AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625710 MtrunA17_Chr4g0001221 99.672 305 1 0 1 305 1 305 0.0 611
Msa0625710 MtrunA17_Chr2g0333771 83.226 310 44 3 1 305 4 310 2.93e-176 489
Msa0625710 MtrunA17_Chr4g0001111 98.636 220 3 0 1 220 1 220 1.77e-158 441
Msa0625710 MtrunA17_Chr1g0201331 59.028 288 103 2 7 288 9 287 1.40e-112 327
Msa0625710 MtrunA17_Chr4g0001161 92.857 140 10 0 88 227 1 140 2.01e-88 260
Msa0625710 MtrunA17_Chr8g0379901 53.680 231 102 2 71 298 35 263 5.47e-78 238
Msa0625710 MtrunA17_Chr8g0379911 53.744 227 100 2 75 298 38 262 6.07e-77 236
Msa0625710 MtrunA17_Chr2g0284631 55.349 215 95 1 71 284 87 301 2.00e-73 229
Msa0625710 MtrunA17_Chr7g0217331 46.311 244 129 1 61 304 23 264 2.96e-73 226
Msa0625710 MtrunA17_Chr2g0284591 48.594 249 121 2 54 298 15 260 6.13e-72 223
Msa0625710 MtrunA17_Chr2g0284581 51.261 238 107 3 71 305 34 265 2.32e-71 221
Msa0625710 MtrunA17_Chr2g0284611 48.594 249 121 2 54 298 17 262 2.62e-71 221
Msa0625710 MtrunA17_Chr4g0001151 87.023 131 2 1 88 218 1 116 4.82e-70 220
Msa0625710 MtrunA17_Chr2g0284601 50.000 216 103 2 86 298 1 214 1.21e-62 197
Msa0625710 MtrunA17_Chr5g0435051 46.025 239 120 3 64 294 29 266 4.43e-61 195
Msa0625710 MtrunA17_Chr4g0044201 43.657 268 122 6 50 305 5 255 2.72e-60 192
Msa0625710 MtrunA17_Chr3g0079421 49.351 231 112 4 56 284 8 235 5.83e-59 189
Msa0625710 MtrunA17_Chr5g0426131 45.116 215 112 2 75 285 37 249 1.32e-58 188
Msa0625710 MtrunA17_Chr4g0001121 98.876 89 1 0 217 305 10 98 3.84e-55 174
Msa0625710 MtrunA17_Chr1g0184541 40.909 220 130 0 73 292 60 279 9.90e-49 164
Msa0625710 MtrunA17_Chr2g0331261 36.889 225 122 6 79 289 24 242 3.68e-32 119
Msa0625710 MtrunA17_Chr1g0146161 37.073 205 109 7 80 272 24 220 1.35e-29 112
Msa0625710 MtrunA17_Chr8g0340161 36.232 207 114 5 79 272 23 224 2.64e-28 109
Msa0625710 MtrunA17_Chr1g0146171 35.610 205 112 7 80 272 24 220 5.76e-26 103
Msa0625710 MtrunA17_Chr1g0188771 34.404 218 135 3 79 288 25 242 4.22e-25 101
Msa0625710 MtrunA17_Chr5g0399341 35.122 205 118 4 79 272 23 223 1.03e-23 97.4
Msa0625710 MtrunA17_Chr6g0478191 32.110 218 140 3 79 288 25 242 1.91e-23 96.7
Msa0625710 MtrunA17_Chr2g0326621 29.520 271 149 7 68 304 22 284 4.53e-21 90.9
Msa0625710 MtrunA17_Chr3g0145671 29.545 264 151 9 68 304 19 274 6.03e-21 90.5
Msa0625710 MtrunA17_Chr1g0212671 29.817 218 145 3 79 288 25 242 1.40e-20 89.0
Msa0625710 MtrunA17_Chr4g0030861 31.188 202 131 3 80 273 26 227 1.40e-19 86.3
Msa0625710 MtrunA17_Chr7g0264961 33.981 206 119 5 79 272 25 225 3.67e-19 85.1
Msa0625710 MtrunA17_Chr7g0264111 27.407 270 155 8 68 304 21 282 1.92e-18 83.6
Msa0625710 MtrunA17_Chr3g0113211 28.279 244 147 8 68 283 37 280 1.15e-17 81.6
Msa0625710 MtrunA17_Chr8g0386961 28.205 234 140 8 68 273 34 267 1.19e-16 78.6
Msa0625710 MtrunA17_Chr4g0006001 28.302 212 134 6 79 273 60 270 3.83e-16 77.0
Msa0625710 MtrunA17_Chr5g0397391 28.302 212 135 6 79 273 56 267 6.09e-16 76.6
Msa0625710 MtrunA17_Chr7g0222791 27.523 218 150 3 79 288 25 242 9.45e-16 75.5
Msa0625710 MtrunA17_Chr5g0436701 26.923 234 143 7 68 273 37 270 1.87e-15 75.1
Msa0625710 MtrunA17_Chr4g0029071 26.838 272 154 8 68 304 21 282 2.07e-15 75.1
Msa0625710 MtrunA17_Chr4g0020781 29.524 210 132 5 103 304 12 213 2.51e-14 70.9
Msa0625710 MtrunA17_Chr1g0199731 25.185 270 161 8 68 304 21 282 2.00e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625710 AT1G80760.1 76.129 310 64 5 1 305 1 305 4.25e-161 451
