 0.307717 | 4_1:-83107849 | Msa0578560:CDS |
| GTTCTTCTTCCCATCGGTTT+GGG | 0.324769 | 4_1:-83108613 | Msa0578560:CDS |
| TTTGGAGGGGAGGCATTTGT+AGG | 0.333845 | 4_1:+83108640 | None:intergenic |
| AATCAAAACAATGCATTAAA+GGG | 0.334199 | 4_1:+83105372 | None:intergenic |
| TGGAGGTGAAAGGGTGGATA+AGG | 0.339247 | 4_1:+83108714 | None:intergenic |
| CTGTTACCACAGCGCAATTC+CGG | 0.342867 | 4_1:+83108836 | None:intergenic |
| AGGTGTGATAGAAAATTTAT+AGG | 0.356919 | 4_1:-83105449 | Msa0578560:three_prime_UTR |
| TCGAATATTCAGGTTTCAAA+AGG | 0.362449 | 4_1:-83107902 | Msa0578560:intron |
| CGGTTTGGGCACCGAGGAAA+TGG | 0.366593 | 4_1:-83108599 | Msa0578560:CDS |
| AATTCAGCTGGAAGAATATA+CGG | 0.369869 | 4_1:-83105847 | Msa0578560:CDS |
| GAAATGGAAAGGGTGGAGTT+TGG | 0.377277 | 4_1:+83108682 | None:intergenic |
| TTTAAGATTGTCCATGGAAG+AGG | 0.381844 | 4_1:+83105671 | None:intergenic |
| AGTTCTTCTTCCCATCGGTT+TGG | 0.390498 | 4_1:-83108614 | Msa0578560:CDS |
| TGAGAAAACTCTTGGAGTCT+TGG | 0.397662 | 4_1:-83106612 | Msa0578560:CDS |
| TGGTGGTGGAGAGGTGGAAA+TGG | 0.402367 | 4_1:+83108666 | None:intergenic |
| AAAACAAATCAGGCTTGGGC+TGG | 0.402388 | 4_1:+83105417 | None:intergenic |
| TTTAAGGGTGGGAGTGGATG+TGG | 0.403245 | 4_1:+83108738 | None:intergenic |
| AGGAGTTCAATGAAATTGAT+TGG | 0.403621 | 4_1:-83106847 | Msa0578560:CDS |
| GAGGCATTTGTAGGTGTTGG+TGG | 0.413422 | 4_1:+83108649 | None:intergenic |
| ATGTGGTTTCAAGTACTTGT+AGG | 0.413572 | 4_1:-83105469 | Msa0578560:three_prime_UTR |
| ACACCACCTGAAAACAAATC+AGG | 0.421102 | 4_1:+83105407 | None:intergenic |
| GGGGAGGCATTTGTAGGTGT+TGG | 0.426206 | 4_1:+83108646 | None:intergenic |
| TCTTCAGAACCATGCGCGAT+TGG | 0.430665 | 4_1:+83106701 | None:intergenic |
| GCATTTGTAGGTGTTGGTGG+TGG | 0.431242 | 4_1:+83108652 | None:intergenic |
| TGACACTGATAGATATTCTA+AGG | 0.431244 | 4_1:-83106667 | Msa0578560:CDS |
| GCAAACATGTAAGCAGTTCC+AGG | 0.433638 | 4_1:+83107860 | None:intergenic |
| GCTTCTGTTGAGAAAACTCT+TGG | 0.435054 | 4_1:-83106620 | Msa0578560:CDS |
| ACCTGAAAACAAATCAGGCT+TGG | 0.437458 | 4_1:+83105412 | None:intergenic |
| CATAACTCCAGTTGTTAAAA+GGG | 0.438753 | 4_1:-83105156 | Msa0578560:three_prime_UTR |
| TTTGATCTCATTGCTTTACC+TGG | 0.440793 | 4_1:-83108433 | Msa0578560:CDS |
| GTGAGCAAGTTATTTGGTAA+TGG | 0.442489 | 4_1:-83105555 | Msa0578560:CDS |
| CTTCAGAACCATGCGCGATT+GGG | 0.443538 | 4_1:+83106702 | None:intergenic |
| ACATGATTTGATTATTCTCC+CGG | 0.445948 | 4_1:-83106531 | Msa0578560:intron |
| AAGAAAACCATTATCCTAAC+CGG | 0.458652 | 4_1:-83108855 | Msa0578560:five_prime_UTR |
| GTGGATGTGGAGATGGTGAA+TGG | 0.459373 | 4_1:+83108751 | None:intergenic |
| TAAGGGTTTAAGGGTGGGAG+TGG | 0.460310 | 4_1:+83108732 | None:intergenic |
| CTCAAAGAACAAAATTCAGC+TGG | 0.460880 | 4_1:-83105859 | Msa0578560:CDS |
| AAACAAATCAGGCTTGGGCT+GGG | 0.463419 | 4_1:+83105418 | None:intergenic |
| CCTTGTTTGTGTAGAATAGC+AGG | 0.466355 | 4_1:+83105808 | None:intergenic |
| GGTGGGAGTGGATGTGGAGA+TGG | 0.466580 | 4_1:+83108744 | None:intergenic |
| GGTGGATAAGGGTTTAAGGG+TGG | 0.469228 | 4_1:+83108726 | None:intergenic |
| CAGCTTCAAGTTGAAGCTGC+TGG | 0.470478 | 4_1:-83108508 | Msa0578560:CDS |
| AAATTTCAGGGAGGAACTGC+TGG | 0.472046 | 4_1:-83105922 | Msa0578560:intron |
| CACTGTAACGGAGTTTGCAT+TGG | 0.475926 | 4_1:-83105583 | Msa0578560:CDS |
| CTGCAGAGTTGAAAATATGC+TGG | 0.476502 | 4_1:-83105202 | Msa0578560:three_prime_UTR |
| GAGTGGAGCGTGGAGGTGAA+AGG | 0.477114 | 4_1:+83108704 | None:intergenic |
| ATCCACGTCCTTCGTCGTGC+CGG | 0.478410 | 4_1:-83108562 | Msa0578560:CDS |
| GGAAGAAGAACTTTCTTTGG+AGG | 0.479670 | 4_1:+83108625 | None:intergenic |
| AATGAAATTGATTGGTCTGT+TGG | 0.480796 | 4_1:-83106839 | Msa0578560:CDS |
| GTGGAGTTTGGAGTGGAGCG+TGG | 0.481874 | 4_1:+83108694 | None:intergenic |
| CTTACAACGAGCCGTGGCCC+TGG | 0.484485 | 4_1:-83107878 | Msa0578560:CDS |
| GATTCAGAGGACATGGTGAT+TGG | 0.485961 | 4_1:+83105337 | None:intergenic |
| GGAGGTGAAAGGGTGGATAA+GGG | 0.486111 | 4_1:+83108715 | None:intergenic |
| CCTGAAAACAAATCAGGCTT+GGG | 0.487349 | 4_1:+83105413 | None:intergenic |
| CGAATATTCAGGTTTCAAAA+GGG | 0.492167 | 4_1:-83107901 | Msa0578560:intron |
| ATCAAAACAATGCATTAAAG+GGG | 0.494622 | 4_1:+83105373 | None:intergenic |
| GATGCCGTAGTAGTTATTGA+TGG | 0.498779 | 4_1:-83105633 | Msa0578560:CDS |
| AGTGGAGCGTGGAGGTGAAA+GGG | 0.500650 | 4_1:+83108705 | None:intergenic |
| TGGGGAGTCTGTTGCAAGGG+AGG | 0.503756 | 4_1:-83107813 | Msa0578560:CDS |
| ACCACAGCGCAATTCCGGTT+AGG | 0.507296 | 4_1:+83108841 | None:intergenic |
| CTTGGAGTCTTGGCTTCTCA+AGG | 0.507724 | 4_1:-83106602 | Msa0578560:CDS |
| ACACAAACAAGGTTTACTAA+AGG | 0.507836 | 4_1:-83105797 | Msa0578560:intron |
