AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455560 MtrunA17_Chr8g0385761 97.248 327 6 1 28 354 1 324 0.0 657
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455560 AT4G25080.6 73.810 294 66 4 66 354 39 326 1.63e-155 440
Msa1455560 AT4G25080.2 71.753 308 70 5 52 354 17 312 1.89e-155 439
Msa1455560 AT4G25080.3 71.753 308 70 5 52 354 17 312 1.89e-155 439
Msa1455560 AT4G25080.5 71.753 308 70 5 52 354 17 312 1.89e-155 439
Msa1455560 AT4G25080.1 71.753 308 70 5 52 354 17 312 1.89e-155 439
Msa1455560 AT4G25080.4 78.088 251 49 2 104 354 1 245 3.84e-145 410

Find 131 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCATGTAGTTTCAAATT+TGG 0.101475 tig0036353:-20095 None:intergenic
GATTGCTCACCTTGCTTCTT+TGG 0.174968 tig0036353:+19653 Msa1455560:CDS
TGTTCGCGTCGTCGTCTTTC+CGG 0.201498 tig0036353:-17880 None:intergenic
CAACTTGTGTCCAGTGAAAA+TGG 0.270170 tig0036353:+19510 Msa1455560:CDS
GGATGATGAGAACGCCATTT+TGG 0.276616 tig0036353:-17629 None:intergenic
CGCGATTGTTGTGCCGTCTA+TGG 0.289010 tig0036353:-17803 None:intergenic
GGTGAGTGATTTAGAGAGTT+TGG 0.296867 tig0036353:+19560 Msa1455560:CDS
GAACATGCAATGATAATAAA+AGG 0.309474 tig0036353:-20171 None:intergenic
ATAGAGTTCAACGGGATATT+AGG 0.312977 tig0036353:+18007 Msa1455560:CDS
TGGCATGTAGTTTCAAATTT+GGG 0.320809 tig0036353:-20094 None:intergenic
TGTGATGCTGGTTGTGGTAC+TGG 0.330850 tig0036353:+18105 Msa1455560:CDS
AAGTAGGACCCACGAGAATC+AGG 0.337401 tig0036353:+17512 Msa1455560:five_prime_UTR
TTTGTTGTGGGCGGCGGGAG+AGG 0.346664 tig0036353:-17716 None:intergenic
TCACTCAAATCAAACCAAAA+TGG 0.348627 tig0036353:+17615 Msa1455560:CDS
GAATGCTATCTTATCTTTCC+TGG 0.348744 tig0036353:+17551 Msa1455560:exon
GCATCATAATAAAATGTCTT+AGG 0.351793 tig0036353:-19705 None:intergenic
CAACGATGGAAGAAGATTTA+CGG 0.365499 tig0036353:+17967 Msa1455560:CDS
GAAAGATGAAGGGCCACTTC+AGG 0.373746 tig0036353:+18071 Msa1455560:CDS
GTTCGCGTCGTCGTCTTTCC+GGG 0.385307 tig0036353:-17879 None:intergenic
GGAAAGACGACGACGCGAAC+AGG 0.395017 tig0036353:+17882 Msa1455560:CDS
GGAATATAATATACATATCC+AGG 0.395360 tig0036353:-20010 None:intergenic
ATACATATCCAGGGGATCAT+AGG 0.401558 tig0036353:-20000 None:intergenic
GCAACAGCCGCCGACGTTAC+CGG 0.402705 tig0036353:+17778 Msa1455560:CDS
AATATAATCGATGCATCAAC+TGG 0.405124 tig0036353:-20114 None:intergenic
GGTGTTACTATTTGTGATGC+TGG 0.416395 tig0036353:+18093 Msa1455560:CDS
AATGGCTTACAATATACATT+AGG 0.416961 tig0036353:-19950 None:intergenic
AAAGGGCGTTGCGCAAGGTT+GGG 0.417723 tig0036353:+19805 Msa1455560:CDS
GGTTGCTGAAGCTGAGAAAC+AGG 0.419084 tig0036353:+18194 Msa1455560:CDS
TGAGAGTGTGAGTGTGAGTT+GGG 0.425010 tig0036353:-17595 None:intergenic
GTTGTGGGCGGCGGGAGAGG+AGG 0.428584 tig0036353:-17713 None:intergenic
TAAGAGTTTGTTGTGGGCGG+CGG 0.429720 tig0036353:-17722 None:intergenic
AGGGTTGGAGAGTTGTTCCC+TGG 0.435316 tig0036353:+19735 Msa1455560:CDS
CTGAAAGAAGTTTGAAAAGT+AGG 0.444048 tig0036353:+17496 None:intergenic
GTGAGAGTGTGAGTGTGAGT+TGG 0.444943 tig0036353:-17596 None:intergenic
ACAAACAACGGCACCTTCCT+TGG 0.445026 tig0036353:-18148 None:intergenic
GTAAGCGGTGGCTTCGTCGC+TGG 0.445724 tig0036353:+17829 Msa1455560:CDS
TTACAGATGTTGAAAGATGA+AGG 0.450243 tig0036353:+18060 Msa1455560:CDS
AAATCACTCACCACAAACTT+TGG 0.452354 tig0036353:-19549 None:intergenic
AAGTGATGATATTGTTATCC+AGG 0.465411 tig0036353:-17569 None:intergenic
CTGGGCCTTCCAAGGCAACC+AGG 0.466683 tig0036353:+19754 Msa1455560:CDS
TGATGTTAATAGAGTTCAAC+GGG 0.468337 tig0036353:+17999 Msa1455560:CDS
ACTATTTGTGATGCTGGTTG+TGG 0.469095 tig0036353:+18099 Msa1455560:CDS
GAAAGGGCGTTGCGCAAGGT+TGG 0.471715 tig0036353:+19804 Msa1455560:CDS
CTGGTTGCCTTGGAAGGCCC+AGG 0.472074 tig0036353:-19753 None:intergenic
