Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651630 | XP_003607957.1 | 89.823 | 452 | 23 | 2 | 1 | 430 | 1 | 451 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651630 | sp|Q8VY09|DJ1C_ARATH | 58.481 | 395 | 140 | 3 | 59 | 430 | 79 | 472 | 7.95e-164 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0109380 | Msa0651630 | 0.834555 | 2.801356e-56 | -8.615850e-47 |
| Msa0619960 | Msa0651630 | 0.800454 | 1.430462e-48 | -8.615850e-47 |
| Msa0620050 | Msa0651630 | 0.816834 | 4.508363e-52 | -8.615850e-47 |
| Msa0624700 | Msa0651630 | 0.800553 | 1.365321e-48 | -8.615850e-47 |
| Msa0645040 | Msa0651630 | 0.806846 | 6.747450e-50 | -8.615850e-47 |
| Msa0651630 | Msa0705250 | 0.830375 | 3.042965e-55 | -8.615850e-47 |
| Msa0651630 | Msa1074730 | 0.806177 | 9.334585e-50 | -8.615850e-47 |
| Msa0651630 | Msa1110350 | 0.806179 | 9.326039e-50 | -8.615850e-47 |
| Msa0651630 | Msa1131300 | 0.806451 | 8.175305e-50 | -8.615850e-47 |
| Msa0651630 | Msa1154020 | 0.808184 | 3.508876e-50 | -8.615850e-47 |
| Msa0651630 | Msa1208630 | 0.811581 | 6.516419e-51 | -8.615850e-47 |
| Msa0651630 | Msa1267560 | 0.816278 | 6.004392e-52 | -8.615850e-47 |
| Msa0651630 | Msa1391430 | 0.830001 | 3.754267e-55 | -8.615850e-47 |
| Msa0651630 | Msa1398740 | 0.816991 | 4.156103e-52 | -8.615850e-47 |
| Msa0651630 | Msa1400830 | 0.805628 | 1.217674e-49 | -8.615850e-47 |
| Msa0651630 | Msa1411690 | 0.805147 | 1.536383e-49 | -8.615850e-47 |
| Msa0651630 | Msa1455560 | 0.816812 | 4.559911e-52 | -8.615850e-47 |
| Msa0651630 | Msa1456390 | 0.810448 | 1.147177e-50 | -8.615850e-47 |
| Msa0241940 | Msa0651630 | 0.815462 | 9.132167e-52 | -8.615850e-47 |
| Msa0515730 | Msa0651630 | 0.802755 | 4.826485e-49 | -8.615850e-47 |
| Msa0519100 | Msa0651630 | 0.806208 | 9.198775e-50 | -8.615850e-47 |
| Msa0578560 | Msa0651630 | 0.950978 | 5.362517e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651630 | MtrunA17_Chr4g0044761 | 89.823 | 452 | 23 | 2 | 1 | 430 | 1 | 451 | 0.0 | 767 |
| Msa0651630 | MtrunA17_Chr2g0316281 | 44.851 | 437 | 213 | 5 | 17 | 428 | 7 | 440 | 1.72e-103 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651630 | AT4G34020.1 | 58.481 | 395 | 140 | 3 | 59 | 430 | 79 | 472 | 8.08e-165 | 472 |
| Msa0651630 | AT4G34020.2 | 56.704 | 358 | 131 | 3 | 96 | 430 | 81 | 437 | 1.04e-143 | 417 |
| Msa0651630 | AT4G34020.2 | 36.111 | 180 | 91 | 2 | 65 | 221 | 253 | 431 | 5.01e-25 | 107 |
| Msa0651630 | AT4G34020.3 | 57.053 | 319 | 113 | 3 | 135 | 430 | 1 | 318 | 1.01e-125 | 367 |
| Msa0651630 | AT4G34020.3 | 36.111 | 180 | 91 | 2 | 65 | 221 | 134 | 312 | 1.20e-25 | 106 |
| Msa0651630 | AT4G34020.4 | 57.053 | 319 | 113 | 3 | 135 | 430 | 1 | 318 | 1.01e-125 | 367 |
| Msa0651630 | AT4G34020.4 | 36.111 | 180 | 91 | 2 | 65 | 221 | 134 | 312 | 1.20e-25 | 106 |
| Msa0651630 | AT1G53280.1 | 44.872 | 390 | 185 | 5 | 48 | 412 | 41 | 425 | 1.43e-101 | 310 |
| Msa0651630 | AT1G53280.1 | 42.714 | 199 | 111 | 3 | 229 | 425 | 37 | 234 | 1.56e-41 | 152 |
| Msa0651630 | AT3G14990.1 | 45.431 | 383 | 182 | 4 | 60 | 416 | 2 | 383 | 9.83e-96 | 293 |
| Msa0651630 | AT3G14990.1 | 43.956 | 182 | 99 | 2 | 247 | 425 | 7 | 188 | 4.82e-41 | 150 |
| Msa0651630 | AT3G14990.1 | 35.000 | 220 | 111 | 3 | 25 | 222 | 183 | 392 | 1.72e-24 | 104 |
| Msa0651630 | AT3G14990.3 | 44.598 | 361 | 173 | 4 | 82 | 416 | 1 | 360 | 7.06e-88 | 272 |
| Msa0651630 | AT3G14990.3 | 41.818 | 165 | 93 | 2 | 264 | 425 | 1 | 165 | 5.27e-33 | 128 |
| Msa0651630 | AT3G14990.3 | 35.000 | 220 | 111 | 3 | 25 | 222 | 160 | 369 | 9.28e-25 | 105 |
| Msa0651630 | AT3G14990.2 | 44.598 | 361 | 173 | 4 | 82 | 416 | 1 | 360 | 7.06e-88 | 272 |
| Msa0651630 | AT3G14990.2 | 41.818 | 165 | 93 | 2 | 264 | 425 | 1 | 165 | 5.27e-33 | 128 |
| Msa0651630 | AT3G14990.2 | 35.000 | 220 | 111 | 3 | 25 | 222 | 160 | 369 | 9.28e-25 | 105 |
| Msa0651630 | AT1G53280.2 | 44.675 | 338 | 157 | 5 | 48 | 360 | 41 | 373 | 1.47e-86 | 269 |
| Msa0651630 | AT1G53280.2 | 42.714 | 199 | 111 | 3 | 229 | 425 | 37 | 234 | 5.09e-42 | 152 |
Find 142 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGGCTGAACAGCTATT+TGG | 0.148501 | 4_3:+59093426 | Msa0651630:CDS |
| GCTGAGGAAAATAGGTTATT+TGG | 0.191615 | 4_3:+59093013 | Msa0651630:CDS |
| TAATTTATCAGCAACAATTT+TGG | 0.218461 | 4_3:-59094682 | None:intergenic |
| CCATAACTCCAGTTGTTAAA+AGG | 0.218517 | 4_3:+59096104 | Msa0651630:three_prime_UTR |
| TAATCAAAACAATGCATTAA+AGG | 0.219818 | 4_3:-59095888 | None:intergenic |
| CGCAATTCCGGTTAGGATAA+TGG | 0.246932 | 4_3:-59092511 | None:intergenic |
| CTTTGGCTGAACAGCTATTT+GGG | 0.251896 | 4_3:+59093427 | Msa0651630:CDS |
| GCTATTGTGAGCAAGTTATT+TGG | 0.265797 | 4_3:+59095698 | Msa0651630:CDS |
| GTAAACAAGCTGAGGAAAAT+AGG | 0.293312 | 4_3:+59093005 | Msa0651630:CDS |
| ATGGGAAGAAGAACTTTCTT+TGG | 0.297915 | 4_3:-59092737 | None:intergenic |
| AAGGGAGGTTGCTGAATTCT+TGG | 0.306017 | 4_3:+59093461 | Msa0651630:CDS |
| TTACATGTTTGCTTTAACTT+TGG | 0.307717 | 4_3:+59093410 | Msa0651630:CDS |
| GTTCTTCTTCCCATCGGTTT+CGG | 0.331100 | 4_3:+59092746 | Msa0651630:CDS |
| AATCAAAACAATGCATTAAA+GGG | 0.334199 | 4_3:-59095887 | None:intergenic |
| CTGTTACCACAGCGCAATTC+CGG | 0.342867 | 4_3:-59092523 | None:intergenic |
| AGGTGTGATAGAAAATTTAT+AGG | 0.356919 | 4_3:+59095810 | Msa0651630:three_prime_UTR |