| TGTAGGTGTTGGTGGTGGAG+AGG | 0.514145 | 4_1:+83108657 | None:intergenic |
| GCTCTAGTAGTCTATTTCCT+AGG | 0.517668 | 4_1:+83105492 | None:intergenic |
| TTCCTCGGTGCCCAAACCGA+TGG | 0.518190 | 4_1:+83108603 | None:intergenic |
| GTTTCAGCTTAGTTGAACAT+TGG | 0.518754 | 4_1:-83105241 | Msa0578560:three_prime_UTR |
| CACCGGCACGACGAAGGACG+TGG | 0.522820 | 4_1:+83108560 | None:intergenic |
| AACAAATCAGGCTTGGGCTG+GGG | 0.522982 | 4_1:+83105419 | None:intergenic |
| AATAGCAGGTGAGGAGCAGA+CGG | 0.534057 | 4_1:+83105822 | None:intergenic |
| TCCTCGGTGCCCAAACCGAT+GGG | 0.534372 | 4_1:+83108604 | None:intergenic |
| CAAGGCAAAAGCGTAACAGC+AGG | 0.534810 | 4_1:+83108207 | None:intergenic |
| AAGGGTGGATAAGGGTTTAA+GGG | 0.536320 | 4_1:+83108723 | None:intergenic |
| CTGAGGCTCAACGGAAGCTA+CGG | 0.539984 | 4_1:+83108528 | None:intergenic |
| GATAACGGCTTCCATTTCCT+CGG | 0.545948 | 4_1:+83108588 | None:intergenic |
| AAGAACTTTCTTTGGAGGGG+AGG | 0.546701 | 4_1:+83108630 | None:intergenic |
| TGGAGAGGTGGAAATGGAAA+GGG | 0.548727 | 4_1:+83108672 | None:intergenic |
| TGTAAGCAGTTCCAGGGCCA+CGG | 0.552580 | 4_1:+83107867 | None:intergenic |
| AGGTGTTGGTGGTGGAGAGG+TGG | 0.553200 | 4_1:+83108660 | None:intergenic |
| GTGGAGAGGTGGAAATGGAA+AGG | 0.553891 | 4_1:+83108671 | None:intergenic |
| AACTTGAAGCTGAGGCTCAA+CGG | 0.557365 | 4_1:+83108519 | None:intergenic |
| AGTCTTGTTGTGGCGGTGGA+AGG | 0.558922 | 4_1:+83108778 | None:intergenic |
| GAGGAACTGCTGGCGCTCAA+AGG | 0.560324 | 4_1:-83105912 | Msa0578560:CDS |
| AAGAAAGTTCTTCTTCCCAT+CGG | 0.562766 | 4_1:-83108619 | Msa0578560:CDS |
| GGGTCTCTTGAAGAGAAAGA+AGG | 0.562932 | 4_1:-83108184 | Msa0578560:intron |
| AGAGGTGGAAATGGAAAGGG+TGG | 0.564739 | 4_1:+83108675 | None:intergenic |
| TGATGATAATGTATCTAAGA+AGG | 0.567147 | 4_1:-83106867 | Msa0578560:CDS |
| TGCAGAGTTGAAAATATGCT+GGG | 0.567483 | 4_1:-83105201 | Msa0578560:three_prime_UTR |
| GTGGATAAGGGTTTAAGGGT+GGG | 0.568460 | 4_1:+83108727 | None:intergenic |
| AGAGAGTCTTGTTGTGGCGG+TGG | 0.569839 | 4_1:+83108774 | None:intergenic |
| TTTCTCTTCAAGAGACCCCA+AGG | 0.572489 | 4_1:+83108189 | None:intergenic |
| AAGGTTGAGGCAGAAGAAGT+AGG | 0.575689 | 4_1:+83108797 | None:intergenic |
| GAAGAAGAACTTTCTTTGGA+GGG | 0.579982 | 4_1:+83108626 | None:intergenic |
| CCTGCTATTCTACACAAACA+AGG | 0.583795 | 4_1:-83105808 | Msa0578560:CDS |
| TTTGCCATCAATAACTACTA+CGG | 0.585134 | 4_1:+83105629 | None:intergenic |
| TTAAGATTGTCCATGGAAGA+GGG | 0.586260 | 4_1:+83105672 | None:intergenic |
| GGAAAGGGTGGAGTTTGGAG+TGG | 0.586763 | 4_1:+83108687 | None:intergenic |
| AAGGACGTGGATTAAGATAA+CGG | 0.587327 | 4_1:+83108573 | None:intergenic |
| ATTTGGGGAGTCTGTTGCAA+GGG | 0.590925 | 4_1:-83107816 | Msa0578560:CDS |
| TTTGGCTGAACAGCTATTTG+GGG | 0.595171 | 4_1:-83107831 | Msa0578560:CDS |
| TGAGGGACTTGCCACTGTAA+CGG | 0.595366 | 4_1:-83105595 | Msa0578560:CDS |
| GTTCTCATCCCAATCGCGCA+TGG | 0.596389 | 4_1:-83106710 | Msa0578560:CDS |
| TACAGCTCATCCCTCTTCCA+TGG | 0.598748 | 4_1:-83105682 | Msa0578560:CDS |
| GATCTCATTGCTTTACCTGG+AGG | 0.601166 | 4_1:-83108430 | Msa0578560:CDS |
| TCCGTCTTTAAGATTGTCCA+TGG | 0.601178 | 4_1:+83105665 | None:intergenic |
| AAAATGAGATTCAGAGGACA+TGG | 0.603668 | 4_1:+83105330 | None:intergenic |
| GCAGCTTCAACTTGAAGCTG+AGG | 0.605203 | 4_1:+83108511 | None:intergenic |
| AAGAAGAACTTTCTTTGGAG+GGG | 0.605923 | 4_1:+83108627 | None:intergenic |
| TATTTGGGGAGTCTGTTGCA+AGG | 0.607338 | 4_1:-83107817 | Msa0578560:CDS |
| AAGAAGTAGGAGCAACGACA+TGG | 0.611487 | 4_1:+83108810 | None:intergenic |
| GTTGTGGCGGTGGAAGGTTG+AGG | 0.612790 | 4_1:+83108784 | None:intergenic |
| GGAGCGTGGAGGTGAAAGGG+TGG | 0.616000 | 4_1:+83108708 | None:intergenic |
| AGAGCAAGAAGTGTAGCAGA+AGG | 0.616554 | 4_1:-83105531 | Msa0578560:CDS |
| TCCATGGACAATCTTAAAGA+CGG | 0.618927 | 4_1:-83105666 | Msa0578560:CDS |
| AATCACATGTAAACAAGCTG+AGG | 0.624888 | 4_1:-83108262 | Msa0578560:CDS |
| AGCTACGGTGACATGAGCAC+CGG | 0.629319 | 4_1:+83108543 | None:intergenic |
| CATGAGCACCGGCACGACGA+AGG | 0.630227 | 4_1:+83108554 | None:intergenic |
| CTTCAAGTTGAAGCTGCTGG+TGG | 0.632239 | 4_1:-83108505 | Msa0578560:CDS |
| AAATAGACTACTAGAGCATG+TGG | 0.634408 | 4_1:-83105486 | Msa0578560:exon |
| GGCAAAGTGATCACTTGTGA+GGG | 0.639904 | 4_1:-83105612 | Msa0578560:CDS |
| GAGTTTGGAGTGGAGCGTGG+AGG | 0.641201 | 4_1:+83108697 | None:intergenic |
| CAAACATGTAAGCAGTTCCA+GGG | 0.641827 | 4_1:+83107861 | None:intergenic |
| AAAGGGCTTACAACGAGCCG+TGG | 0.643584 | 4_1:-83107884 | Msa0578560:CDS |
| TTTGTGTAGAATAGCAGGTG+AGG | 0.652165 | 4_1:+83105813 | None:intergenic |
| GAATGGAGAGAGTCTTGTTG+TGG | 0.655286 | 4_1:+83108768 | None:intergenic |
