AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519100 MtrunA17_Chr3g0131541 96.226 212 8 0 1 212 1 212 8.97e-156 429
Msa0519100 MtrunA17_Chr3g0131551 75.688 218 45 3 1 212 7 222 3.06e-120 340
Msa0519100 MtrunA17_Chr8g0385631 64.216 204 70 2 1 202 1 203 3.28e-93 271
Msa0519100 MtrunA17_Chr8g0385601 69.474 190 53 3 1 186 1 189 1.03e-92 270
Msa0519100 MtrunA17_Chr8g0385611 62.025 158 57 3 1 156 1 157 1.56e-63 194
Msa0519100 MtrunA17_Chr8g0385621 60.000 40 16 0 160 199 4 43 4.46e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519100 AT3G23760.1 63.684 190 61 3 7 190 7 194 2.03e-86 254
Msa0519100 AT4G14100.1 64.516 186 56 3 14 191 7 190 4.68e-85 251

Find 87 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATTGATGTTAATATT+TGG 0.214223 3_4:+71029223 None:intergenic
CTTGATGGTGCTACCTATTT+AGG 0.222154 3_4:-71029962 Msa0519100:CDS
GTTTCCATTATTGTTGGGTT+AGG 0.253401 3_4:-71030521 Msa0519100:five_prime_UTR
CTCCGTCCTAATTGGCTTGA+TGG 0.262701 3_4:-71029977 Msa0519100:CDS
AAGCGGATCCCTACAGAAAT+TGG 0.272446 3_4:-71030164 Msa0519100:CDS
CAAAATTTGATTTATGAGTT+TGG 0.276437 3_4:+71029161 None:intergenic
ATAAGAATTTGATGAATGTT+AGG 0.281121 3_4:+71030359 None:intergenic
TCCGGCCAAGCTGCCGGAAC+TGG 0.316253 3_4:+71030217 None:intergenic
CCCTACAGAAATTGGACTTA+TGG 0.330831 3_4:-71030156 Msa0519100:CDS
AACTTGTTCTTGACCTAAAT+AGG 0.332003 3_4:+71029949 None:intergenic
ATAATTTCCTATGTAATGTT+TGG 0.333466 3_4:-71029925 Msa0519100:CDS
TGGGAAATAATGAACTGAAT+TGG 0.344867 3_4:-71029115 Msa0519100:three_prime_UTR
TGCAATAGAACACACCTTTA+CGG 0.348173 3_4:-71030287 Msa0519100:CDS
ACTGTTCGTGGCGATTCTTT+TGG 0.354532 3_4:-71029360 Msa0519100:CDS
TTGTAGGGATGGATGCAATA+TGG 0.358518 3_4:-71029191 Msa0519100:three_prime_UTR
TCTCCCTAACCCAACAATAA+TGG 0.359573 3_4:+71030517 None:intergenic
CAATATCATTGAGTTGATCT+TGG 0.360877 3_4:+71030098 None:intergenic
TTGTAGATTACGACCTTGAA+TGG 0.361181 3_4:-71030078 Msa0519100:CDS
TTGGTATTCTCCGTCCTAAT+TGG 0.369794 3_4:-71029985 Msa0519100:CDS
GTAGCACCATCAAGCCAATT+AGG 0.370390 3_4:+71029971 None:intergenic
TAATTTCCTATGTAATGTTT+GGG 0.374401 3_4:-71029924 Msa0519100:CDS
TTTCCATTATTGTTGGGTTA+GGG 0.386965 3_4:-71030520 Msa0519100:five_prime_UTR
CTCGACGGCGGAGCCAGTTC+CGG 0.389600 3_4:-71030230 Msa0519100:CDS
TAAGAATTTGATGAATGTTA+GGG 0.417757 3_4:+71030360 None:intergenic
GCCAGTTCCGGCAGCTTGGC+CGG 0.421754 3_4:-71030218 Msa0519100:CDS
AGTCAGAAACTGTACCCATT+TGG 0.422571 3_4:+71030471 None:intergenic
GGCTAAACTAAACAATCATT+CGG 0.422742 3_4:+71029244 None:intergenic
ATTATGTTTCCATTATTGTT+GGG 0.439396 3_4:-71030526 Msa0519100:five_prime_UTR
GTGTAGAAGATCCACTTAAC+AGG 0.441540 3_4:+71029854 None:intergenic
AACTGCTCCGGCCAAGCTGC+CGG 0.446630 3_4:+71030211 None:intergenic
TTAGAATCTGCTACTGTTCG+TGG 0.447496 3_4:-71029372 Msa0519100:CDS
ATGTTGAAGTTTCGACCGTT+GGG 0.451295 3_4:+71030124 None:intergenic
GTCTGATTGAAGCAGTATAC+AGG 0.464973 3_4:+71029405 None:intergenic
AATTATGTTTCCATTATTGT+TGG 0.466033 3_4:-71030527 Msa0519100:five_prime_UTR
GAGTAGTACCGTTACCGTAA+AGG 0.468001 3_4:+71030273 None:intergenic
TGCAGTGGCGGTCGGAGGGA+TGG 0.474901 3_4:+71030026 None:intergenic
CAATCATTCGGAAATACATT+GGG 0.476022 3_4:+71029256 None:intergenic