| CGGTTTCGGCACCGAGGAAA+TGG | 0.360850 | 4_3:+59092760 | Msa0651630:CDS |
| TCGAATATTCAGGTTTCAAA+AGG | 0.362449 | 4_3:+59093357 | Msa0651630:intron |
| AATTCAGCTGGAAGAATATA+CGG | 0.369869 | 4_3:+59095412 | Msa0651630:CDS |
| GAAATGGAAAGGGTGGAGTT+TGG | 0.379952 | 4_3:-59092677 | None:intergenic |
| TTTAAGATTGTCCATGGAAG+AGG | 0.381844 | 4_3:-59095588 | None:intergenic |
| TGGAGGTGAAAGGGTGGGTG+AGG | 0.391211 | 4_3:-59092645 | None:intergenic |
| TGAGAAAACTCTTGGAGTCT+TGG | 0.397662 | 4_3:+59094647 | Msa0651630:CDS |
| AAAACAAATCAGGCTTGGGC+TGG | 0.402388 | 4_3:-59095842 | None:intergenic |
| AGGAGTTCAATGAAATTGAT+TGG | 0.403621 | 4_3:+59094412 | Msa0651630:CDS |
| ATGTGGTTTCAAGTACTTGT+AGG | 0.413572 | 4_3:+59095790 | Msa0651630:three_prime_UTR |
| GTGGAGGTGGGGATGGTGAA+TGG | 0.413705 | 4_3:-59092608 | None:intergenic |
| GCTTTACCTGGAGGAATGCC+TGG | 0.415338 | 4_3:+59092938 | Msa0651630:CDS |
| ACACCACCTGAAAACAAATC+AGG | 0.421102 | 4_3:-59095852 | None:intergenic |
| TCTTCAGAACCATGCGCGAT+TGG | 0.430665 | 4_3:-59094558 | None:intergenic |
| TGACACTGATAGATATTCTA+AGG | 0.431244 | 4_3:+59094592 | Msa0651630:CDS |
| GCAAACATGTAAGCAGTTCC+AGG | 0.433638 | 4_3:-59093399 | None:intergenic |
| TTTAGGGTGAGAGTGGAGGT+GGG | 0.434902 | 4_3:-59092620 | None:intergenic |
| GCTTCTGTTGAGAAAACTCT+TGG | 0.435054 | 4_3:+59094639 | Msa0651630:CDS |
| ACCTGAAAACAAATCAGGCT+TGG | 0.437458 | 4_3:-59095847 | None:intergenic |
| CATAACTCCAGTTGTTAAAA+GGG | 0.438753 | 4_3:+59096105 | Msa0651630:three_prime_UTR |
| TTTGATCTCATTGCTTTACC+TGG | 0.440793 | 4_3:+59092926 | Msa0651630:CDS |
| GTGAGCAAGTTATTTGGTAA+TGG | 0.442489 | 4_3:+59095704 | Msa0651630:CDS |
| CTTCAGAACCATGCGCGATT+GGG | 0.443538 | 4_3:-59094557 | None:intergenic |
| ACATGATTTGATTATTCTCC+CGG | 0.445948 | 4_3:+59094728 | Msa0651630:CDS |
| GGTGAGAGTGGAGGTGGGGA+TGG | 0.456834 | 4_3:-59092615 | None:intergenic |
| AAGAAAACCATTATCCTAAC+CGG | 0.458652 | 4_3:+59092504 | Msa0651630:five_prime_UTR |
| CTCAAAGAACAAAATTCAGC+TGG | 0.460880 | 4_3:+59095400 | Msa0651630:CDS |
| AAACAAATCAGGCTTGGGCT+GGG | 0.463419 | 4_3:-59095841 | None:intergenic |
| CCTTGTTTGTGTAGAATAGC+AGG | 0.466355 | 4_3:-59095451 | None:intergenic |
| CTTACAACAAGCCGTGGCCC+TGG | 0.466506 | 4_3:+59093381 | Msa0651630:CDS |
| CAGCTTCAAGTTGAAGCTGC+TGG | 0.470478 | 4_3:+59092851 | Msa0651630:CDS |
| AAATTTCAGGGAGGAACTGC+TGG | 0.472046 | 4_3:+59095337 | Msa0651630:intron |
| CACTGTAACGGAGTTTGCAT+TGG | 0.475926 | 4_3:+59095676 | Msa0651630:CDS |
| CTGCAGAGTTGAAAATATGC+TGG | 0.476502 | 4_3:+59096059 | Msa0651630:three_prime_UTR |
| GAGTGGAGCGTGGAGGTGAA+AGG | 0.477114 | 4_3:-59092655 | None:intergenic |
| ATCCACGTCCTTCGTCGTGC+CGG | 0.478410 | 4_3:+59092797 | Msa0651630:CDS |
| GGAAGAAGAACTTTCTTTGG+AGG | 0.479670 | 4_3:-59092734 | None:intergenic |
| AATGAAATTGATTGGTCTGT+TGG | 0.480796 | 4_3:+59094420 | Msa0651630:CDS |
| GTGGAGTTTGGAGTGGAGCG+TGG | 0.481874 | 4_3:-59092665 | None:intergenic |
| TTAGGGTGAGAGTGGAGGTG+GGG | 0.485692 | 4_3:-59092619 | None:intergenic |
| GATTCAGAGGACATGGTGAT+TGG | 0.485961 | 4_3:-59095922 | None:intergenic |
| CCTGAAAACAAATCAGGCTT+GGG | 0.487349 | 4_3:-59095846 | None:intergenic |
| CGAATATTCAGGTTTCAAAA+GGG | 0.492167 | 4_3:+59093358 | Msa0651630:intron |
| ATCAAAACAATGCATTAAAG+GGG | 0.494622 | 4_3:-59095886 | None:intergenic |
| GATGCCGTAGTAGTTATTGA+TGG | 0.498779 | 4_3:+59095626 | Msa0651630:CDS |
| AGTGGAGCGTGGAGGTGAAA+GGG | 0.500650 | 4_3:-59092654 | None:intergenic |
| TGGGGAGTCTGTTGCAAGGG+AGG | 0.503756 | 4_3:+59093446 | Msa0651630:CDS |
| TGGTGGTGGAGAGATGGAAA+TGG | 0.504025 | 4_3:-59092693 | None:intergenic |
| GGAGCGTGGAGGTGAAAGGG+TGG | 0.504772 | 4_3:-59092651 | None:intergenic |
| ACCACAGCGCAATTCCGGTT+AGG | 0.507296 | 4_3:-59092518 | None:intergenic |
| CTTGGAGTCTTGGCTTCTCA+AGG | 0.507724 | 4_3:+59094657 | Msa0651630:CDS |
| ACACAAACAAGGTTTACTAA+AGG | 0.507836 | 4_3:+59095462 | Msa0651630:CDS |
| TCCTCGGTGCCGAAACCGAT+GGG | 0.516608 | 4_3:-59092755 | None:intergenic |
| GCTCTAGTAGTCTATTTCCT+AGG | 0.517668 | 4_3:-59095767 | None:intergenic |
| GTTTCAGCTTAGTTGAACAT+TGG | 0.518754 | 4_3:+59096020 | Msa0651630:three_prime_UTR |
| TCTCTCAATCTTGCTGAACC+AGG | 0.519163 | 4_3:-59092956 | None:intergenic |
| GAGGCATTCGTAGGTGTTGG+TGG | 0.522077 | 4_3:-59092710 | None:intergenic |
| CACCGGCACGACGAAGGACG+TGG | 0.522820 | 4_3:-59092799 | None:intergenic |
| AACAAATCAGGCTTGGGCTG+GGG | 0.522982 | 4_3:-59095840 | None:intergenic |
| GGGGAGGCATTCGTAGGTGT+TGG | 0.530031 | 4_3:-59092713 | None:intergenic |
| AATAGCAGGTGAGGAGCAGA+CGG | 0.534057 | 4_3:-59095437 | None:intergenic |
| CAAGGCAAAAGCGTAACAGC+AGG | 0.534810 | 4_3:-59093052 | None:intergenic |
| GGAGGTGAAAGGGTGGGTGA+GGG | 0.535310 | 4_3:-59092644 | None:intergenic |
| CTGAGGCTCAACGGAAGCTA+CGG | 0.539984 | 4_3:-59092831 | None:intergenic |
| GCTGAACCAGGCATTCCTCC+AGG | 0.543196 | 4_3:-59092944 | None:intergenic |
| GATAACGGCTTCCATTTCCT+CGG | 0.545948 | 4_3:-59092771 | None:intergenic |
| AAGAACTTTCTTTGGAGGGG+AGG | 0.546701 | 4_3:-59092729 | None:intergenic |
| AGGTGTTGGTGGTGGAGAGA+TGG | 0.547390 | 4_3:-59092699 | None:intergenic |
| AGAGATGGAAATGGAAAGGG+TGG | 0.547634 | 4_3:-59092684 | None:intergenic |
| TGGAGAGATGGAAATGGAAA+GGG | 0.548727 | 4_3:-59092687 | None:intergenic |