Msa0625710 AT4G10380.1 69.200 250 67 3 43 288 48 291 4.72e-116 337
Msa0625710 AT4G19030.1 46.643 283 140 4 33 304 10 292 5.47e-76 234
Msa0625710 AT5G37820.1 47.967 246 124 3 55 298 24 267 7.12e-72 223
Msa0625710 AT5G37820.2 44.565 276 144 5 27 298 33 303 1.09e-71 224
Msa0625710 AT4G18910.1 44.178 292 143 5 29 304 2 289 1.73e-71 223
Msa0625710 AT5G37810.1 47.347 245 125 3 56 298 25 267 2.50e-69 217
Msa0625710 AT1G31885.1 45.161 248 128 2 65 304 33 280 1.15e-65 209
Msa0625710 AT1G31885.2 46.018 226 114 2 87 304 1 226 2.68e-60 193
Msa0625710 AT2G34390.1 40.942 276 144 6 43 305 13 282 2.55e-55 181
Msa0625710 AT4G19030.3 46.977 215 103 4 33 236 10 224 8.26e-53 172
Msa0625710 AT2G34390.2 43.882 237 117 5 79 305 10 240 1.50e-52 173
Msa0625710 AT4G18910.2 44.889 225 104 5 29 237 2 222 8.47e-49 162
Msa0625710 AT4G19030.2 44.898 196 97 4 33 217 10 205 7.10e-42 144
Msa0625710 AT3G06100.1 37.736 212 131 1 75 285 46 257 7.28e-42 146
Msa0625710 AT3G06100.2 37.850 214 126 3 79 288 2 212 2.85e-41 143
Msa0625710 AT2G34390.3 39.423 208 110 4 43 237 13 217 2.53e-35 127
Msa0625710 AT3G16240.1 37.198 207 112 5 79 272 23 224 1.37e-30 115
Msa0625710 AT2G34390.4 37.895 190 102 4 43 219 13 199 3.23e-28 108
Msa0625710 AT2G25810.1 34.928 209 118 6 75 272 19 220 2.14e-27 107
Msa0625710 AT2G29870.1 47.826 115 57 1 191 305 22 133 5.77e-26 100
Msa0625710 AT5G47450.1 34.361 227 123 7 79 284 23 244 2.69e-25 102
Msa0625710 AT4G17340.1 33.816 207 119 5 79 272 23 224 5.02e-24 98.6
Msa0625710 AT3G26520.1 32.314 229 136 5 79 294 26 248 1.11e-21 92.4
Msa0625710 AT2G36830.1 33.816 207 119 5 79 272 25 226 7.97e-21 89.7
Msa0625710 AT4G35100.1 29.242 277 161 9 55 304 7 275 9.41e-20 87.4
Msa0625710 AT4G35100.2 29.242 277 161 9 55 304 7 275 9.41e-20 87.4
Msa0625710 AT3G06100.3 33.813 139 91 1 151 288 41 179 1.14e-19 85.5
Msa0625710 AT2G16850.1 28.731 268 148 9 68 304 18 273 2.55e-18 83.6
Msa0625710 AT1G17810.1 30.357 224 139 6 79 287 28 249 9.96e-18 81.6
Msa0625710 AT1G73190.1 29.596 223 144 3 79 288 28 250 1.22e-17 81.3
Msa0625710 AT4G01470.1 28.755 233 140 6 79 290 25 252 1.53e-17 80.9
Msa0625710 AT5G60660.1 28.444 225 137 6 72 273 36 259 1.67e-17 81.3
Msa0625710 AT3G53420.1 26.568 271 156 8 68 304 21 282 9.04e-17 79.3
Msa0625710 AT3G53420.2 26.568 271 156 8 68 304 21 282 9.04e-17 79.3
Msa0625710 AT4G00430.1 29.060 234 137 8 68 273 35 267 1.01e-16 79.3
Msa0625710 AT2G37170.1 26.568 271 156 8 68 304 19 280 1.07e-16 79.0
Msa0625710 AT4G23400.1 29.717 212 131 6 79 273 57 267 1.31e-16 79.0
Msa0625710 AT1G31885.3 43.678 87 49 0 65 151 33 119 1.41e-16 75.5
Msa0625710 AT3G54820.1 29.259 270 150 8 68 304 20 281 1.96e-16 78.2
Msa0625710 AT2G37170.2 26.568 271 156 8 68 304 62 323 2.15e-16 79.0
Msa0625710 AT1G01620.1 29.717 212 131 6 79 273 56 266 2.43e-16 78.2
Msa0625710 AT2G45960.1 29.487 234 136 8 68 273 34 266 2.43e-16 78.2
Msa0625710 AT3G61430.2 30.516 213 128 7 79 273 56 266 1.46e-15 75.9
Msa0625710 AT3G61430.1 30.516 213 128 7 79 273 56 266 1.46e-15 75.9
Msa0625710 AT2G37180.1 26.199 271 157 8 68 304 19 280 2.26e-15 75.5
Msa0625710 AT2G39010.1 27.574 272 156 8 66 304 18 281 7.42e-14 70.9
Msa0625710 AT2G45960.2 30.093 216 125 7 68 258 34 248 7.55e-14 70.9
Msa0625710 AT3G47440.1 27.477 222 146 5 79 289 27 244 8.51e-14 70.5
