AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585550 MtrunA17_Chr4g0001221 99.346 306 1 1 1 306 1 305 0.0 606
Msa0585550 MtrunA17_Chr2g0333771 82.958 311 44 4 1 306 4 310 2.09e-174 484
Msa0585550 MtrunA17_Chr4g0001111 98.190 221 3 1 1 221 1 220 1.57e-156 436
Msa0585550 MtrunA17_Chr1g0201331 58.824 289 103 3 7 289 9 287 1.19e-110 323
Msa0585550 MtrunA17_Chr4g0001161 92.857 140 10 0 89 228 1 140 2.08e-88 260
Msa0585550 MtrunA17_Chr8g0379901 53.448 232 102 3 71 299 35 263 1.38e-76 235
Msa0585550 MtrunA17_Chr8g0379911 53.509 228 100 3 75 299 38 262 1.33e-75 232
Msa0585550 MtrunA17_Chr2g0284631 55.093 216 95 2 71 285 87 301 1.48e-71 224
Msa0585550 MtrunA17_Chr7g0217331 46.122 245 129 2 61 305 23 264 2.19e-71 222
Msa0585550 MtrunA17_Chr2g0284591 48.400 250 121 3 54 299 15 260 1.01e-70 220
Msa0585550 MtrunA17_Chr2g0284581 51.046 239 107 4 71 306 34 265 5.09e-70 218
Msa0585550 MtrunA17_Chr4g0001151 87.023 131 2 1 89 219 1 116 5.32e-70 220
Msa0585550 MtrunA17_Chr2g0284611 48.400 250 121 3 54 299 17 262 5.40e-70 218
Msa0585550 MtrunA17_Chr2g0284601 50.000 216 103 2 87 299 1 214 1.33e-62 197
Msa0585550 MtrunA17_Chr5g0435051 45.833 240 120 4 64 295 29 266 4.71e-60 192
Msa0585550 MtrunA17_Chr4g0044201 43.494 269 122 7 50 306 5 255 5.58e-59 189
Msa0585550 MtrunA17_Chr3g0079421 49.138 232 112 5 56 285 8 235 9.82e-58 186
Msa0585550 MtrunA17_Chr5g0426131 44.907 216 112 3 75 286 37 249 9.40e-57 184
Msa0585550 MtrunA17_Chr4g0001121 98.876 89 1 0 218 306 10 98 4.36e-55 174
Msa0585550 MtrunA17_Chr1g0184541 40.724 221 130 1 73 293 60 279 5.53e-47 159
Msa0585550 MtrunA17_Chr2g0331261 36.726 226 122 7 79 290 24 242 2.34e-30 115
Msa0585550 MtrunA17_Chr1g0146161 36.893 206 109 8 80 273 24 220 7.23e-28 108
Msa0585550 MtrunA17_Chr8g0340161 36.058 208 114 6 79 273 23 224 1.52e-26 104
Msa0585550 MtrunA17_Chr1g0146171 35.437 206 112 8 80 273 24 220 3.21e-24 98.6
Msa0585550 MtrunA17_Chr1g0188771 34.247 219 135 4 79 289 25 242 2.19e-23 96.7
Msa0585550 MtrunA17_Chr5g0399341 34.951 206 118 5 79 273 23 223 5.77e-22 92.4
Msa0585550 MtrunA17_Chr6g0478191 31.963 219 140 4 79 289 25 242 1.03e-21 92.0
Msa0585550 MtrunA17_Chr2g0326621 30.657 274 143 8 68 305 22 284 5.11e-20 88.2
Msa0585550 MtrunA17_Chr3g0145671 29.434 265 151 10 68 305 19 274 2.58e-19 85.9
Msa0585550 MtrunA17_Chr1g0212671 29.680 219 145 4 79 289 25 242 4.18e-19 84.7
Msa0585550 MtrunA17_Chr4g0030861 31.034 203 131 4 80 274 26 227 3.75e-18 82.0
Msa0585550 MtrunA17_Chr7g0264961 33.816 207 119 6 79 273 25 225 1.92e-17 80.1
Msa0585550 MtrunA17_Chr7g0264111 27.407 270 156 8 68 305 21 282 4.23e-17 79.7
Msa0585550 MtrunA17_Chr3g0113211 27.869 244 149 7 68 284 37 280 9.24e-17 79.0
Msa0585550 MtrunA17_Chr8g0386961 27.778 234 142 7 68 274 34 267 1.00e-15 75.9
Msa0585550 MtrunA17_Chr5g0397391 28.302 212 136 5 79 274 56 267 3.07e-15 74.7
Msa0585550 MtrunA17_Chr4g0006001 28.302 212 135 6 79 274 60 270 1.00e-14 73.2
Msa0585550 MtrunA17_Chr5g0436701 27.778 234 142 7 68 274 37 270 1.13e-14 72.8
Msa0585550 MtrunA17_Chr4g0029071 26.740 273 154 8 68 305 21 282 1.54e-14 72.4
Msa0585550 MtrunA17_Chr7g0222791 27.397 219 150 4 79 289 25 242 2.07e-14 71.6
Msa0585550 MtrunA17_Chr4g0020781 29.524 210 132 5 104 305 12 213 2.64e-14 70.9
Msa0585550 MtrunA17_Chr1g0199731 25.556 270 161 8 68 305 21 282 4.24e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585550 AT1G80760.1 75.884 311 64 6 1 306 1 305 2.46e-159 446
Msa0585550 AT4G10380.1 68.924 251 67 4 43 289 48 291 2.64e-114 332
Msa0585550 AT4G19030.1 46.479 284 140 5 33 305 10 292 1.08e-74 231
Msa0585550 AT5G37820.1 48.178 247 123 4 55 299 24 267 6.03e-71 221
Msa0585550 AT5G37820.2 44.765 277 143 6 27 299 33 303 8.64e-71 222
Msa0585550 AT4G18910.1 44.027 293 143 6 29 305 2 289 3.12e-70 220
Msa0585550 AT5G37810.1 47.561 246 124 4 56 299 25 267 2.18e-68 214
Msa0585550 AT1G31885.1 44.980 249 128 3 65 305 33 280 8.07e-64 204
Msa0585550 AT1G31885.2 46.018 226 114 2 88 305 1 226 2.48e-60 194
Msa0585550 AT2G34390.1 41.155 277 143 7 43 306 13 282 6.76e-55 180
Msa0585550 AT2G34390.2 44.118 238 116 6 79 306 10 240 4.35e-52 172
Msa0585550 AT4G19030.3 46.759 216 103 5 33 237 10 224 1.37e-51 169
Msa0585550 AT4G18910.2 44.690 226 104 6 29 238 2 222 1.39e-47 159
Msa0585550 AT4G19030.2 44.670 197 97 5 33 218 10 205 1.35e-40 141
Msa0585550 AT3G06100.1 37.559 213 131 2 75 286 46 257 4.24e-40 141
Msa0585550 AT3G06100.2 37.674 215 126 4 79 289 2 212 1.57e-39 139
Msa0585550 AT2G34390.3 39.713 209 109 5 43 238 13 217 5.50e-35 126
Msa0585550 AT3G16240.1 37.019 208 112 6 79 273 23 224 7.43e-29 111
Msa0585550 AT2G34390.4 38.220 191 101 5 43 220 13 199 8.46e-28 108
Msa0585550 AT2G29870.1 47.826 115 57 1 192 306 22 133 6.07e-26 100
Msa0585550 AT2G25810.1 34.762 210 118 7 75 273 19 220 1.15e-25 102
Msa0585550 AT5G47450.1 34.211 228 123 8 79 285 23 244 1.52e-23 97.4
Msa0585550 AT4G17340.1 33.654 208 119 6 79 273 23 224 2.33e-22 94.0
Msa0585550 AT3G26520.1 32.174 230 136 6 79 295 26 248 5.86e-20 87.4
Msa0585550 AT3G06100.3 33.813 139 91 1 152 289 41 179 1.11e-19 85.5
Msa0585550 AT2G36830.1 33.654 208 119 6 79 273 25 226 3.57e-19 85.5
Msa0585550 AT4G35100.1 29.137 278 161 10 55 305 7 275 5.24e-18 82.8
Msa0585550 AT4G35100.2 29.137 278 161 10 55 305 7 275 5.24e-18 82.8
Msa0585550 AT1G17810.1 34.337 166 102 4 128 288 86 249 4.05e-17 80.1
Msa0585550 AT1G73190.1 32.927 164 107 2 129 289 87 250 7.21e-17 79.3
Msa0585550 AT2G16850.1 28.625 269 148 10 68 305 18 273 1.15e-16 79.0
Msa0585550 AT4G01470.1 28.632 234 140 7 79 291 25 252 3.63e-16 77.0
Msa0585550 AT5G60660.1 28.319 226 137 7 72 274 36 259 7.93e-16 76.6
Msa0585550 AT3G53420.1 27.106 273 153 9 68 305 21 282 2.55e-15 75.1
Msa0585550 AT3G53420.2 27.106 273 153 9 68 305 21 282 2.55e-15 75.1
Msa0585550 AT2G37170.1 27.106 273 153 9 68 305 19 280 3.41e-15 74.7
Msa0585550 AT4G00430.1 28.936 235 137 9 68 274 35 267 4.27e-15 74.7
Msa0585550 AT4G23400.1 29.577 213 131 7 79 274 57 267 5.19e-15 74.3
Msa0585550 AT2G37170.2 27.106 273 153 9 68 305 62 323 5.87e-15 74.7
Msa0585550 AT1G31885.3 43.182 88 49 1 65 152 33 119 7.11e-15 70.9
Msa0585550 AT3G54820.1 29.151 271 150 9 68 305 20 281 7.63e-15 73.9
Msa0585550 AT2G45960.1 29.487 234 137 8 68 274 34 266 8.82e-15 73.6
Msa0585550 AT1G01620.1 29.577 213 131 7 79 274 56 266 1.07e-14 73.6
Msa0585550 AT3G61430.2 30.516 213 129 7 79 274 56 266 5.06e-14 71.6