AGGTTCCATTGGTCCATTCA+AGG 0.477181 3_4:+71030065 None:intergenic
CCATCATCATCTTGTAGGGA+TGG 0.483050 3_4:-71029202 Msa0519100:three_prime_UTR
ACAATCATTCGGAAATACAT+TGG 0.484270 3_4:+71029255 None:intergenic
CTTTCTCCCAAACATTACAT+AGG 0.489592 3_4:+71029918 None:intergenic
GATGTTGAAGTTTCGACCGT+TGG 0.491687 3_4:+71030123 None:intergenic
GTTAAGTGGATCTTCTACAC+TGG 0.500811 3_4:-71029851 Msa0519100:intron
CGGAGCCAGTTCCGGCAGCT+TGG 0.510708 3_4:-71030222 Msa0519100:CDS
AACCTTGCAGTGGCGGTCGG+AGG 0.511934 3_4:+71030021 None:intergenic
GCTGTTATGAGTAATCCAAA+TGG 0.512863 3_4:-71030486 Msa0519100:five_prime_UTR
ACCTTGCAGTGGCGGTCGGA+GGG 0.512978 3_4:+71030022 None:intergenic
TGTTGGAGATTTATCTAAGA+GGG 0.513539 3_4:+71030614 None:intergenic
CTGTTATGAGTAATCCAAAT+GGG 0.513860 3_4:-71030485 Msa0519100:five_prime_UTR
AAGAATTTGATGAATGTTAG+GGG 0.525802 3_4:+71030361 None:intergenic
ACCATAAGTCCAATTTCTGT+AGG 0.527172 3_4:+71030155 None:intergenic
TTGTTGGAGATTTATCTAAG+AGG 0.527917 3_4:+71030613 None:intergenic
TCACTCGAAGGCCTGTTAAG+TGG 0.539058 3_4:-71029865 Msa0519100:CDS
AATTGGACTTATGGTATGAC+TGG 0.542047 3_4:-71030147 Msa0519100:CDS
GACAACCTTGCAGTGGCGGT+CGG 0.543354 3_4:+71030018 None:intergenic
TGCTCATGTGATGACATTTG+AGG 0.548966 3_4:-71029463 Msa0519100:CDS
GCTTGAGGATGTGCATTGGC+AGG 0.549400 3_4:-71029430 Msa0519100:CDS
TCCCTCCGACCGCCACTGCA+AGG 0.553601 3_4:-71030023 Msa0519100:CDS
GTACATGAAGGAGGTTCCAT+TGG 0.555646 3_4:+71030054 None:intergenic
CCATCCCTACAAGATGATGA+TGG 0.555996 3_4:+71029202 None:intergenic
GCTTCTGTTCATGAATAGTA+CGG 0.566725 3_4:+71030183 None:intergenic
CCATAAGTCCAATTTCTGTA+GGG 0.573008 3_4:+71030156 None:intergenic
CATGGACAACCTTGCAGTGG+CGG 0.573319 3_4:+71030014 None:intergenic
AGTACGGAATGAAACTGCTC+CGG 0.575238 3_4:+71030199 None:intergenic
TTATGGTATGACTGGCCCAA+CGG 0.590284 3_4:-71030139 Msa0519100:CDS
AGAACACACCTTTACGGTAA+CGG 0.593520 3_4:-71030281 Msa0519100:CDS
CATGTGATGACATTTGAGGT+TGG 0.595333 3_4:-71029459 Msa0519100:CDS
AAGGTTGTCCATGTTGAAGT+TGG 0.595989 3_4:-71030004 Msa0519100:CDS
GTGGACAAATCTTGAGAGAG+TGG 0.601331 3_4:-71030407 Msa0519100:five_prime_UTR
ATGAAGATGTTCTCACTCGA+AGG 0.605789 3_4:-71029877 Msa0519100:CDS
CACCATCAAGCCAATTAGGA+CGG 0.609769 3_4:+71029975 None:intergenic
TGAGGTTGGAGCAGTGCTTG+AGG 0.612681 3_4:-71029445 Msa0519100:CDS
GTTGTTGAAAGCAGCAGCAA+TGG 0.616146 3_4:-71030314 Msa0519100:exon
AGAATTTGATGAATGTTAGG+GGG 0.619442 3_4:+71030362 None:intergenic
TACGACCTTGAATGGACCAA+TGG 0.624357 3_4:-71030070 Msa0519100:CDS
AAAGGTGTGTTCTATTGCAG+AGG 0.630711 3_4:+71030291 None:intergenic
GTACTATTCATGAACAGAAG+CGG 0.639978 3_4:-71030181 Msa0519100:CDS
GGGATGGAGAGTGTACATGA+AGG 0.647111 3_4:+71030042 None:intergenic
CAGTGCTTGAGGATGTGCAT+TGG 0.659088 3_4:-71029434 Msa0519100:CDS
ATGGAGAGTGTACATGAAGG+AGG 0.663920 3_4:+71030045 None:intergenic
GGAGAATACCAACTTCAACA+TGG 0.664515 3_4:+71029996 None:intergenic
TCTCTTCTCACTCTCGACGG+CGG 0.673727 3_4:-71030242 Msa0519100:CDS
CAACATGGACAACCTTGCAG+TGG 0.677545 3_4:+71030011 None:intergenic
CGTTCTCTTCTCACTCTCGA+CGG 0.680397 3_4:-71030245 Msa0519100:CDS
CTACACAGAAATGTGACACG+TGG 0.692435 3_4:-71030437 Msa0519100:five_prime_UTR
CGAGAGTGAGAAGAGAACGA+CGG 0.697861 3_4:+71030249 None:intergenic