| TGGAGAGAGTCTTGTTGTGG+CGG | 0.659112 | 4_1:+83108771 | None:intergenic |
| CAATGCAAACTCCGTTACAG+TGG | 0.660685 | 4_1:+83105584 | None:intergenic |
| AAGACAGTAACCTACACTGG+GGG | 0.666507 | 4_1:+83106808 | None:intergenic |
| TCAAAACAATGCATTAAAGG+GGG | 0.667560 | 4_1:+83105374 | None:intergenic |
| TCCTAACCGGAATTGCGCTG+TGG | 0.673964 | 4_1:-83108842 | Msa0578560:five_prime_UTR |
| TCCCATCGGTTTGGGCACCG+AGG | 0.675009 | 4_1:-83108605 | Msa0578560:CDS |
| TGGCAAAGTGATCACTTGTG+AGG | 0.698032 | 4_1:-83105613 | Msa0578560:CDS |
| AGACAGTAACCTACACTGGG+GGG | 0.717258 | 4_1:+83106809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTCTATATTATTTATTTTTA+AGG | + | chr4_1:83107811-83107830 | None:intergenic | 10.0% |
| !!! | TTTACTTTAGTTTTAGATAT+TGG | - | chr4_1:83105860-83105879 | Msa0578560:CDS | 15.0% |
| !!! | CATGTTTTTCTTTTTTATTT+TGG | - | chr4_1:83105999-83106018 | Msa0578560:intron | 15.0% |
| !!! | TTCTTTTTTATTTTGGTATT+TGG | - | chr4_1:83106006-83106025 | Msa0578560:intron | 15.0% |
| !! | AAATGTTATTAAAAGTAAAC+AGG | + | chr4_1:83106567-83106586 | None:intergenic | 15.0% |
| !! | ATTTCAAAAAACAATGAAAA+CGG | - | chr4_1:83106694-83106713 | Msa0578560:CDS | 15.0% |
| !! | TAAATAATATAGAGCATATA+TGG | - | chr4_1:83107817-83107836 | Msa0578560:CDS | 15.0% |
| !! | ACCTATAAACTTATATTTAT+GGG | - | chr4_1:83107986-83108005 | Msa0578560:intron | 15.0% |
| !!! | ATTTTATGCATTTTTGCTAT+AGG | - | chr4_1:83106265-83106284 | Msa0578560:intron | 20.0% |
| !!! | TTTTATGCATTTTTGCTATA+GGG | - | chr4_1:83106266-83106285 | Msa0578560:intron | 20.0% |
| !!! | ATCTGTTCATTTTAAATTAG+TGG | - | chr4_1:83106600-83106619 | Msa0578560:CDS | 20.0% |
| !!! | TTGATATTTTCACTGTTAAA+TGG | - | chr4_1:83106721-83106740 | Msa0578560:intron | 20.0% |
| !!! | TGATATTTTCACTGTTAAAT+GGG | - | chr4_1:83106722-83106741 | Msa0578560:intron | 20.0% |
| !! | ATCTTCAATGTTCAAAATTT+AGG | - | chr4_1:83106843-83106862 | Msa0578560:CDS | 20.0% |
| !!! | TAATTTATCAGCAACAATTT+TGG | + | chr4_1:83107444-83107463 | None:intergenic | 20.0% |
| !!! | TTTTCATGAATTCATATTAC+CGG | + | chr4_1:83107509-83107528 | None:intergenic | 20.0% |
| !! | CACCTATAAACTTATATTTA+TGG | - | chr4_1:83107985-83108004 | Msa0578560:intron | 20.0% |
| !! | CCTATAAACTTATATTTATG+GGG | - | chr4_1:83107987-83108006 | Msa0578560:intron | 20.0% |
| !! | AATCAAAACAATGCATTAAA+GGG | + | chr4_1:83108649-83108668 | None:intergenic | 20.0% |
| !! | TAATCAAAACAATGCATTAA+AGG | + | chr4_1:83108650-83108669 | None:intergenic | 20.0% |
| !!! | TTTATTTTGGTATTTGGATG+AGG | - | chr4_1:83106012-83106031 | Msa0578560:intron | 25.0% |
| !! | TTACATGTTTGCTTTAACTT+TGG | - | chr4_1:83106169-83106188 | Msa0578560:intron | 25.0% |
| !! | AATTTTGCTTGGAATCTAAA+AGG | - | chr4_1:83106541-83106560 | Msa0578560:CDS | 25.0% |
| !! | TTCATTTTAAATTAGTGGCA+AGG | - | chr4_1:83106605-83106624 | Msa0578560:CDS | 25.0% |
| ! | TAGTAAATAATTGTGTTCGA+GGG | - | chr4_1:83106644-83106663 | Msa0578560:CDS | 25.0% |
| ! | TTTGAACATTGAAGATGTAT+TGG | + | chr4_1:83106839-83106858 | None:intergenic | 25.0% |
| ! | TCAGAAACTGTAAAAGAAAA+TGG | - | chr4_1:83106884-83106903 | Msa0578560:CDS | 25.0% |
| ! | GTTGAAATGAAAATGAAAAC+AGG | - | chr4_1:83106945-83106964 | Msa0578560:intron | 25.0% |
| ! | GAAAATGAAAACAGGAAATA+TGG | - | chr4_1:83106953-83106972 | Msa0578560:intron | 25.0% |
| ! | ATCCAGATTTCAAAATTTCA+GGG | + | chr4_1:83106991-83107010 | None:intergenic | 25.0% |
| ! | AACTATCATAAAAGAAGGAA+GGG | + | chr4_1:83107119-83107138 | None:intergenic | 25.0% |
| ! | TCATCAACTATCATAAAAGA+AGG | + | chr4_1:83107124-83107143 | None:intergenic | 25.0% |
| !! | TGATGATAATGTATCTAAGA+AGG | - | chr4_1:83107151-83107170 | Msa0578560:intron | 25.0% |
| ! | TTTCATGAATTCATATTACC+GGG | + | chr4_1:83107508-83107527 | None:intergenic | 25.0% |
| ! | ATTTCTCATCAAACATTTGT+AGG | - | chr4_1:83107844-83107863 | Msa0578560:CDS | 25.0% |
| ! | CCCCATAAATATAAGTTTAT+AGG | + | chr4_1:83107990-83108009 | None:intergenic | 25.0% |
| ! | ATCGTTTAATTCTTCAGATA+AGG | + | chr4_1:83108029-83108048 | None:intergenic | 25.0% |
| ! | TAAGATTGTCATGAAATTTC+AGG | - | chr4_1:83108083-83108102 | Msa0578560:intron | 25.0% |
| ! | AAGATTGTCATGAAATTTCA+GGG | - | chr4_1:83108084-83108103 | Msa0578560:intron | 25.0% |
| !!! | AACAGAAAAGGATTTTAGTA+AGG | + | chr4_1:83108301-83108320 | None:intergenic | 25.0% |
| !! | CTAAAATCCTTTTCTGTTAA+AGG | - | chr4_1:83108303-83108322 | Msa0578560:intron | 25.0% |
| ! | TTCTTATCCTTTAACAGAAA+AGG | + | chr4_1:83108313-83108332 | None:intergenic | 25.0% |
| !! | TTTTCTGTTAAAGGATAAGA+AGG | - | chr4_1:83108312-83108331 | Msa0578560:intron | 25.0% |
| ! | AGGTGTGATAGAAAATTTAT+AGG | - | chr4_1:83108569-83108588 | Msa0578560:CDS | 25.0% |