Msa0625710 AT2G45960.3 30.093 216 125 7 68 258 34 248 9.04e-14 70.9
Msa0625710 AT1G01620.2 30.726 179 109 5 109 273 17 194 1.78e-13 68.9

Find 97 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCAACTGGTCACATTTC+TGG 0.140657 4_3:-4921289 Msa0625710:CDS
GCATGTGGCCTCTGTGTATT+TGG 0.148680 4_3:-4918111 Msa0625710:three_prime_UTR
TGAAACCTCGGAATTATTAT+TGG 0.183631 4_3:+4917899 None:intergenic
TCCTGTCCCTCTTGCCAAAA+AGG 0.248434 4_3:-4923097 Msa0625710:intron
GCTGGTCCTAGTGTTCTTAC+TGG 0.259920 4_3:+4918603 None:intergenic
TTGTCTTGATATATGTTAAT+TGG 0.261886 4_3:+4923430 None:intergenic
TCTGTGTATTTGGGTTTAAT+AGG 0.281010 4_3:-4918101 Msa0625710:three_prime_UTR
TTTCTGAGTTATGTATCTTT+TGG 0.287885 4_3:+4921362 None:intergenic
CATAACTCAGAAACACTAAT+TGG 0.296495 4_3:-4921352 Msa0625710:CDS
GCCCCTATTCTTGGTGCTCT+TGG 0.301422 4_3:-4918537 Msa0625710:CDS
TTCATTGAAGCTCCAGTTGC+AGG 0.320017 4_3:+4918627 None:intergenic
GTATATTGCTGCACAAGTTT+TGG 0.323183 4_3:-4921098 Msa0625710:CDS
ATTATAGAGTGATTAGAGTA+TGG 0.330011 4_3:-4923322 Msa0625710:exon
CATCATCTTCTGAAACTTCC+AGG 0.332213 4_3:+4918441 None:intergenic
CAGGTTGGAGCTGAGTTTAT+AGG 0.341644 4_3:-4921430 Msa0625710:CDS
CCAGGAGTACCTGGGGTAGC+AGG 0.347255 4_3:+4923267 None:intergenic
CTTGGTGCTCTTGGTGGGGC+AGG 0.355406 4_3:-4918528 Msa0625710:CDS
TATCTCATAGCCCCTATTCT+TGG 0.361100 4_3:-4918546 Msa0625710:CDS
ACGGTTCCTTCAGTTGAATA+TGG 0.365783 4_3:-4921013 Msa0625710:CDS
CACCAAGAGCACCAAGAATA+GGG 0.367072 4_3:+4918535 None:intergenic
CCTGGGGTAGCAGGGGTAGA+AGG 0.377162 4_3:+4923276 None:intergenic
CAAAGTGTAGAATTGATTAG+AGG 0.382003 4_3:+4923368 None:intergenic
ATCAATTCTACACTTTGCTT+TGG 0.386576 4_3:-4923362 Msa0625710:five_prime_UTR
CATGTGGCCTCTGTGTATTT+GGG 0.386744 4_3:-4918110 Msa0625710:three_prime_UTR
ATATACTGCAGGCCTGCAAC+TGG 0.394672 4_3:-4918639 Msa0625710:intron
TAGTTGTTTGCAGCAATTGC+TGG 0.400189 4_3:+4918585 None:intergenic
ATGCTCAACATACTCATTGC+TGG 0.401599 4_3:-4919232 Msa0625710:CDS
TTGGCAAGAGGGACAGGAGG+GGG 0.402167 4_3:+4923102 None:intergenic
CCTATTCTTGGTGCTCTTGG+TGG 0.402986 4_3:-4918534 Msa0625710:CDS
CCACCAAGAGCACCAAGAAT+AGG 0.407883 4_3:+4918534 None:intergenic
ATTGGATGTGCTGGAGCTAC+TGG 0.408901 4_3:-4921334 Msa0625710:CDS
CTATTCTTGGTGCTCTTGGT+GGG 0.417084 4_3:-4918533 Msa0625710:CDS
AGAGGAGCACCAGGAGTACC+TGG 0.426312 4_3:+4923258 None:intergenic
GGCAAAGAGCAAGTGACTTT+AGG 0.427110 4_3:+4923126 None:intergenic
TTCTGGTGCTCATCTTAATC+CGG 0.430743 4_3:-4921272 Msa0625710:CDS
ACATACATTCTAATGTTTGC+TGG 0.431868 4_3:-4921406 Msa0625710:CDS
ATACAAAGATTCTAATTAAG+AGG 0.432938 4_3:+4918378 None:intergenic
GGCTTCAAATCTGAGAGAAC+TGG 0.434296 4_3:-4923228 Msa0625710:CDS
ATGCAGGTGGGAGAACTTGC+GGG 0.438650 4_3:-4919277 Msa0625710:intron
CTGATTTATGTTTATCAAAG+AGG 0.449306 4_3:+4918249 None:intergenic
CCTGCTACCCCAGGTACTCC+TGG 0.460634 4_3:-4923267 Msa0625710:CDS
AAATCTGAGAGAACTGGAAA+TGG 0.466281 4_3:-4923222 Msa0625710:CDS
CTGCATTAAAACACTTCCCA+TGG 0.472333 4_3:-4921231 Msa0625710:CDS
TCAGAGTTAAACTCTTCATC+AGG 0.475612 4_3:+4918483 None:intergenic
GAAACACTAATTGGATGTGC+TGG 0.482781 4_3:-4921343 Msa0625710:CDS
GTGTGCATATGTAGCTAGCT+AGG 0.482837 4_3:+4918287 None:intergenic
CAAACAACTACAAAGGCATA+TGG 0.493499 4_3:-4918572 Msa0625710:CDS
GTGACACCGCCACTCATGAA+TGG 0.505279 4_3:+4921034 None:intergenic
TATTCTTGGTGCTCTTGGTG+GGG 0.515515 4_3:-4918532 Msa0625710:CDS
GAAGACTGGACTTTGGAAGA+TGG 0.520509 4_3:-4923156 Msa0625710:CDS