TGTGACACGTGGTTTCACAG+TGG 0.741626 3_4:-71030426 Msa0519100:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATGAAGTTTTAGTTT+TGG + chr3_4:71029150-71029169 None:intergenic 15.0%
!!! TTAAAATGAAGTTTTAGTTT+TGG + chr3_4:71029150-71029169 None:intergenic 15.0%
!! AATTATGTTTCCATTATTGT+TGG - chr3_4:71029177-71029196 Msa0519100:three_prime_UTR 20.0%
!! ATTATGTTTCCATTATTGTT+GGG - chr3_4:71029178-71029197 Msa0519100:three_prime_UTR 20.0%
!! TAAGAATTTGATGAATGTTA+GGG + chr3_4:71029347-71029366 None:intergenic 20.0%
!! ATAAGAATTTGATGAATGTT+AGG + chr3_4:71029348-71029367 None:intergenic 20.0%
!! ATAATTTCCTATGTAATGTT+TGG - chr3_4:71029779-71029798 Msa0519100:intron 20.0%
!! TAATTTCCTATGTAATGTTT+GGG - chr3_4:71029780-71029799 Msa0519100:intron 20.0%
!! CTTATATGATAACAATTTGT+CGG - chr3_4:71029997-71030016 Msa0519100:CDS 20.0%
!! TGATAAACTAATAAGTTCAA+GGG + chr3_4:71030104-71030123 None:intergenic 20.0%
!! ATGATAAACTAATAAGTTCA+AGG + chr3_4:71030105-71030124 None:intergenic 20.0%
!! GGAAAATTGATGTTAATATT+TGG + chr3_4:71030484-71030503 None:intergenic 20.0%
!!! CAAAATTTGATTTATGAGTT+TGG + chr3_4:71030546-71030565 None:intergenic 20.0%
!! AATTATGTTTCCATTATTGT+TGG - chr3_4:71029177-71029196 Msa0519100:three_prime_UTR 20.0%
!! ATTATGTTTCCATTATTGTT+GGG - chr3_4:71029178-71029197 Msa0519100:three_prime_UTR 20.0%
!! TAAGAATTTGATGAATGTTA+GGG + chr3_4:71029347-71029366 None:intergenic 20.0%
!! ATAAGAATTTGATGAATGTT+AGG + chr3_4:71029348-71029367 None:intergenic 20.0%
!! ATAATTTCCTATGTAATGTT+TGG - chr3_4:71029779-71029798 Msa0519100:intron 20.0%
!! TAATTTCCTATGTAATGTTT+GGG - chr3_4:71029780-71029799 Msa0519100:intron 20.0%
!! CTTATATGATAACAATTTGT+CGG - chr3_4:71029997-71030016 Msa0519100:CDS 20.0%
!! TGATAAACTAATAAGTTCAA+GGG + chr3_4:71030104-71030123 None:intergenic 20.0%
!! ATGATAAACTAATAAGTTCA+AGG + chr3_4:71030105-71030124 None:intergenic 20.0%
!! GGAAAATTGATGTTAATATT+TGG + chr3_4:71030484-71030503 None:intergenic 20.0%
!!! CAAAATTTGATTTATGAGTT+TGG + chr3_4:71030546-71030565 None:intergenic 20.0%
!!! TCCAACAAATGTTTTTACTT+AGG - chr3_4:71029106-71029125 Msa0519100:three_prime_UTR 25.0%
!!! GAAGTTTTAGTTTTGGTTTA+AGG + chr3_4:71029143-71029162 None:intergenic 25.0%
! AAGAATTTGATGAATGTTAG+GGG + chr3_4:71029346-71029365 None:intergenic 25.0%
!!! TTTGGATTCATTGACTTATT+TGG - chr3_4:71029917-71029936 Msa0519100:CDS 25.0%
! TGAATTAAGGTTTGATATAC+TGG - chr3_4:71030199-71030218 Msa0519100:CDS 25.0%
!!! TCCAACAAATGTTTTTACTT+AGG - chr3_4:71029106-71029125 Msa0519100:three_prime_UTR 25.0%
!!! GAAGTTTTAGTTTTGGTTTA+AGG + chr3_4:71029143-71029162 None:intergenic 25.0%
! AAGAATTTGATGAATGTTAG+GGG + chr3_4:71029346-71029365 None:intergenic 25.0%
!!! TTTGGATTCATTGACTTATT+TGG - chr3_4:71029917-71029936 Msa0519100:CDS 25.0%
! TGAATTAAGGTTTGATATAC+TGG - chr3_4:71030199-71030218 Msa0519100:CDS 25.0%
TTGTTGGAGATTTATCTAAG+AGG + chr3_4:71029094-71029113 None:intergenic 30.0%
GCCTAAGTAAAAACATTTGT+TGG + chr3_4:71029110-71029129 None:intergenic 30.0%
TTTCCATTATTGTTGGGTTA+GGG - chr3_4:71029184-71029203 Msa0519100:three_prime_UTR 30.0%
CTGTTATGAGTAATCCAAAT+GGG - chr3_4:71029219-71029238 Msa0519100:three_prime_UTR 30.0%