Msa0585550 AT3G61430.1 30.516 213 129 7 79 274 56 266 5.06e-14 71.6
Msa0585550 AT2G37180.1 26.103 272 157 9 68 305 19 280 1.00e-13 70.5
Msa0585550 AT1G01620.2 30.726 179 109 5 110 274 17 194 1.81e-13 68.6
Msa0585550 AT3G47440.1 27.354 223 146 6 79 290 27 244 8.75e-13 67.4
Msa0585550 AT2G45960.2 30.093 216 126 7 68 259 34 248 2.60e-12 66.2
Msa0585550 AT2G45960.3 30.093 216 126 7 68 259 34 248 2.93e-12 66.6
Msa0585550 AT2G39010.1 27.473 273 156 9 66 305 18 281 3.43e-12 66.2

Find 102 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGTGGCCTCTGGGTATT+TGG 0.110117 4_2:-6481457 Msa0585550:three_prime_UTR
AATGAAACCTTCGGAATTAT+TGG 0.131920 4_2:+6481252 None:intergenic
TTATCAACTGGTCACATTTC+TGG 0.140657 4_2:-6487150 Msa0585550:CDS
TCCTGTCCCTCTTGCCAAAA+AGG 0.248434 4_2:-6487739 Msa0585550:intron
TCTGGGTATTTGGGTTTAAT+AGG 0.249558 4_2:-6481447 Msa0585550:three_prime_UTR
GCTGGTCCTAGTGTTCTTAC+TGG 0.259920 4_2:+6481950 None:intergenic
TTGTCTTGATATATGTTAAT+TGG 0.261886 4_2:+6488072 None:intergenic
TTTCTGAGTTATGTATCTTT+TGG 0.287885 4_2:+6487223 None:intergenic
CATAACTCAGAAACACTAAT+TGG 0.296495 4_2:-6487213 Msa0585550:CDS
GCCCCTATTCTTGGTGCTCT+TGG 0.301422 4_2:-6481884 Msa0585550:CDS
TACTACATTCTAATGTTTGC+TGG 0.305325 4_2:-6487267 Msa0585550:CDS
TTCATTGAAGCTCCAGTTGC+AGG 0.320017 4_2:+6481974 None:intergenic
CATGTGGCCTCTGGGTATTT+GGG 0.321412 4_2:-6481456 Msa0585550:three_prime_UTR
GTTCTCTAGCATGTGGCCTC+TGG 0.323008 4_2:-6481465 Msa0585550:three_prime_UTR
GTATATTGCTGCACAAGTTT+TGG 0.323183 4_2:-6486959 Msa0585550:CDS
ATTATAGAGTGATTAGAGTA+TGG 0.330011 4_2:-6487964 Msa0585550:exon
CATCATCTTCTGAAACTTCC+AGG 0.332213 4_2:+6481788 None:intergenic
CAGGTTGGAGCTGAGTTTAT+AGG 0.341644 4_2:-6487294 Msa0585550:CDS
CCAGGAGTACCTGGGGTAGC+AGG 0.347255 4_2:+6487909 None:intergenic
CTTGGTGCTCTTGGTGGGGC+AGG 0.355406 4_2:-6481875 Msa0585550:CDS
TATCTCATAGCCCCTATTCT+TGG 0.361100 4_2:-6481893 Msa0585550:CDS
ACACGTCAAGCTTACAGATT+TGG 0.362644 4_2:-6481070 Msa0585550:three_prime_UTR
ACGGTTCCTTCAGTTGAATA+TGG 0.365783 4_2:-6486874 Msa0585550:CDS
CACCAAGAGCACCAAGAATA+GGG 0.367072 4_2:+6481882 None:intergenic
CCTGGGGTAGCAGGGGTAGA+AGG 0.377162 4_2:+6487918 None:intergenic
CAAAGTGTAGAATTGATTAG+AGG 0.382003 4_2:+6488010 None:intergenic
ATCAATTCTACACTTTGCTT+TGG 0.386576 4_2:-6488004 Msa0585550:five_prime_UTR
ATATACTGCAGGCCTGCAAC+TGG 0.394672 4_2:-6481986 Msa0585550:intron
TAGTTGTTTGCAGCAATTGC+TGG 0.400189 4_2:+6481932 None:intergenic
ATGCTCAACATACTCATTGC+TGG 0.401599 4_2:-6482579 Msa0585550:CDS
TTGGCAAGAGGGACAGGAGG+GGG 0.402167 4_2:+6487744 None:intergenic
CCTATTCTTGGTGCTCTTGG+TGG 0.402986 4_2:-6481881 Msa0585550:CDS
CCACCAAGAGCACCAAGAAT+AGG 0.407883 4_2:+6481881 None:intergenic
ATTGGATGTGCTGGAGCTAC+TGG 0.408901 4_2:-6487195 Msa0585550:CDS
CTATTCTTGGTGCTCTTGGT+GGG 0.417084 4_2:-6481880 Msa0585550:CDS
AGAGGAGCACCAGGAGTACC+TGG 0.426312 4_2:+6487900 None:intergenic
GGCAAAGAGCAAGTGACTTT+AGG 0.427110 4_2:+6487768 None:intergenic
ATACAAAGATTCTAATTAAG+AGG 0.432938 4_2:+6481725 None:intergenic
GGCTTCAAATCTGAGAGAAC+TGG 0.434296 4_2:-6487870 Msa0585550:CDS
ATGCAGGTGGGAGAACTTGC+GGG 0.438650 4_2:-6482624 Msa0585550:intron
TTCTCTAGCATGTGGCCTCT+GGG 0.447929 4_2:-6481464 Msa0585550:three_prime_UTR
CCTGCTACCCCAGGTACTCC+TGG 0.460634 4_2:-6487909 Msa0585550:CDS
AAATCTGAGAGAACTGGAAA+TGG 0.466281 4_2:-6487864 Msa0585550:CDS
CTGATTTATGTTTATCAAAG+TGG 0.466449 4_2:+6481594 None:intergenic
CTGCATTAAAACACTTCCCA+TGG 0.472333 4_2:-6487092 Msa0585550:CDS
TCAGAGTTAAACTCTTCATC+AGG 0.475612 4_2:+6481830 None:intergenic
GAAACACTAATTGGATGTGC+TGG 0.482781 4_2:-6487204 Msa0585550:CDS
GTGTGCATATGTAGCTAGCT+AGG 0.482837 4_2:+6481632 None:intergenic
CAAACAACTACAAAGGCATA+TGG 0.493499 4_2:-6481919 Msa0585550:CDS
GCAAATGAAATCGTGACGGC+TGG 0.507617 4_2:+6487114 None:intergenic
GTGACACCACCACTCATGAA+TGG 0.510613 4_2:+6486895 None:intergenic
TATTCTTGGTGCTCTTGGTG+GGG 0.515515 4_2:-6481879 Msa0585550:CDS
GAAGACTGGACTTTGGAAGA+TGG 0.520509 4_2:-6487798 Msa0585550:CDS
CAGGAGTACCTGGGGTAGCA+GGG 0.521311 4_2:+6487910 None:intergenic
ATCATCTTCTGAAACTTCCA+GGG 0.521569 4_2:+6481789 None:intergenic
GAAACTTCCAGGGGCAGAAG+AGG 0.526255 4_2:+6481799 None:intergenic
GTTAAAGCCTCTTCTGCCCC+TGG 0.527500 4_2:-6481806 Msa0585550:CDS
TTTCATCCATTCATGAGTGG+TGG 0.532048 4_2:-6486901 Msa0585550:CDS
TGCTCAACATACTCATTGCT+GGG 0.532589 4_2:-6482578 Msa0585550:intron
AAAGTGTAGAATTGATTAGA+GGG 0.534927 4_2:+6488011 None:intergenic
TAAACTCTAAAGCAAAAGCT+TGG 0.536190 4_2:+6486851 None:intergenic
TAGTGTTGAAGACTGGACTT+TGG 0.539097 4_2:-6487805 Msa0585550:CDS
AACACAAAATTATATTCTCA+TGG 0.549209 4_2:+6481406 None:intergenic
TTGATTAGAGGGTGAGAGAG+AGG 0.554033 4_2:+6488022 None:intergenic
GAACTTGCGGGAATCGCGGT+GGG 0.555721 4_2:-6482612 Msa0585550:CDS
CCTTCTACCCCTGCTACCCC+AGG 0.557794 4_2:-6487918 Msa0585550:CDS
ATGAAATCCAATAATTCCGA+AGG 0.561921 4_2:-6481259 Msa0585550:three_prime_UTR
GCAGGGGTAGAAGGTACTGA+TGG 0.572195 4_2:+6487927 None:intergenic
GCTTGGCCATATTCAACTGA+AGG 0.575237 4_2:+6486868 None:intergenic
GGGAGAACTTGCGGGAATCG+CGG 0.575910 4_2:-6482616 Msa0585550:CDS
TGATTAGAGTATGGACAATG+AGG 0.583019 4_2:-6487955 Msa0585550:exon
AGAGCAAGTGACTTTAGGTA+AGG 0.585846 4_2:+6487773 None:intergenic
AGAACTTGCGGGAATCGCGG+TGG 0.586192 4_2:-6482613 Msa0585550:CDS
ATGAATCCAGTAAGAACACT+AGG 0.586393 4_2:-6481956 Msa0585550:CDS
ATTCATGAGTGGTGGTGTCA+CGG 0.586869 4_2:-6486893 Msa0585550:CDS
AATGCAGGTGGGAGAACTTG+CGG 0.593498 4_2:-6482625 Msa0585550:intron
ACCAAGAGCACCAAGAATAG+GGG 0.596229 4_2:+6481883 None:intergenic
TGTGCATATGTAGCTAGCTA+GGG 0.601836 4_2:+6481633 None:intergenic
GACATTAGTTCTCTAGCATG+TGG 0.604049 4_2:-6481472 Msa0585550:three_prime_UTR
AGGAGTACCTGGGGTAGCAG+GGG 0.604848 4_2:+6487911 None:intergenic
TTTGGCAAGAGGGACAGGAG+GGG 0.604963 4_2:+6487743 None:intergenic
GAGGAGCACCAGGAGTACCT+GGG 0.605523 4_2:+6487901 None:intergenic
AGGAGCACCAGGAGTACCTG+GGG 0.605545 4_2:+6487902 None:intergenic
TGATGAAGAGTTTAACTCTG+AGG 0.607367 4_2:-6481828 Msa0585550:CDS
ACTCACAGCTCTTGTGTCGG+TGG 0.611393 4_2:+6486789 None:intergenic
CATGTTTGTTGTCACTGCAG+TGG 0.612813 4_2:-6486812 Msa0585550:CDS
TATTTGTAGCATCAATCTCA+AGG 0.615683 4_2:-6488045 Msa0585550:five_prime_UTR
CAGGGGTAGAAGGTACTGAT+GGG 0.623548 4_2:+6487928 None:intergenic
TGCAAAATGATTAAAAGACA+AGG 0.633552 4_2:+6481198 None:intergenic