| TGTAAGCAGTTCCAGGGCCA+CGG | 0.552580 | 4_3:-59093392 | None:intergenic |
| AACTTGAAGCTGAGGCTCAA+CGG | 0.557365 | 4_3:-59092840 | None:intergenic |
| AGTCTTGTTGTGGCGGTGGA+AGG | 0.558922 | 4_3:-59092581 | None:intergenic |
| GAGGAACTGCTGGCGCTCAA+AGG | 0.560324 | 4_3:+59095347 | Msa0651630:CDS |
| GCATTCGTAGGTGTTGGTGG+TGG | 0.560655 | 4_3:-59092707 | None:intergenic |
| TTCCTCGGTGCCGAAACCGA+TGG | 0.562069 | 4_3:-59092756 | None:intergenic |
| AAGAAAGTTCTTCTTCCCAT+CGG | 0.562766 | 4_3:+59092740 | Msa0651630:CDS |
| GGGTCTCTTGAAGAGAAAGA+AGG | 0.562932 | 4_3:+59093075 | Msa0651630:CDS |
| TTTGGAGGGGAGGCATTCGT+AGG | 0.566350 | 4_3:-59092719 | None:intergenic |
| TGATGATAATGTATCTAAGA+AGG | 0.567147 | 4_3:+59094392 | Msa0651630:CDS |
| TGCAGAGTTGAAAATATGCT+GGG | 0.567483 | 4_3:+59096060 | Msa0651630:three_prime_UTR |
| AGAGAGTCTTGTTGTGGCGG+TGG | 0.569839 | 4_3:-59092585 | None:intergenic |
| TTTCTCTTCAAGAGACCCCA+AGG | 0.572489 | 4_3:-59093070 | None:intergenic |
| AAGGTTGAGGCAGAAGAAGT+AGG | 0.575689 | 4_3:-59092562 | None:intergenic |
| GAAGAAGAACTTTCTTTGGA+GGG | 0.579982 | 4_3:-59092733 | None:intergenic |
| GTGGAGAGATGGAAATGGAA+AGG | 0.582911 | 4_3:-59092688 | None:intergenic |
| CCTGCTATTCTACACAAACA+AGG | 0.583795 | 4_3:+59095451 | Msa0651630:CDS |
| TTTGCCATCAATAACTACTA+CGG | 0.585134 | 4_3:-59095630 | None:intergenic |
| TTAAGATTGTCCATGGAAGA+GGG | 0.586260 | 4_3:-59095587 | None:intergenic |
| GGAAAGGGTGGAGTTTGGAG+TGG | 0.586763 | 4_3:-59092672 | None:intergenic |
| AAGGACGTGGATTAAGATAA+CGG | 0.587327 | 4_3:-59092786 | None:intergenic |
| ATTTGGGGAGTCTGTTGCAA+GGG | 0.590925 | 4_3:+59093443 | Msa0651630:CDS |
| TTTGGCTGAACAGCTATTTG+GGG | 0.595171 | 4_3:+59093428 | Msa0651630:CDS |
| TGAGGGACTTGCCACTGTAA+CGG | 0.595366 | 4_3:+59095664 | Msa0651630:CDS |
| GAGCGTGGAGGTGAAAGGGT+GGG | 0.595390 | 4_3:-59092650 | None:intergenic |
| GTTCTCATCCCAATCGCGCA+TGG | 0.596389 | 4_3:+59094549 | Msa0651630:CDS |
| AAAATGAGATTCAGAGGACA+TGG | 0.596528 | 4_3:-59095929 | None:intergenic |
| TACAGCTCATCCCTCTTCCA+TGG | 0.598748 | 4_3:+59095577 | Msa0651630:CDS |
| GATCTCATTGCTTTACCTGG+AGG | 0.601166 | 4_3:+59092929 | Msa0651630:CDS |
| TCCGTCTTTAAGATTGTCCA+TGG | 0.601178 | 4_3:-59095594 | None:intergenic |
| GCAGCTTCAACTTGAAGCTG+AGG | 0.605203 | 4_3:-59092848 | None:intergenic |
| AAGAAGAACTTTCTTTGGAG+GGG | 0.605923 | 4_3:-59092732 | None:intergenic |
| TATTTGGGGAGTCTGTTGCA+AGG | 0.607338 | 4_3:+59093442 | Msa0651630:CDS |
| AAGAAGTAGGAGCAACGACA+TGG | 0.611487 | 4_3:-59092549 | None:intergenic |
| GTTGTGGCGGTGGAAGGTTG+AGG | 0.612790 | 4_3:-59092575 | None:intergenic |
| AGAGCAAGAAGTGTAGCAGA+AGG | 0.616554 | 4_3:+59095728 | Msa0651630:CDS |
| TCCATGGACAATCTTAAAGA+CGG | 0.618927 | 4_3:+59095593 | Msa0651630:CDS |
| AATCACATGTAAACAAGCTG+AGG | 0.624888 | 4_3:+59092997 | Msa0651630:CDS |
| AGCTACGGTGACATGAGCAC+CGG | 0.629319 | 4_3:-59092816 | None:intergenic |
| CATGAGCACCGGCACGACGA+AGG | 0.630227 | 4_3:-59092805 | None:intergenic |
| CTTCAAGTTGAAGCTGCTGG+TGG | 0.632239 | 4_3:+59092854 | Msa0651630:CDS |
| AAATAGACTACTAGAGCATG+TGG | 0.634408 | 4_3:+59095773 | Msa0651630:exon |
| AAAGGGCTTACAACAAGCCG+TGG | 0.636764 | 4_3:+59093375 | Msa0651630:CDS |
| GGCAAAGTGATCACTTGTGA+GGG | 0.639904 | 4_3:+59095647 | Msa0651630:CDS |
| GAGTTTGGAGTGGAGCGTGG+AGG | 0.641201 | 4_3:-59092662 | None:intergenic |
| CAAACATGTAAGCAGTTCCA+GGG | 0.641827 | 4_3:-59093398 | None:intergenic |
| TTTGTGTAGAATAGCAGGTG+AGG | 0.652165 | 4_3:-59095446 | None:intergenic |
| GAATGGAGAGAGTCTTGTTG+TGG | 0.655286 | 4_3:-59092591 | None:intergenic |
| TGGAGAGAGTCTTGTTGTGG+CGG | 0.659112 | 4_3:-59092588 | None:intergenic |
| CAATGCAAACTCCGTTACAG+TGG | 0.660685 | 4_3:-59095675 | None:intergenic |
| AAGACAGTAACCTACACTGG+GGG | 0.666507 | 4_3:-59094451 | None:intergenic |
| TCAAAACAATGCATTAAAGG+GGG | 0.667560 | 4_3:-59095885 | None:intergenic |
| TCCTAACCGGAATTGCGCTG+TGG | 0.673964 | 4_3:+59092517 | Msa0651630:five_prime_UTR |
| TCCCATCGGTTTCGGCACCG+AGG | 0.680821 | 4_3:+59092754 | Msa0651630:CDS |
| TGGCAAAGTGATCACTTGTG+AGG | 0.698032 | 4_3:+59095646 | Msa0651630:CDS |
| AGACAGTAACCTACACTGGG+GGG | 0.717258 | 4_3:-59094450 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTCTATATTATTTATTTTTA+AGG | - | chr4_3:59095052-59095071 | None:intergenic | 10.0% |
| !!! | TTTACTTTAGTTTTAGATAT+TGG | + | chr4_3:59093101-59093120 | Msa0651630:intron | 15.0% |
| !!! | CATGTTTTTCTTTTTTATTT+TGG | + | chr4_3:59093240-59093259 | Msa0651630:intron | 15.0% |
| !!! | TTCTTTTTTATTTTGGTATT+TGG | + | chr4_3:59093247-59093266 | Msa0651630:intron | 15.0% |
| !! | AAATGTTATTAAAAGTAAAC+AGG | - | chr4_3:59093808-59093827 | None:intergenic | 15.0% |
| !! | ATTTCAAAAAACAATGAAAA+CGG | + | chr4_3:59093935-59093954 | Msa0651630:intron | 15.0% |
| !! | TAAATAATATAGAGCATATA+TGG | + | chr4_3:59095058-59095077 | Msa0651630:intron | 15.0% |
| !! | ACCTATAAACTTATATTTAT+GGG | + | chr4_3:59095227-59095246 | Msa0651630:intron | 15.0% |
| !!! | ATTTTATGCATTTTTGCTAT+AGG | + | chr4_3:59093506-59093525 | Msa0651630:intron | 20.0% |
| !!! | TTTTATGCATTTTTGCTATA+GGG | + | chr4_3:59093507-59093526 | Msa0651630:intron | 20.0% |
| !!! | ATCTGTTCATTTTAAATTAG+TGG | + | chr4_3:59093841-59093860 | Msa0651630:intron | 20.0% |