CAGGAGTACCTGGGGTAGCA+GGG 0.521311 4_3:+4923268 None:intergenic
ATCATCTTCTGAAACTTCCA+GGG 0.521569 4_3:+4918442 None:intergenic
GAAACTTCCAGGGGCAGAAG+AGG 0.526255 4_3:+4918452 None:intergenic
GTTAAAGCCTCTTCTGCCCC+TGG 0.527500 4_3:-4918459 Msa0625710:CDS
TGCTCAACATACTCATTGCT+GGG 0.532589 4_3:-4919231 Msa0625710:intron
AAAGTGTAGAATTGATTAGA+GGG 0.534927 4_3:+4923369 None:intergenic
TAAACTCTAAAGCAAAAGCT+TGG 0.536190 4_3:+4920990 None:intergenic
TAGTGTTGAAGACTGGACTT+TGG 0.539097 4_3:-4923163 Msa0625710:CDS
AACACAAAATTATATTCTCA+TGG 0.549209 4_3:+4918060 None:intergenic
TTGATTAGAGGGTGAGAGAG+AGG 0.554033 4_3:+4923380 None:intergenic
GAACTTGCGGGAATCGCGGT+GGG 0.555721 4_3:-4919265 Msa0625710:CDS
CCTTCTACCCCTGCTACCCC+AGG 0.557794 4_3:-4923276 Msa0625710:CDS
ATTCATGAGTGGCGGTGTCA+CGG 0.561634 4_3:-4921032 Msa0625710:CDS
GCAGGGGTAGAAGGTACTGA+TGG 0.572195 4_3:+4923285 None:intergenic
GCAAATGAAATCGTAACGGC+CGG 0.573791 4_3:+4921253 None:intergenic
GCTTGGCCATATTCAACTGA+AGG 0.575237 4_3:+4921007 None:intergenic
GGGAGAACTTGCGGGAATCG+CGG 0.575910 4_3:-4919269 Msa0625710:CDS
TGATTAGAGTATGGACAATG+AGG 0.583019 4_3:-4923313 Msa0625710:exon
AGAGCAAGTGACTTTAGGTA+AGG 0.585846 4_3:+4923131 None:intergenic
AGAACTTGCGGGAATCGCGG+TGG 0.586192 4_3:-4919266 Msa0625710:CDS
ATGAATCCAGTAAGAACACT+AGG 0.586393 4_3:-4918609 Msa0625710:CDS
AATGCAGGTGGGAGAACTTG+CGG 0.593498 4_3:-4919278 Msa0625710:intron
ACCAAGAGCACCAAGAATAG+GGG 0.596229 4_3:+4918536 None:intergenic
TGTGCATATGTAGCTAGCTA+GGG 0.601836 4_3:+4918288 None:intergenic
GACATTAGTTCTCTAGCATG+TGG 0.604049 4_3:-4918126 Msa0625710:three_prime_UTR
AGGAGTACCTGGGGTAGCAG+GGG 0.604848 4_3:+4923269 None:intergenic
TTTGGCAAGAGGGACAGGAG+GGG 0.604963 4_3:+4923101 None:intergenic
GAGGAGCACCAGGAGTACCT+GGG 0.605523 4_3:+4923259 None:intergenic
AGGAGCACCAGGAGTACCTG+GGG 0.605545 4_3:+4923260 None:intergenic
TGATGAAGAGTTTAACTCTG+AGG 0.607367 4_3:-4918481 Msa0625710:CDS
CATGTTTGTTGTCACTGCAG+TGG 0.612813 4_3:-4920951 Msa0625710:CDS
GAAATCCAATAATAATTCCG+AGG 0.615531 4_3:-4917904 Msa0625710:three_prime_UTR
TATTTGTAGCATCAATCTCA+AGG 0.615683 4_3:-4923403 Msa0625710:five_prime_UTR
TTTCATCCATTCATGAGTGG+CGG 0.617113 4_3:-4921040 Msa0625710:CDS
ACTCACAGCTCTTGTGTCGG+TGG 0.621849 4_3:+4920928 None:intergenic
CAGGGGTAGAAGGTACTGAT+GGG 0.623548 4_3:+4923286 None:intergenic
GTATTTCCGAGACAAAATGA+AGG 0.640064 4_3:-4917961 Msa0625710:three_prime_UTR
CTATCTCTAGTAATAAACAA+TGG 0.645773 4_3:+4918030 None:intergenic
TGCAGCAAATGAAATCGTAA+CGG 0.652099 4_3:+4921249 None:intergenic
TCATCTTCTGAAACTTCCAG+GGG 0.658967 4_3:+4918443 None:intergenic
ATTGCTGCAAACAACTACAA+AGG 0.670460 4_3:-4918579 Msa0625710:CDS
TATACTCACAGCTCTTGTGT+CGG 0.676515 4_3:+4920925 None:intergenic
ACTTGTGCAGCAATATACAA+AGG 0.678381 4_3:+4921103 None:intergenic
AGACAGACACAAATATGACA+CGG 0.705806 4_3:-4917738 Msa0625710:three_prime_UTR
AAGATGATGAATCATTCACA+AGG 0.712240 4_3:-4918427 Msa0625710:exon
GAGTATGTTGAGCATGACAG+TGG 0.737398 4_3:+4919240 None:intergenic
TATTAAACCCAAATACACAG+AGG 0.763693 4_3:+4918103 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAATATTAA+AGG - chr4_3:4920673-4920692 Msa0625710:intron 0.0%
!! TAATAAAAATATATATTTAA+TGG + chr4_3:4922035-4922054 None:intergenic 0.0%
!!! ATTGTCTTTTATTTTATTTT+AGG + chr4_3:4919376-4919395 None:intergenic 10.0%