| ! | ATCAAAACAATGCATTAAAG+GGG | + | chr4_1:83108648-83108667 | None:intergenic | 25.0% |
| AAGAAAACCATTATCCTAAC+CGG | - | chr4_1:83105163-83105182 | Msa0578560:three_prime_UTR | 30.0% | |
| ! | TCGAATATTCAGGTTTCAAA+AGG | - | chr4_1:83106116-83106135 | Msa0578560:intron | 30.0% |
| ! | CGAATATTCAGGTTTCAAAA+GGG | - | chr4_1:83106117-83106136 | Msa0578560:intron | 30.0% |
| TAGGGAAGAAATGAATACTT+AGG | - | chr4_1:83106284-83106303 | Msa0578560:intron | 30.0% | |
| CTTGAAGTCAACATTATAAC+TGG | - | chr4_1:83106312-83106331 | Msa0578560:intron | 30.0% | |
| TCAATTTGTAAGCCCTTAAT+TGG | - | chr4_1:83106376-83106395 | Msa0578560:intron | 30.0% | |
| TGAGTTATCACACCAATTAA+GGG | + | chr4_1:83106391-83106410 | None:intergenic | 30.0% | |
| ATGAGTTATCACACCAATTA+AGG | + | chr4_1:83106392-83106411 | None:intergenic | 30.0% | |
| ACATACTGAATTAGTTGAAC+TGG | - | chr4_1:83106465-83106484 | Msa0578560:intron | 30.0% | |
| ! | ATCATTTTGCATCAATCCTT+TGG | + | chr4_1:83106520-83106539 | None:intergenic | 30.0% |
| ! | GCAAAATGATGAATTTTGCT+TGG | - | chr4_1:83106530-83106549 | Msa0578560:intron | 30.0% |
| GTAGTAAATAATTGTGTTCG+AGG | - | chr4_1:83106643-83106662 | Msa0578560:CDS | 30.0% | |
| ! | TTTTCACTGTTAAATGGGAT+TGG | - | chr4_1:83106727-83106746 | Msa0578560:intron | 30.0% |
| ACATTATACATCTAACAGCT+TGG | - | chr4_1:83106792-83106811 | Msa0578560:intron | 30.0% | |
| CATTATACATCTAACAGCTT+GGG | - | chr4_1:83106793-83106812 | Msa0578560:intron | 30.0% | |
| AACTGTAAAAGAAAATGGTG+CGG | - | chr4_1:83106889-83106908 | Msa0578560:intron | 30.0% | |
| GATCCAGATTTCAAAATTTC+AGG | + | chr4_1:83106992-83107011 | None:intergenic | 30.0% | |
| !!! | AATTTTGAAATCTGGATCCT+AGG | - | chr4_1:83106994-83107013 | Msa0578560:intron | 30.0% |
| ATAAATCAACACCAAAACCT+AGG | + | chr4_1:83107014-83107033 | None:intergenic | 30.0% | |
| CAACTATCATAAAAGAAGGA+AGG | + | chr4_1:83107120-83107139 | None:intergenic | 30.0% | |
| AGGAGTTCAATGAAATTGAT+TGG | - | chr4_1:83107171-83107190 | Msa0578560:intron | 30.0% | |
| !! | AATGAAATTGATTGGTCTGT+TGG | - | chr4_1:83107179-83107198 | Msa0578560:intron | 30.0% |
| TGACACTGATAGATATTCTA+AGG | - | chr4_1:83107351-83107370 | Msa0578560:intron | 30.0% | |
| ACATGATTTGATTATTCTCC+CGG | - | chr4_1:83107487-83107506 | Msa0578560:intron | 30.0% | |
| !!! | ATGAGAACTGACTTTTTTGA+TGG | + | chr4_1:83107605-83107624 | None:intergenic | 30.0% |
| AATCATATACTTCTGCAATG+TGG | + | chr4_1:83107755-83107774 | None:intergenic | 30.0% | |
| GATAAGGACTACAATTTGAA+GGG | + | chr4_1:83108013-83108032 | None:intergenic | 30.0% | |
| AGATAAGGACTACAATTTGA+AGG | + | chr4_1:83108014-83108033 | None:intergenic | 30.0% | |
| AATTCAGCTGGAAGAATATA+CGG | - | chr4_1:83108171-83108190 | Msa0578560:intron | 30.0% | |
| ACACAAACAAGGTTTACTAA+AGG | - | chr4_1:83108221-83108240 | Msa0578560:CDS | 30.0% | |
| GAATCACAATGGTAACAAAA+GGG | + | chr4_1:83108256-83108275 | None:intergenic | 30.0% | |
| AGAATCACAATGGTAACAAA+AGG | + | chr4_1:83108257-83108276 | None:intergenic | 30.0% | |
| AATTGGATCAAGAATCACAA+TGG | + | chr4_1:83108267-83108286 | None:intergenic | 30.0% | |
| TTTGCCATCAATAACTACTA+CGG | + | chr4_1:83108392-83108411 | None:intergenic | 30.0% | |
| TCAAAACAATGCATTAAAGG+GGG | + | chr4_1:83108647-83108666 | None:intergenic | 30.0% | |
| ATAGGAAAAAGTTACCTACA+GGG | - | chr4_1:83108724-83108743 | Msa0578560:CDS | 30.0% | |
| ! | ATTTTCAACTCTGCAGAATA+TGG | + | chr4_1:83108812-83108831 | None:intergenic | 30.0% |
| CATAACTCCAGTTGTTAAAA+GGG | - | chr4_1:83108862-83108881 | Msa0578560:five_prime_UTR | 30.0% | |
| ! | AAGAAGAACTTTCTTTGGAG+GGG | + | chr4_1:83105394-83105413 | None:intergenic | 35.0% |
| GAAGAAGAACTTTCTTTGGA+GGG | + | chr4_1:83105395-83105414 | None:intergenic | 35.0% | |
| ATGGGAAGAAGAACTTTCTT+TGG | + | chr4_1:83105399-83105418 | None:intergenic | 35.0% | |
| AAGAAAGTTCTTCTTCCCAT+CGG | - | chr4_1:83105399-83105418 | Msa0578560:three_prime_UTR | 35.0% | |
| ! | AAGGACGTGGATTAAGATAA+CGG | + | chr4_1:83105448-83105467 | None:intergenic | 35.0% |
| TTTGATCTCATTGCTTTACC+TGG | - | chr4_1:83105585-83105604 | Msa0578560:CDS | 35.0% | |
| AATCACATGTAAACAAGCTG+AGG | - | chr4_1:83105756-83105775 | Msa0578560:intron | 35.0% | |
| GTAAACAAGCTGAGGAAAAT+AGG | - | chr4_1:83105764-83105783 | Msa0578560:intron | 35.0% | |
| GCTGAGGAAAATAGGTTATT+TGG | - | chr4_1:83105772-83105791 | Msa0578560:intron | 35.0% | |
| ! | AGTTTGATTTCGTGCATGTT+TGG | - | chr4_1:83105883-83105902 | Msa0578560:CDS | 35.0% |
| TGTTATCTTGCAACACAAAC+TGG | + | chr4_1:83106048-83106067 | None:intergenic | 35.0% | |
| GGTGGAAAACAAAAATCCAA+AGG | - | chr4_1:83106501-83106520 | Msa0578560:intron | 35.0% | |