| !!! | TTGATATTTTCACTGTTAAA+TGG | + | chr4_3:59093962-59093981 | Msa0651630:intron | 20.0% |
| !!! | TGATATTTTCACTGTTAAAT+GGG | + | chr4_3:59093963-59093982 | Msa0651630:intron | 20.0% |
| !! | ATCTTCAATGTTCAAAATTT+AGG | + | chr4_3:59094084-59094103 | Msa0651630:intron | 20.0% |
| !!! | TAATTTATCAGCAACAATTT+TGG | - | chr4_3:59094685-59094704 | None:intergenic | 20.0% |
| !!! | TTTTCATGAATTCATATTAC+CGG | - | chr4_3:59094750-59094769 | None:intergenic | 20.0% |
| !! | CACCTATAAACTTATATTTA+TGG | + | chr4_3:59095226-59095245 | Msa0651630:intron | 20.0% |
| !! | CCTATAAACTTATATTTATG+GGG | + | chr4_3:59095228-59095247 | Msa0651630:intron | 20.0% |
| !! | AATCAAAACAATGCATTAAA+GGG | - | chr4_3:59095890-59095909 | None:intergenic | 20.0% |
| !! | TAATCAAAACAATGCATTAA+AGG | - | chr4_3:59095891-59095910 | None:intergenic | 20.0% |
| !!! | TTTATTTTGGTATTTGGATG+AGG | + | chr4_3:59093253-59093272 | Msa0651630:intron | 25.0% |
| !! | TTACATGTTTGCTTTAACTT+TGG | + | chr4_3:59093410-59093429 | Msa0651630:CDS | 25.0% |
| !! | AATTTTGCTTGGAATCTAAA+AGG | + | chr4_3:59093782-59093801 | Msa0651630:intron | 25.0% |
| !! | TTCATTTTAAATTAGTGGCA+AGG | + | chr4_3:59093846-59093865 | Msa0651630:intron | 25.0% |
| ! | TAGTAAATAATTGTGTTCGA+GGG | + | chr4_3:59093885-59093904 | Msa0651630:intron | 25.0% |
| ! | TTTGAACATTGAAGATGTAT+TGG | - | chr4_3:59094080-59094099 | None:intergenic | 25.0% |
| ! | TCAGAAACTGTAAAAGAAAA+TGG | + | chr4_3:59094125-59094144 | Msa0651630:intron | 25.0% |
| ! | GTTGAAATGAAAATGAAAAC+AGG | + | chr4_3:59094186-59094205 | Msa0651630:intron | 25.0% |
| ! | GAAAATGAAAACAGGAAATA+TGG | + | chr4_3:59094194-59094213 | Msa0651630:intron | 25.0% |
| ! | ATCCAGATTTCAAAATTTCA+GGG | - | chr4_3:59094232-59094251 | None:intergenic | 25.0% |
| ! | AACTATCATAAAAGAAGGAA+GGG | - | chr4_3:59094360-59094379 | None:intergenic | 25.0% |
| ! | TCATCAACTATCATAAAAGA+AGG | - | chr4_3:59094365-59094384 | None:intergenic | 25.0% |
| !! | TGATGATAATGTATCTAAGA+AGG | + | chr4_3:59094392-59094411 | Msa0651630:CDS | 25.0% |
| ! | TTTCATGAATTCATATTACC+GGG | - | chr4_3:59094749-59094768 | None:intergenic | 25.0% |
| ! | ATTTCTCATCAAACATTTGT+AGG | + | chr4_3:59095085-59095104 | Msa0651630:intron | 25.0% |
| ! | CCCCATAAATATAAGTTTAT+AGG | - | chr4_3:59095231-59095250 | None:intergenic | 25.0% |
| ! | ATCGTTTAATTCTTCAGATA+AGG | - | chr4_3:59095270-59095289 | None:intergenic | 25.0% |
| ! | TAAGATTGTCATGAAATTTC+AGG | + | chr4_3:59095324-59095343 | Msa0651630:intron | 25.0% |
| ! | AAGATTGTCATGAAATTTCA+GGG | + | chr4_3:59095325-59095344 | Msa0651630:intron | 25.0% |
| !!! | AACAGAAAAGGATTTTAGTA+AGG | - | chr4_3:59095542-59095561 | None:intergenic | 25.0% |
| !! | CTAAAATCCTTTTCTGTTAA+AGG | + | chr4_3:59095544-59095563 | Msa0651630:intron | 25.0% |
| ! | TTCTTATCCTTTAACAGAAA+AGG | - | chr4_3:59095554-59095573 | None:intergenic | 25.0% |
| !! | TTTTCTGTTAAAGGATAAGA+AGG | + | chr4_3:59095553-59095572 | Msa0651630:intron | 25.0% |
| ! | AGGTGTGATAGAAAATTTAT+AGG | + | chr4_3:59095810-59095829 | Msa0651630:three_prime_UTR | 25.0% |
| ! | ATCAAAACAATGCATTAAAG+GGG | - | chr4_3:59095889-59095908 | None:intergenic | 25.0% |
| AAGAAAACCATTATCCTAAC+CGG | + | chr4_3:59092504-59092523 | Msa0651630:five_prime_UTR | 30.0% | |
| ! | TCGAATATTCAGGTTTCAAA+AGG | + | chr4_3:59093357-59093376 | Msa0651630:intron | 30.0% |
| ! | CGAATATTCAGGTTTCAAAA+GGG | + | chr4_3:59093358-59093377 | Msa0651630:intron | 30.0% |
| CTTGAAGTCAACATTATAAC+TGG | + | chr4_3:59093553-59093572 | Msa0651630:intron | 30.0% | |
| TCAATTTGTAAGCCCTTAAT+TGG | + | chr4_3:59093617-59093636 | Msa0651630:intron | 30.0% | |
| TGAGTTATCACACCAATTAA+GGG | - | chr4_3:59093632-59093651 | None:intergenic | 30.0% | |
| ATGAGTTATCACACCAATTA+AGG | - | chr4_3:59093633-59093652 | None:intergenic | 30.0% | |
| ACATACTGAATTAGTTGAAC+TGG | + | chr4_3:59093706-59093725 | Msa0651630:intron | 30.0% | |
| ! | ATCATTTTGCATCAATCCTT+TGG | - | chr4_3:59093761-59093780 | None:intergenic | 30.0% |
| ! | GCAAAATGATGAATTTTGCT+TGG | + | chr4_3:59093771-59093790 | Msa0651630:intron | 30.0% |
| GTAGTAAATAATTGTGTTCG+AGG | + | chr4_3:59093884-59093903 | Msa0651630:intron | 30.0% | |
| ! | TTTTCACTGTTAAATGGGAT+TGG | + | chr4_3:59093968-59093987 | Msa0651630:intron | 30.0% |
| ACATTATACATCTAACAGCT+TGG | + | chr4_3:59094033-59094052 | Msa0651630:intron | 30.0% | |
| CATTATACATCTAACAGCTT+GGG | + | chr4_3:59094034-59094053 | Msa0651630:intron | 30.0% | |
| AACTGTAAAAGAAAATGGTG+CGG | + | chr4_3:59094130-59094149 | Msa0651630:intron | 30.0% | |
| GATCCAGATTTCAAAATTTC+AGG | - | chr4_3:59094233-59094252 | None:intergenic | 30.0% | |
| !!! | AATTTTGAAATCTGGATCCT+AGG | + | chr4_3:59094235-59094254 | Msa0651630:intron | 30.0% |
| ATAAATCAACACCAAAACCT+AGG | - | chr4_3:59094255-59094274 | None:intergenic | 30.0% | |
| CAACTATCATAAAAGAAGGA+AGG | - | chr4_3:59094361-59094380 | None:intergenic | 30.0% | |
| AGGAGTTCAATGAAATTGAT+TGG | + | chr4_3:59094412-59094431 | Msa0651630:CDS | 30.0% | |
| !! | AATGAAATTGATTGGTCTGT+TGG | + | chr4_3:59094420-59094439 | Msa0651630:CDS | 30.0% |
| TGACACTGATAGATATTCTA+AGG | + | chr4_3:59094592-59094611 | Msa0651630:CDS | 30.0% | |
| ACATGATTTGATTATTCTCC+CGG | + | chr4_3:59094728-59094747 | Msa0651630:CDS | 30.0% | |