TGCAGCAAATGAAATCGTGA+CGG 0.637791 4_2:+6487110 None:intergenic
GTATTTCCGAGACAAAATGA+AGG 0.640064 4_2:-6481310 Msa0585550:three_prime_UTR
CTATCTCTAGTAATAAACAA+TGG 0.645773 4_2:+6481376 None:intergenic
TAAGCTATGAAACACGGAGA+CGG 0.646894 4_2:-6481110 Msa0585550:three_prime_UTR
TCATCTTCTGAAACTTCCAG+GGG 0.658967 4_2:+6481790 None:intergenic
AGACGGACACAAACATGACA+CGG 0.662253 4_2:-6481093 Msa0585550:three_prime_UTR
ATTGCTGCAAACAACTACAA+AGG 0.670460 4_2:-6481926 Msa0585550:CDS
TATACTCACAGCTCTTGTGT+CGG 0.674496 4_2:+6486786 None:intergenic
ACTTGTGCAGCAATATACAA+AGG 0.678381 4_2:+6486964 None:intergenic
TGATCATAAGCTATGAAACA+CGG 0.704013 4_2:-6481116 Msa0585550:three_prime_UTR
AAGATGATGAATCATTCACA+AGG 0.712240 4_2:-6481774 Msa0585550:exon
GAGTATGTTGAGCATGACAG+TGG 0.737398 4_2:+6482587 None:intergenic
TATTAAACCCAAATACCCAG+AGG 0.772671 4_2:+6481449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAAATATATATTTAA+TGG + chr4_2:6486679-6486698 None:intergenic 0.0%
!!! TAATTTTGTGAATTAATTTT+AGG - chr4_2:6482130-6482149 Msa0585550:intron 10.0%
!! AAAAAAATGTATAAATAAAG+AGG + chr4_2:6482569-6482588 None:intergenic 10.0%
!!! AATAAAGTATTAAATGATTA+AGG - chr4_2:6483132-6483151 Msa0585550:intron 10.0%
!!! GTATTTTTTTGAAATTTATA+AGG + chr4_2:6483452-6483471 None:intergenic 10.0%
!! TTAAATAAGAAATGATTATA+CGG + chr4_2:6484175-6484194 None:intergenic 10.0%
!!! ATTTTTAAATTGAGAATAAT+TGG - chr4_2:6484700-6484719 Msa0585550:intron 10.0%
!!! TAAAACATTTTAAATTCTTG+AGG + chr4_2:6481296-6481315 None:intergenic 15.0%
!!! AATTAAAATATGTACCTTTT+TGG + chr4_2:6481397-6481416 None:intergenic 15.0%
!! TTAAATGTTATAGAGAATTA+CGG - chr4_2:6481492-6481511 Msa0585550:three_prime_UTR 15.0%
!! TTTAGTACATGTTAAAATTA+GGG + chr4_2:6481650-6481669 None:intergenic 15.0%
!!! TTTTAGTACATGTTAAAATT+AGG + chr4_2:6481651-6481670 None:intergenic 15.0%
!! AAAGTTCTTATAATAGAATA+TGG + chr4_2:6482375-6482394 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_2:6482505-6482524 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_2:6482506-6482525 None:intergenic 15.0%
!!! ATACTTTGTTTAAGAAAATA+AGG - chr4_2:6482742-6482761 Msa0585550:intron 15.0%
!! ATAATTAGAAACAAATAAAG+AGG - chr4_2:6482842-6482861 Msa0585550:intron 15.0%
!! TAATTAGAAACAAATAAAGA+GGG - chr4_2:6482843-6482862 Msa0585550:intron 15.0%
!! TTAAAATGTGACAATTAAAA+AGG - chr4_2:6483228-6483247 Msa0585550:intron 15.0%
!!! TTTTTTTGGATTCAATTTTA+AGG + chr4_2:6483637-6483656 None:intergenic 15.0%
!! TAATTAAATAATTACATACG+TGG + chr4_2:6484057-6484076 None:intergenic 15.0%
!!! TTTGGTTTTTTTTATTTTTC+TGG + chr4_2:6484436-6484455 None:intergenic 15.0%
!! ATTTGAAAGAAATTATCAAA+AGG - chr4_2:6484541-6484560 Msa0585550:intron 15.0%
!! TTATGATTGTATACATAAAT+CGG - chr4_2:6484638-6484657 Msa0585550:intron 15.0%
!! ATTTAGAAAAAGATTATATG+AGG - chr4_2:6484931-6484950 Msa0585550:intron 15.0%
!! TTTAGAAAAAGATTATATGA+GGG - chr4_2:6484932-6484951 Msa0585550:intron 15.0%
!! AATATTTATGCATAGTTATT+AGG + chr4_2:6485225-6485244 None:intergenic 15.0%
!!! AGTTTTGATAAATTACAATT+TGG - chr4_2:6486358-6486377 Msa0585550:intron 15.0%
!! TTGTCAAAAAAACAATAATA+TGG + chr4_2:6486420-6486439 None:intergenic 15.0%
!!! TATTATTGTTTTTTTGACAA+AGG - chr4_2:6486420-6486439 Msa0585550:intron 15.0%
!! TTGTCTTGATATATGTTAAT+TGG + chr4_2:6481050-6481069 None:intergenic 20.0%
!!! TACTAACATGATTTTTGTAA+AGG - chr4_2:6481567-6481586 Msa0585550:three_prime_UTR 20.0%
!!! GTGTAACATTTTTTAAAATC+CGG - chr4_2:6481597-6481616 Msa0585550:three_prime_UTR 20.0%
!! TACATGGTAAAAAAGTTAAT+AGG - chr4_2:6481737-6481756 Msa0585550:three_prime_UTR 20.0%
!! ACATGGTAAAAAAGTTAATA+GGG - chr4_2:6481738-6481757 Msa0585550:three_prime_UTR 20.0%
!! CACATCAATATATCAAAAAT+AGG + chr4_2:6481766-6481785 None:intergenic 20.0%
!! ATGTGTTAAATAATGTAGTT+GGG - chr4_2:6481781-6481800 Msa0585550:exon 20.0%
!!! ATGATCATAATTTTATCAAC+TGG - chr4_2:6481957-6481976 Msa0585550:CDS 20.0%
!! TGAATTAGAAGATGAATTTA+AGG + chr4_2:6482076-6482095 None:intergenic 20.0%
!! AAGATATCAAAAGTAATGAT+TGG + chr4_2:6482925-6482944 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG + chr4_2:6483090-6483109 None:intergenic 20.0%
!! ATAAATTGTTGTATCAAAAG+TGG - chr4_2:6483171-6483190 Msa0585550:intron 20.0%
!!! TAAAGGTACAATTGTATATA+TGG - chr4_2:6483369-6483388 Msa0585550:intron 20.0%
!!! TTTTATATATCCATTTAGTG+AGG + chr4_2:6483736-6483755 None:intergenic 20.0%
!!! AAGTTTTTAAAAGTTAAGAG+GGG + chr4_2:6483921-6483940 None:intergenic 20.0%
!!! CAAGTTTTTAAAAGTTAAGA+GGG + chr4_2:6483922-6483941 None:intergenic 20.0%
!!! CTTTTAAAAACTTGCAATTT+TGG - chr4_2:6483928-6483947 Msa0585550:intron 20.0%
!!! AATTGTAGTTTTCATACTTA+GGG + chr4_2:6485149-6485168 None:intergenic 20.0%
!!! AAATTGTAGTTTTCATACTT+AGG + chr4_2:6485148-6485167 None:intergenic 20.0%
!!! AAAAAGATTAATTGGGATTT+TGG - chr4_2:6484664-6484683 Msa0585550:intron 20.0%
!!! AAAAGATTAATTGGGATTTT+GGG - chr4_2:6484665-6484684 Msa0585550:intron 20.0%
!! TAATTAAATAATTACACACG+TGG - chr4_2:6485048-6485067 Msa0585550:intron 20.0%
!!! AAGTATGAAAACTACAATTT+TGG + chr4_2:6483957-6483976 None:intergenic 20.0%
!!! AAATTGTAGTTTTCATACTT+AGG - chr4_2:6485148-6485167 Msa0585550:intron 20.0%
!!! AATTGTAGTTTTCATACTTA+GGG - chr4_2:6485149-6485168 Msa0585550:intron 20.0%
!! TATGCATAAATATTGAAAAC+AGG - chr4_2:6485231-6485250 Msa0585550:intron 20.0%
!!! TTGATTCCCTTTTTTTTAAT+CGG - chr4_2:6485825-6485844 Msa0585550:intron 20.0%
!! AATACAGTATAATTATACTG+TGG - chr4_2:6486045-6486064 Msa0585550:intron 20.0%
!!! TTTATATCATTTGTTTTGTC+GGG + chr4_2:6486862-6486881 None:intergenic 20.0%
!!! GTTTATATCATTTGTTTTGT+CGG + chr4_2:6486863-6486882 None:intergenic 20.0%
!! ATACAAAGATTCTAATTAAG+AGG + chr4_2:6487397-6487416 None:intergenic 20.0%
!! AACACAAAATTATATTCTCA+TGG + chr4_2:6487716-6487735 None:intergenic 20.0%
!!! AATATAATTTTGTGTTAGTG+AGG - chr4_2:6487720-6487739 Msa0585550:intron 20.0%
!! CAAAAATAAAATGAAACCTT+CGG + chr4_2:6487879-6487898 None:intergenic 20.0%
! AAAGTGTAGAATTGATTAGA+GGG + chr4_2:6481111-6481130 None:intergenic 25.0%
! ATTATAGAGTGATTAGAGTA+TGG - chr4_2:6481155-6481174 Msa0585550:three_prime_UTR 25.0%
! TGTTAAAATTAGGGTGAATT+TGG + chr4_2:6481641-6481660 None:intergenic 25.0%
! CATGGTAAAAAAGTTAATAG+GGG - chr4_2:6481739-6481758 Msa0585550:three_prime_UTR 25.0%
! GATGTGTTAAATAATGTAGT+TGG - chr4_2:6481780-6481799 Msa0585550:exon 25.0%
! GATTAATGTAATCATTTACC+AGG - chr4_2:6481806-6481825 Msa0585550:CDS 25.0%