!! AAATAAAACTAAACTAAATA+AGG - chr4_3:4919451-4919470 Msa0625710:intron 10.0%
!!! TAATTTTGTGAATTAATTTT+AGG - chr4_3:4920000-4920019 Msa0625710:intron 10.0%
!!! TAAAACATTTTAAATTCTTG+AGG + chr4_3:4917947-4917966 None:intergenic 15.0%
!!! AATTAAAATATGTACCTTTT+TGG + chr4_3:4918048-4918067 None:intergenic 15.0%
!! TTAAATGTTATAGAGAATTA+CGG - chr4_3:4918143-4918162 Msa0625710:three_prime_UTR 15.0%
!!! ACTTAAACATCTAATTTTAT+GGG - chr4_3:4918535-4918554 Msa0625710:CDS 15.0%
!! ATAAAAGAGCAATAATATAA+AGG - chr4_3:4919035-4919054 Msa0625710:intron 15.0%
!!! TTATTTTAGGAATGAATATA+TGG + chr4_3:4919363-4919382 None:intergenic 15.0%
!! TTTAGTACATGTTAAAATTA+GGG + chr4_3:4919523-4919542 None:intergenic 15.0%
!!! TTTTAGTACATGTTAAAATT+AGG + chr4_3:4919524-4919543 None:intergenic 15.0%
!! AAAGTTCTTATAAAAGAATA+TGG + chr4_3:4920246-4920265 None:intergenic 15.0%
!!! ATACTTTGTTTAAGAAAATA+AGG - chr4_3:4920380-4920399 Msa0625710:intron 15.0%
!! ATAATTAGAAACAAATAAAG+AGG - chr4_3:4920444-4920463 Msa0625710:intron 15.0%
!! TAATTAGAAACAAATAAAGA+GGG - chr4_3:4920445-4920464 Msa0625710:intron 15.0%
!!! AATGAAGTATTAAATGATTA+AGG - chr4_3:4921369-4921388 Msa0625710:CDS 15.0%
!! TAAATGATTAAGGTTATTAT+AGG - chr4_3:4921379-4921398 Msa0625710:CDS 15.0%
!! ACACAATATAATTAAATAAG+TGG + chr4_3:4921629-4921648 None:intergenic 15.0%
!! TGTCAAAAAAAACAATAATA+TGG + chr4_3:4921775-4921794 None:intergenic 15.0%
!!! ATTATTGTTTTTTTTGACAA+AGG - chr4_3:4921776-4921795 Msa0625710:intron 15.0%
!!! TAATTTTCTCAAATTATTAG+CGG + chr4_3:4923427-4923446 None:intergenic 15.0%
!! TTGTCTTGATATATGTTAAT+TGG + chr4_3:4917701-4917720 None:intergenic 20.0%
!!! TACTAACATGATTTTTGTAA+AGG - chr4_3:4918218-4918237 Msa0625710:three_prime_UTR 20.0%
!!! GTGTAACATTTTTTAAAATC+CGG - chr4_3:4918248-4918267 Msa0625710:three_prime_UTR 20.0%
!!! TCTTTTATTATTATTGTTGG+GGG + chr4_3:4918466-4918485 None:intergenic 20.0%
!!! CTCTTTTATTATTATTGTTG+GGG + chr4_3:4918467-4918486 None:intergenic 20.0%
!!! GCTCTTTTATTATTATTGTT+GGG + chr4_3:4918468-4918487 None:intergenic 20.0%
!! AATAATAATAAAAGAGCCTT+GGG - chr4_3:4918471-4918490 Msa0625710:CDS 20.0%
!!! GACTTAAACATCTAATTTTA+TGG - chr4_3:4918534-4918553 Msa0625710:CDS 20.0%
!! TGAATCTAGATTAGAAATTA+GGG - chr4_3:4918879-4918898 Msa0625710:intron 20.0%
!! TACATGGTAAAAAAGTTAAT+AGG - chr4_3:4919610-4919629 Msa0625710:intron 20.0%
!! ACATGGTAAAAAAGTTAATA+GGG - chr4_3:4919611-4919630 Msa0625710:intron 20.0%
!! CACATCAATATATCAAAAAT+AGG + chr4_3:4919639-4919658 None:intergenic 20.0%
!! ATGTGTTAAATAATGTAGTT+GGG - chr4_3:4919654-4919673 Msa0625710:intron 20.0%
!!! ATGATCATAATTTTATCAAC+TGG - chr4_3:4919827-4919846 Msa0625710:intron 20.0%
!! TGAATTAGAAGATGAATTTA+GGG + chr4_3:4919946-4919965 None:intergenic 20.0%
!! TTGAATTAGAAGATGAATTT+AGG + chr4_3:4919947-4919966 None:intergenic 20.0%
!!! TAGTCTTGCATATATATTTT+TGG - chr4_3:4920265-4920284 Msa0625710:intron 20.0%
!! AAGATATCAAAAGTAATGAT+TGG + chr4_3:4920527-4920546 None:intergenic 20.0%
!!! TAAAGGTACAATTGTATATA+TGG - chr4_3:4920690-4920709 Msa0625710:intron 20.0%
!!! TCTTTTTGGATTCAATTTTA+AGG + chr4_3:4920925-4920944 None:intergenic 20.0%
!!! TTTTATATATCCATTTAGTG+AGG + chr4_3:4921024-4921043 None:intergenic 20.0%
!! TACAAAAGTGACAATTATAA+AGG + chr4_3:4921242-4921261 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG + chr4_3:4921329-4921348 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG - chr4_3:4921465-4921484 Msa0625710:intron 20.0%