!!! GGAAATTTCATTTTGGGTTT+GGG + chr3_4:71029324-71029343 None:intergenic 30.0%
! TTAGGGGGAAATTTCATTTT+GGG + chr3_4:71029330-71029349 None:intergenic 30.0%
AGAATTTGATGAATGTTAGG+GGG + chr3_4:71029345-71029364 None:intergenic 30.0%
!! CAATATCATTGAGTTGATCT+TGG + chr3_4:71029609-71029628 None:intergenic 30.0%
! AACTTGTTCTTGACCTAAAT+AGG + chr3_4:71029758-71029777 None:intergenic 30.0%
AATGAATCCAAACAGTAACT+AGG + chr3_4:71029909-71029928 None:intergenic 30.0%
CATTCCTGTGAAATGAATTA+AGG - chr3_4:71030186-71030205 Msa0519100:CDS 30.0%
CAAACCTTAATTCATTTCAC+AGG + chr3_4:71030193-71030212 None:intergenic 30.0%
GATATACTGGTAATTAATGC+AGG - chr3_4:71030212-71030231 Msa0519100:CDS 30.0%
CAATCATTCGGAAATACATT+GGG + chr3_4:71030451-71030470 None:intergenic 30.0%
ACAATCATTCGGAAATACAT+TGG + chr3_4:71030452-71030471 None:intergenic 30.0%
GGCTAAACTAAACAATCATT+CGG + chr3_4:71030463-71030482 None:intergenic 30.0%
! ATTTTCCATCATCATCTTGT+AGG - chr3_4:71030497-71030516 Msa0519100:five_prime_UTR 30.0%
! TTTTCCATCATCATCTTGTA+GGG - chr3_4:71030498-71030517 Msa0519100:five_prime_UTR 30.0%
!! CTCAGCTATCTTTTACTTTT+GGG - chr3_4:71030570-71030589 Msa0519100:five_prime_UTR 30.0%
TGGGAAATAATGAACTGAAT+TGG - chr3_4:71030589-71030608 Msa0519100:five_prime_UTR 30.0%
TTGTTGGAGATTTATCTAAG+AGG + chr3_4:71029094-71029113 None:intergenic 30.0%
GCCTAAGTAAAAACATTTGT+TGG + chr3_4:71029110-71029129 None:intergenic 30.0%
TTTCCATTATTGTTGGGTTA+GGG - chr3_4:71029184-71029203 Msa0519100:three_prime_UTR 30.0%
CTGTTATGAGTAATCCAAAT+GGG - chr3_4:71029219-71029238 Msa0519100:three_prime_UTR 30.0%
!!! GGAAATTTCATTTTGGGTTT+GGG + chr3_4:71029324-71029343 None:intergenic 30.0%
! TTAGGGGGAAATTTCATTTT+GGG + chr3_4:71029330-71029349 None:intergenic 30.0%
AGAATTTGATGAATGTTAGG+GGG + chr3_4:71029345-71029364 None:intergenic 30.0%
!! CAATATCATTGAGTTGATCT+TGG + chr3_4:71029609-71029628 None:intergenic 30.0%
! AACTTGTTCTTGACCTAAAT+AGG + chr3_4:71029758-71029777 None:intergenic 30.0%
AATGAATCCAAACAGTAACT+AGG + chr3_4:71029909-71029928 None:intergenic 30.0%
CATTCCTGTGAAATGAATTA+AGG - chr3_4:71030186-71030205 Msa0519100:CDS 30.0%
CAAACCTTAATTCATTTCAC+AGG + chr3_4:71030193-71030212 None:intergenic 30.0%
GATATACTGGTAATTAATGC+AGG - chr3_4:71030212-71030231 Msa0519100:CDS 30.0%
CAATCATTCGGAAATACATT+GGG + chr3_4:71030451-71030470 None:intergenic 30.0%
ACAATCATTCGGAAATACAT+TGG + chr3_4:71030452-71030471 None:intergenic 30.0%
GGCTAAACTAAACAATCATT+CGG + chr3_4:71030463-71030482 None:intergenic 30.0%
! ATTTTCCATCATCATCTTGT+AGG - chr3_4:71030497-71030516 Msa0519100:five_prime_UTR 30.0%
! TTTTCCATCATCATCTTGTA+GGG - chr3_4:71030498-71030517 Msa0519100:five_prime_UTR 30.0%
!! CTCAGCTATCTTTTACTTTT+GGG - chr3_4:71030570-71030589 Msa0519100:five_prime_UTR 30.0%
TGGGAAATAATGAACTGAAT+TGG - chr3_4:71030589-71030608 Msa0519100:five_prime_UTR 30.0%
GTTTCCATTATTGTTGGGTT+AGG - chr3_4:71029183-71029202 Msa0519100:three_prime_UTR 35.0%
GCTGTTATGAGTAATCCAAA+TGG - chr3_4:71029218-71029237 Msa0519100:three_prime_UTR 35.0%
!!! GGGAAATTTCATTTTGGGTT+TGG + chr3_4:71029325-71029344 None:intergenic 35.0%
! GTTAGGGGGAAATTTCATTT+TGG + chr3_4:71029331-71029350 None:intergenic 35.0%