!! TTTCTGAGTTATGTATCTTT+TGG + chr4_2:6481899-6481918 None:intergenic 25.0%
!!! TTGTTGTTACATTTTTCCAT+GGG + chr4_2:6482046-6482065 None:intergenic 25.0%
!!! TTTGTTGTTACATTTTTCCA+TGG + chr4_2:6482047-6482066 None:intergenic 25.0%
!!! GGACACTTTTTTTAGTAAAT+GGG + chr4_2:6482437-6482456 None:intergenic 25.0%
!!! TGAAATAGCTCAGTTATTTT+GGG + chr4_2:6482458-6482477 None:intergenic 25.0%
!! TTGAAATAGCTCAGTTATTT+TGG + chr4_2:6482459-6482478 None:intergenic 25.0%
! TGTATAAATAAAGAGGAAAG+TGG + chr4_2:6482562-6482581 None:intergenic 25.0%
! TCTCTGCAATAAATATATAG+GGG + chr4_2:6483099-6483118 None:intergenic 25.0%
! CTCTCTGCAATAAATATATA+GGG + chr4_2:6483100-6483119 None:intergenic 25.0%
! TCTCTCTGCAATAAATATAT+AGG + chr4_2:6483101-6483120 None:intergenic 25.0%
! TTTGTGAAATCAATTTCTGA+TGG + chr4_2:6483330-6483349 None:intergenic 25.0%
! AATACTAACATATGTCCTTA+TGG - chr4_2:6483434-6483453 Msa0585550:intron 25.0%
! ATGTTCATTGATACAATTAG+TGG + chr4_2:6483773-6483792 None:intergenic 25.0%
! TCTATACTGATAATAGTTGA+AGG - chr4_2:6483830-6483849 Msa0585550:intron 25.0%
! TGTTGCATCAAATAATAACT+AGG - chr4_2:6483880-6483899 Msa0585550:intron 25.0%
!!! GCAAGTTTTTAAAAGTTAAG+AGG + chr4_2:6483923-6483942 None:intergenic 25.0%
! AAAAGGACCAAATTTACAAT+GGG + chr4_2:6483999-6484018 None:intergenic 25.0%
! AAAAAGGACCAAATTTACAA+TGG + chr4_2:6484000-6484019 None:intergenic 25.0%
! GAAATGATTATACGGTTATA+TGG + chr4_2:6484167-6484186 None:intergenic 25.0%
! AGAGATATTGGCAATAATTT+GGG + chr4_2:6484278-6484297 None:intergenic 25.0%
! AAGAGATATTGGCAATAATT+TGG + chr4_2:6484279-6484298 None:intergenic 25.0%
! GGAAGAAATTGTTAATGATT+GGG + chr4_2:6484321-6484340 None:intergenic 25.0%
! TGGAAGAAATTGTTAATGAT+TGG + chr4_2:6484322-6484341 None:intergenic 25.0%
! TGATAAAGCAAACAAAAATG+AGG + chr4_2:6484345-6484364 None:intergenic 25.0%
! AAGATGAATATAGTTTAGCT+TGG + chr4_2:6484393-6484412 None:intergenic 25.0%
!! CACTATTTTCTTCTAACATT+TGG + chr4_2:6484454-6484473 None:intergenic 25.0%
! TAGAAGAAAATAGTGAAAAG+AGG - chr4_2:6484459-6484478 Msa0585550:intron 25.0%
! ATTCGAATCAAATATGTTTC+AGG + chr4_2:6484493-6484512 None:intergenic 25.0%
! CAATCATAAATCATGTCATT+TGG + chr4_2:6484627-6484646 None:intergenic 25.0%
!! AAAGATTAATTGGGATTTTG+GGG - chr4_2:6484666-6484685 Msa0585550:intron 25.0%
!!! AATAATTGGTTTTCTAGACA+TGG - chr4_2:6484714-6484733 Msa0585550:intron 25.0%
!! TTTTCTTTCTTTTTTTCCTC+TGG - chr4_2:6484779-6484798 Msa0585550:intron 25.0%
!! ATTGTAGTTTTCATACTTAG+GGG - chr4_2:6485150-6485169 Msa0585550:intron 25.0%
!! CTTTCAAAAACTTGCAATTT+TGG + chr4_2:6485177-6485196 None:intergenic 25.0%
!!! TTGCAAGTTTTTGAAAGTTA+AGG - chr4_2:6485180-6485199 Msa0585550:intron 25.0%
!!! TGCAAGTTTTTGAAAGTTAA+GGG - chr4_2:6485181-6485200 Msa0585550:intron 25.0%
! ACAACTCCGATTAAAAAAAA+GGG + chr4_2:6485834-6485853 None:intergenic 25.0%
! TAAAGTAACAGTGTCAAAAA+AGG - chr4_2:6486020-6486039 Msa0585550:intron 25.0%
! TTAATGTAGATAATGACTTG+TGG - chr4_2:6486460-6486479 Msa0585550:intron 25.0%
! CGAATGTGATTAAAATAATG+AGG + chr4_2:6486585-6486604 None:intergenic 25.0%
! TTTAACTCTTAAAGCAAATG+AGG + chr4_2:6486795-6486814 None:intergenic 25.0%
! CTAGACACTAAAATATTTAG+TGG - chr4_2:6486818-6486837 Msa0585550:CDS 25.0%
! AAAGATCCAATATTCCATTT+AGG - chr4_2:6486898-6486917 Msa0585550:CDS 25.0%
! GAAATTCAGACATGTAAAAA+AGG - chr4_2:6487005-6487024 Msa0585550:intron 25.0%
! AAATACATACACGTAAAAAC+AGG + chr4_2:6487039-6487058 None:intergenic 25.0%
! CTGATTTATGTTTATCAAAG+TGG + chr4_2:6487528-6487547 None:intergenic 25.0%
!!! AAAACAGCACTGATTTTTTT+TGG + chr4_2:6487603-6487622 None:intergenic 25.0%
! CTATCTCTAGTAATAAACAA+TGG + chr4_2:6487746-6487765 None:intergenic 25.0%
! TGCAAAATGATTAAAAGACA+AGG + chr4_2:6487924-6487943 None:intergenic 25.0%
!!! TTATTTTGCATACTATAGAG+AGG - chr4_2:6487967-6487986 Msa0585550:exon 25.0%
TATTTGTAGCATCAATCTCA+AGG - chr4_2:6481074-6481093 Msa0585550:three_prime_UTR 30.0%
CAAAGTGTAGAATTGATTAG+AGG + chr4_2:6481112-6481131 None:intergenic 30.0%
ATCAATTCTACACTTTGCTT+TGG - chr4_2:6481115-6481134 Msa0585550:three_prime_UTR 30.0%
!!! AATGTTTTAGTGTTGAAGAC+TGG - chr4_2:6481307-6481326 Msa0585550:three_prime_UTR 30.0%
ACCTTGTATAGTTTCATACA+TGG - chr4_2:6481721-6481740 Msa0585550:three_prime_UTR 30.0%
ACCATGTATGAAACTATACA+AGG + chr4_2:6481725-6481744 None:intergenic 30.0%
AATGTAATCATTTACCAGGT+TGG - chr4_2:6481810-6481829 Msa0585550:CDS 30.0%
TACTACATTCTAATGTTTGC+TGG - chr4_2:6481852-6481871 Msa0585550:CDS 30.0%
CATAACTCAGAAACACTAAT+TGG - chr4_2:6481906-6481925 Msa0585550:CDS 30.0%
!! TAAACTCTAAAGCAAAAGCT+TGG + chr4_2:6482271-6482290 None:intergenic 30.0%
!!! GGGACACTTTTTTTAGTAAA+TGG + chr4_2:6482438-6482457 None:intergenic 30.0%
AGGAAATGCAAATAAACAAG+AGG - chr4_2:6482762-6482781 Msa0585550:intron 30.0%
AAGTGACAGTTATAAAGGAA+CGG + chr4_2:6482998-6483017 None:intergenic 30.0%
TGCAAAAGTGACAGTTATAA+AGG + chr4_2:6483003-6483022 None:intergenic 30.0%
! GTTCAAAGCATCATTAAATG+TGG - chr4_2:6483059-6483078 Msa0585550:intron 30.0%
TGACAATTAAAAAGGAACAG+AGG - chr4_2:6483236-6483255 Msa0585550:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG - chr4_2:6483237-6483256 Msa0585550:intron 30.0%
GTACACTAACAAATACCATA+AGG + chr4_2:6483485-6483504 None:intergenic 30.0%
AAATATCTCACTGCAAAACA+TGG + chr4_2:6483807-6483826 None:intergenic 30.0%
! TTTTAGCCCCATTGTAAATT+TGG - chr4_2:6483989-6484008 Msa0585550:intron 30.0%
AAAGGACCAAATTTACAATG+GGG + chr4_2:6483998-6484017 None:intergenic 30.0%
GCAATAATTTGGGGATTTAT+GGG + chr4_2:6484268-6484287 None:intergenic 30.0%
GAGATATTGGCAATAATTTG+GGG + chr4_2:6484277-6484296 None:intergenic 30.0%
GTTATGTTGAGAAGAGATAT+TGG + chr4_2:6484290-6484309 None:intergenic 30.0%
TAAAGCAAACAAAAATGAGG+TGG + chr4_2:6484342-6484361 None:intergenic 30.0%
TGATTCGAATTTGACAGTAA+TGG - chr4_2:6484503-6484522 Msa0585550:intron 30.0%
TGATTGTATACATAAATCGG+TGG - chr4_2:6484641-6484660 Msa0585550:intron 30.0%
ATCGGTGGAAAAAGATTAAT+TGG - chr4_2:6484656-6484675 Msa0585550:intron 30.0%
TCGGTGGAAAAAGATTAATT+GGG - chr4_2:6484657-6484676 Msa0585550:intron 30.0%
! GTTGAAAATGATGATGATGA+TGG - chr4_2:6484743-6484762 Msa0585550:intron 30.0%
CATTCATCAAATAAATCCAG+AGG + chr4_2:6484798-6484817 None:intergenic 30.0%
TTATGAAGATGAAGAAGATG+AGG - chr4_2:6484819-6484838 Msa0585550:intron 30.0%
TATGAAGATGAAGAAGATGA+GGG - chr4_2:6484820-6484839 Msa0585550:intron 30.0%