| ATAATTGTGTTCGAGGGAAA+TGG | - | chr4_1:83106650-83106669 | Msa0578560:CDS | 35.0% | |
| !!! | TCATTCTTTGAGCTAGCTTT+TGG | + | chr4_1:83106760-83106779 | None:intergenic | 35.0% |
| ACTGTAAAAGAAAATGGTGC+GGG | - | chr4_1:83106890-83106909 | Msa0578560:intron | 35.0% | |
| !!! | GACCCTGAAATTTTGAAATC+TGG | - | chr4_1:83106986-83107005 | Msa0578560:intron | 35.0% |
| ATCAGATATCACAGAATGGT+AGG | + | chr4_1:83107055-83107074 | None:intergenic | 35.0% | |
| ATGCATCAGATATCACAGAA+TGG | + | chr4_1:83107059-83107078 | None:intergenic | 35.0% | |
| ATAAGACAGTAACCTACACT+GGG | + | chr4_1:83107215-83107234 | None:intergenic | 35.0% | |
| TATAAGACAGTAACCTACAC+TGG | + | chr4_1:83107216-83107235 | None:intergenic | 35.0% | |
| ACATGTATGTTATGCTAACC+AGG | - | chr4_1:83107286-83107305 | Msa0578560:intron | 35.0% | |
| !!! | GCTGCATTTTTTTTTGTCTG+TGG | - | chr4_1:83107539-83107558 | Msa0578560:intron | 35.0% |
| GTTTATAGGTGCTTATGAAG+AGG | + | chr4_1:83107976-83107995 | None:intergenic | 35.0% | |
| TCTTAGCAACAAAGAACGAT+GGG | + | chr4_1:83108068-83108087 | None:intergenic | 35.0% | |
| ATCTTAGCAACAAAGAACGA+TGG | + | chr4_1:83108069-83108088 | None:intergenic | 35.0% | |
| ATTGTCATGAAATTTCAGGG+AGG | - | chr4_1:83108087-83108106 | Msa0578560:intron | 35.0% | |
| CTCAAAGAACAAAATTCAGC+TGG | - | chr4_1:83108159-83108178 | Msa0578560:intron | 35.0% | |
| GTAAGGCTTCACTAAAGAAT+TGG | + | chr4_1:83108284-83108303 | None:intergenic | 35.0% | |
| TTAAGATTGTCCATGGAAGA+GGG | + | chr4_1:83108349-83108368 | None:intergenic | 35.0% | |
| ! | TTTAAGATTGTCCATGGAAG+AGG | + | chr4_1:83108350-83108369 | None:intergenic | 35.0% |
| TCCATGGACAATCTTAAAGA+CGG | - | chr4_1:83108352-83108371 | Msa0578560:intron | 35.0% | |
| GCTATTGTGAGCAAGTTATT+TGG | - | chr4_1:83108457-83108476 | Msa0578560:CDS | 35.0% | |
| GTGAGCAAGTTATTTGGTAA+TGG | - | chr4_1:83108463-83108482 | Msa0578560:CDS | 35.0% | |
| TCCTAGGATACTCAAAAACA+AGG | + | chr4_1:83108513-83108532 | None:intergenic | 35.0% | |
| AAATAGACTACTAGAGCATG+TGG | - | chr4_1:83108532-83108551 | Msa0578560:CDS | 35.0% | |
| ! | ATGTGGTTTCAAGTACTTGT+AGG | - | chr4_1:83108549-83108568 | Msa0578560:CDS | 35.0% |
| AAAATGAGATTCAGAGGACA+TGG | + | chr4_1:83108691-83108710 | None:intergenic | 35.0% | |
| !! | CTCTGAATCTCATTTTTCGA+GGG | - | chr4_1:83108695-83108714 | Msa0578560:CDS | 35.0% |
| !!! | TCTGAATCTCATTTTTCGAG+GGG | - | chr4_1:83108696-83108715 | Msa0578560:CDS | 35.0% |
| CATAGGAAAAAGTTACCTAC+AGG | - | chr4_1:83108723-83108742 | Msa0578560:CDS | 35.0% | |
| ! | TTATATTTTGCACACCCTGT+AGG | + | chr4_1:83108741-83108760 | None:intergenic | 35.0% |
| GTTTCAGCTTAGTTGAACAT+TGG | - | chr4_1:83108777-83108796 | Msa0578560:CDS | 35.0% | |
| TGCAGAGTTGAAAATATGCT+GGG | - | chr4_1:83108817-83108836 | Msa0578560:exon | 35.0% | |
| ! | CCTTTTAACAACTGGAGTTA+TGG | + | chr4_1:83108864-83108883 | None:intergenic | 35.0% |
| CCATAACTCCAGTTGTTAAA+AGG | - | chr4_1:83108861-83108880 | Msa0578560:five_prime_UTR | 35.0% | |
| AAGGGTGGATAAGGGTTTAA+GGG | + | chr4_1:83105298-83105317 | None:intergenic | 40.0% | |
| AAAGGGTGGATAAGGGTTTA+AGG | + | chr4_1:83105299-83105318 | None:intergenic | 40.0% | |
| GGAAGAAGAACTTTCTTTGG+AGG | + | chr4_1:83105396-83105415 | None:intergenic | 40.0% | |
| ! | GTAGCTTGTGGAAAAATGCA+GGG | + | chr4_1:83106076-83106095 | None:intergenic | 40.0% |
| GGCTGTTAAGTCGAATATTC+AGG | - | chr4_1:83106106-83106125 | Msa0578560:intron | 40.0% | |
| CAAACATGTAAGCAGTTCCA+GGG | + | chr4_1:83106160-83106179 | None:intergenic | 40.0% | |
| ACTTTGGCTGAACAGCTATT+TGG | - | chr4_1:83106185-83106204 | Msa0578560:intron | 40.0% | |
| CTTTGGCTGAACAGCTATTT+GGG | - | chr4_1:83106186-83106205 | Msa0578560:intron | 40.0% | |
| TTTGGCTGAACAGCTATTTG+GGG | - | chr4_1:83106187-83106206 | Msa0578560:intron | 40.0% | |
| ! | TGTGTTGCTAAATATTCGCG+TGG | - | chr4_1:83106353-83106372 | Msa0578560:intron | 40.0% |
| TTGAACTGGAGAGTTTACGA+AGG | - | chr4_1:83106479-83106498 | Msa0578560:intron | 40.0% | |
| TGAACTGGAGAGTTTACGAA+GGG | - | chr4_1:83106480-83106499 | Msa0578560:intron | 40.0% | |
| !!! | CTTTGAGCTAGCTTTTGGAT+GGG | + | chr4_1:83106755-83106774 | None:intergenic | 40.0% |
| !!! | TCTTTGAGCTAGCTTTTGGA+TGG | + | chr4_1:83106756-83106775 | None:intergenic | 40.0% |
| ATTGGAATCCCACATTGATC+AGG | + | chr4_1:83106821-83106840 | None:intergenic | 40.0% | |
| GAAAATGGTGCGGGAAAAAT+TGG | - | chr4_1:83106899-83106918 | Msa0578560:intron | 40.0% | |
| ! | GAAATCTGGATCCTAGGTTT+TGG | - | chr4_1:83107000-83107019 | Msa0578560:intron | 40.0% |
| CTGTGATATCTGATGCATGT+TGG | - | chr4_1:83107061-83107080 | Msa0578560:intron | 40.0% | |
| TAAGACAGTAACCTACACTG+GGG | + | chr4_1:83107214-83107233 | None:intergenic | 40.0% | |