AGTGATTTAGAGAGTTTGGA+TGG 0.476634 tig0036353:+19564 Msa1455560:CDS
AAGAGTTTGTTGTGGGCGGC+GGG 0.476905 tig0036353:-17721 None:intergenic
GGGAGTATTTCAACAACAAC+GGG 0.479355 tig0036353:+17941 Msa1455560:CDS
AAAGATGAAGGGCCACTTCA+GGG 0.481133 tig0036353:+18072 Msa1455560:CDS
GTCGTCTTTCCGGGTCTGAA+AGG 0.481970 tig0036353:-17870 None:intergenic
TTGTGGGCGGCGGGAGAGGA+GGG 0.482263 tig0036353:-17712 None:intergenic
TAAAGCATTCTCAACAGTCT+TGG 0.484120 tig0036353:-18040 None:intergenic
GTTCAACGGGATATTAGGTT+GGG 0.491602 tig0036353:+18012 Msa1455560:CDS
AGTTCAACGGGATATTAGGT+TGG 0.497728 tig0036353:+18011 Msa1455560:CDS
TTTATTATGATGCACTAAAG+AGG 0.498288 tig0036353:+19715 Msa1455560:CDS
TTACTTTGCCAAGCTTATTG+AGG 0.499395 tig0036353:+19866 Msa1455560:CDS
TTCTGAAGCAGATGTTGAAA+GGG 0.501417 tig0036353:+19788 Msa1455560:CDS
TCGTCTTTCCGGGTCTGAAA+GGG 0.501629 tig0036353:-17869 None:intergenic
ACCACAAACTTTGGCATCGC+AGG 0.503004 tig0036353:-19540 None:intergenic
AAGATATGCCCTGGTTGCCT+TGG 0.503839 tig0036353:-19763 None:intergenic
TGGTTCTCTTTCGATTCCGT+TGG 0.504285 tig0036353:+18125 Msa1455560:CDS
AAACTTACCTCTGAATCCTC+TGG 0.506783 tig0036353:-19908 None:intergenic
CAGCATCATTTACGCTAAGA+AGG 0.507758 tig0036353:-20031 None:intergenic
ACGACGACGCGAACAGGCGG+AGG 0.509203 tig0036353:+17888 Msa1455560:CDS
TCGATTCCGTTGGCCAAGGA+AGG 0.510765 tig0036353:+18135 Msa1455560:CDS
GGTTGTTAAGAGTTTGTTGT+GGG 0.511488 tig0036353:-17728 None:intergenic
ACCTGCGATGCCAAAGTTTG+TGG 0.512251 tig0036353:+19539 Msa1455560:CDS
GGTAACGTCGGCGGCTGTTG+CGG 0.517328 tig0036353:-17776 None:intergenic
ATTCTGAAGCAGATGTTGAA+AGG 0.518414 tig0036353:+19787 Msa1455560:CDS
TATGCCCTGGTTGCCTTGGA+AGG 0.522393 tig0036353:-19759 None:intergenic
ACTTCTCTCCCTTTCAGACC+CGG 0.523310 tig0036353:+17861 Msa1455560:CDS
TATGATGCACTAAAGAGGGT+TGG 0.524966 tig0036353:+19720 Msa1455560:CDS
GTTGTTCCCTGGGCCTTCCA+AGG 0.535217 tig0036353:+19746 Msa1455560:CDS
GGGCGTTGCGCAAGGTTGGG+TGG 0.537359 tig0036353:+19808 Msa1455560:CDS
GTCTATGGCGCCGGTAACGT+CGG 0.538591 tig0036353:-17788 None:intergenic
GCGGCTGTTGCGGTTGAGAG+TGG 0.540172 tig0036353:-17766 None:intergenic
TTATTATGATGCACTAAAGA+GGG 0.543982 tig0036353:+19716 Msa1455560:CDS
GCTGTTGCGGTTGAGAGTGG+AGG 0.545699 tig0036353:-17763 None:intergenic
CGCGAACAGGCGGAGGAAGT+AGG 0.545859 tig0036353:+17895 Msa1455560:CDS
TCCCATCTGCTTTACTCTGA+GGG 0.551667 tig0036353:-19629 None:intergenic
TTTCTCAGCTTCAGCAACCA+TGG 0.556058 tig0036353:-18190 None:intergenic
GGGTTGGAGAGTTGTTCCCT+GGG 0.560240 tig0036353:+19736 Msa1455560:CDS
AGGAACAGCCTCAATAAGCT+TGG 0.560754 tig0036353:-19874 None:intergenic
TGTTGAAAGGGCGTTGCGCA+AGG 0.560806 tig0036353:+19800 Msa1455560:CDS
TCTTTCGATTCCGTTGGCCA+AGG 0.564426 tig0036353:+18131 Msa1455560:CDS
GGCAGAAAATTCATCACCCA+AGG 0.565337 tig0036353:-20150 None:intergenic
AGTAGGACCCACGAGAATCA+GGG 0.566735 tig0036353:+17513 Msa1455560:five_prime_UTR
AAGACGACGACGCGAACAGG+CGG 0.569936 tig0036353:+17885 Msa1455560:CDS
TGGTTGCCTTGGAAGGCCCA+GGG 0.570031 tig0036353:-19752 None:intergenic
TGTTGTGCCGTCTATGGCGC+CGG 0.571715 tig0036353:-17797 None:intergenic
TGGGCCTTCCAAGGCAACCA+GGG 0.571898 tig0036353:+19755 Msa1455560:CDS
GACGTTACCGGCGCCATAGA+CGG 0.574011 tig0036353:+17790 Msa1455560:CDS
ACAACAACGGGTTTCAACGA+TGG 0.574622 tig0036353:+17953 Msa1455560:CDS
GAGTGGAGGGATGGCGAATG+TGG 0.575620 tig0036353:-17749 None:intergenic
TATGTTATCCTATGATCCCC+TGG 0.581885 tig0036353:+19992 Msa1455560:three_prime_UTR
AGGGAGAGAATGTAGCGAAA+CGG 0.590209 tig0036353:-17693 None:intergenic
TACCCTCAGAGTAAAGCAGA+TGG 0.593009 tig0036353:+19627 Msa1455560:CDS
ATCCCATCTGCTTTACTCTG+AGG 0.595461 tig0036353:-19630 None:intergenic
AGTGAGTCCAGAGGATTCAG+AGG 0.601420 tig0036353:+19901 Msa1455560:exon