AAAAAGGACCAAATTTGCAA+TGG - chr4_2:6485105-6485124 Msa0585550:intron 30.0%
AAAAGGACCAAATTTGCAAT+GGG - chr4_2:6485106-6485125 Msa0585550:intron 30.0%
! TTGTAGTTTTCATACTTAGG+GGG - chr4_2:6485151-6485170 Msa0585550:intron 30.0%
!! GCAAGTTTTTGAAAGTTAAG+GGG - chr4_2:6485182-6485201 Msa0585550:intron 30.0%
!! CAAGTTTTTGAAAGTTAAGG+GGG - chr4_2:6485183-6485202 Msa0585550:intron 30.0%
!! AAGTTTTTGAAAGTTAAGGG+GGG - chr4_2:6485184-6485203 Msa0585550:intron 30.0%
!! CAAAATTATTGTTTTGCCCA+TGG + chr4_2:6485297-6485316 None:intergenic 30.0%
! CATGGGCAAAACAATAATTT+TGG - chr4_2:6485295-6485314 Msa0585550:intron 30.0%
!! ATAATTTTGGTGTGAACTAG+AGG - chr4_2:6485308-6485327 Msa0585550:intron 30.0%
!! TAATTTTGGTGTGAACTAGA+GGG - chr4_2:6485309-6485328 Msa0585550:intron 30.0%
AGAAAAGAGGTGAAAAAGAA+GGG + chr4_2:6485569-6485588 None:intergenic 30.0%
AAGAAAAGAGGTGAAAAAGA+AGG + chr4_2:6485570-6485589 None:intergenic 30.0%
TAGAATGAATGAAAGAAAGC+AGG + chr4_2:6485781-6485800 None:intergenic 30.0%
CACAACTCCGATTAAAAAAA+AGG + chr4_2:6485835-6485854 None:intergenic 30.0%
GTTGATATATATGAGACAGA+GGG + chr4_2:6486183-6486202 None:intergenic 30.0%
TGTTGATATATATGAGACAG+AGG + chr4_2:6486184-6486203 None:intergenic 30.0%
AAATAATGAGGAGTGAAAGT+TGG + chr4_2:6486573-6486592 None:intergenic 30.0%
AGATACGTTGCAAATTCTTA+AGG - chr4_2:6486747-6486766 Msa0585550:intron 30.0%
! TTTTCTTATCTCACACTTCT+CGG - chr4_2:6486959-6486978 Msa0585550:CDS 30.0%
TTTGACACTAAATATACTGC+AGG - chr4_2:6487122-6487141 Msa0585550:CDS 30.0%
AAGATGATGAATCATTCACA+AGG - chr4_2:6487345-6487364 Msa0585550:intron 30.0%
! CATATTCCTTCATTTTGTCT+CGG + chr4_2:6487818-6487837 None:intergenic 30.0%
ATGAAATCCAATAATTCCGA+AGG - chr4_2:6487860-6487879 Msa0585550:CDS 30.0%
AATGAAACCTTCGGAATTAT+TGG + chr4_2:6487870-6487889 None:intergenic 30.0%
TGATCATAAGCTATGAAACA+CGG - chr4_2:6488003-6488022 Msa0585550:five_prime_UTR 30.0%
TGATTAGAGTATGGACAATG+AGG - chr4_2:6481164-6481183 Msa0585550:three_prime_UTR 35.0%
AAATCTGAGAGAACTGGAAA+TGG - chr4_2:6481255-6481274 Msa0585550:three_prime_UTR 35.0%
!! TATGTACCTTTTTGGCAAGA+GGG + chr4_2:6481389-6481408 None:intergenic 35.0%
!! ATATGTACCTTTTTGGCAAG+AGG + chr4_2:6481390-6481409 None:intergenic 35.0%
TGTACTAAAACTTGATGTCG+CGG - chr4_2:6481661-6481680 Msa0585550:three_prime_UTR 35.0%
TTATCAACTGGTCACATTTC+TGG - chr4_2:6481969-6481988 Msa0585550:CDS 35.0%
ACTTGTGCAGCAATATACAA+AGG + chr4_2:6482158-6482177 None:intergenic 35.0%
! GTATATTGCTGCACAAGTTT+TGG - chr4_2:6482160-6482179 Msa0585550:intron 35.0%
! TGTGCTTCTTTTACTCTCAA+AGG - chr4_2:6482191-6482210 Msa0585550:intron 35.0%
! GTTTTTCATCCATTCATGAG+TGG - chr4_2:6482215-6482234 Msa0585550:intron 35.0%
AGTAAATGGGTCAGATATTC+CGG + chr4_2:6482424-6482443 None:intergenic 35.0%
!! AGTAATGATTGGTGCTGAAA+GGG + chr4_2:6482914-6482933 None:intergenic 35.0%
!! AAGTAATGATTGGTGCTGAA+AGG + chr4_2:6482915-6482934 None:intergenic 35.0%
ATCTTATGATTCAAGCCACT+AGG - chr4_2:6482940-6482959 Msa0585550:intron 35.0%
!!! TCTTCTTGGTCGACTTTTTT+TGG + chr4_2:6483651-6483670 None:intergenic 35.0%
! AAGACATGCTTTTGTCCAAA+AGG - chr4_2:6483667-6483686 Msa0585550:intron 35.0%
! TGATAATAGTTGAAGGCATG+TGG - chr4_2:6483837-6483856 Msa0585550:intron 35.0%
TACAATGGGGCTAAAACTTA+GGG + chr4_2:6483985-6484004 None:intergenic 35.0%
TTACAATGGGGCTAAAACTT+AGG + chr4_2:6483986-6484005 None:intergenic 35.0%
!! TCCTTTTTGCCAATTTTGAC+CGG - chr4_2:6484012-6484031 Msa0585550:intron 35.0%
ATAATTTGGGGATTTATGGG+TGG + chr4_2:6484265-6484284 None:intergenic 35.0%
GGCAATAATTTGGGGATTTA+TGG + chr4_2:6484269-6484288 None:intergenic 35.0%
TTCGAATTTGACAGTAATGG+TGG - chr4_2:6484506-6484525 Msa0585550:intron 35.0%
!! GAAAATGATGATGATGATGG+AGG - chr4_2:6484746-6484765 Msa0585550:intron 35.0%
ACAGGTCAAAATTGGCAAAA+AGG - chr4_2:6485089-6485108 Msa0585550:intron 35.0%
AAAGGACCAAATTTGCAATG+GGG - chr4_2:6485107-6485126 Msa0585550:intron 35.0%
! TTTTAGCCCCATTGCAAATT+TGG + chr4_2:6485116-6485135 None:intergenic 35.0%
AAACACAATACAGACACCAT+GGG - chr4_2:6485278-6485297 Msa0585550:intron 35.0%
!! AATTTTGGTGTGAACTAGAG+GGG - chr4_2:6485310-6485329 Msa0585550:intron 35.0%
GGAAAATGAGAATAAGGGAA+TGG + chr4_2:6485349-6485368 None:intergenic 35.0%
GGCATGGAAAATGAGAATAA+GGG + chr4_2:6485354-6485373 None:intergenic 35.0%
AGGCATGGAAAATGAGAATA+AGG + chr4_2:6485355-6485374 None:intergenic 35.0%
GAAAAGAGGTGAAAAAGAAG+GGG + chr4_2:6485568-6485587 None:intergenic 35.0%
AATGAATGAAAGAAAGCAGG+AGG + chr4_2:6485778-6485797 None:intergenic 35.0%
CTACATGTTCATGTTCAGTA+AGG + chr4_2:6486149-6486168 None:intergenic 35.0%
CGTTGCAAATTCTTAAGGTA+TGG - chr4_2:6486752-6486771 Msa0585550:intron 35.0%
ACAAGGCCTAAATGGAATAT+TGG + chr4_2:6486907-6486926 None:intergenic 35.0%
TAAGATCCTGTTAGGAAACA+AGG + chr4_2:6486924-6486943 None:intergenic 35.0%
GCAAACAATAAGATCCTGTT+AGG + chr4_2:6486932-6486951 None:intergenic 35.0%
ATGAATCCAGTAAGAACACT+AGG - chr4_2:6487163-6487182 Msa0585550:CDS 35.0%
ATTGCTGCAAACAACTACAA+AGG - chr4_2:6487193-6487212 Msa0585550:CDS 35.0%
! CAAACAACTACAAAGGCATA+TGG - chr4_2:6487200-6487219 Msa0585550:CDS 35.0%
TCAGAGTTAAACTCTTCATC+AGG + chr4_2:6487292-6487311 None:intergenic 35.0%
TGATGAAGAGTTTAACTCTG+AGG - chr4_2:6487291-6487310 Msa0585550:CDS 35.0%
!! ATCATCTTCTGAAACTTCCA+GGG + chr4_2:6487333-6487352 None:intergenic 35.0%
TATTAAACCCAAATACCCAG+AGG + chr4_2:6487673-6487692 None:intergenic 35.0%
! TCTGGGTATTTGGGTTTAAT+AGG - chr4_2:6487672-6487691 Msa0585550:intron 35.0%
GTATTTCCGAGACAAAATGA+AGG - chr4_2:6487809-6487828 Msa0585550:CDS 35.0%
! GATTTGAAGCCACCAAAAAG+AGG + chr4_2:6481240-6481259 None:intergenic 40.0%
! TAGTGTTGAAGACTGGACTT+TGG - chr4_2:6481314-6481333 Msa0585550:three_prime_UTR 40.0%
AGAGCAAGTGACTTTAGGTA+AGG + chr4_2:6481349-6481368 None:intergenic 40.0%
!!! CTTTTGGTTCACAATTGCAG+TGG + chr4_2:6481883-6481902 None:intergenic 40.0%
GAAACACTAATTGGATGTGC+TGG - chr4_2:6481915-6481934 Msa0585550:CDS 40.0%
TGCAGCAAATGAAATCGTGA+CGG + chr4_2:6482012-6482031 None:intergenic 40.0%
CTGCATTAAAACACTTCCCA+TGG - chr4_2:6482027-6482046 Msa0585550:intron 40.0%
TTTCATCCATTCATGAGTGG+TGG - chr4_2:6482218-6482237 Msa0585550:intron 40.0%
ACGGTTCCTTCAGTTGAATA+TGG - chr4_2:6482245-6482264 Msa0585550:intron 40.0%
TATACTCACAGCTCTTGTGT+CGG + chr4_2:6482336-6482355 None:intergenic 40.0%
CCAAACTGACGCAAATATTC+CGG - chr4_2:6482605-6482624 Msa0585550:CDS 40.0%