| GCTTCTGTTGAGAAAACTCT+TGG | - | chr4_1:83107398-83107417 | Msa0578560:intron | 40.0% | |
| TGAGAAAACTCTTGGAGTCT+TGG | - | chr4_1:83107406-83107425 | Msa0578560:intron | 40.0% | |
| TTTGTGTAGAATAGCAGGTG+AGG | + | chr4_1:83108208-83108227 | None:intergenic | 40.0% | |
| ! | CCTTGTTTGTGTAGAATAGC+AGG | + | chr4_1:83108213-83108232 | None:intergenic | 40.0% |
| CCTGCTATTCTACACAAACA+AGG | - | chr4_1:83108210-83108229 | Msa0578560:CDS | 40.0% | |
| !! | TCCGTCTTTAAGATTGTCCA+TGG | + | chr4_1:83108356-83108375 | None:intergenic | 40.0% |
| GATGCCGTAGTAGTTATTGA+TGG | - | chr4_1:83108385-83108404 | Msa0578560:intron | 40.0% | |
| !!! | GCCTTGTTTTTGAGTATCCT+AGG | - | chr4_1:83108509-83108528 | Msa0578560:CDS | 40.0% |
| GCTCTAGTAGTCTATTTCCT+AGG | + | chr4_1:83108529-83108548 | None:intergenic | 40.0% | |
| CCTGAAAACAAATCAGGCTT+GGG | + | chr4_1:83108608-83108627 | None:intergenic | 40.0% | |
| ACCTGAAAACAAATCAGGCT+TGG | + | chr4_1:83108609-83108628 | None:intergenic | 40.0% | |
| !!! | AAGCCTGATTTGTTTTCAGG+TGG | - | chr4_1:83108608-83108627 | Msa0578560:CDS | 40.0% |
| ACACCACCTGAAAACAAATC+AGG | + | chr4_1:83108614-83108633 | None:intergenic | 40.0% | |
| CCTCGAAAAATGAGATTCAG+AGG | + | chr4_1:83108697-83108716 | None:intergenic | 40.0% | |
| !! | CCTCTGAATCTCATTTTTCG+AGG | - | chr4_1:83108694-83108713 | Msa0578560:CDS | 40.0% |
| !!! | CTGAATCTCATTTTTCGAGG+GGG | - | chr4_1:83108697-83108716 | Msa0578560:CDS | 40.0% |
| CTGCAGAGTTGAAAATATGC+TGG | - | chr4_1:83108816-83108835 | Msa0578560:exon | 40.0% | |
| ! | TCTCAGTCCCTTTTAACAAC+TGG | + | chr4_1:83108872-83108891 | None:intergenic | 40.0% |
| CGCAATTCCGGTTAGGATAA+TGG | + | chr4_1:83105173-83105192 | None:intergenic | 45.0% | |
| AAGAAGTAGGAGCAACGACA+TGG | + | chr4_1:83105211-83105230 | None:intergenic | 45.0% | |
| AAGGTTGAGGCAGAAGAAGT+AGG | + | chr4_1:83105224-83105243 | None:intergenic | 45.0% | |
| !! | GAATGGAGAGAGTCTTGTTG+TGG | + | chr4_1:83105253-83105272 | None:intergenic | 45.0% |
| GTGGATAAGGGTTTAAGGGT+GGG | + | chr4_1:83105294-83105313 | None:intergenic | 45.0% | |
| GAAATGGAAAGGGTGGAGTT+TGG | + | chr4_1:83105339-83105358 | None:intergenic | 45.0% | |
| TGGAGAGGTGGAAATGGAAA+GGG | + | chr4_1:83105349-83105368 | None:intergenic | 45.0% | |
| ! | AAGAACTTTCTTTGGAGGGG+AGG | + | chr4_1:83105391-83105410 | None:intergenic | 45.0% |
| ! | AGTTCTTCTTCCCATCGGTT+TGG | - | chr4_1:83105404-83105423 | Msa0578560:three_prime_UTR | 45.0% |
| !! | GTTCTTCTTCCCATCGGTTT+GGG | - | chr4_1:83105405-83105424 | Msa0578560:three_prime_UTR | 45.0% |
| ! | GATAACGGCTTCCATTTCCT+CGG | + | chr4_1:83105433-83105452 | None:intergenic | 45.0% |
| AACTTGAAGCTGAGGCTCAA+CGG | + | chr4_1:83105502-83105521 | None:intergenic | 45.0% | |
| GATCTCATTGCTTTACCTGG+AGG | - | chr4_1:83105588-83105607 | Msa0578560:CDS | 45.0% | |
| ! | TGCTGTTACGCTTTTGCCTT+GGG | - | chr4_1:83105813-83105832 | Msa0578560:CDS | 45.0% |
| TTTCTCTTCAAGAGACCCCA+AGG | + | chr4_1:83105832-83105851 | None:intergenic | 45.0% | |
| GGGTCTCTTGAAGAGAAAGA+AGG | - | chr4_1:83105834-83105853 | Msa0578560:CDS | 45.0% | |
| ! | GGTAGCTTGTGGAAAAATGC+AGG | + | chr4_1:83106077-83106096 | None:intergenic | 45.0% |
| ! | TCCACAAGCTACCAACGTTT+TGG | - | chr4_1:83106084-83106103 | Msa0578560:intron | 45.0% |
| ! | CCACAAGCTACCAACGTTTT+GGG | - | chr4_1:83106085-83106104 | Msa0578560:intron | 45.0% |
| GACTTAACAGCCCAAAACGT+TGG | + | chr4_1:83106098-83106117 | None:intergenic | 45.0% | |
| GCAAACATGTAAGCAGTTCC+AGG | + | chr4_1:83106161-83106180 | None:intergenic | 45.0% | |
| TATTTGGGGAGTCTGTTGCA+AGG | - | chr4_1:83106201-83106220 | Msa0578560:intron | 45.0% | |
| ATTTGGGGAGTCTGTTGCAA+GGG | - | chr4_1:83106202-83106221 | Msa0578560:intron | 45.0% | |
| AAGGGAGGTTGCTGAATTCT+TGG | - | chr4_1:83106220-83106239 | Msa0578560:intron | 45.0% | |
| TTGACTCACCAGCTAGACTA+TGG | + | chr4_1:83106425-83106444 | None:intergenic | 45.0% | |
| TTGTGTTCGAGGGAAATGGA+AGG | - | chr4_1:83106654-83106673 | Msa0578560:CDS | 45.0% | |
| CTTGGGAACCTGATCAATGT+GGG | - | chr4_1:83106810-83106829 | Msa0578560:intron | 45.0% | |
| AAGACAGTAACCTACACTGG+GGG | + | chr4_1:83107213-83107232 | None:intergenic | 45.0% | |
| GTGGCTTCAAACATGAGAGT+TGG | + | chr4_1:83107736-83107755 | None:intergenic | 45.0% | |
| TAGCAACAAAGAACGATGGG+TGG | + | chr4_1:83108065-83108084 | None:intergenic | 45.0% | |
| AAATTTCAGGGAGGAACTGC+TGG | - | chr4_1:83108096-83108115 | Msa0578560:intron | 45.0% | |
| TGGCAAAGTGATCACTTGTG+AGG | - | chr4_1:83108405-83108424 | Msa0578560:intron | 45.0% | |
| GGCAAAGTGATCACTTGTGA+GGG | - | chr4_1:83108406-83108425 | Msa0578560:intron | 45.0% | |