TACAGATGTTGAAAGATGAA+GGG 0.602628 tig0036353:+18061 Msa1455560:CDS
CAAATAGTAACACCCTGAAG+TGG 0.608139 tig0036353:-18084 None:intergenic
CTGTTGCGGTTGAGAGTGGA+GGG 0.608229 tig0036353:-17762 None:intergenic
GAATATAATATACATATCCA+GGG 0.609774 tig0036353:-20009 None:intergenic
ACGGCACCTTCCTTGGCCAA+CGG 0.611174 tig0036353:-18141 None:intergenic
GGGTGGACGATAAAGAAGAA+AGG 0.614466 tig0036353:+19825 Msa1455560:CDS
TGCATGTTCTCAAAATGTCA+AGG 0.621246 tig0036353:+20185 Msa1455560:three_prime_UTR
TATGGCGCCGGTAACGTCGG+CGG 0.621518 tig0036353:-17785 None:intergenic
ACGAGAATCAGGGAAAAGCA+TGG 0.621841 tig0036353:+17523 Msa1455560:five_prime_UTR
TAGTGATATATCAGCTGCCA+TGG 0.622099 tig0036353:+18173 Msa1455560:CDS
ACAACAATCGCGGTCGTAAG+CGG 0.623303 tig0036353:+17814 Msa1455560:CDS
AGGGAGTATTTCAACAACAA+CGG 0.626963 tig0036353:+17940 Msa1455560:CDS
ACCCTCAGAGTAAAGCAGAT+GGG 0.629699 tig0036353:+19628 Msa1455560:CDS
TGGTTGTTAAGAGTTTGTTG+TGG 0.634954 tig0036353:-17729 None:intergenic
GTGATGACAAAGAAGTTGTG+AGG 0.636702 tig0036353:+17920 Msa1455560:CDS
TGCGGTTGAGAGTGGAGGGA+TGG 0.637524 tig0036353:-17758 None:intergenic
AACAAAGAGAGAAGACCACA+TGG 0.638571 tig0036353:-17650 None:intergenic
ATGATGTTAATAGAGTTCAA+CGG 0.639280 tig0036353:+17998 Msa1455560:CDS
TTCAGAATGAAGATATGCCC+TGG 0.639551 tig0036353:-19772 None:intergenic
TGATGACAAAGAAGTTGTGA+GGG 0.644653 tig0036353:+17921 Msa1455560:CDS
TGTTAAGAGTTTGTTGTGGG+CGG 0.646305 tig0036353:-17725 None:intergenic
ACAATCGCGGTCGTAAGCGG+TGG 0.652916 tig0036353:+17817 Msa1455560:CDS
ATCCTCTGGACTCACTACAT+AGG 0.659752 tig0036353:-19894 None:intergenic
GTCTGAAAGGGAGAGAAGTG+CGG 0.675558 tig0036353:-17857 None:intergenic
CATAGACGGCACAACAATCG+CGG 0.676803 tig0036353:+17804 Msa1455560:CDS
GGATGGATTGTACGATACAG+TGG 0.678861 tig0036353:+19581 Msa1455560:CDS
GAACAGGCGGAGGAAGTAGG+CGG 0.681114 tig0036353:+17898 Msa1455560:CDS
TTCCTATGTAGTGAGTCCAG+AGG 0.689702 tig0036353:+19892 Msa1455560:exon
TATATCACTAGCACAAACAA+CGG 0.690655 tig0036353:-18160 None:intergenic
AATATAATATACATATCCAG+GGG 0.707394 tig0036353:-20008 None:intergenic
TGGCGTTCTCATCATCCATG+TGG 0.707884 tig0036353:+17635 Msa1455560:CDS
AAAGGGAGAGAAGTGCGGTG+AGG 0.719705 tig0036353:-17852 None:intergenic
GGTAATGAATCATAACATCG+AGG 0.752533 tig0036353:-19608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTAATATGTAA+CGG + tig0036353:20064-20083 Msa1455560:three_prime_UTR 10.0%
!! TCAAAAATCATAAATATCAA+AGG - tig0036353:18243-18262 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - tig0036353:18507-18526 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - tig0036353:18508-18527 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - tig0036353:18572-18591 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - tig0036353:18573-18592 None:intergenic 15.0%
!! TTATATAAATAGGAAGATTA+TGG + tig0036353:18932-18951 Msa1455560:intron 15.0%
!!! ATTTTATCCTATCTAAGTTT+TGG - tig0036353:18366-18385 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - tig0036353:18474-18493 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - tig0036353:18475-18494 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - tig0036353:18548-18567 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - tig0036353:18571-18590 None:intergenic 20.0%
!! AGAGAAGGATTTATATAAAT+AGG + tig0036353:18922-18941 Msa1455560:intron 20.0%
!! GACAATAATAATGTAATCAT+TGG + tig0036353:19308-19327 Msa1455560:intron 20.0%
!! AATATAATATACATATCCAG+GGG - tig0036353:20011-20030 None:intergenic 20.0%
!! GAATATAATATACATATCCA+GGG - tig0036353:20012-20031 None:intergenic 20.0%
! ATGATGTTAATAGAGTTCAA+CGG + tig0036353:17998-18017 Msa1455560:CDS 25.0%
!!! GGACACTTTTTTTAGAAAAT+GGG - tig0036353:18439-18458 None:intergenic 25.0%