TGCAATAGAACACACCTTTA+CGG - chr3_4:71029417-71029436 Msa0519100:CDS 35.0%
GCTTCTGTTCATGAATAGTA+CGG + chr3_4:71029524-71029543 None:intergenic 35.0%
GTACTATTCATGAACAGAAG+CGG - chr3_4:71029523-71029542 Msa0519100:intron 35.0%
CCATAAGTCCAATTTCTGTA+GGG + chr3_4:71029551-71029570 None:intergenic 35.0%
ACCATAAGTCCAATTTCTGT+AGG + chr3_4:71029552-71029571 None:intergenic 35.0%
AATTGGACTTATGGTATGAC+TGG - chr3_4:71029557-71029576 Msa0519100:intron 35.0%
TTGTAGATTACGACCTTGAA+TGG - chr3_4:71029626-71029645 Msa0519100:intron 35.0%
CTTTCTCCCAAACATTACAT+AGG + chr3_4:71029789-71029808 None:intergenic 35.0%
TATCACTCCTAGTTACTGTT+TGG - chr3_4:71029899-71029918 Msa0519100:CDS 35.0%
!! TCTTTTGGAAGTTTGATGAG+AGG - chr3_4:71030359-71030378 Msa0519100:five_prime_UTR 35.0%
! GCTCAGCTATCTTTTACTTT+TGG - chr3_4:71030569-71030588 Msa0519100:five_prime_UTR 35.0%
GTTTCCATTATTGTTGGGTT+AGG - chr3_4:71029183-71029202 Msa0519100:three_prime_UTR 35.0%
GCTGTTATGAGTAATCCAAA+TGG - chr3_4:71029218-71029237 Msa0519100:three_prime_UTR 35.0%
!!! GGGAAATTTCATTTTGGGTT+TGG + chr3_4:71029325-71029344 None:intergenic 35.0%
! GTTAGGGGGAAATTTCATTT+TGG + chr3_4:71029331-71029350 None:intergenic 35.0%
TGCAATAGAACACACCTTTA+CGG - chr3_4:71029417-71029436 Msa0519100:CDS 35.0%
GCTTCTGTTCATGAATAGTA+CGG + chr3_4:71029524-71029543 None:intergenic 35.0%
GTACTATTCATGAACAGAAG+CGG - chr3_4:71029523-71029542 Msa0519100:intron 35.0%
CCATAAGTCCAATTTCTGTA+GGG + chr3_4:71029551-71029570 None:intergenic 35.0%
ACCATAAGTCCAATTTCTGT+AGG + chr3_4:71029552-71029571 None:intergenic 35.0%
AATTGGACTTATGGTATGAC+TGG - chr3_4:71029557-71029576 Msa0519100:intron 35.0%
TTGTAGATTACGACCTTGAA+TGG - chr3_4:71029626-71029645 Msa0519100:intron 35.0%
CTTTCTCCCAAACATTACAT+AGG + chr3_4:71029789-71029808 None:intergenic 35.0%
TATCACTCCTAGTTACTGTT+TGG - chr3_4:71029899-71029918 Msa0519100:CDS 35.0%
!! TCTTTTGGAAGTTTGATGAG+AGG - chr3_4:71030359-71030378 Msa0519100:five_prime_UTR 35.0%
! GCTCAGCTATCTTTTACTTT+TGG - chr3_4:71030569-71030588 Msa0519100:five_prime_UTR 35.0%
TCTCCCTAACCCAACAATAA+TGG + chr3_4:71029190-71029209 None:intergenic 40.0%
AGTCAGAAACTGTACCCATT+TGG + chr3_4:71029236-71029255 None:intergenic 40.0%
! AAAGGTGTGTTCTATTGCAG+AGG + chr3_4:71029416-71029435 None:intergenic 40.0%
AGAACACACCTTTACGGTAA+CGG - chr3_4:71029423-71029442 Msa0519100:CDS 40.0%
CCCTACAGAAATTGGACTTA+TGG - chr3_4:71029548-71029567 Msa0519100:intron 40.0%
ATGTTGAAGTTTCGACCGTT+GGG + chr3_4:71029583-71029602 None:intergenic 40.0%
AAGGTTGTCCATGTTGAAGT+TGG - chr3_4:71029700-71029719 Msa0519100:intron 40.0%
GGAGAATACCAACTTCAACA+TGG + chr3_4:71029711-71029730 None:intergenic 40.0%
TTGGTATTCTCCGTCCTAAT+TGG - chr3_4:71029719-71029738 Msa0519100:intron 40.0%
!! CTTGATGGTGCTACCTATTT+AGG - chr3_4:71029742-71029761 Msa0519100:intron 40.0%
ATGAAGATGTTCTCACTCGA+AGG - chr3_4:71029827-71029846 Msa0519100:intron 40.0%
GTGTAGAAGATCCACTTAAC+AGG + chr3_4:71029853-71029872 None:intergenic 40.0%
GTTAAGTGGATCTTCTACAC+TGG - chr3_4:71029853-71029872 Msa0519100:CDS 40.0%
TGCTCATGTGATGACATTTG+AGG - chr3_4:71030241-71030260 Msa0519100:CDS 40.0%
! CATGTGATGACATTTGAGGT+TGG - chr3_4:71030245-71030264 Msa0519100:CDS 40.0%