!!! AGTTTTGATAAATTACAGTT+TGG - chr4_3:4921713-4921732 Msa0625710:intron 20.0%
!!! TTTATATCATTTGTTTTGTC+GGG + chr4_3:4922218-4922237 None:intergenic 20.0%
!!! GTTTATATCATTTGTTTTGT+CGG + chr4_3:4922219-4922238 None:intergenic 20.0%
!! ATACAAAGATTCTAATTAAG+AGG + chr4_3:4922753-4922772 None:intergenic 20.0%
!! AACACAAAATTATATTCTCA+TGG + chr4_3:4923071-4923090 None:intergenic 20.0%
!!! AATATAATTTTGTGTTAGTG+AGG - chr4_3:4923075-4923094 Msa0625710:intron 20.0%
! AAAGTGTAGAATTGATTAGA+GGG + chr4_3:4917762-4917781 None:intergenic 25.0%
! ATTATAGAGTGATTAGAGTA+TGG - chr4_3:4917806-4917825 Msa0625710:three_prime_UTR 25.0%
! AGAGAAGAAAGCTTATAAAA+AGG - chr4_3:4918395-4918414 Msa0625710:three_prime_UTR 25.0%
! GAGAAGAAAGCTTATAAAAA+GGG - chr4_3:4918396-4918415 Msa0625710:three_prime_UTR 25.0%
! AGAAGAAAGCTTATAAAAAG+GGG - chr4_3:4918397-4918416 Msa0625710:three_prime_UTR 25.0%
!! GGCTCTTTTATTATTATTGT+TGG + chr4_3:4918469-4918488 None:intergenic 25.0%
! CAATAATAATAAAAGAGCCT+TGG - chr4_3:4918470-4918489 Msa0625710:CDS 25.0%
! GATTAACAATTATCAAACTG+TGG + chr4_3:4918846-4918865 None:intergenic 25.0%
! ATTGTTAATCCATGTTAAGA+CGG - chr4_3:4918856-4918875 Msa0625710:intron 25.0%
! GTGAATCTAGATTAGAAATT+AGG - chr4_3:4918878-4918897 Msa0625710:intron 25.0%
! ATTAGGGTTACATAGAAATT+AGG - chr4_3:4918895-4918914 Msa0625710:intron 25.0%
! TTAGGGTTACATAGAAATTA+GGG - chr4_3:4918896-4918915 Msa0625710:intron 25.0%
! TTACATAGAAATTAGGGTTT+AGG - chr4_3:4918902-4918921 Msa0625710:intron 25.0%
!! AAACATTCATCTTTTGTTCT+TGG + chr4_3:4919073-4919092 None:intergenic 25.0%
! GAACAAAAGATGAATGTTTA+TGG - chr4_3:4919074-4919093 Msa0625710:intron 25.0%
! TTAAAATCTAAGCAACTACA+AGG - chr4_3:4919132-4919151 Msa0625710:intron 25.0%
! TAAAATCTAAGCAACTACAA+GGG - chr4_3:4919133-4919152 Msa0625710:intron 25.0%
!!! TTTTAGGAATGAATATATGG+TGG + chr4_3:4919360-4919379 None:intergenic 25.0%
! TGTTAAAATTAGGGTGTATT+TGG + chr4_3:4919514-4919533 None:intergenic 25.0%
! CATGGTAAAAAAGTTAATAG+GGG - chr4_3:4919612-4919631 Msa0625710:intron 25.0%
! GATGTGTTAAATAATGTAGT+TGG - chr4_3:4919653-4919672 Msa0625710:intron 25.0%
! GATTAATGTAATCATTTACC+AGG - chr4_3:4919679-4919698 Msa0625710:intron 25.0%
!! TTTCTGAGTTATGTATCTTT+TGG + chr4_3:4919769-4919788 None:intergenic 25.0%
!!! TTGTTGTTACATTTTTCCAT+GGG + chr4_3:4919916-4919935 None:intergenic 25.0%
!!! TTTGTTGTTACATTTTTCCA+TGG + chr4_3:4919917-4919936 None:intergenic 25.0%
! TTTGTGAAATCAATTTCTGA+TGG + chr4_3:4920656-4920675 None:intergenic 25.0%
! AATACTAACATATGTCCTTA+TGG - chr4_3:4920755-4920774 Msa0625710:intron 25.0%
! ATGTTCATTGATACAATTAG+TGG + chr4_3:4921061-4921080 None:intergenic 25.0%
! TCTATACTGATAATAGTTGA+AGG - chr4_3:4921118-4921137 Msa0625710:intron 25.0%
! AAGTGACAATTATAAAGGAA+CGG + chr4_3:4921237-4921256 None:intergenic 25.0%
!! GTTCAAAGTATCATTAAATG+TGG - chr4_3:4921298-4921317 Msa0625710:CDS 25.0%
! TCTCTGCAATAAATATATAG+GGG + chr4_3:4921338-4921357 None:intergenic 25.0%
! CTCTCTGCAATAAATATATA+GGG + chr4_3:4921339-4921358 None:intergenic 25.0%
! TCTCTCTGCAATAAATATAT+AGG + chr4_3:4921340-4921359 None:intergenic 25.0%
!!! AGTAAAAGTATTTGTTGTCT+TGG - chr4_3:4921429-4921448 Msa0625710:CDS 25.0%
! CGAATGTGATTAAAATAATG+AGG + chr4_3:4921941-4921960 None:intergenic 25.0%
! TTTAACTCTTAAAGCAAATG+AGG + chr4_3:4922151-4922170 None:intergenic 25.0%