!!! TGAAATGGGTAAGTTATTTT+GGG - tig0036353:18460-18479 None:intergenic 25.0%
!! TTGAAATGGGTAAGTTATTT+TGG - tig0036353:18461-18480 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - tig0036353:18549-18568 None:intergenic 25.0%
! CAAAGTAGGTCAATTAAATT+GGG + tig0036353:18608-18627 Msa1455560:intron 25.0%
!! CGTGAATATCATTTTGTAAA+CGG - tig0036353:18791-18810 None:intergenic 25.0%
!!! TAAGTTGTTTTTGTTAGAGA+AGG + tig0036353:18907-18926 Msa1455560:intron 25.0%
!!! TTTTTTTTTTAGGGGAATAG+AGG - tig0036353:19009-19028 None:intergenic 25.0%
!!! AGTCGCAACTTTTTTTTTTA+GGG - tig0036353:19018-19037 None:intergenic 25.0%
!!! TTGATAAAAAGTGTTTTGGT+AGG - tig0036353:19156-19175 None:intergenic 25.0%
!!! TGCTTTGATAAAAAGTGTTT+TGG - tig0036353:19160-19179 None:intergenic 25.0%
! TTATTGTCAGACATTGTAAA+AGG - tig0036353:19296-19315 None:intergenic 25.0%
!! TTTAGACAATTTGAAATACC+CGG - tig0036353:19391-19410 None:intergenic 25.0%
!!! GTTTTGAATGAATTTGACTT+TGG - tig0036353:19415-19434 None:intergenic 25.0%
! GCATCATAATAAAATGTCTT+AGG - tig0036353:19708-19727 None:intergenic 25.0%
! TTTATTATGATGCACTAAAG+AGG + tig0036353:19715-19734 Msa1455560:CDS 25.0%
! TTATTATGATGCACTAAAGA+GGG + tig0036353:19716-19735 Msa1455560:CDS 25.0%
! AATGGCTTACAATATACATT+AGG - tig0036353:19953-19972 None:intergenic 25.0%
! GGAATATAATATACATATCC+AGG - tig0036353:20013-20032 None:intergenic 25.0%
!!! TATTTATTTTGCTACTTCCT+TGG + tig0036353:20133-20152 Msa1455560:three_prime_UTR 25.0%
!!! ATTTATTTTGCTACTTCCTT+GGG + tig0036353:20134-20153 Msa1455560:three_prime_UTR 25.0%
! GAACATGCAATGATAATAAA+AGG - tig0036353:20174-20193 None:intergenic 25.0%
AAGTGATGATATTGTTATCC+AGG - tig0036353:17572-17591 None:intergenic 30.0%
TCACTCAAATCAAACCAAAA+TGG + tig0036353:17615-17634 Msa1455560:CDS 30.0%
TGATGTTAATAGAGTTCAAC+GGG + tig0036353:17999-18018 Msa1455560:CDS 30.0%
TTACAGATGTTGAAAGATGA+AGG + tig0036353:18060-18079 Msa1455560:CDS 30.0%
TACAGATGTTGAAAGATGAA+GGG + tig0036353:18061-18080 Msa1455560:CDS 30.0%
TATATCACTAGCACAAACAA+CGG - tig0036353:18163-18182 None:intergenic 30.0%
! ATTGACTCCAAAACTTAGAT+AGG + tig0036353:18356-18375 Msa1455560:intron 30.0%
!!! GGGACACTTTTTTTAGAAAA+TGG - tig0036353:18440-18459 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - tig0036353:18564-18583 None:intergenic 30.0%
CCAATTTAATTGACCTACTT+TGG - tig0036353:18610-18629 None:intergenic 30.0%
CCAAAGTAGGTCAATTAAAT+TGG + tig0036353:18607-18626 Msa1455560:intron 30.0%
TGAATATCGTAGAACAATAG+CGG + tig0036353:18673-18692 Msa1455560:intron 30.0%
CAATTGATGTTTGCAAACAT+CGG - tig0036353:18818-18837 None:intergenic 30.0%
ATCATGTTAGAGGTTAGAAT+AGG + tig0036353:18868-18887 Msa1455560:intron 30.0%
TCATGTTAGAGGTTAGAATA+GGG + tig0036353:18869-18888 Msa1455560:intron 30.0%
!!! GTCGCAACTTTTTTTTTTAG+GGG - tig0036353:19017-19036 None:intergenic 30.0%
!!! GAGTCGCAACTTTTTTTTTT+AGG - tig0036353:19019-19038 None:intergenic 30.0%
TTCTGTTCCATTCAATTCTT+AGG + tig0036353:19110-19129 Msa1455560:intron 30.0%
GTCATGGGTCAAATTTAATA+GGG - tig0036353:19207-19226 None:intergenic 30.0%
TTCAAACACACAAACTAACA+CGG + tig0036353:19455-19474 Msa1455560:intron 30.0%
! CATACAAAAGCACACAAAAA+TGG - tig0036353:19971-19990 None:intergenic 30.0%
TGGCATGTAGTTTCAAATTT+GGG - tig0036353:20097-20116 None:intergenic 30.0%
AATATAATCGATGCATCAAC+TGG - tig0036353:20117-20136 None:intergenic 30.0%
GAATGCTATCTTATCTTTCC+TGG + tig0036353:17551-17570 Msa1455560:exon 35.0%
!!! CGAAACGGTTAGTTTTGTTT+GGG - tig0036353:17681-17700 None:intergenic 35.0%
!! GGTTGTTAAGAGTTTGTTGT+GGG - tig0036353:17731-17750 None:intergenic 35.0%
!! TGGTTGTTAAGAGTTTGTTG+TGG - tig0036353:17732-17751 None:intergenic 35.0%
TGATGACAAAGAAGTTGTGA+GGG + tig0036353:17921-17940 Msa1455560:CDS 35.0%