| !!! | ATGAGAACTGACTTTTTTGA+TGG | - | chr4_3:59094846-59094865 | None:intergenic | 30.0% |
| AATCATATACTTCTGCAATG+TGG | - | chr4_3:59094996-59095015 | None:intergenic | 30.0% | |
| GATAAGGACTACAATTTGAA+GGG | - | chr4_3:59095254-59095273 | None:intergenic | 30.0% | |
| AGATAAGGACTACAATTTGA+AGG | - | chr4_3:59095255-59095274 | None:intergenic | 30.0% | |
| AATTCAGCTGGAAGAATATA+CGG | + | chr4_3:59095412-59095431 | Msa0651630:CDS | 30.0% | |
| ACACAAACAAGGTTTACTAA+AGG | + | chr4_3:59095462-59095481 | Msa0651630:CDS | 30.0% | |
| GAATCACAATGGTAACAAAA+GGG | - | chr4_3:59095497-59095516 | None:intergenic | 30.0% | |
| AGAATCACAATGGTAACAAA+AGG | - | chr4_3:59095498-59095517 | None:intergenic | 30.0% | |
| AATTGGATCAAGAATCACAA+TGG | - | chr4_3:59095508-59095527 | None:intergenic | 30.0% | |
| TTTGCCATCAATAACTACTA+CGG | - | chr4_3:59095633-59095652 | None:intergenic | 30.0% | |
| TCAAAACAATGCATTAAAGG+GGG | - | chr4_3:59095888-59095907 | None:intergenic | 30.0% | |
| !! | CTCTGAATCTCATTTTTCAA+GGG | + | chr4_3:59095936-59095955 | Msa0651630:three_prime_UTR | 30.0% |
| ATAGGAAAAAGTTACCTACA+GGG | + | chr4_3:59095967-59095986 | Msa0651630:three_prime_UTR | 30.0% | |
| ! | ATTTTCAACTCTGCAGAATA+TGG | - | chr4_3:59096055-59096074 | None:intergenic | 30.0% |
| CATAACTCCAGTTGTTAAAA+GGG | + | chr4_3:59096105-59096124 | Msa0651630:three_prime_UTR | 30.0% | |
| ! | AAGAAGAACTTTCTTTGGAG+GGG | - | chr4_3:59092735-59092754 | None:intergenic | 35.0% |
| GAAGAAGAACTTTCTTTGGA+GGG | - | chr4_3:59092736-59092755 | None:intergenic | 35.0% | |
| ATGGGAAGAAGAACTTTCTT+TGG | - | chr4_3:59092740-59092759 | None:intergenic | 35.0% | |
| AAGAAAGTTCTTCTTCCCAT+CGG | + | chr4_3:59092740-59092759 | Msa0651630:CDS | 35.0% | |
| ! | AAGGACGTGGATTAAGATAA+CGG | - | chr4_3:59092789-59092808 | None:intergenic | 35.0% |
| TTTGATCTCATTGCTTTACC+TGG | + | chr4_3:59092926-59092945 | Msa0651630:CDS | 35.0% | |
| AATCACATGTAAACAAGCTG+AGG | + | chr4_3:59092997-59093016 | Msa0651630:CDS | 35.0% | |
| GTAAACAAGCTGAGGAAAAT+AGG | + | chr4_3:59093005-59093024 | Msa0651630:CDS | 35.0% | |
| GCTGAGGAAAATAGGTTATT+TGG | + | chr4_3:59093013-59093032 | Msa0651630:CDS | 35.0% | |
| ! | AGTTTGATTTCGTGCATGTT+TGG | + | chr4_3:59093124-59093143 | Msa0651630:intron | 35.0% |
| TGTTATCTTGCAACACAAAC+TGG | - | chr4_3:59093289-59093308 | None:intergenic | 35.0% | |
| TAGGGAAGAAATGAATACGT+AGG | + | chr4_3:59093525-59093544 | Msa0651630:intron | 35.0% | |
| GGTGGAAAACAAAAATCCAA+AGG | + | chr4_3:59093742-59093761 | Msa0651630:intron | 35.0% | |
| ATAATTGTGTTCGAGGGAAA+TGG | + | chr4_3:59093891-59093910 | Msa0651630:intron | 35.0% | |
| !!! | TCATTCTTTGAGCTAGCTTT+TGG | - | chr4_3:59094001-59094020 | None:intergenic | 35.0% |
| ACTGTAAAAGAAAATGGTGC+GGG | + | chr4_3:59094131-59094150 | Msa0651630:intron | 35.0% | |
| !!! | GACCCTGAAATTTTGAAATC+TGG | + | chr4_3:59094227-59094246 | Msa0651630:intron | 35.0% |
| ATCAGATATCACAGAATGGT+AGG | - | chr4_3:59094296-59094315 | None:intergenic | 35.0% | |
| ATGCATCAGATATCACAGAA+TGG | - | chr4_3:59094300-59094319 | None:intergenic | 35.0% | |
| ATAAGACAGTAACCTACACT+GGG | - | chr4_3:59094456-59094475 | None:intergenic | 35.0% | |
| TATAAGACAGTAACCTACAC+TGG | - | chr4_3:59094457-59094476 | None:intergenic | 35.0% | |
| ACATGTATGTTATGCTAACC+AGG | + | chr4_3:59094527-59094546 | Msa0651630:intron | 35.0% | |
| !!! | GCTGCATTTTTTTTTGTCTG+TGG | + | chr4_3:59094780-59094799 | Msa0651630:intron | 35.0% |
| GTTTATAGGTGCTTATGAAG+AGG | - | chr4_3:59095217-59095236 | None:intergenic | 35.0% | |
| TCTTAGCAACAAAGAACGAT+GGG | - | chr4_3:59095309-59095328 | None:intergenic | 35.0% | |
| ATCTTAGCAACAAAGAACGA+TGG | - | chr4_3:59095310-59095329 | None:intergenic | 35.0% | |
| ATTGTCATGAAATTTCAGGG+AGG | + | chr4_3:59095328-59095347 | Msa0651630:intron | 35.0% | |
| CTCAAAGAACAAAATTCAGC+TGG | + | chr4_3:59095400-59095419 | Msa0651630:CDS | 35.0% | |
| GTAAGGCTTCACTAAAGAAT+TGG | - | chr4_3:59095525-59095544 | None:intergenic | 35.0% | |
| TTAAGATTGTCCATGGAAGA+GGG | - | chr4_3:59095590-59095609 | None:intergenic | 35.0% | |
| ! | TTTAAGATTGTCCATGGAAG+AGG | - | chr4_3:59095591-59095610 | None:intergenic | 35.0% |
| TCCATGGACAATCTTAAAGA+CGG | + | chr4_3:59095593-59095612 | Msa0651630:CDS | 35.0% | |
| GCTATTGTGAGCAAGTTATT+TGG | + | chr4_3:59095698-59095717 | Msa0651630:CDS | 35.0% | |
| GTGAGCAAGTTATTTGGTAA+TGG | + | chr4_3:59095704-59095723 | Msa0651630:CDS | 35.0% | |
| TCCTAGGATACTCAAAAACA+AGG | - | chr4_3:59095754-59095773 | None:intergenic | 35.0% | |
| AAATAGACTACTAGAGCATG+TGG | + | chr4_3:59095773-59095792 | Msa0651630:exon | 35.0% | |
| ! | ATGTGGTTTCAAGTACTTGT+AGG | + | chr4_3:59095790-59095809 | Msa0651630:three_prime_UTR | 35.0% |
| AAAATGAGATTCAGAGGACA+TGG | - | chr4_3:59095932-59095951 | None:intergenic | 35.0% | |
| CCTTGAAAAATGAGATTCAG+AGG | - | chr4_3:59095938-59095957 | None:intergenic | 35.0% | |
| !! | CCTCTGAATCTCATTTTTCA+AGG | + | chr4_3:59095935-59095954 | Msa0651630:three_prime_UTR | 35.0% |
| !!! | GAATCTCATTTTTCAAGGGA+TGG | + | chr4_3:59095940-59095959 | Msa0651630:three_prime_UTR | 35.0% |
| CATAGGAAAAAGTTACCTAC+AGG | + | chr4_3:59095966-59095985 | Msa0651630:three_prime_UTR | 35.0% | |
| ! | TTATATTTTGCACACCCTGT+AGG | - | chr4_3:59095984-59096003 | None:intergenic | 35.0% |