| CAATGCAAACTCCGTTACAG+TGG | + | chr4_1:83108437-83108456 | None:intergenic | 45.0% | |
| ! | CACTGTAACGGAGTTTGCAT+TGG | - | chr4_1:83108435-83108454 | Msa0578560:CDS | 45.0% |
| ! | AGAGCAAGAAGTGTAGCAGA+AGG | - | chr4_1:83108487-83108506 | Msa0578560:CDS | 45.0% |
| AAACAAATCAGGCTTGGGCT+GGG | + | chr4_1:83108603-83108622 | None:intergenic | 45.0% | |
| AAAACAAATCAGGCTTGGGC+TGG | + | chr4_1:83108604-83108623 | None:intergenic | 45.0% | |
| !!! | CCCAAGCCTGATTTGTTTTC+AGG | - | chr4_1:83108605-83108624 | Msa0578560:CDS | 45.0% |
| GATTCAGAGGACATGGTGAT+TGG | + | chr4_1:83108684-83108703 | None:intergenic | 45.0% | |
| !!! | ATTTTTCGAGGGGGTTGCAT+AGG | - | chr4_1:83108706-83108725 | Msa0578560:CDS | 45.0% |
| CTGTTACCACAGCGCAATTC+CGG | + | chr4_1:83105185-83105204 | None:intergenic | 50.0% | |
| !! | TGGAGAGAGTCTTGTTGTGG+CGG | + | chr4_1:83105250-83105269 | None:intergenic | 50.0% |
| GTGGATGTGGAGATGGTGAA+TGG | + | chr4_1:83105270-83105289 | None:intergenic | 50.0% | |
| TTTAAGGGTGGGAGTGGATG+TGG | + | chr4_1:83105283-83105302 | None:intergenic | 50.0% | |
| TAAGGGTTTAAGGGTGGGAG+TGG | + | chr4_1:83105289-83105308 | None:intergenic | 50.0% | |
| GGTGGATAAGGGTTTAAGGG+TGG | + | chr4_1:83105295-83105314 | None:intergenic | 50.0% | |
| GGAGGTGAAAGGGTGGATAA+GGG | + | chr4_1:83105306-83105325 | None:intergenic | 50.0% | |
| TGGAGGTGAAAGGGTGGATA+AGG | + | chr4_1:83105307-83105326 | None:intergenic | 50.0% | |
| AGAGGTGGAAATGGAAAGGG+TGG | + | chr4_1:83105346-83105365 | None:intergenic | 50.0% | |
| GTGGAGAGGTGGAAATGGAA+AGG | + | chr4_1:83105350-83105369 | None:intergenic | 50.0% | |
| !! | GCATTTGTAGGTGTTGGTGG+TGG | + | chr4_1:83105369-83105388 | None:intergenic | 50.0% |
| !! | GAGGCATTTGTAGGTGTTGG+TGG | + | chr4_1:83105372-83105391 | None:intergenic | 50.0% |
| !! | TTTGGAGGGGAGGCATTTGT+AGG | + | chr4_1:83105381-83105400 | None:intergenic | 50.0% |
| GCAGCTTCAACTTGAAGCTG+AGG | + | chr4_1:83105510-83105529 | None:intergenic | 50.0% | |
| !! | CAGCTTCAAGTTGAAGCTGC+TGG | - | chr4_1:83105510-83105529 | Msa0578560:CDS | 50.0% |
| !! | CTTCAAGTTGAAGCTGCTGG+TGG | - | chr4_1:83105513-83105532 | Msa0578560:CDS | 50.0% |
| ! | CAAGGCAAAAGCGTAACAGC+AGG | + | chr4_1:83105814-83105833 | None:intergenic | 50.0% |
| ! | CTGCTGTTACGCTTTTGCCT+TGG | - | chr4_1:83105812-83105831 | Msa0578560:CDS | 50.0% |
| ! | GCTGTTACGCTTTTGCCTTG+GGG | - | chr4_1:83105814-83105833 | Msa0578560:CDS | 50.0% |
| !! | CCCAAAACGTTGGTAGCTTG+TGG | + | chr4_1:83106088-83106107 | None:intergenic | 50.0% |
| ACCAGAAGCCATAGTCTAGC+TGG | - | chr4_1:83106414-83106433 | Msa0578560:intron | 50.0% | |
| ACCAGCTAGACTATGGCTTC+TGG | + | chr4_1:83106418-83106437 | None:intergenic | 50.0% | |
| ACTGGAGAGTTTACGAAGGG+TGG | - | chr4_1:83106483-83106502 | Msa0578560:intron | 50.0% | |
| AGGGAAATGGAAGGCAGGTT+AGG | - | chr4_1:83106663-83106682 | Msa0578560:CDS | 50.0% | |
| GCTTGGGAACCTGATCAATG+TGG | - | chr4_1:83106809-83106828 | Msa0578560:intron | 50.0% | |
| AGACAGTAACCTACACTGGG+GGG | + | chr4_1:83107212-83107231 | None:intergenic | 50.0% | |
| TTGTCCATGCTTCTGCAACG+AGG | - | chr4_1:83107258-83107277 | Msa0578560:intron | 50.0% | |
| AGATCCTCGTTGCAGAAGCA+TGG | + | chr4_1:83107265-83107284 | None:intergenic | 50.0% | |
| CTTCAGAACCATGCGCGATT+GGG | + | chr4_1:83107319-83107338 | None:intergenic | 50.0% | |
| TCTTCAGAACCATGCGCGAT+TGG | + | chr4_1:83107320-83107339 | None:intergenic | 50.0% | |
| CTTGGAGTCTTGGCTTCTCA+AGG | - | chr4_1:83107416-83107435 | Msa0578560:intron | 50.0% | |
| CAAGCTGCTGCATTTCTGTG+TGG | - | chr4_1:83107643-83107662 | Msa0578560:intron | 50.0% | |
| AATAGCAGGTGAGGAGCAGA+CGG | + | chr4_1:83108199-83108218 | None:intergenic | 50.0% | |
| TACAGCTCATCCCTCTTCCA+TGG | - | chr4_1:83108336-83108355 | Msa0578560:intron | 50.0% | |
| TGAGGGACTTGCCACTGTAA+CGG | - | chr4_1:83108423-83108442 | Msa0578560:intron | 50.0% | |
| AACAAATCAGGCTTGGGCTG+GGG | + | chr4_1:83108602-83108621 | None:intergenic | 50.0% | |
| TCCTAACCGGAATTGCGCTG+TGG | - | chr4_1:83105176-83105195 | Msa0578560:three_prime_UTR | 55.0% | |
| ACCACAGCGCAATTCCGGTT+AGG | + | chr4_1:83105180-83105199 | None:intergenic | 55.0% | |
| !! | AGTCTTGTTGTGGCGGTGGA+AGG | + | chr4_1:83105243-83105262 | None:intergenic | 55.0% |
| !! | AGAGAGTCTTGTTGTGGCGG+TGG | + | chr4_1:83105247-83105266 | None:intergenic | 55.0% |
| AGTGGAGCGTGGAGGTGAAA+GGG | + | chr4_1:83105316-83105335 | None:intergenic | 55.0% | |
| GGAAAGGGTGGAGTTTGGAG+TGG | + | chr4_1:83105334-83105353 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGAGAGGTGGAAA+TGG | + | chr4_1:83105355-83105374 | None:intergenic | 55.0% |
| !! | TGTAGGTGTTGGTGGTGGAG+AGG | + | chr4_1:83105364-83105383 | None:intergenic | 55.0% |