GTCTGATTGAAGCAGTATAC+AGG + chr3_4:71030302-71030321 None:intergenic 40.0%
TTAGAATCTGCTACTGTTCG+TGG - chr3_4:71030332-71030351 Msa0519100:five_prime_UTR 40.0%
TTGTAGGGATGGATGCAATA+TGG - chr3_4:71030513-71030532 Msa0519100:five_prime_UTR 40.0%
TCTCCCTAACCCAACAATAA+TGG + chr3_4:71029190-71029209 None:intergenic 40.0%
AGTCAGAAACTGTACCCATT+TGG + chr3_4:71029236-71029255 None:intergenic 40.0%
! AAAGGTGTGTTCTATTGCAG+AGG + chr3_4:71029416-71029435 None:intergenic 40.0%
AGAACACACCTTTACGGTAA+CGG - chr3_4:71029423-71029442 Msa0519100:CDS 40.0%
CCCTACAGAAATTGGACTTA+TGG - chr3_4:71029548-71029567 Msa0519100:intron 40.0%
ATGTTGAAGTTTCGACCGTT+GGG + chr3_4:71029583-71029602 None:intergenic 40.0%
AAGGTTGTCCATGTTGAAGT+TGG - chr3_4:71029700-71029719 Msa0519100:intron 40.0%
GGAGAATACCAACTTCAACA+TGG + chr3_4:71029711-71029730 None:intergenic 40.0%
TTGGTATTCTCCGTCCTAAT+TGG - chr3_4:71029719-71029738 Msa0519100:intron 40.0%
!! CTTGATGGTGCTACCTATTT+AGG - chr3_4:71029742-71029761 Msa0519100:intron 40.0%
ATGAAGATGTTCTCACTCGA+AGG - chr3_4:71029827-71029846 Msa0519100:intron 40.0%
GTGTAGAAGATCCACTTAAC+AGG + chr3_4:71029853-71029872 None:intergenic 40.0%
GTTAAGTGGATCTTCTACAC+TGG - chr3_4:71029853-71029872 Msa0519100:CDS 40.0%
TGCTCATGTGATGACATTTG+AGG - chr3_4:71030241-71030260 Msa0519100:CDS 40.0%
! CATGTGATGACATTTGAGGT+TGG - chr3_4:71030245-71030264 Msa0519100:CDS 40.0%
GTCTGATTGAAGCAGTATAC+AGG + chr3_4:71030302-71030321 None:intergenic 40.0%
TTAGAATCTGCTACTGTTCG+TGG - chr3_4:71030332-71030351 Msa0519100:five_prime_UTR 40.0%
TTGTAGGGATGGATGCAATA+TGG - chr3_4:71030513-71030532 Msa0519100:five_prime_UTR 40.0%
CTACACAGAAATGTGACACG+TGG - chr3_4:71029267-71029286 Msa0519100:three_prime_UTR 45.0%
GTGGACAAATCTTGAGAGAG+TGG - chr3_4:71029297-71029316 Msa0519100:exon 45.0%
GTTGTTGAAAGCAGCAGCAA+TGG - chr3_4:71029390-71029409 Msa0519100:CDS 45.0%
GAGTAGTACCGTTACCGTAA+AGG + chr3_4:71029434-71029453 None:intergenic 45.0%
AGTACGGAATGAAACTGCTC+CGG + chr3_4:71029508-71029527 None:intergenic 45.0%
AAGCGGATCCCTACAGAAAT+TGG - chr3_4:71029540-71029559 Msa0519100:intron 45.0%
! TTATGGTATGACTGGCCCAA+CGG - chr3_4:71029565-71029584 Msa0519100:intron 45.0%
GATGTTGAAGTTTCGACCGT+TGG + chr3_4:71029584-71029603 None:intergenic 45.0%
TACGACCTTGAATGGACCAA+TGG - chr3_4:71029634-71029653 Msa0519100:intron 45.0%
AGGTTCCATTGGTCCATTCA+AGG + chr3_4:71029642-71029661 None:intergenic 45.0%
GTACATGAAGGAGGTTCCAT+TGG + chr3_4:71029653-71029672 None:intergenic 45.0%
! ATGGAGAGTGTACATGAAGG+AGG + chr3_4:71029662-71029681 None:intergenic 45.0%
CACCATCAAGCCAATTAGGA+CGG + chr3_4:71029732-71029751 None:intergenic 45.0%
GTAGCACCATCAAGCCAATT+AGG + chr3_4:71029736-71029755 None:intergenic 45.0%
! ACTGTTCGTGGCGATTCTTT+TGG - chr3_4:71030344-71030363 Msa0519100:five_prime_UTR 45.0%
CCATCCCTACAAGATGATGA+TGG + chr3_4:71030505-71030524 None:intergenic 45.0%
CCATCATCATCTTGTAGGGA+TGG - chr3_4:71030502-71030521 Msa0519100:five_prime_UTR 45.0%
CTACACAGAAATGTGACACG+TGG - chr3_4:71029267-71029286 Msa0519100:three_prime_UTR 45.0%
GTGGACAAATCTTGAGAGAG+TGG - chr3_4:71029297-71029316 Msa0519100:exon 45.0%
GTTGTTGAAAGCAGCAGCAA+TGG - chr3_4:71029390-71029409 Msa0519100:CDS 45.0%