CAAACTGACGCAAATATTCC+GGG - chr4_2:6482606-6482625 Msa0585550:CDS 40.0%
TAGAACCAATCATGTGCTTG+AGG - chr4_2:6482698-6482717 Msa0585550:intron 40.0%
! ATTGAACAAAGCTAGCCTAG+TGG + chr4_2:6482958-6482977 None:intergenic 40.0%
GACAGTTATAAAGGAACGGA+GGG + chr4_2:6482994-6483013 None:intergenic 40.0%
TGACAGTTATAAAGGAACGG+AGG + chr4_2:6482995-6483014 None:intergenic 40.0%
! TGGACAAAAGCATGTCTTCT+TGG + chr4_2:6483665-6483684 None:intergenic 40.0%
!! TGACTCTCATCTTAGCCTTT+TGG + chr4_2:6483685-6483704 None:intergenic 40.0%
AAGGCTAAGATGAGAGTCAA+TGG - chr4_2:6483686-6483705 Msa0585550:intron 40.0%
! CAGCTTTTGTCCTCACTAAA+TGG - chr4_2:6483723-6483742 Msa0585550:intron 40.0%
GTATCAATGAACATGCATGC+TGG - chr4_2:6483779-6483798 Msa0585550:intron 40.0%
! TAATAGTTGAAGGCATGTGG+TGG - chr4_2:6483840-6483859 Msa0585550:intron 40.0%
! AATAGTTGAAGGCATGTGGT+GGG - chr4_2:6483841-6483860 Msa0585550:intron 40.0%
ACAATGGGGCTAAAACTTAG+GGG + chr4_2:6483984-6484003 None:intergenic 40.0%
ACCGGTCAAAATTGGCAAAA+AGG + chr4_2:6484016-6484035 None:intergenic 40.0%
!! TTGGTTTTCTAGACATGGAG+TGG - chr4_2:6484719-6484738 Msa0585550:intron 40.0%
!!! GACACATGTCACTTTTGCAT+TGG + chr4_2:6484872-6484891 None:intergenic 40.0%
TTGCAATGGGGCTAAAACTT+AGG - chr4_2:6485119-6485138 Msa0585550:intron 40.0%
TGCAATGGGGCTAAAACTTA+GGG - chr4_2:6485120-6485139 Msa0585550:intron 40.0%
CAAACACAATACAGACACCA+TGG - chr4_2:6485277-6485296 Msa0585550:intron 40.0%
AGAGAAGAAAGAGAAAGGCA+TGG + chr4_2:6485370-6485389 None:intergenic 40.0%
GAAAAGATGAGAAGGATGGT+GGG + chr4_2:6485495-6485514 None:intergenic 40.0%
AGAAAAGATGAGAAGGATGG+TGG + chr4_2:6485496-6485515 None:intergenic 40.0%
GGAAGAAAAGATGAGAAGGA+TGG + chr4_2:6485499-6485518 None:intergenic 40.0%
!! TAATGGTTGTTGGTGTTGGA+CGG + chr4_2:6485625-6485644 None:intergenic 40.0%
AGAGTAATGGTTGTTGGTGT+TGG + chr4_2:6485629-6485648 None:intergenic 40.0%
!! GTTGTGTTCGATTTTGACGA+CGG - chr4_2:6485849-6485868 Msa0585550:intron 40.0%
TAACATGATGCAATGCAGGT+GGG - chr4_2:6486483-6486502 Msa0585550:intron 40.0%
ATGCTCAACATACTCATTGC+TGG - chr4_2:6486540-6486559 Msa0585550:intron 40.0%
TGCTCAACATACTCATTGCT+GGG - chr4_2:6486541-6486560 Msa0585550:intron 40.0%
GTTAGGAAACAAGGCCTAAA+TGG + chr4_2:6486915-6486934 None:intergenic 40.0%
!! TTTAGGCCTTGTTTCCTAAC+AGG - chr4_2:6486915-6486934 Msa0585550:CDS 40.0%
! CTCACACTTCTCGGATATTT+TGG - chr4_2:6486968-6486987 Msa0585550:CDS 40.0%
!! TCGGAAGTTTCTGGTTTGTT+CGG + chr4_2:6487068-6487087 None:intergenic 40.0%
TAGTTGTTTGCAGCAATTGC+TGG + chr4_2:6487190-6487209 None:intergenic 40.0%
TATCTCATAGCCCCTATTCT+TGG - chr4_2:6487226-6487245 Msa0585550:CDS 40.0%
!! TCATCTTCTGAAACTTCCAG+GGG + chr4_2:6487332-6487351 None:intergenic 40.0%
!! CATCATCTTCTGAAACTTCC+AGG + chr4_2:6487334-6487353 None:intergenic 40.0%
TGTGCATATGTAGCTAGCTA+GGG + chr4_2:6487489-6487508 None:intergenic 40.0%
! GACATTAGTTCTCTAGCATG+TGG - chr4_2:6487647-6487666 Msa0585550:intron 40.0%
TAAGCTATGAAACACGGAGA+CGG - chr4_2:6488009-6488028 Msa0585550:five_prime_UTR 40.0%
ACACGTCAAGCTTACAGATT+TGG - chr4_2:6488049-6488068 Msa0585550:five_prime_UTR 40.0%
TTGATTAGAGGGTGAGAGAG+AGG + chr4_2:6481100-6481119 None:intergenic 45.0%
GGCTTCAAATCTGAGAGAAC+TGG - chr4_2:6481249-6481268 Msa0585550:three_prime_UTR 45.0%
! GAAGACTGGACTTTGGAAGA+TGG - chr4_2:6481321-6481340 Msa0585550:three_prime_UTR 45.0%
GGCAAAGAGCAAGTGACTTT+AGG + chr4_2:6481354-6481373 None:intergenic 45.0%
GCAGAATCACAGTATGTCAC+CGG + chr4_2:6481619-6481638 None:intergenic 45.0%
CGCGGTTCAAATAGTAGTTG+TGG - chr4_2:6481679-6481698 Msa0585550:three_prime_UTR 45.0%
CTATAAACTCAGCTCCAACC+TGG + chr4_2:6481827-6481846 None:intergenic 45.0%
! CAGGTTGGAGCTGAGTTTAT+AGG - chr4_2:6481825-6481844 Msa0585550:CDS 45.0%
! ATTCATGAGTGGTGGTGTCA+CGG - chr4_2:6482226-6482245 Msa0585550:intron 45.0%
GCTTGGCCATATTCAACTGA+AGG + chr4_2:6482254-6482273 None:intergenic 45.0%
!! CATGTTTGTTGTCACTGCAG+TGG - chr4_2:6482307-6482326 Msa0585550:intron 45.0%
ATGGGTCAGATATTCCGGAA+CGG + chr4_2:6482419-6482438 None:intergenic 45.0%
CCGGAATATTTGCGTCAGTT+TGG + chr4_2:6482608-6482627 None:intergenic 45.0%
AAAATATACTCCCTCCGACC+CGG + chr4_2:6482627-6482646 None:intergenic 45.0%
!! GGTCGGAGGGAGTATATTTT+TGG - chr4_2:6482627-6482646 Msa0585550:intron 45.0%
CCAATCCTCAAGCACATGAT+TGG + chr4_2:6482706-6482725 None:intergenic 45.0%
CCAATCATGTGCTTGAGGAT+TGG - chr4_2:6482703-6482722 Msa0585550:intron 45.0%
! ATGTGCTTGAGGATTGGTGT+AGG - chr4_2:6482709-6482728 Msa0585550:intron 45.0%
CAATGGGGCTAAAACTTAGG+GGG + chr4_2:6485122-6485141 None:intergenic 45.0%
!! AAGCGTTGACCGGTCAAAAT+TGG + chr4_2:6484024-6484043 None:intergenic 45.0%
GAAGAGAACGAGAGTGAAAG+AGG + chr4_2:6484234-6484253 None:intergenic 45.0%
ATTTGGGGATTTATGGGTGG+AGG + chr4_2:6484262-6484281 None:intergenic 45.0%
!!! TTTCTGGTGTCGTGCTTTTC+TGG + chr4_2:6484420-6484439 None:intergenic 45.0%
!! AGGCGTTGACAGGTCAAAAT+TGG - chr4_2:6485081-6485100 Msa0585550:intron 45.0%
GCAATGGGGCTAAAACTTAG+GGG - chr4_2:6485121-6485140 Msa0585550:intron 45.0%
CAATGGGGCTAAAACTTAGG+GGG - chr4_2:6485122-6485141 Msa0585550:intron 45.0%
TGTGAACTAGAGGGGTAGTT+TGG - chr4_2:6485318-6485337 Msa0585550:intron 45.0%
CGGGAAGAGAAGAAAGAGAA+AGG + chr4_2:6485375-6485394 None:intergenic 45.0%
GGAGAGAAGAAGAGGTTAAC+GGG + chr4_2:6485394-6485413 None:intergenic 45.0%
GGGAGAGAAGAAGAGGTTAA+CGG + chr4_2:6485395-6485414 None:intergenic 45.0%
GGTGGTGAAATGTTGTTGCT+GGG + chr4_2:6485415-6485434 None:intergenic 45.0%
! TGGTGGTGAAATGTTGTTGC+TGG + chr4_2:6485416-6485435 None:intergenic 45.0%
GGACGGAAGAAAAGATGAGA+AGG + chr4_2:6485503-6485522 None:intergenic 45.0%
TAGTGTTTAGGAGGATGGGA+CGG + chr4_2:6485520-6485539 None:intergenic 45.0%
TGGCTAGTGTTTAGGAGGAT+GGG + chr4_2:6485524-6485543 None:intergenic 45.0%
!! GGTTGATGGTTGATGGTTGA+CGG + chr4_2:6485547-6485566 None:intergenic 45.0%
!! AAGAAGGGGTTGATGGTTGA+TGG + chr4_2:6485554-6485573 None:intergenic 45.0%
GGTGAAAAAGAAGGGGTTGA+TGG + chr4_2:6485561-6485580 None:intergenic 45.0%
!! AGAGGATGGTGGAAGAAAAG+AGG + chr4_2:6485582-6485601 None:intergenic 45.0%
GGGAAGAGAGTAATGGTTGT+TGG + chr4_2:6485635-6485654 None:intergenic 45.0%
ACCATTACTCTCTTCCCTCT+CGG - chr4_2:6485638-6485657 Msa0585550:intron 45.0%
!! TGTGAGTTCTAGATCCGAGA+GGG + chr4_2:6485655-6485674 None:intergenic 45.0%
GAATGAAAGAAAGCAGGAGG+TGG + chr4_2:6485775-6485794 None:intergenic 45.0%
AGATAAGCAGAGGAGTCACA+GGG - chr4_2:6485963-6485982 Msa0585550:intron 45.0%