| GTTTCAGCTTAGTTGAACAT+TGG | + | chr4_3:59096020-59096039 | Msa0651630:three_prime_UTR | 35.0% | |
| TGCAGAGTTGAAAATATGCT+GGG | + | chr4_3:59096060-59096079 | Msa0651630:three_prime_UTR | 35.0% | |
| ! | CCTTTTAACAACTGGAGTTA+TGG | - | chr4_3:59096107-59096126 | None:intergenic | 35.0% |
| CCATAACTCCAGTTGTTAAA+AGG | + | chr4_3:59096104-59096123 | Msa0651630:three_prime_UTR | 35.0% | |
| TGGAGAGATGGAAATGGAAA+GGG | - | chr4_3:59092690-59092709 | None:intergenic | 40.0% | |
| GGAAGAAGAACTTTCTTTGG+AGG | - | chr4_3:59092737-59092756 | None:intergenic | 40.0% | |
| ! | GTAGCTTGTGGAAAAATGCA+GGG | - | chr4_3:59093317-59093336 | None:intergenic | 40.0% |
| GGCTGTTAAGTCGAATATTC+AGG | + | chr4_3:59093347-59093366 | Msa0651630:intron | 40.0% | |
| CAAACATGTAAGCAGTTCCA+GGG | - | chr4_3:59093401-59093420 | None:intergenic | 40.0% | |
| ACTTTGGCTGAACAGCTATT+TGG | + | chr4_3:59093426-59093445 | Msa0651630:CDS | 40.0% | |
| CTTTGGCTGAACAGCTATTT+GGG | + | chr4_3:59093427-59093446 | Msa0651630:CDS | 40.0% | |
| TTTGGCTGAACAGCTATTTG+GGG | + | chr4_3:59093428-59093447 | Msa0651630:CDS | 40.0% | |
| ! | TGTGTTGCTAAATATTCGCG+TGG | + | chr4_3:59093594-59093613 | Msa0651630:intron | 40.0% |
| TTGAACTGGAGAGTTTACGA+AGG | + | chr4_3:59093720-59093739 | Msa0651630:intron | 40.0% | |
| TGAACTGGAGAGTTTACGAA+GGG | + | chr4_3:59093721-59093740 | Msa0651630:intron | 40.0% | |
| !!! | CTTTGAGCTAGCTTTTGGAT+GGG | - | chr4_3:59093996-59094015 | None:intergenic | 40.0% |
| !!! | TCTTTGAGCTAGCTTTTGGA+TGG | - | chr4_3:59093997-59094016 | None:intergenic | 40.0% |
| ATTGGAATCCCACATTGATC+AGG | - | chr4_3:59094062-59094081 | None:intergenic | 40.0% | |
| GAAAATGGTGCGGGAAAAAT+TGG | + | chr4_3:59094140-59094159 | Msa0651630:intron | 40.0% | |
| ! | GAAATCTGGATCCTAGGTTT+TGG | + | chr4_3:59094241-59094260 | Msa0651630:intron | 40.0% |
| CTGTGATATCTGATGCATGT+TGG | + | chr4_3:59094302-59094321 | Msa0651630:intron | 40.0% | |
| TAAGACAGTAACCTACACTG+GGG | - | chr4_3:59094455-59094474 | None:intergenic | 40.0% | |
| GCTTCTGTTGAGAAAACTCT+TGG | + | chr4_3:59094639-59094658 | Msa0651630:CDS | 40.0% | |
| TGAGAAAACTCTTGGAGTCT+TGG | + | chr4_3:59094647-59094666 | Msa0651630:CDS | 40.0% | |
| TTTGTGTAGAATAGCAGGTG+AGG | - | chr4_3:59095449-59095468 | None:intergenic | 40.0% | |
| ! | CCTTGTTTGTGTAGAATAGC+AGG | - | chr4_3:59095454-59095473 | None:intergenic | 40.0% |
| CCTGCTATTCTACACAAACA+AGG | + | chr4_3:59095451-59095470 | Msa0651630:CDS | 40.0% | |
| !! | TCCGTCTTTAAGATTGTCCA+TGG | - | chr4_3:59095597-59095616 | None:intergenic | 40.0% |
| GATGCCGTAGTAGTTATTGA+TGG | + | chr4_3:59095626-59095645 | Msa0651630:CDS | 40.0% | |
| !!! | GCCTTGTTTTTGAGTATCCT+AGG | + | chr4_3:59095750-59095769 | Msa0651630:CDS | 40.0% |
| GCTCTAGTAGTCTATTTCCT+AGG | - | chr4_3:59095770-59095789 | None:intergenic | 40.0% | |
| CCTGAAAACAAATCAGGCTT+GGG | - | chr4_3:59095849-59095868 | None:intergenic | 40.0% | |
| ACCTGAAAACAAATCAGGCT+TGG | - | chr4_3:59095850-59095869 | None:intergenic | 40.0% | |
| !!! | AAGCCTGATTTGTTTTCAGG+TGG | + | chr4_3:59095849-59095868 | Msa0651630:three_prime_UTR | 40.0% |
| ACACCACCTGAAAACAAATC+AGG | - | chr4_3:59095855-59095874 | None:intergenic | 40.0% | |
| !! | TTTTCAAGGGATGGTTGCAT+AGG | + | chr4_3:59095949-59095968 | Msa0651630:three_prime_UTR | 40.0% |
| CTGCAGAGTTGAAAATATGC+TGG | + | chr4_3:59096059-59096078 | Msa0651630:three_prime_UTR | 40.0% | |
| ! | TCTCAGTCCCTTTTAACAAC+TGG | - | chr4_3:59096115-59096134 | None:intergenic | 40.0% |
| CGCAATTCCGGTTAGGATAA+TGG | - | chr4_3:59092514-59092533 | None:intergenic | 45.0% | |
| AAGAAGTAGGAGCAACGACA+TGG | - | chr4_3:59092552-59092571 | None:intergenic | 45.0% | |
| AAGGTTGAGGCAGAAGAAGT+AGG | - | chr4_3:59092565-59092584 | None:intergenic | 45.0% | |
| !! | GAATGGAGAGAGTCTTGTTG+TGG | - | chr4_3:59092594-59092613 | None:intergenic | 45.0% |
| GAAATGGAAAGGGTGGAGTT+TGG | - | chr4_3:59092680-59092699 | None:intergenic | 45.0% | |
| AGAGATGGAAATGGAAAGGG+TGG | - | chr4_3:59092687-59092706 | None:intergenic | 45.0% | |
| GTGGAGAGATGGAAATGGAA+AGG | - | chr4_3:59092691-59092710 | None:intergenic | 45.0% | |
| ! | AAGAACTTTCTTTGGAGGGG+AGG | - | chr4_3:59092732-59092751 | None:intergenic | 45.0% |
| !! | GTTCTTCTTCCCATCGGTTT+CGG | + | chr4_3:59092746-59092765 | Msa0651630:CDS | 45.0% |
| ! | GATAACGGCTTCCATTTCCT+CGG | - | chr4_3:59092774-59092793 | None:intergenic | 45.0% |
| AACTTGAAGCTGAGGCTCAA+CGG | - | chr4_3:59092843-59092862 | None:intergenic | 45.0% | |
| GATCTCATTGCTTTACCTGG+AGG | + | chr4_3:59092929-59092948 | Msa0651630:CDS | 45.0% | |
| TCTCTCAATCTTGCTGAACC+AGG | - | chr4_3:59092959-59092978 | None:intergenic | 45.0% | |
| ! | TGCTGTTACGCTTTTGCCTT+GGG | + | chr4_3:59093054-59093073 | Msa0651630:CDS | 45.0% |
| TTTCTCTTCAAGAGACCCCA+AGG | - | chr4_3:59093073-59093092 | None:intergenic | 45.0% | |
| GGGTCTCTTGAAGAGAAAGA+AGG | + | chr4_3:59093075-59093094 | Msa0651630:CDS | 45.0% | |
| ! | GGTAGCTTGTGGAAAAATGC+AGG | - | chr4_3:59093318-59093337 | None:intergenic | 45.0% |
| ! | TCCACAAGCTACCAACGTTT+TGG | + | chr4_3:59093325-59093344 | Msa0651630:intron | 45.0% |
| ! | CCACAAGCTACCAACGTTTT+GGG | + | chr4_3:59093326-59093345 | Msa0651630:intron | 45.0% |
| GACTTAACAGCCCAAAACGT+TGG | - | chr4_3:59093339-59093358 | None:intergenic | 45.0% | |