!! AGGGAGTATTTCAACAACAA+CGG + tig0036353:17940-17959 Msa1455560:CDS 35.0%
CAACGATGGAAGAAGATTTA+CGG + tig0036353:17967-17986 Msa1455560:CDS 35.0%
ATAGAGTTCAACGGGATATT+AGG + tig0036353:18007-18026 Msa1455560:CDS 35.0%
! TAAAGCATTCTCAACAGTCT+TGG - tig0036353:18043-18062 None:intergenic 35.0%
AGAGTTCAATTTACCGTATG+TGG + tig0036353:18296-18315 Msa1455560:intron 35.0%
CTAAAATAACGCTCCACATA+CGG - tig0036353:18312-18331 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - tig0036353:18426-18445 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + tig0036353:18594-18613 Msa1455560:intron 35.0%
GTAGGTCAATTAAATTGGGA+CGG + tig0036353:18612-18631 Msa1455560:intron 35.0%
!!! CAACTCATTTTGAAGTGGAA+GGG + tig0036353:18745-18764 Msa1455560:intron 35.0%
! TGTGTTAGGAAGCACAATTA+CGG - tig0036353:18849-18868 None:intergenic 35.0%
TTCCTAACACATCATGTTAG+AGG + tig0036353:18858-18877 Msa1455560:intron 35.0%
AACCTCTAACATGATGTGTT+AGG - tig0036353:18863-18882 None:intergenic 35.0%
TTGTGAAAGGGAAACCTTTA+AGG + tig0036353:19041-19060 Msa1455560:intron 35.0%
ATGAGAGAATCTCTCCTTAA+AGG - tig0036353:19058-19077 None:intergenic 35.0%
TTAGGGACCTAAGAATTGAA+TGG - tig0036353:19120-19139 None:intergenic 35.0%
GGTCATGGGTCAAATTTAAT+AGG - tig0036353:19208-19227 None:intergenic 35.0%
ATTAAATTTGACCCATGACC+AGG + tig0036353:19208-19227 Msa1455560:intron 35.0%
TTAAATTTGACCCATGACCA+GGG + tig0036353:19209-19228 Msa1455560:intron 35.0%
TGTCAGACATTGTAAAAGGA+GGG - tig0036353:19292-19311 None:intergenic 35.0%
TTGTCAGACATTGTAAAAGG+AGG - tig0036353:19293-19312 None:intergenic 35.0%
! AAGTGTGTTTTTCACTTTGC+AGG + tig0036353:19479-19498 Msa1455560:intron 35.0%
AAATCACTCACCACAAACTT+TGG - tig0036353:19552-19571 None:intergenic 35.0%
AGTGATTTAGAGAGTTTGGA+TGG + tig0036353:19564-19583 Msa1455560:CDS 35.0%
GGTAATGAATCATAACATCG+AGG - tig0036353:19611-19630 None:intergenic 35.0%
!! ATTCTGAAGCAGATGTTGAA+AGG + tig0036353:19787-19806 Msa1455560:CDS 35.0%
!! TTCTGAAGCAGATGTTGAAA+GGG + tig0036353:19788-19807 Msa1455560:CDS 35.0%
TTACTTTGCCAAGCTTATTG+AGG + tig0036353:19866-19885 Msa1455560:CDS 35.0%
! GGTAAGTTTTGCATCATTAG+AGG + tig0036353:19922-19941 Msa1455560:three_prime_UTR 35.0%
CTGGCATGTAGTTTCAAATT+TGG - tig0036353:20098-20117 None:intergenic 35.0%
TGCATGTTCTCAAAATGTCA+AGG + tig0036353:20185-20204 Msa1455560:three_prime_UTR 35.0%
AACAAAGAGAGAAGACCACA+TGG - tig0036353:17653-17672 None:intergenic 40.0%
!!! CGGTTAGTTTTGTTTGGGTT+TGG - tig0036353:17676-17695 None:intergenic 40.0%
!!! GCGAAACGGTTAGTTTTGTT+TGG - tig0036353:17682-17701 None:intergenic 40.0%
!! TGTTAAGAGTTTGTTGTGGG+CGG - tig0036353:17728-17747 None:intergenic 40.0%
GTGATGACAAAGAAGTTGTG+AGG + tig0036353:17920-17939 Msa1455560:CDS 40.0%
!! GGGAGTATTTCAACAACAAC+GGG + tig0036353:17941-17960 Msa1455560:CDS 40.0%
AGTTCAACGGGATATTAGGT+TGG + tig0036353:18011-18030 Msa1455560:CDS 40.0%
GTTCAACGGGATATTAGGTT+GGG + tig0036353:18012-18031 Msa1455560:CDS 40.0%
CAAATAGTAACACCCTGAAG+TGG - tig0036353:18087-18106 None:intergenic 40.0%
!! GGTGTTACTATTTGTGATGC+TGG + tig0036353:18093-18112 Msa1455560:CDS 40.0%
! ACTATTTGTGATGCTGGTTG+TGG + tig0036353:18099-18118 Msa1455560:CDS 40.0%
TAGTGATATATCAGCTGCCA+TGG + tig0036353:18173-18192 Msa1455560:CDS 40.0%
GAAAATGGGTCAGTTATTCC+GGG - tig0036353:18425-18444 None:intergenic 40.0%
GTAGCTGTTATTCGACAACA+CGG + tig0036353:18640-18659 Msa1455560:intron 40.0%
!! GCTTGCAACTCATTTTGAAG+TGG + tig0036353:18740-18759 Msa1455560:intron 40.0%
!!! GCAACTCATTTTGAAGTGGA+AGG + tig0036353:18744-18763 Msa1455560:intron 40.0%
AGTTGCGACTCTATTGTGAA+AGG + tig0036353:19028-19047 Msa1455560:intron 40.0%
GTTGCGACTCTATTGTGAAA+GGG + tig0036353:19029-19048 Msa1455560:intron 40.0%