! CTAGACACTAAAATATTTAG+TGG - chr4_3:4922174-4922193 Msa0625710:intron 25.0%
! AAAGATCCAATATTCCATTT+AGG - chr4_3:4922254-4922273 Msa0625710:intron 25.0%
! GAAATTCAGACATGTAAAAA+AGG - chr4_3:4922361-4922380 Msa0625710:intron 25.0%
! AAATACATACACGTAAAAAC+AGG + chr4_3:4922395-4922414 None:intergenic 25.0%
! CTGATTTATGTTTATCAAAG+AGG + chr4_3:4922882-4922901 None:intergenic 25.0%
!!! AAAACAGCACTGATTTTTTT+TGG + chr4_3:4922958-4922977 None:intergenic 25.0%
! CTATCTCTAGTAATAAACAA+TGG + chr4_3:4923101-4923120 None:intergenic 25.0%
! GCAAAAATAAAATGAAACCT+CGG + chr4_3:4923244-4923263 None:intergenic 25.0%
!!! TTATTTTGCATACTATAGAG+AGG - chr4_3:4923331-4923350 Msa0625710:five_prime_UTR 25.0%
TATTTGTAGCATCAATCTCA+AGG - chr4_3:4917725-4917744 Msa0625710:three_prime_UTR 30.0%
CAAAGTGTAGAATTGATTAG+AGG + chr4_3:4917763-4917782 None:intergenic 30.0%
ATCAATTCTACACTTTGCTT+TGG - chr4_3:4917766-4917785 Msa0625710:three_prime_UTR 30.0%
!!! AATGTTTTAGTGTTGAAGAC+TGG - chr4_3:4917958-4917977 Msa0625710:three_prime_UTR 30.0%
CTTACTACTATTACTTCGAT+AGG + chr4_3:4918316-4918335 None:intergenic 30.0%
GAAGAAAGCTTATAAAAAGG+GGG - chr4_3:4918398-4918417 Msa0625710:three_prime_UTR 30.0%
AAGAAAGCTTATAAAAAGGG+GGG - chr4_3:4918399-4918418 Msa0625710:three_prime_UTR 30.0%
! TTTAAGTCTTGTCTAGTGAA+GGG + chr4_3:4918522-4918541 None:intergenic 30.0%
! ACACACTAATTTCTAAAGAC+CGG - chr4_3:4918560-4918579 Msa0625710:CDS 30.0%
TCGCTTTATGAATTGATGTT+TGG - chr4_3:4918780-4918799 Msa0625710:intron 30.0%
CGCTTTATGAATTGATGTTT+GGG - chr4_3:4918781-4918800 Msa0625710:intron 30.0%
TTCTTCGTCTTAGGATTATT+GGG + chr4_3:4918960-4918979 None:intergenic 30.0%
CAAAAGATGAATGTTTATGG+TGG - chr4_3:4919077-4919096 Msa0625710:intron 30.0%
ACCTTGTATAGTTTCATACA+TGG - chr4_3:4919594-4919613 Msa0625710:intron 30.0%
ACCATGTATGAAACTATACA+AGG + chr4_3:4919598-4919617 None:intergenic 30.0%
AATGTAATCATTTACCAGGT+TGG - chr4_3:4919683-4919702 Msa0625710:intron 30.0%
ACATACATTCTAATGTTTGC+TGG - chr4_3:4919722-4919741 Msa0625710:intron 30.0%
CATAACTCAGAAACACTAAT+TGG - chr4_3:4919776-4919795 Msa0625710:intron 30.0%
!! TAAACTCTAAAGCAAAAGCT+TGG + chr4_3:4920141-4920160 None:intergenic 30.0%
AGGAAATGCAAATAAACAAG+AGG - chr4_3:4920400-4920419 Msa0625710:intron 30.0%
GTACACTAACAAATACCATA+AGG + chr4_3:4920773-4920792 None:intergenic 30.0%
AAATATCTCACTGCAAAACA+TGG + chr4_3:4921095-4921114 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG - chr4_3:4921473-4921492 Msa0625710:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG - chr4_3:4921474-4921493 Msa0625710:intron 30.0%
GTTGATATATATGAGACAGA+GGG + chr4_3:4921541-4921560 None:intergenic 30.0%
TGTTGATATATATGAGACAG+AGG + chr4_3:4921542-4921561 None:intergenic 30.0%
AAATAATGAGGAGTGAAAGT+TGG + chr4_3:4921929-4921948 None:intergenic 30.0%
AGATACGTTGCAAATTCTTA+AGG - chr4_3:4922103-4922122 Msa0625710:intron 30.0%
! TTTTCTTATCTCACACTTCT+CGG - chr4_3:4922315-4922334 Msa0625710:intron 30.0%
TTTGACACTAAATATACTGC+AGG - chr4_3:4922478-4922497 Msa0625710:intron 30.0%
AAGATGATGAATCATTCACA+AGG - chr4_3:4922701-4922720 Msa0625710:intron 30.0%
TATTAAACCCAAATACACAG+AGG + chr4_3:4923028-4923047 None:intergenic 30.0%
! TCTGTGTATTTGGGTTTAAT+AGG - chr4_3:4923027-4923046 Msa0625710:intron 30.0%
! CATATTCCTTCATTTTGTCT+CGG + chr4_3:4923176-4923195 None:intergenic 30.0%
GAAATCCAATAATAATTCCG+AGG - chr4_3:4923224-4923243 Msa0625710:CDS 30.0%