| GCAAACATGTAAGCAGTTCC+AGG | - | chr4_3:59093402-59093421 | None:intergenic | 45.0% | |
| TATTTGGGGAGTCTGTTGCA+AGG | + | chr4_3:59093442-59093461 | Msa0651630:CDS | 45.0% | |
| ATTTGGGGAGTCTGTTGCAA+GGG | + | chr4_3:59093443-59093462 | Msa0651630:CDS | 45.0% | |
| AAGGGAGGTTGCTGAATTCT+TGG | + | chr4_3:59093461-59093480 | Msa0651630:CDS | 45.0% | |
| TTGACTCACCAGCTAGACTA+TGG | - | chr4_3:59093666-59093685 | None:intergenic | 45.0% | |
| TTGTGTTCGAGGGAAATGGA+AGG | + | chr4_3:59093895-59093914 | Msa0651630:intron | 45.0% | |
| CTTGGGAACCTGATCAATGT+GGG | + | chr4_3:59094051-59094070 | Msa0651630:intron | 45.0% | |
| AAGACAGTAACCTACACTGG+GGG | - | chr4_3:59094454-59094473 | None:intergenic | 45.0% | |
| GTGGCTTCAAACATGAGAGT+TGG | - | chr4_3:59094977-59094996 | None:intergenic | 45.0% | |
| TAGCAACAAAGAACGATGGG+TGG | - | chr4_3:59095306-59095325 | None:intergenic | 45.0% | |
| AAATTTCAGGGAGGAACTGC+TGG | + | chr4_3:59095337-59095356 | Msa0651630:intron | 45.0% | |
| TGGCAAAGTGATCACTTGTG+AGG | + | chr4_3:59095646-59095665 | Msa0651630:CDS | 45.0% | |
| GGCAAAGTGATCACTTGTGA+GGG | + | chr4_3:59095647-59095666 | Msa0651630:CDS | 45.0% | |
| CAATGCAAACTCCGTTACAG+TGG | - | chr4_3:59095678-59095697 | None:intergenic | 45.0% | |
| ! | CACTGTAACGGAGTTTGCAT+TGG | + | chr4_3:59095676-59095695 | Msa0651630:CDS | 45.0% |
| ! | AGAGCAAGAAGTGTAGCAGA+AGG | + | chr4_3:59095728-59095747 | Msa0651630:CDS | 45.0% |
| AAACAAATCAGGCTTGGGCT+GGG | - | chr4_3:59095844-59095863 | None:intergenic | 45.0% | |
| AAAACAAATCAGGCTTGGGC+TGG | - | chr4_3:59095845-59095864 | None:intergenic | 45.0% | |
| !!! | CCCAAGCCTGATTTGTTTTC+AGG | + | chr4_3:59095846-59095865 | Msa0651630:three_prime_UTR | 45.0% |
| GATTCAGAGGACATGGTGAT+TGG | - | chr4_3:59095925-59095944 | None:intergenic | 45.0% | |
| CTGTTACCACAGCGCAATTC+CGG | - | chr4_3:59092526-59092545 | None:intergenic | 50.0% | |
| !! | TGGAGAGAGTCTTGTTGTGG+CGG | - | chr4_3:59092591-59092610 | None:intergenic | 50.0% |
| ! | TTTAGGGTGAGAGTGGAGGT+GGG | - | chr4_3:59092623-59092642 | None:intergenic | 50.0% |
| !!! | TTTTAGGGTGAGAGTGGAGG+TGG | - | chr4_3:59092624-59092643 | None:intergenic | 50.0% |
| !!! | TGAGGGTTTTAGGGTGAGAG+TGG | - | chr4_3:59092630-59092649 | None:intergenic | 50.0% |
| ! | AAGGGTGGGTGAGGGTTTTA+GGG | - | chr4_3:59092639-59092658 | None:intergenic | 50.0% |
| ! | AAAGGGTGGGTGAGGGTTTT+AGG | - | chr4_3:59092640-59092659 | None:intergenic | 50.0% |
| !! | TGGTGGTGGAGAGATGGAAA+TGG | - | chr4_3:59092696-59092715 | None:intergenic | 50.0% |
| GCAGCTTCAACTTGAAGCTG+AGG | - | chr4_3:59092851-59092870 | None:intergenic | 50.0% | |
| !! | CAGCTTCAAGTTGAAGCTGC+TGG | + | chr4_3:59092851-59092870 | Msa0651630:CDS | 50.0% |
| !! | CTTCAAGTTGAAGCTGCTGG+TGG | + | chr4_3:59092854-59092873 | Msa0651630:CDS | 50.0% |
| ! | CAAGGCAAAAGCGTAACAGC+AGG | - | chr4_3:59093055-59093074 | None:intergenic | 50.0% |
| ! | CTGCTGTTACGCTTTTGCCT+TGG | + | chr4_3:59093053-59093072 | Msa0651630:CDS | 50.0% |
| ! | GCTGTTACGCTTTTGCCTTG+GGG | + | chr4_3:59093055-59093074 | Msa0651630:CDS | 50.0% |
| !! | CCCAAAACGTTGGTAGCTTG+TGG | - | chr4_3:59093329-59093348 | None:intergenic | 50.0% |
| AAAGGGCTTACAACAAGCCG+TGG | + | chr4_3:59093375-59093394 | Msa0651630:CDS | 50.0% | |
| ACCAGAAGCCATAGTCTAGC+TGG | + | chr4_3:59093655-59093674 | Msa0651630:intron | 50.0% | |
| ACCAGCTAGACTATGGCTTC+TGG | - | chr4_3:59093659-59093678 | None:intergenic | 50.0% | |
| ACTGGAGAGTTTACGAAGGG+TGG | + | chr4_3:59093724-59093743 | Msa0651630:intron | 50.0% | |
| AGGGAAATGGAAGGCAGGTT+AGG | + | chr4_3:59093904-59093923 | Msa0651630:intron | 50.0% | |
| GCTTGGGAACCTGATCAATG+TGG | + | chr4_3:59094050-59094069 | Msa0651630:intron | 50.0% | |
| AGACAGTAACCTACACTGGG+GGG | - | chr4_3:59094453-59094472 | None:intergenic | 50.0% | |
| TTGTCCATGCTTCTGCAACG+AGG | + | chr4_3:59094499-59094518 | Msa0651630:intron | 50.0% | |
| AGATCCTCGTTGCAGAAGCA+TGG | - | chr4_3:59094506-59094525 | None:intergenic | 50.0% | |
| CTTCAGAACCATGCGCGATT+GGG | - | chr4_3:59094560-59094579 | None:intergenic | 50.0% | |
| TCTTCAGAACCATGCGCGAT+TGG | - | chr4_3:59094561-59094580 | None:intergenic | 50.0% | |
| CTTGGAGTCTTGGCTTCTCA+AGG | + | chr4_3:59094657-59094676 | Msa0651630:CDS | 50.0% | |
| CAAGCTGCTGCATTTCTGTG+TGG | + | chr4_3:59094884-59094903 | Msa0651630:intron | 50.0% | |
| AATAGCAGGTGAGGAGCAGA+CGG | - | chr4_3:59095440-59095459 | None:intergenic | 50.0% | |
| TACAGCTCATCCCTCTTCCA+TGG | + | chr4_3:59095577-59095596 | Msa0651630:CDS | 50.0% | |
| TGAGGGACTTGCCACTGTAA+CGG | + | chr4_3:59095664-59095683 | Msa0651630:CDS | 50.0% | |
| AACAAATCAGGCTTGGGCTG+GGG | - | chr4_3:59095843-59095862 | None:intergenic | 50.0% | |
| TCCTAACCGGAATTGCGCTG+TGG | + | chr4_3:59092517-59092536 | Msa0651630:five_prime_UTR | 55.0% | |
| ACCACAGCGCAATTCCGGTT+AGG | - | chr4_3:59092521-59092540 | None:intergenic | 55.0% | |
| !! | AGTCTTGTTGTGGCGGTGGA+AGG | - | chr4_3:59092584-59092603 | None:intergenic | 55.0% |
| !! | AGAGAGTCTTGTTGTGGCGG+TGG | - | chr4_3:59092588-59092607 | None:intergenic | 55.0% |
| TTAGGGTGAGAGTGGAGGTG+GGG | - | chr4_3:59092622-59092641 | None:intergenic | 55.0% | |
| !!! | GGGTTTTAGGGTGAGAGTGG+AGG | - | chr4_3:59092627-59092646 | None:intergenic | 55.0% |