| !! | GGGGAGGCATTTGTAGGTGT+TGG | + | chr4_1:83105375-83105394 | None:intergenic | 55.0% |
| AGCTACGGTGACATGAGCAC+CGG | + | chr4_1:83105478-83105497 | None:intergenic | 55.0% | |
| CTGAGGCTCAACGGAAGCTA+CGG | + | chr4_1:83105493-83105512 | None:intergenic | 55.0% | |
| AAAGGGCTTACAACGAGCCG+TGG | - | chr4_1:83106134-83106153 | Msa0578560:intron | 55.0% | |
| TGTAAGCAGTTCCAGGGCCA+CGG | + | chr4_1:83106154-83106173 | None:intergenic | 55.0% | |
| GTTCGAGGGAAATGGAAGGC+AGG | - | chr4_1:83106658-83106677 | Msa0578560:CDS | 55.0% | |
| AGTAACCTACACTGGGGGGA+TGG | + | chr4_1:83107208-83107227 | None:intergenic | 55.0% | |
| GTTCTCATCCCAATCGCGCA+TGG | - | chr4_1:83107308-83107327 | Msa0578560:intron | 55.0% | |
| GTTGTGGCGGTGGAAGGTTG+AGG | + | chr4_1:83105237-83105256 | None:intergenic | 60.0% | |
| GGTGGGAGTGGATGTGGAGA+TGG | + | chr4_1:83105277-83105296 | None:intergenic | 60.0% | |
| GAGTGGAGCGTGGAGGTGAA+AGG | + | chr4_1:83105317-83105336 | None:intergenic | 60.0% | |
| ! | GAGTTTGGAGTGGAGCGTGG+AGG | + | chr4_1:83105324-83105343 | None:intergenic | 60.0% |
| ! | GTGGAGTTTGGAGTGGAGCG+TGG | + | chr4_1:83105327-83105346 | None:intergenic | 60.0% |
| !! | AGGTGTTGGTGGTGGAGAGG+TGG | + | chr4_1:83105361-83105380 | None:intergenic | 60.0% |
| !! | TCCTCGGTGCCCAAACCGAT+GGG | + | chr4_1:83105417-83105436 | None:intergenic | 60.0% |
| !! | TTCCTCGGTGCCCAAACCGA+TGG | + | chr4_1:83105418-83105437 | None:intergenic | 60.0% |
| !! | CGGTTTGGGCACCGAGGAAA+TGG | - | chr4_1:83105419-83105438 | Msa0578560:three_prime_UTR | 60.0% |
| ATCCACGTCCTTCGTCGTGC+CGG | - | chr4_1:83105456-83105475 | Msa0578560:three_prime_UTR | 60.0% | |
| TGGGGAGTCTGTTGCAAGGG+AGG | - | chr4_1:83106205-83106224 | Msa0578560:intron | 60.0% | |
| AACCTACACTGGGGGGATGG+TGG | + | chr4_1:83107205-83107224 | None:intergenic | 60.0% | |
| GCGCGATTGGGATGAGAACC+TGG | + | chr4_1:83107307-83107326 | None:intergenic | 60.0% | |
| GAGGAACTGCTGGCGCTCAA+AGG | - | chr4_1:83108106-83108125 | Msa0578560:intron | 60.0% | |
| GGAGCGTGGAGGTGAAAGGG+TGG | + | chr4_1:83105313-83105332 | None:intergenic | 65.0% | |
| !! | TCCCATCGGTTTGGGCACCG+AGG | - | chr4_1:83105413-83105432 | Msa0578560:three_prime_UTR | 65.0% |
| !! | CATGAGCACCGGCACGACGA+AGG | + | chr4_1:83105467-83105486 | None:intergenic | 65.0% |
| CTTACAACGAGCCGTGGCCC+TGG | - | chr4_1:83106140-83106159 | Msa0578560:intron | 65.0% | |
| CACCGGCACGACGAAGGACG+TGG | + | chr4_1:83105461-83105480 | None:intergenic | 70.0% | |
| GGCCACCATCCCCCCAGTGT+AGG | - | chr4_1:83107200-83107219 | Msa0578560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83105121 | 83108919 | 83105121 | ID=Msa0578560;Name=Msa0578560 |
| chr4_1 | mRNA | 83105121 | 83108919 | 83105121 | ID=Msa0578560-mRNA-1;Parent=Msa0578560;Name=Msa0578560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|0.66|0.57|1|1|1|7|382|416 |
| chr4_1 | exon | 83105121 | 83105715 | 83105121 | ID=Msa0578560-mRNA-1:exon:30292;Parent=Msa0578560-mRNA-1 |
| chr4_1 | exon | 83105798 | 83105935 | 83105798 | ID=Msa0578560-mRNA-1:exon:30291;Parent=Msa0578560-mRNA-1 |
| chr4_1 | exon | 83106532 | 83106732 | 83106532 | ID=Msa0578560-mRNA-1:exon:30290;Parent=Msa0578560-mRNA-1 |
| chr4_1 | exon | 83106823 | 83106903 | 83106823 | ID=Msa0578560-mRNA-1:exon:30289;Parent=Msa0578560-mRNA-1 |
| chr4_1 | exon | 83107799 | 83107912 | 83107799 | ID=Msa0578560-mRNA-1:exon:30288;Parent=Msa0578560-mRNA-1 |
| chr4_1 | exon | 83108185 | 83108284 | 83108185 | ID=Msa0578560-mRNA-1:exon:30287;Parent=Msa0578560-mRNA-1 |
| chr4_1 | exon | 83108427 | 83108919 | 83108427 | ID=Msa0578560-mRNA-1:exon:30286;Parent=Msa0578560-mRNA-1 |
| chr4_1 | five_prime_UTR | 83108831 | 83108919 | 83108831 | ID=Msa0578560-mRNA-1:five_prime_utr;Parent=Msa0578560-mRNA-1 |
| chr4_1 | CDS | 83108427 | 83108830 | 83108427 | ID=Msa0578560-mRNA-1:cds;Parent=Msa0578560-mRNA-1 |
| chr4_1 | CDS | 83108185 | 83108284 | 83108185 | ID=Msa0578560-mRNA-1:cds;Parent=Msa0578560-mRNA-1 |
| chr4_1 | CDS | 83107799 | 83107912 | 83107799 | ID=Msa0578560-mRNA-1:cds;Parent=Msa0578560-mRNA-1 |
| chr4_1 | CDS | 83106823 | 83106903 | 83106823 | ID=Msa0578560-mRNA-1:cds;Parent=Msa0578560-mRNA-1 |
| chr4_1 | CDS | 83106532 | 83106732 | 83106532 | ID=Msa0578560-mRNA-1:cds;Parent=Msa0578560-mRNA-1 |
| chr4_1 | CDS | 83105798 | 83105935 | 83105798 | ID=Msa0578560-mRNA-1:cds;Parent=Msa0578560-mRNA-1 |
| chr4_1 | CDS | 83105503 | 83105715 | 83105503 | ID=Msa0578560-mRNA-1:cds;Parent=Msa0578560-mRNA-1 |
| chr4_1 | three_prime_UTR | 83105121 | 83105502 | 83105121 | ID=Msa0578560-mRNA-1:three_prime_utr;Parent=Msa0578560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