CCAGACAAATTTGGTCTCTA+AGG - tig0036353:19240-19259 None:intergenic 40.0%
CCTTAGAGACCAAATTTGTC+TGG + tig0036353:19237-19256 Msa1455560:intron 40.0%
GAACACACACCAGACAAATT+TGG - tig0036353:19249-19268 None:intergenic 40.0%
GTCAGACATTGTAAAAGGAG+GGG - tig0036353:19291-19310 None:intergenic 40.0%
CTTTCAGGATCAGAACTAAG+GGG - tig0036353:19346-19365 None:intergenic 40.0%
CCTTTCAGGATCAGAACTAA+GGG - tig0036353:19347-19366 None:intergenic 40.0%
CAACTTGTGTCCAGTGAAAA+TGG + tig0036353:19510-19529 Msa1455560:CDS 40.0%
GGTGAGTGATTTAGAGAGTT+TGG + tig0036353:19560-19579 Msa1455560:CDS 40.0%
TATGATGCACTAAAGAGGGT+TGG + tig0036353:19720-19739 Msa1455560:CDS 40.0%
TTCAGAATGAAGATATGCCC+TGG - tig0036353:19775-19794 None:intergenic 40.0%
AAACTTACCTCTGAATCCTC+TGG - tig0036353:19911-19930 None:intergenic 40.0%
TATGTTATCCTATGATCCCC+TGG + tig0036353:19992-20011 Msa1455560:three_prime_UTR 40.0%
ATACATATCCAGGGGATCAT+AGG - tig0036353:20003-20022 None:intergenic 40.0%
CAGCATCATTTACGCTAAGA+AGG - tig0036353:20034-20053 None:intergenic 40.0%
! TGCTTTTCCCTGATTCTCGT+GGG - tig0036353:17523-17542 None:intergenic 45.0%
! ATGCTTTTCCCTGATTCTCG+TGG - tig0036353:17524-17543 None:intergenic 45.0%
ACGAGAATCAGGGAAAAGCA+TGG + tig0036353:17523-17542 Msa1455560:five_prime_UTR 45.0%
! TGAGAGTGTGAGTGTGAGTT+GGG - tig0036353:17598-17617 None:intergenic 45.0%
! GGATGATGAGAACGCCATTT+TGG - tig0036353:17632-17651 None:intergenic 45.0%
AGGGAGAGAATGTAGCGAAA+CGG - tig0036353:17696-17715 None:intergenic 45.0%
! ACAACAACGGGTTTCAACGA+TGG + tig0036353:17953-17972 Msa1455560:CDS 45.0%
AAAGATGAAGGGCCACTTCA+GGG + tig0036353:18072-18091 Msa1455560:CDS 45.0%
TGGTTCTCTTTCGATTCCGT+TGG + tig0036353:18125-18144 Msa1455560:CDS 45.0%
TTTCTCAGCTTCAGCAACCA+TGG - tig0036353:18193-18212 None:intergenic 45.0%
GGTCAATTAAATTGGGACGG+AGG + tig0036353:18615-18634 Msa1455560:intron 45.0%
GGAAGATTATGGAGTCAGAG+AGG + tig0036353:18943-18962 Msa1455560:intron 45.0%
TAGGCACGAATGGCATGTTA+GGG - tig0036353:19137-19156 None:intergenic 45.0%
!!! AGTGTTTTGGTAGGCACGAA+TGG - tig0036353:19147-19166 None:intergenic 45.0%
TAAGGTTTCACCCTGGTCAT+GGG - tig0036353:19222-19241 None:intergenic 45.0%
GGTGTGTGTTCTGTCAACTA+AGG + tig0036353:19258-19277 Msa1455560:intron 45.0%
!! CCCTTAGTTCTGATCCTGAA+AGG + tig0036353:19344-19363 Msa1455560:intron 45.0%
GCCTTTCAGGATCAGAACTA+AGG - tig0036353:19348-19367 None:intergenic 45.0%
! AGGTGACACTCCATTTTCAC+TGG - tig0036353:19523-19542 None:intergenic 45.0%
!! GGATGGATTGTACGATACAG+TGG + tig0036353:19581-19600 Msa1455560:CDS 45.0%
TACCCTCAGAGTAAAGCAGA+TGG + tig0036353:19627-19646 Msa1455560:CDS 45.0%
ACCCTCAGAGTAAAGCAGAT+GGG + tig0036353:19628-19647 Msa1455560:CDS 45.0%
TCCCATCTGCTTTACTCTGA+GGG - tig0036353:19632-19651 None:intergenic 45.0%
ATCCCATCTGCTTTACTCTG+AGG - tig0036353:19633-19652 None:intergenic 45.0%
GATTGCTCACCTTGCTTCTT+TGG + tig0036353:19653-19672 Msa1455560:CDS 45.0%
! GCTTTTCTGCCAAAGAAGCA+AGG - tig0036353:19665-19684 None:intergenic 45.0%
GGGTGGACGATAAAGAAGAA+AGG + tig0036353:19825-19844 Msa1455560:CDS 45.0%
AGGAACAGCCTCAATAAGCT+TGG - tig0036353:19877-19896 None:intergenic 45.0%
TTCCTATGTAGTGAGTCCAG+AGG + tig0036353:19892-19911 Msa1455560:exon 45.0%
ATCCTCTGGACTCACTACAT+AGG - tig0036353:19897-19916 None:intergenic 45.0%
GGCAGAAAATTCATCACCCA+AGG - tig0036353:20153-20172 None:intergenic 45.0%
AAGTAGGACCCACGAGAATC+AGG + tig0036353:17512-17531 Msa1455560:five_prime_UTR 50.0%
AGTAGGACCCACGAGAATCA+GGG + tig0036353:17513-17532 Msa1455560:five_prime_UTR 50.0%
! GTGAGAGTGTGAGTGTGAGT+TGG - tig0036353:17599-17618 None:intergenic 50.0%
TGGCGTTCTCATCATCCATG+TGG + tig0036353:17635-17654 Msa1455560:CDS 50.0%
!! TAAGAGTTTGTTGTGGGCGG+CGG - tig0036353:17725-17744 None:intergenic 50.0%