| AGTGGAGCGTGGAGGTGAAA+GGG | - | chr4_3:59092657-59092676 | None:intergenic | 55.0% | |
| GGAAAGGGTGGAGTTTGGAG+TGG | - | chr4_3:59092675-59092694 | None:intergenic | 55.0% | |
| !! | AGGTGTTGGTGGTGGAGAGA+TGG | - | chr4_3:59092702-59092721 | None:intergenic | 55.0% |
| !! | GCATTCGTAGGTGTTGGTGG+TGG | - | chr4_3:59092710-59092729 | None:intergenic | 55.0% |
| !! | GAGGCATTCGTAGGTGTTGG+TGG | - | chr4_3:59092713-59092732 | None:intergenic | 55.0% |
| !! | TTTGGAGGGGAGGCATTCGT+AGG | - | chr4_3:59092722-59092741 | None:intergenic | 55.0% |
| AGCTACGGTGACATGAGCAC+CGG | - | chr4_3:59092819-59092838 | None:intergenic | 55.0% | |
| CTGAGGCTCAACGGAAGCTA+CGG | - | chr4_3:59092834-59092853 | None:intergenic | 55.0% | |
| GCTTTACCTGGAGGAATGCC+TGG | + | chr4_3:59092938-59092957 | Msa0651630:CDS | 55.0% | |
| TGTAAGCAGTTCCAGGGCCA+CGG | - | chr4_3:59093395-59093414 | None:intergenic | 55.0% | |
| GTTCGAGGGAAATGGAAGGC+AGG | + | chr4_3:59093899-59093918 | Msa0651630:intron | 55.0% | |
| AGTAACCTACACTGGGGGGA+TGG | - | chr4_3:59094449-59094468 | None:intergenic | 55.0% | |
| GTTCTCATCCCAATCGCGCA+TGG | + | chr4_3:59094549-59094568 | Msa0651630:CDS | 55.0% | |
| GTTGTGGCGGTGGAAGGTTG+AGG | - | chr4_3:59092578-59092597 | None:intergenic | 60.0% | |
| GTGGAGGTGGGGATGGTGAA+TGG | - | chr4_3:59092611-59092630 | None:intergenic | 60.0% | |
| GGAGGTGAAAGGGTGGGTGA+GGG | - | chr4_3:59092647-59092666 | None:intergenic | 60.0% | |
| TGGAGGTGAAAGGGTGGGTG+AGG | - | chr4_3:59092648-59092667 | None:intergenic | 60.0% | |
| GAGCGTGGAGGTGAAAGGGT+GGG | - | chr4_3:59092653-59092672 | None:intergenic | 60.0% | |
| GAGTGGAGCGTGGAGGTGAA+AGG | - | chr4_3:59092658-59092677 | None:intergenic | 60.0% | |
| ! | GAGTTTGGAGTGGAGCGTGG+AGG | - | chr4_3:59092665-59092684 | None:intergenic | 60.0% |
| ! | GTGGAGTTTGGAGTGGAGCG+TGG | - | chr4_3:59092668-59092687 | None:intergenic | 60.0% |
| !! | GGGGAGGCATTCGTAGGTGT+TGG | - | chr4_3:59092716-59092735 | None:intergenic | 60.0% |
| !! | TCCTCGGTGCCGAAACCGAT+GGG | - | chr4_3:59092758-59092777 | None:intergenic | 60.0% |
| !! | TTCCTCGGTGCCGAAACCGA+TGG | - | chr4_3:59092759-59092778 | None:intergenic | 60.0% |
| ! | CGGTTTCGGCACCGAGGAAA+TGG | + | chr4_3:59092760-59092779 | Msa0651630:CDS | 60.0% |
| ATCCACGTCCTTCGTCGTGC+CGG | + | chr4_3:59092797-59092816 | Msa0651630:CDS | 60.0% | |
| GCTGAACCAGGCATTCCTCC+AGG | - | chr4_3:59092947-59092966 | None:intergenic | 60.0% | |
| CTTACAACAAGCCGTGGCCC+TGG | + | chr4_3:59093381-59093400 | Msa0651630:CDS | 60.0% | |
| TGGGGAGTCTGTTGCAAGGG+AGG | + | chr4_3:59093446-59093465 | Msa0651630:CDS | 60.0% | |
| AACCTACACTGGGGGGATGG+TGG | - | chr4_3:59094446-59094465 | None:intergenic | 60.0% | |
| GCGCGATTGGGATGAGAACC+TGG | - | chr4_3:59094548-59094567 | None:intergenic | 60.0% | |
| GAGGAACTGCTGGCGCTCAA+AGG | + | chr4_3:59095347-59095366 | Msa0651630:CDS | 60.0% | |
| GGTGAGAGTGGAGGTGGGGA+TGG | - | chr4_3:59092618-59092637 | None:intergenic | 65.0% | |
| GGAGCGTGGAGGTGAAAGGG+TGG | - | chr4_3:59092654-59092673 | None:intergenic | 65.0% | |
| !! | TCCCATCGGTTTCGGCACCG+AGG | + | chr4_3:59092754-59092773 | Msa0651630:CDS | 65.0% |
| !! | CATGAGCACCGGCACGACGA+AGG | - | chr4_3:59092808-59092827 | None:intergenic | 65.0% |
| CACCGGCACGACGAAGGACG+TGG | - | chr4_3:59092802-59092821 | None:intergenic | 70.0% | |
| GGCCACCATCCCCCCAGTGT+AGG | + | chr4_3:59094441-59094460 | Msa0651630:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 59092462 | 59096162 | 59092462 | ID=Msa0651630;Name=Msa0651630 |
| chr4_3 | mRNA | 59092462 | 59096162 | 59092462 | ID=Msa0651630-mRNA-1;Parent=Msa0651630;Name=Msa0651630-mRNA-1;_AED=0.06;_eAED=0.06;_QI=89|0.8|0.83|1|1|1|6|384|430 |
| chr4_3 | exon | 59092462 | 59093096 | 59092462 | ID=Msa0651630-mRNA-1:exon:15762;Parent=Msa0651630-mRNA-1 |
| chr4_3 | exon | 59093369 | 59093482 | 59093369 | ID=Msa0651630-mRNA-1:exon:15763;Parent=Msa0651630-mRNA-1 |
| chr4_3 | exon | 59094378 | 59094458 | 59094378 | ID=Msa0651630-mRNA-1:exon:15764;Parent=Msa0651630-mRNA-1 |
| chr4_3 | exon | 59094549 | 59094749 | 59094549 | ID=Msa0651630-mRNA-1:exon:15765;Parent=Msa0651630-mRNA-1 |
| chr4_3 | exon | 59095346 | 59095483 | 59095346 | ID=Msa0651630-mRNA-1:exon:15766;Parent=Msa0651630-mRNA-1 |
| chr4_3 | exon | 59095566 | 59096162 | 59095566 | ID=Msa0651630-mRNA-1:exon:15767;Parent=Msa0651630-mRNA-1 |
| chr4_3 | five_prime_UTR | 59092462 | 59092550 | 59092462 | ID=Msa0651630-mRNA-1:five_prime_utr;Parent=Msa0651630-mRNA-1 |
| chr4_3 | CDS | 59092551 | 59093096 | 59092551 | ID=Msa0651630-mRNA-1:cds;Parent=Msa0651630-mRNA-1 |
| chr4_3 | CDS | 59093369 | 59093482 | 59093369 | ID=Msa0651630-mRNA-1:cds;Parent=Msa0651630-mRNA-1 |
| chr4_3 | CDS | 59094378 | 59094458 | 59094378 | ID=Msa0651630-mRNA-1:cds;Parent=Msa0651630-mRNA-1 |
| chr4_3 | CDS | 59094549 | 59094749 | 59094549 | ID=Msa0651630-mRNA-1:cds;Parent=Msa0651630-mRNA-1 |
| chr4_3 | CDS | 59095346 | 59095483 | 59095346 | ID=Msa0651630-mRNA-1:cds;Parent=Msa0651630-mRNA-1 |
| chr4_3 | CDS | 59095566 | 59095778 | 59095566 | ID=Msa0651630-mRNA-1:cds;Parent=Msa0651630-mRNA-1 |
| chr4_3 | three_prime_UTR | 59095779 | 59096162 | 59095779 | ID=Msa0651630-mRNA-1:three_prime_utr;Parent=Msa0651630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