GTGGTAACATGATGCAATGC+AGG - chr4_2:6486479-6486498 Msa0585550:intron 45.0%
GTAACATGATGCAATGCAGG+TGG - chr4_2:6486482-6486501 Msa0585550:intron 45.0%
GAGTATGTTGAGCATGACAG+TGG + chr4_2:6486535-6486554 None:intergenic 45.0%
! CTTTTCCACTCCACACTTCT+CGG + chr4_2:6487087-6487106 None:intergenic 45.0%
TTCATTGAAGCTCCAGTTGC+AGG + chr4_2:6487148-6487167 None:intergenic 45.0%
!! ACCAAGAGCACCAAGAATAG+GGG + chr4_2:6487239-6487258 None:intergenic 45.0%
!! CACCAAGAGCACCAAGAATA+GGG + chr4_2:6487240-6487259 None:intergenic 45.0%
!! CTATTCTTGGTGCTCTTGGT+GGG - chr4_2:6487239-6487258 Msa0585550:CDS 45.0%
!! TATTCTTGGTGCTCTTGGTG+GGG - chr4_2:6487240-6487259 Msa0585550:CDS 45.0%
GTGTGCATATGTAGCTAGCT+AGG + chr4_2:6487490-6487509 None:intergenic 45.0%
AGACGGACACAAACATGACA+CGG - chr4_2:6488026-6488045 Msa0585550:five_prime_UTR 45.0%
!! AAAAAAAAAACAATTATTAA+AGG - chr4_2:6483352-6483371 Msa0585550:intron 5.0%
!! TAAATAAAAAAATGATTATA+TGG + chr4_2:6484096-6484115 None:intergenic 5.0%
!! TAATTAAAAAAATGATTATA+TGG - chr4_2:6485009-6485028 Msa0585550:intron 5.0%
!! CAGGGGTAGAAGGTACTGAT+GGG + chr4_2:6481194-6481213 None:intergenic 50.0%
! ACTCCTGGTGCTCCTCTTTT+TGG - chr4_2:6481225-6481244 Msa0585550:three_prime_UTR 50.0%
! TTTTGGCAAGAGGGACAGGA+GGG + chr4_2:6481380-6481399 None:intergenic 50.0%
!! TTTTTGGCAAGAGGGACAGG+AGG + chr4_2:6481381-6481400 None:intergenic 50.0%
TCCTGTCCCTCTTGCCAAAA+AGG - chr4_2:6481380-6481399 Msa0585550:three_prime_UTR 50.0%
!! ACCTTTTTGGCAAGAGGGAC+AGG + chr4_2:6481384-6481403 None:intergenic 50.0%
ATTGGATGTGCTGGAGCTAC+TGG - chr4_2:6481924-6481943 Msa0585550:CDS 50.0%
GCAAATGAAATCGTGACGGC+TGG + chr4_2:6482008-6482027 None:intergenic 50.0%
GTGACACCACCACTCATGAA+TGG + chr4_2:6482227-6482246 None:intergenic 50.0%
CATGTATACTCCCTCCGTTC+CGG - chr4_2:6482402-6482421 Msa0585550:intron 50.0%
GTCAGATATTCCGGAACGGA+GGG + chr4_2:6482415-6482434 None:intergenic 50.0%
CTGACGCAAATATTCCGGGT+CGG - chr4_2:6482610-6482629 Msa0585550:CDS 50.0%
! TGAAGGCATGTGGTGGGATT+TGG - chr4_2:6483847-6483866 Msa0585550:intron 50.0%
GAACGAGAGTGAAAGAGGAG+AGG + chr4_2:6484229-6484248 None:intergenic 50.0%
TGTTGCTGGGAGAGAAGAAG+AGG + chr4_2:6485402-6485421 None:intergenic 50.0%
GTGGTTGTGACTGACAAGGA+CGG + chr4_2:6485457-6485476 None:intergenic 50.0%
GTGGCTAGTGTTTAGGAGGA+TGG + chr4_2:6485525-6485544 None:intergenic 50.0%
GTTGACGGTGGCTAGTGTTT+AGG + chr4_2:6485532-6485551 None:intergenic 50.0%
!! TGATGGTTGATGGTTGACGG+TGG + chr4_2:6485544-6485563 None:intergenic 50.0%
TCCGAGAGGGAAGAGAGTAA+TGG + chr4_2:6485642-6485661 None:intergenic 50.0%
!! GTGTGAGTTCTAGATCCGAG+AGG + chr4_2:6485656-6485675 None:intergenic 50.0%
! GGTGGTGGTGTTAATGTTGC+CGG + chr4_2:6485757-6485776 None:intergenic 50.0%
TGAAAGAAAGCAGGAGGTGG+TGG + chr4_2:6485772-6485791 None:intergenic 50.0%
!! GATTTTGACGACGGCGAGTT+TGG - chr4_2:6485858-6485877 Msa0585550:intron 50.0%
GTGGAGACTGAGAAACGAGA+GGG - chr4_2:6485880-6485899 Msa0585550:intron 50.0%
AGGGAGAGACTGAGTGAGAA+TGG - chr4_2:6485899-6485918 Msa0585550:intron 50.0%
GGGAGAGACTGAGTGAGAAT+GGG - chr4_2:6485900-6485919 Msa0585550:intron 50.0%
AGAGACTGAGTGAGAATGGG+CGG - chr4_2:6485903-6485922 Msa0585550:intron 50.0%
GGTGCGAAAGAGATAAGCAG+AGG - chr4_2:6485953-6485972 Msa0585550:intron 50.0%
GAGATAAGCAGAGGAGTCAC+AGG - chr4_2:6485962-6485981 Msa0585550:intron 50.0%
AATGCAGGTGGGAGAACTTG+CGG - chr4_2:6486494-6486513 Msa0585550:intron 50.0%
CCACACTTCTCGGAAGTTTC+TGG + chr4_2:6487077-6487096 None:intergenic 50.0%
CCAGAAACTTCCGAGAAGTG+TGG - chr4_2:6487074-6487093 Msa0585550:intron 50.0%
! AACTTCCGAGAAGTGTGGAG+TGG - chr4_2:6487079-6487098 Msa0585550:intron 50.0%
ATATACTGCAGGCCTGCAAC+TGG - chr4_2:6487133-6487152 Msa0585550:CDS 50.0%
GCTGGTCCTAGTGTTCTTAC+TGG + chr4_2:6487172-6487191 None:intergenic 50.0%
!! CCACCAAGAGCACCAAGAAT+AGG + chr4_2:6487241-6487260 None:intergenic 50.0%
!! CCTATTCTTGGTGCTCTTGG+TGG - chr4_2:6487238-6487257 Msa0585550:CDS 50.0%
TTCTCTAGCATGTGGCCTCT+GGG - chr4_2:6487655-6487674 Msa0585550:intron 50.0%
CATGTGGCCTCTGGGTATTT+GGG - chr4_2:6487663-6487682 Msa0585550:intron 50.0%
!! GCAGGGGTAGAAGGTACTGA+TGG + chr4_2:6481195-6481214 None:intergenic 55.0%
!! CCACCAAAAAGAGGAGCACC+AGG + chr4_2:6481231-6481250 None:intergenic 55.0%
! CCTGGTGCTCCTCTTTTTGG+TGG - chr4_2:6481228-6481247 Msa0585550:three_prime_UTR 55.0%
TTTGGCAAGAGGGACAGGAG+GGG + chr4_2:6481379-6481398 None:intergenic 55.0%
ACTCACAGCTCTTGTGTCGG+TGG + chr4_2:6482333-6482352 None:intergenic 55.0%
GGTCAGATATTCCGGAACGG+AGG + chr4_2:6482416-6482435 None:intergenic 55.0%
ACGCAAATATTCCGGGTCGG+AGG - chr4_2:6482613-6482632 Msa0585550:CDS 55.0%
CGCAAATATTCCGGGTCGGA+GGG - chr4_2:6482614-6482633 Msa0585550:CDS 55.0%
TTGACCGGTCAACGCTTACG+TGG - chr4_2:6484027-6484046 Msa0585550:intron 55.0%
TGGGGATTTATGGGTGGAGG+AGG + chr4_2:6484259-6484278 None:intergenic 55.0%
TTGACCTGTCAACGCCTACG+TGG + chr4_2:6485078-6485097 None:intergenic 55.0%
! ACTGACAAGGACGGTGTTGG+TGG + chr4_2:6485448-6485467 None:intergenic 55.0%
GTGACTGACAAGGACGGTGT+TGG + chr4_2:6485451-6485470 None:intergenic 55.0%
!! AGAAGGATGGTGGGTGTGGT+GGG + chr4_2:6485486-6485505 None:intergenic 55.0%
!! GATGAGAAGGATGGTGGGTG+TGG + chr4_2:6485490-6485509 None:intergenic 55.0%
GACGGTGGCTAGTGTTTAGG+AGG + chr4_2:6485529-6485548 None:intergenic 55.0%
!! TGGTTGTTGGTGTTGGACGG+AGG + chr4_2:6485622-6485641 None:intergenic 55.0%
AGTGGGAGATGAGGATGCGT+CGG + chr4_2:6485681-6485700 None:intergenic 55.0%
CCTCATCTCCCACTCGTCAA+CGG - chr4_2:6485687-6485706 Msa0585550:intron 55.0%
ACGGATCTCCGTTGACGAGT+GGG + chr4_2:6485698-6485717 None:intergenic 55.0%
AACGGATCTCCGTTGACGAG+TGG + chr4_2:6485699-6485718 None:intergenic 55.0%
TTTGACGACGGCGAGTTTGG+TGG - chr4_2:6485861-6485880 Msa0585550:intron 55.0%
GGTGGAGACTGAGAAACGAG+AGG - chr4_2:6485879-6485898 Msa0585550:intron 55.0%
CCATCACCGTCTCTGCAACT+CGG + chr4_2:6485932-6485951 None:intergenic 55.0%
! AGTTGCAGAGACGGTGATGG+TGG - chr4_2:6485932-6485951 Msa0585550:intron 55.0%
ATGCAGGTGGGAGAACTTGC+GGG - chr4_2:6486495-6486514 Msa0585550:intron 55.0%
!! GCCCCTATTCTTGGTGCTCT+TGG - chr4_2:6487235-6487254 Msa0585550:CDS 55.0%
GTTAAAGCCTCTTCTGCCCC+TGG - chr4_2:6487313-6487332 Msa0585550:intron 55.0%
GAAACTTCCAGGGGCAGAAG+AGG + chr4_2:6487323-6487342 None:intergenic 55.0%
GTTCTCTAGCATGTGGCCTC+TGG - chr4_2:6487654-6487673 Msa0585550:intron 55.0%