CATAGACGGCACAACAATCG+CGG + tig0036353:17804-17823 Msa1455560:CDS 50.0%
ACAACAATCGCGGTCGTAAG+CGG + tig0036353:17814-17833 Msa1455560:CDS 50.0%
GTCTGAAAGGGAGAGAAGTG+CGG - tig0036353:17860-17879 None:intergenic 50.0%
ACTTCTCTCCCTTTCAGACC+CGG + tig0036353:17861-17880 Msa1455560:CDS 50.0%
TCGTCTTTCCGGGTCTGAAA+GGG - tig0036353:17872-17891 None:intergenic 50.0%
GAAAGATGAAGGGCCACTTC+AGG + tig0036353:18071-18090 Msa1455560:CDS 50.0%
! TGTGATGCTGGTTGTGGTAC+TGG + tig0036353:18105-18124 Msa1455560:CDS 50.0%
TCTTTCGATTCCGTTGGCCA+AGG + tig0036353:18131-18150 Msa1455560:CDS 50.0%
ACAAACAACGGCACCTTCCT+TGG - tig0036353:18151-18170 None:intergenic 50.0%
GGTTGCTGAAGCTGAGAAAC+AGG + tig0036353:18194-18213 Msa1455560:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - tig0036353:18421-18440 None:intergenic 50.0%
GTAGGCACGAATGGCATGTT+AGG - tig0036353:19138-19157 None:intergenic 50.0%
CTAAGGTTTCACCCTGGTCA+TGG - tig0036353:19223-19242 None:intergenic 50.0%
!! TGGTCTCTAAGGTTTCACCC+TGG - tig0036353:19229-19248 None:intergenic 50.0%
ACCTGCGATGCCAAAGTTTG+TGG + tig0036353:19539-19558 Msa1455560:CDS 50.0%
ACCACAAACTTTGGCATCGC+AGG - tig0036353:19543-19562 None:intergenic 50.0%
AAGATATGCCCTGGTTGCCT+TGG - tig0036353:19766-19785 None:intergenic 50.0%
AGTGAGTCCAGAGGATTCAG+AGG + tig0036353:19901-19920 Msa1455560:exon 50.0%
!! AAGAGTTTGTTGTGGGCGGC+GGG - tig0036353:17724-17743 None:intergenic 55.0%
CTGTTGCGGTTGAGAGTGGA+GGG - tig0036353:17765-17784 None:intergenic 55.0%
CGCGATTGTTGTGCCGTCTA+TGG - tig0036353:17806-17825 None:intergenic 55.0%
! AAAGGGAGAGAAGTGCGGTG+AGG - tig0036353:17855-17874 None:intergenic 55.0%
GTCGTCTTTCCGGGTCTGAA+AGG - tig0036353:17873-17892 None:intergenic 55.0%
TGTTCGCGTCGTCGTCTTTC+CGG - tig0036353:17883-17902 None:intergenic 55.0%
TCGATTCCGTTGGCCAAGGA+AGG + tig0036353:18135-18154 Msa1455560:CDS 55.0%
ACATCATACTCCCTCCGTCC+CGG + tig0036353:18404-18423 Msa1455560:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - tig0036353:18417-18436 None:intergenic 55.0%
TCCTGAAAGGCGAAAGAGCC+CGG + tig0036353:19357-19376 Msa1455560:intron 55.0%
AAATACCCGGATCTTGCGCC+GGG - tig0036353:19378-19397 None:intergenic 55.0%
GAAATACCCGGATCTTGCGC+CGG - tig0036353:19379-19398 None:intergenic 55.0%
AGGGTTGGAGAGTTGTTCCC+TGG + tig0036353:19735-19754 Msa1455560:CDS 55.0%
GGGTTGGAGAGTTGTTCCCT+GGG + tig0036353:19736-19755 Msa1455560:CDS 55.0%
TATGCCCTGGTTGCCTTGGA+AGG - tig0036353:19762-19781 None:intergenic 55.0%
!! TGTTGAAAGGGCGTTGCGCA+AGG + tig0036353:19800-19819 Msa1455560:CDS 55.0%
!! AAAGGGCGTTGCGCAAGGTT+GGG + tig0036353:19805-19824 Msa1455560:CDS 55.0%
GAGTGGAGGGATGGCGAATG+TGG - tig0036353:17752-17771 None:intergenic 60.0%
TGCGGTTGAGAGTGGAGGGA+TGG - tig0036353:17761-17780 None:intergenic 60.0%
GCTGTTGCGGTTGAGAGTGG+AGG - tig0036353:17766-17785 None:intergenic 60.0%
!! GTCTATGGCGCCGGTAACGT+CGG - tig0036353:17791-17810 None:intergenic 60.0%
GACGTTACCGGCGCCATAGA+CGG + tig0036353:17790-17809 Msa1455560:CDS 60.0%
TGTTGTGCCGTCTATGGCGC+CGG - tig0036353:17800-17819 None:intergenic 60.0%
ACAATCGCGGTCGTAAGCGG+TGG + tig0036353:17817-17836 Msa1455560:CDS 60.0%
GTTCGCGTCGTCGTCTTTCC+GGG - tig0036353:17882-17901 None:intergenic 60.0%
GGAAAGACGACGACGCGAAC+AGG + tig0036353:17882-17901 Msa1455560:CDS 60.0%
AAGACGACGACGCGAACAGG+CGG + tig0036353:17885-17904 Msa1455560:CDS 60.0%
GAACAGGCGGAGGAAGTAGG+CGG + tig0036353:17898-17917 Msa1455560:CDS 60.0%
ACGGCACCTTCCTTGGCCAA+CGG - tig0036353:18144-18163 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - tig0036353:18418-18437 None:intergenic 60.0%
AAAGAGCCCGGCGCAAGATC+CGG + tig0036353:19369-19388 Msa1455560:intron 60.0%
GTTGTTCCCTGGGCCTTCCA+AGG + tig0036353:19746-19765 Msa1455560:CDS 60.0%