GAGTAGTACCGTTACCGTAA+AGG + chr3_4:71029434-71029453 None:intergenic 45.0%
AGTACGGAATGAAACTGCTC+CGG + chr3_4:71029508-71029527 None:intergenic 45.0%
AAGCGGATCCCTACAGAAAT+TGG - chr3_4:71029540-71029559 Msa0519100:intron 45.0%
! TTATGGTATGACTGGCCCAA+CGG - chr3_4:71029565-71029584 Msa0519100:intron 45.0%
GATGTTGAAGTTTCGACCGT+TGG + chr3_4:71029584-71029603 None:intergenic 45.0%
TACGACCTTGAATGGACCAA+TGG - chr3_4:71029634-71029653 Msa0519100:intron 45.0%
AGGTTCCATTGGTCCATTCA+AGG + chr3_4:71029642-71029661 None:intergenic 45.0%
GTACATGAAGGAGGTTCCAT+TGG + chr3_4:71029653-71029672 None:intergenic 45.0%
! ATGGAGAGTGTACATGAAGG+AGG + chr3_4:71029662-71029681 None:intergenic 45.0%
CACCATCAAGCCAATTAGGA+CGG + chr3_4:71029732-71029751 None:intergenic 45.0%
GTAGCACCATCAAGCCAATT+AGG + chr3_4:71029736-71029755 None:intergenic 45.0%
! ACTGTTCGTGGCGATTCTTT+TGG - chr3_4:71030344-71030363 Msa0519100:five_prime_UTR 45.0%
CCATCCCTACAAGATGATGA+TGG + chr3_4:71030505-71030524 None:intergenic 45.0%
CCATCATCATCTTGTAGGGA+TGG - chr3_4:71030502-71030521 Msa0519100:five_prime_UTR 45.0%
TGTGACACGTGGTTTCACAG+TGG - chr3_4:71029278-71029297 Msa0519100:three_prime_UTR 50.0%
CGAGAGTGAGAAGAGAACGA+CGG + chr3_4:71029458-71029477 None:intergenic 50.0%
CGTTCTCTTCTCACTCTCGA+CGG - chr3_4:71029459-71029478 Msa0519100:CDS 50.0%
! GGGATGGAGAGTGTACATGA+AGG + chr3_4:71029665-71029684 None:intergenic 50.0%
CAACATGGACAACCTTGCAG+TGG + chr3_4:71029696-71029715 None:intergenic 50.0%
!! CTCCGTCCTAATTGGCTTGA+TGG - chr3_4:71029727-71029746 Msa0519100:intron 50.0%
TCACTCGAAGGCCTGTTAAG+TGG - chr3_4:71029839-71029858 Msa0519100:intron 50.0%
CAGTGCTTGAGGATGTGCAT+TGG - chr3_4:71030270-71030289 Msa0519100:CDS 50.0%
TGTGACACGTGGTTTCACAG+TGG - chr3_4:71029278-71029297 Msa0519100:three_prime_UTR 50.0%
CGAGAGTGAGAAGAGAACGA+CGG + chr3_4:71029458-71029477 None:intergenic 50.0%
CGTTCTCTTCTCACTCTCGA+CGG - chr3_4:71029459-71029478 Msa0519100:CDS 50.0%
! GGGATGGAGAGTGTACATGA+AGG + chr3_4:71029665-71029684 None:intergenic 50.0%
CAACATGGACAACCTTGCAG+TGG + chr3_4:71029696-71029715 None:intergenic 50.0%
!! CTCCGTCCTAATTGGCTTGA+TGG - chr3_4:71029727-71029746 Msa0519100:intron 50.0%
TCACTCGAAGGCCTGTTAAG+TGG - chr3_4:71029839-71029858 Msa0519100:intron 50.0%
CAGTGCTTGAGGATGTGCAT+TGG - chr3_4:71030270-71030289 Msa0519100:CDS 50.0%
TCTCTTCTCACTCTCGACGG+CGG - chr3_4:71029462-71029481 Msa0519100:CDS 55.0%
CATGGACAACCTTGCAGTGG+CGG + chr3_4:71029693-71029712 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG - chr3_4:71030259-71030278 Msa0519100:CDS 55.0%
! GCTTGAGGATGTGCATTGGC+AGG - chr3_4:71030274-71030293 Msa0519100:CDS 55.0%
TCTCTTCTCACTCTCGACGG+CGG - chr3_4:71029462-71029481 Msa0519100:CDS 55.0%
CATGGACAACCTTGCAGTGG+CGG + chr3_4:71029693-71029712 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG - chr3_4:71030259-71030278 Msa0519100:CDS 55.0%
! GCTTGAGGATGTGCATTGGC+AGG - chr3_4:71030274-71030293 Msa0519100:CDS 55.0%
GACAACCTTGCAGTGGCGGT+CGG + chr3_4:71029689-71029708 None:intergenic 60.0%
TGCTGCTGCTGCTGCTGCAT+AGG - chr3_4:71030391-71030410 Msa0519100:five_prime_UTR 60.0%
GACAACCTTGCAGTGGCGGT+CGG + chr3_4:71029689-71029708 None:intergenic 60.0%
TGCTGCTGCTGCTGCTGCAT+AGG - chr3_4:71030391-71030410 Msa0519100:five_prime_UTR 60.0%