GCATGTGGCCTCTGGGTATT+TGG - chr4_2:6487662-6487681 Msa0585550:intron 55.0%
!! AGGAGTACCTGGGGTAGCAG+GGG + chr4_2:6481211-6481230 None:intergenic 60.0%
!! CAGGAGTACCTGGGGTAGCA+GGG + chr4_2:6481212-6481231 None:intergenic 60.0%
!! AGGAGCACCAGGAGTACCTG+GGG + chr4_2:6481220-6481239 None:intergenic 60.0%
!! GAGGAGCACCAGGAGTACCT+GGG + chr4_2:6481221-6481240 None:intergenic 60.0%
!! AGAGGAGCACCAGGAGTACC+TGG + chr4_2:6481222-6481241 None:intergenic 60.0%
TTGGCAAGAGGGACAGGAGG+GGG + chr4_2:6481378-6481397 None:intergenic 60.0%
!! CGTGCCACGTAAGCGTTGAC+CGG + chr4_2:6484034-6484053 None:intergenic 60.0%
!! GTTGGTGGTGGTTGTGGTGG+TGG + chr4_2:6485433-6485452 None:intergenic 60.0%
!! GGTGTTGGTGGTGGTTGTGG+TGG + chr4_2:6485436-6485455 None:intergenic 60.0%
!! GACGGTGTTGGTGGTGGTTG+TGG + chr4_2:6485439-6485458 None:intergenic 60.0%
!! GACAAGGACGGTGTTGGTGG+TGG + chr4_2:6485445-6485464 None:intergenic 60.0%
GGCGGTGGTTGTGACTGACA+AGG + chr4_2:6485461-6485480 None:intergenic 60.0%
!! GAGAAGGATGGTGGGTGTGG+TGG + chr4_2:6485487-6485506 None:intergenic 60.0%
! GGATGGTGGTGAGAGGATGG+TGG + chr4_2:6485593-6485612 None:intergenic 60.0%
! GGAGGATGGTGGTGAGAGGA+TGG + chr4_2:6485596-6485615 None:intergenic 60.0%
! GAGAGGAGGATGGTGGTGAG+AGG + chr4_2:6485600-6485619 None:intergenic 60.0%
TTGGACGGAGGAGAGGAGGA+TGG + chr4_2:6485610-6485629 None:intergenic 60.0%
!! GTTGGTGTTGGACGGAGGAG+AGG + chr4_2:6485617-6485636 None:intergenic 60.0%
CCGTTGACGAGTGGGAGATG+AGG + chr4_2:6485690-6485709 None:intergenic 60.0%
GGTCCACGATGGGTCTCAGA+CGG + chr4_2:6485727-6485746 None:intergenic 60.0%
TGAGACCCATCGTGGACCTC+CGG - chr4_2:6485729-6485748 Msa0585550:intron 60.0%
GGTGTTAATGTTGCCGGCGC+CGG + chr4_2:6485751-6485770 None:intergenic 60.0%
TCACCGTCTCTGCAACTCGG+TGG + chr4_2:6485929-6485948 None:intergenic 60.0%
CCGAGTTGCAGAGACGGTGA+TGG - chr4_2:6485929-6485948 Msa0585550:intron 60.0%
GGGAGAACTTGCGGGAATCG+CGG - chr4_2:6486503-6486522 Msa0585550:intron 60.0%
AGAACTTGCGGGAATCGCGG+TGG - chr4_2:6486506-6486525 Msa0585550:intron 60.0%
GAACTTGCGGGAATCGCGGT+GGG - chr4_2:6486507-6486526 Msa0585550:intron 60.0%
CCTGGGGTAGCAGGGGTAGA+AGG + chr4_2:6481204-6481223 None:intergenic 65.0%
CCTTCTACCCCTGCTACCCC+AGG - chr4_2:6481201-6481220 Msa0585550:three_prime_UTR 65.0%
!! CCAGGAGTACCTGGGGTAGC+AGG + chr4_2:6481213-6481232 None:intergenic 65.0%
CCTGCTACCCCAGGTACTCC+TGG - chr4_2:6481210-6481229 Msa0585550:three_prime_UTR 65.0%
ACACACGTGGCGTGCCACGT+AGG - chr4_2:6485061-6485080 Msa0585550:intron 65.0%
!! CGTGCCACGTAGGCGTTGAC+AGG - chr4_2:6485071-6485090 Msa0585550:intron 65.0%
!! GGATGGTGGGTGTGGTGGGA+CGG + chr4_2:6485482-6485501 None:intergenic 65.0%
GACGGAGGAGAGGAGGATGG+TGG + chr4_2:6485607-6485626 None:intergenic 65.0%
! GGTGTTGGACGGAGGAGAGG+AGG + chr4_2:6485614-6485633 None:intergenic 65.0%
GGGTCTCAGACGGCGGTGAA+CGG + chr4_2:6485717-6485736 None:intergenic 65.0%
CCACGATGGGTCTCAGACGG+CGG + chr4_2:6485724-6485743 None:intergenic 65.0%
! GTTAATGTTGCCGGCGCCGG+AGG + chr4_2:6485748-6485767 None:intergenic 65.0%
CGGCCACCGAGTTGCAGAGA+CGG - chr4_2:6485923-6485942 Msa0585550:intron 65.0%
!! CTTGGTGCTCTTGGTGGGGC+AGG - chr4_2:6487244-6487263 Msa0585550:CDS 65.0%
GCAAGAGGGACAGGAGGGGG+AGG + chr4_2:6481375-6481394 None:intergenic 70.0%
! TGGTGGGTGTGGTGGGACGG+CGG + chr4_2:6485479-6485498 None:intergenic 70.0%
! CCGCCGTCTGAGACCCATCG+TGG - chr4_2:6485721-6485740 Msa0585550:intron 70.0%
! TGGGTGTGGTGGGACGGCGG+TGG + chr4_2:6485476-6485495 None:intergenic 75.0%
! CGGCGCCGGAGGTCCACGAT+GGG + chr4_2:6485737-6485756 None:intergenic 75.0%
CCATCGTGGACCTCCGGCGC+CGG - chr4_2:6485735-6485754 Msa0585550:intron 75.0%
!! CCGGCGCCGGAGGTCCACGA+TGG + chr4_2:6485738-6485757 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 6481044 6488097 6481044 ID=Msa0585550;Name=Msa0585550
chr4_2 mRNA 6481044 6488097 6481044 ID=Msa0585550-mRNA-1;Parent=Msa0585550;Name=Msa0585550-mRNA-1;_AED=0.15;_eAED=0.15;_QI=130|1|1|1|1|1|5|746|306
chr4_2 exon 6481044 6481997 6481044 ID=Msa0585550-mRNA-1:exon:1579;Parent=Msa0585550-mRNA-1
chr4_2 exon 6482579 6482640 6482579 ID=Msa0585550-mRNA-1:exon:1578;Parent=Msa0585550-mRNA-1
chr4_2 exon 6486795 6486989 6486795 ID=Msa0585550-mRNA-1:exon:1577;Parent=Msa0585550-mRNA-1
chr4_2 exon 6487086 6487313 6487086 ID=Msa0585550-mRNA-1:exon:1576;Parent=Msa0585550-mRNA-1
chr4_2 exon 6487740 6488097 6487740 ID=Msa0585550-mRNA-1:exon:1575;Parent=Msa0585550-mRNA-1
chr4_2 five_prime_UTR 6487968 6488097 6487968 ID=Msa0585550-mRNA-1:five_prime_utr;Parent=Msa0585550-mRNA-1
chr4_2 CDS 6487740 6487967 6487740 ID=Msa0585550-mRNA-1:cds;Parent=Msa0585550-mRNA-1
chr4_2 CDS 6487086 6487313 6487086 ID=Msa0585550-mRNA-1:cds;Parent=Msa0585550-mRNA-1
chr4_2 CDS 6486795 6486989 6486795 ID=Msa0585550-mRNA-1:cds;Parent=Msa0585550-mRNA-1
chr4_2 CDS 6482579 6482640 6482579 ID=Msa0585550-mRNA-1:cds;Parent=Msa0585550-mRNA-1
chr4_2 CDS 6481790 6481997 6481790 ID=Msa0585550-mRNA-1:cds;Parent=Msa0585550-mRNA-1
chr4_2 three_prime_UTR 6481044 6481789 6481044 ID=Msa0585550-mRNA-1:three_prime_utr;Parent=Msa0585550-mRNA-1
Gene Sequence

>Msa0585550

ATGGACAATGAGGAAATCCCATCAGTACCTTCTACCCCTGCTACCCCAGGTACTCCTGGTGCTCCTCTTTTTGGTGGCTTCAAATCTGAGAGAACTGGAAATGGTAGAAAGAACTCACTCCTCAAGAATTTAAAATGTTTTAGTGTTGAAGACTGGACTTTGGAAGATGGAGCCTTACCTAAAGTCACTTGCTCTTTGCCTCCCCCTCCTGTCCCTCTTGCCAAAAAGGTTGGAGCTGAGTTTATAGGCACATACTACATTCTAATGTTTGCTGGAATAGCCACTGCAATTGTGAACCAAAAGATACATAACTCAGAAACACTAATTGGATGTGCTGGAGCTACTGGACTTGCTGTTATGATCATAATTTTATCAACTGGTCACATTTCTGGTGCTCATCTTAATCCAGCCGTCACGATTTCATTTGCTGCATTAAAACACTTCCCATGGAAAAATGTACCTTTGTATATTGCTGCACAAGTTTTGGCATCAATATGTGCTTCTTTTACTCTCAAAGGAGTTTTTCATCCATTCATGAGTGGTGGTGTCACGGTTCCTTCAGTTGAATATGGCCAAGCTTTTGCTTTAGAGTTTATTATCAGTTTTAATCTCATGTTTGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAACTTGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAACATACTCATTGCTGGGCCTGCAACTGGAGCTTCAATGAATCCAGTAAGAACACTAGGACCAGCAATTGCTGCAAACAACTACAAAGGCATATGGCTATATCTCATAGCCCCTATTCTTGGTGCTCTTGGTGGGGCAGGAGCTTACACTGCTGTCAAGCTTCCTGATGAAGAGTTTAACTCTGAGGTTAAAGCCTCTTCTGCCCCTGGAAGTTTCAGAAGATGA
Protein sequence

>Msa0585550

MDNEEIPSVPSTPATPGTPGAPLFGGFKSERTGNGRKNSLLKNLKCFSVEDWTLEDGALPKVTCSLPPPPVPLAKKVGAEFIGTYYILMFAGIATAIVNQKIHNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYIAAQVLASICASFTLKGVFHPFMSGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGASMNPVRTLGPAIAANNYKGIWLYLIAPILGALGGAGAYTAVKLPDEEFNSEVKASSAPGSFRR*