TGGTTGCCTTGGAAGGCCCA+GGG - tig0036353:19755-19774 None:intergenic 60.0%
TGGGCCTTCCAAGGCAACCA+GGG + tig0036353:19755-19774 Msa1455560:CDS 60.0%
!! GAAAGGGCGTTGCGCAAGGT+TGG + tig0036353:19804-19823 Msa1455560:CDS 60.0%
! TTTGTTGTGGGCGGCGGGAG+AGG - tig0036353:17719-17738 None:intergenic 65.0%
GCGGCTGTTGCGGTTGAGAG+TGG - tig0036353:17769-17788 None:intergenic 65.0%
GGTAACGTCGGCGGCTGTTG+CGG - tig0036353:17779-17798 None:intergenic 65.0%
GCAACAGCCGCCGACGTTAC+CGG + tig0036353:17778-17797 Msa1455560:CDS 65.0%
!! TATGGCGCCGGTAACGTCGG+CGG - tig0036353:17788-17807 None:intergenic 65.0%
GTAAGCGGTGGCTTCGTCGC+TGG + tig0036353:17829-17848 Msa1455560:CDS 65.0%
CGCGAACAGGCGGAGGAAGT+AGG + tig0036353:17895-17914 Msa1455560:CDS 65.0%
GCCGGGCTCTTTCGCCTTTC+AGG - tig0036353:19361-19380 None:intergenic 65.0%
AAGAGCCCGGCGCAAGATCC+GGG + tig0036353:19370-19389 Msa1455560:intron 65.0%
CTGGTTGCCTTGGAAGGCCC+AGG - tig0036353:19756-19775 None:intergenic 65.0%
CTGGGCCTTCCAAGGCAACC+AGG + tig0036353:19754-19773 Msa1455560:CDS 65.0%
TTGTGGGCGGCGGGAGAGGA+GGG - tig0036353:17715-17734 None:intergenic 70.0%
ACGACGACGCGAACAGGCGG+AGG + tig0036353:17888-17907 Msa1455560:CDS 70.0%
! GGGCGTTGCGCAAGGTTGGG+TGG + tig0036353:19808-19827 Msa1455560:CDS 70.0%
GTTGTGGGCGGCGGGAGAGG+AGG - tig0036353:17716-17735 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0036353 gene 17509 20231 17509 ID=Msa1455560;Name=Msa1455560
tig0036353 mRNA 17509 20231 17509 ID=Msa1455560-mRNA-1;Parent=Msa1455560;Name=Msa1455560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=44|1|1|1|1|1|2|329|354
tig0036353 exon 17509 18215 17509 ID=Msa1455560-mRNA-1:exon:20317;Parent=Msa1455560-mRNA-1
tig0036353 exon 19501 20231 19501 ID=Msa1455560-mRNA-1:exon:20318;Parent=Msa1455560-mRNA-1
tig0036353 five_prime_UTR 17509 17552 17509 ID=Msa1455560-mRNA-1:five_prime_utr;Parent=Msa1455560-mRNA-1
tig0036353 CDS 17553 18215 17553 ID=Msa1455560-mRNA-1:cds;Parent=Msa1455560-mRNA-1
tig0036353 CDS 19501 19902 19501 ID=Msa1455560-mRNA-1:cds;Parent=Msa1455560-mRNA-1
tig0036353 three_prime_UTR 19903 20231 19903 ID=Msa1455560-mRNA-1:three_prime_utr;Parent=Msa1455560-mRNA-1
Gene Sequence

>Msa1455560

ATGCTATCTTATCTTTCCTGGATAACAATATCATCACTTCAACCCAACTCACACTCACACTCTCACTCAAATCAAACCAAAATGGCGTTCTCATCATCCATGTGGTCTTCTCTCTTTGTTCCAAACCCAAACAAAACTAACCGTTTCGCTACATTCTCTCCCTCCTCTCCCGCCGCCCACAACAAACTCTTAACAACCACATTCGCCATCCCTCCACTCTCAACCGCAACAGCCGCCGACGTTACCGGCGCCATAGACGGCACAACAATCGCGGTCGTAAGCGGTGGCTTCGTCGCTGGCCTCACCGCACTTCTCTCCCTTTCAGACCCGGAAAGACGACGACGCGAACAGGCGGAGGAAGTAGGCGGTGATGACAAAGAAGTTGTGAGGGAGTATTTCAACAACAACGGGTTTCAACGATGGAAGAAGATTTACGGTGATACTGATGATGTTAATAGAGTTCAACGGGATATTAGGTTGGGACATTCCAAGACTGTTGAGAATGCTTTACAGATGTTGAAAGATGAAGGGCCACTTCAGGGTGTTACTATTTGTGATGCTGGTTGTGGTACTGGTTCTCTTTCGATTCCGTTGGCCAAGGAAGGTGCCGTTGTTTGTGCTAGTGATATATCAGCTGCCATGGTTGCTGAAGCTGAGAAACAGGCAAAAGAACAACTTGTGTCCAGTGAAAATGGAGTGTCACCTGCGATGCCAAAGTTTGTGGTGAGTGATTTAGAGAGTTTGGATGGATTGTACGATACAGTGGTGTGCCTCGATGTTATGATTCATTACCCTCAGAGTAAAGCAGATGGGATGATTGCTCACCTTGCTTCTTTGGCAGAAAAGCGATTGATTCTGAGCTTTGCACCTAAGACATTTTATTATGATGCACTAAAGAGGGTTGGAGAGTTGTTCCCTGGGCCTTCCAAGGCAACCAGGGCATATCTTCATTCTGAAGCAGATGTTGAAAGGGCGTTGCGCAAGGTTGGGTGGACGATAAAGAAGAAAGGCTTAATCGCTACTCAATTTTACTTTGCCAAGCTTATTGAGGCTGTTCCTATGTAG

Protein sequence

>Msa1455560

MLSYLSWITISSLQPNSHSHSHSNQTKMAFSSSMWSSLFVPNPNKTNRFATFSPSSPAAHNKLLTTTFAIPPLSTATAADVTGAIDGTTIAVVSGGFVAGLTALLSLSDPERRRREQAEEVGGDDKEVVREYFNNNGFQRWKKIYGDTDDVNRVQRDIRLGHSKTVENALQMLKDEGPLQGVTICDAGCGTGSLSIPLAKEGAVVCASDISAAMVAEAEKQAKEQLVSSENGVSPAMPKFVVSDLESLDGLYDTVVCLDVMIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDALKRVGELFPGPSKATRAYLHSEADVERALRKVGWTIKKKGLIATQFYFAKLIEAVPM*