AACTGCTCCGGCCAAGCTGC+CGG + chr3_4:71029496-71029515 None:intergenic 65.0%
ACCTTGCAGTGGCGGTCGGA+GGG + chr3_4:71029685-71029704 None:intergenic 65.0%
AACCTTGCAGTGGCGGTCGG+AGG + chr3_4:71029686-71029705 None:intergenic 65.0%
AACTGCTCCGGCCAAGCTGC+CGG + chr3_4:71029496-71029515 None:intergenic 65.0%
ACCTTGCAGTGGCGGTCGGA+GGG + chr3_4:71029685-71029704 None:intergenic 65.0%
AACCTTGCAGTGGCGGTCGG+AGG + chr3_4:71029686-71029705 None:intergenic 65.0%
CTCGACGGCGGAGCCAGTTC+CGG - chr3_4:71029474-71029493 Msa0519100:intron 70.0%
CGGAGCCAGTTCCGGCAGCT+TGG - chr3_4:71029482-71029501 Msa0519100:intron 70.0%
GCCAGTTCCGGCAGCTTGGC+CGG - chr3_4:71029486-71029505 Msa0519100:intron 70.0%
TCCGGCCAAGCTGCCGGAAC+TGG + chr3_4:71029490-71029509 None:intergenic 70.0%
TGCAGTGGCGGTCGGAGGGA+TGG + chr3_4:71029681-71029700 None:intergenic 70.0%
TCCCTCCGACCGCCACTGCA+AGG - chr3_4:71029681-71029700 Msa0519100:intron 70.0%
CTCGACGGCGGAGCCAGTTC+CGG - chr3_4:71029474-71029493 Msa0519100:intron 70.0%
CGGAGCCAGTTCCGGCAGCT+TGG - chr3_4:71029482-71029501 Msa0519100:intron 70.0%
GCCAGTTCCGGCAGCTTGGC+CGG - chr3_4:71029486-71029505 Msa0519100:intron 70.0%
TCCGGCCAAGCTGCCGGAAC+TGG + chr3_4:71029490-71029509 None:intergenic 70.0%
TGCAGTGGCGGTCGGAGGGA+TGG + chr3_4:71029681-71029700 None:intergenic 70.0%
TCCCTCCGACCGCCACTGCA+AGG - chr3_4:71029681-71029700 Msa0519100:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 71029091 71030635 71029091 ID=Msa0519100;Name=Msa0519100
chr3_4 mRNA 71029091 71030635 71029091 ID=Msa0519100-mRNA-1;Parent=Msa0519100;Name=Msa0519100-mRNA-1;_AED=0.34;_eAED=0.34;_QI=318|1|1|1|1|1|2|223|214
chr3_4 exon 71029091 71029492 71029091 ID=Msa0519100-mRNA-1:exon:19497;Parent=Msa0519100-mRNA-1
chr3_4 exon 71029852 71030635 71029852 ID=Msa0519100-mRNA-1:exon:19496;Parent=Msa0519100-mRNA-1
chr3_4 five_prime_UTR 71030318 71030635 71030318 ID=Msa0519100-mRNA-1:five_prime_utr;Parent=Msa0519100-mRNA-1
chr3_4 CDS 71029852 71030317 71029852 ID=Msa0519100-mRNA-1:cds;Parent=Msa0519100-mRNA-1
chr3_4 CDS 71029314 71029492 71029314 ID=Msa0519100-mRNA-1:cds;Parent=Msa0519100-mRNA-1
chr3_4 three_prime_UTR 71029091 71029313 71029091 ID=Msa0519100-mRNA-1:three_prime_utr;Parent=Msa0519100-mRNA-1
Gene Sequence

>Msa0519100

ATGGCCTCTGCAATAGAACACACCTTTACGGTAACGGTACTACTCTCCGTCGTTCTCTTCTCACTCTCGACGGCGGAGCCAGTTCCGGCAGCTTGGCCGGAGCAGTTTCATTCCGTACTATTCATGAACAGAAGCGGATCCCTACAGAAATTGGACTTATGGTATGACTGGCCCAACGGTCGAAACTTCAACATCATCCAAGATCAACTCAATGATATTGTAGATTACGACCTTGAATGGACCAATGGAACCTCCTTCATGTACACTCTCCATCCCTCCGACCGCCACTGCAAGGTTGTCCATGTTGAAGTTGGTATTCTCCGTCCTAATTGGCTTGATGGTGCTACCTATTTAGGTCAAGAACAAGTTGATAATTTCCTATGTAATGTTTGGGAGAAAGTTGATTTCATTGTGTATTATGAAGATGTTCTCACTCGAAGGCCTGTTAAGTGGATCTTCTACACTGGATACACTGCTCATGTGATGACATTTGAGGTTGGAGCAGTGCTTGAGGATGTGCATTGGCAGGCTCCTGTATACTGCTTCAATCAGACTGAGAATATGTTAGAATCTGCTACTGTTCGTGGCGATTCTTTTGGAAGTTTGATGAGAGGCAAAGTCGATGCTGCTGCTGCTGCTGCATAG

Protein sequence

>Msa0519100

MASAIEHTFTVTVLLSVVLFSLSTAEPVPAAWPEQFHSVLFMNRSGSLQKLDLWYDWPNGRNFNIIQDQLNDIVDYDLEWTNGTSFMYTLHPSDRHCKVVHVEVGILRPNWLDGATYLGQEQVDNFLCNVWEKVDFIVYYEDVLTRRPVKWIFYTGYTAHVMTFEVGAVLEDVHWQAPVYCFNQTENMLESATVRGDSFGSLMRGKVDAAAAAA*