TGAAACCTCGGAATTATTAT+TGG + chr4_3:4923232-4923251 None:intergenic 30.0%
TGATTAGAGTATGGACAATG+AGG - chr4_3:4917815-4917834 Msa0625710:three_prime_UTR 35.0%
AAATCTGAGAGAACTGGAAA+TGG - chr4_3:4917906-4917925 Msa0625710:three_prime_UTR 35.0%
!! TATGTACCTTTTTGGCAAGA+GGG + chr4_3:4918040-4918059 None:intergenic 35.0%
!! ATATGTACCTTTTTGGCAAG+AGG + chr4_3:4918041-4918060 None:intergenic 35.0%
ATCAAATCACAGTATGTCAC+CGG + chr4_3:4918270-4918289 None:intergenic 35.0%
TAAAAGAGCCTTGGGATTAT+TGG - chr4_3:4918479-4918498 Msa0625710:CDS 35.0%
ATGACAAACCAATAATCCCA+AGG + chr4_3:4918490-4918509 None:intergenic 35.0%
! GTTTAAGTCTTGTCTAGTGA+AGG + chr4_3:4918523-4918542 None:intergenic 35.0%
AGTAATCATGTCAGCGAAAT+AGG + chr4_3:4918648-4918667 None:intergenic 35.0%
GATTACTAGAAGATGCATAG+AGG - chr4_3:4918661-4918680 Msa0625710:intron 35.0%
ATCAATTCATAAAGCGAGAG+CGG + chr4_3:4918777-4918796 None:intergenic 35.0%
! TGAATTGATGTTTGGGATGA+TGG - chr4_3:4918788-4918807 Msa0625710:intron 35.0%
!!! GGTTTAGGCTTGTTTTGTTT+AGG - chr4_3:4918917-4918936 Msa0625710:intron 35.0%
TCTTCGTCTTAGGATTATTG+GGG + chr4_3:4918959-4918978 None:intergenic 35.0%
CTTCTTCGTCTTAGGATTAT+TGG + chr4_3:4918961-4918980 None:intergenic 35.0%
ACTAACGTTCATTGTAGACA+TGG - chr4_3:4918988-4919007 Msa0625710:intron 35.0%
CTAACGTTCATTGTAGACAT+GGG - chr4_3:4918989-4919008 Msa0625710:intron 35.0%
TAACGTTCATTGTAGACATG+GGG - chr4_3:4918990-4919009 Msa0625710:intron 35.0%
! AGGAATGAATATATGGTGGA+AGG + chr4_3:4919356-4919375 None:intergenic 35.0%
TGTACTAAAACTTGATGTCG+CGG - chr4_3:4919534-4919553 Msa0625710:intron 35.0%
TTATCAACTGGTCACATTTC+TGG - chr4_3:4919839-4919858 Msa0625710:intron 35.0%
TGCAGCAAATGAAATCGTAA+CGG + chr4_3:4919882-4919901 None:intergenic 35.0%
ACTTGTGCAGCAATATACAA+AGG + chr4_3:4920028-4920047 None:intergenic 35.0%
! GTATATTGCTGCACAAGTTT+TGG - chr4_3:4920030-4920049 Msa0625710:intron 35.0%
! TGTGCTTCTTTTACTCTCAA+AGG - chr4_3:4920061-4920080 Msa0625710:intron 35.0%
! GTTTTTCATCCATTCATGAG+TGG - chr4_3:4920085-4920104 Msa0625710:intron 35.0%
!! AGTAATGATTGGTGCTGAAA+GGG + chr4_3:4920516-4920535 None:intergenic 35.0%
!! AAGTAATGATTGGTGCTGAA+AGG + chr4_3:4920517-4920536 None:intergenic 35.0%
ATCTTATGATTCAAGCCACT+AGG - chr4_3:4920542-4920561 Msa0625710:intron 35.0%
! AAGACATGCTTTTGTCCAAA+AGG - chr4_3:4920955-4920974 Msa0625710:CDS 35.0%
! TGATAATAGTTGAAGGCATG+TGG - chr4_3:4921125-4921144 Msa0625710:intron 35.0%
TGACAATTATAAAGGAACGG+AGG + chr4_3:4921234-4921253 None:intergenic 35.0%
CTACATGTTCATGTTCAGTA+AGG + chr4_3:4921507-4921526 None:intergenic 35.0%
TGAATGTCGATAATGACTTG+TGG - chr4_3:4921816-4921835 Msa0625710:intron 35.0%
TCAATTGAGTTATGTTCACG+AGG + chr4_3:4922082-4922101 None:intergenic 35.0%
ACAAGGCCTAAATGGAATAT+TGG + chr4_3:4922263-4922282 None:intergenic 35.0%
TAAGATCCTGTTAGGAAACA+AGG + chr4_3:4922280-4922299 None:intergenic 35.0%
GCAAACAATAAGATCCTGTT+AGG + chr4_3:4922288-4922307 None:intergenic 35.0%
ATGAATCCAGTAAGAACACT+AGG - chr4_3:4922519-4922538 Msa0625710:intron 35.0%
ATTGCTGCAAACAACTACAA+AGG - chr4_3:4922549-4922568 Msa0625710:intron 35.0%
! CAAACAACTACAAAGGCATA+TGG - chr4_3:4922556-4922575 Msa0625710:intron 35.0%
TCAGAGTTAAACTCTTCATC+AGG + chr4_3:4922648-4922667 None:intergenic 35.0%
TGATGAAGAGTTTAACTCTG+AGG - chr4_3:4922647-4922666 Msa0625710:intron 35.0%
GTATTTCCGAGACAAAATGA+AGG - chr4_3:4923167-4923186 Msa0625710:CDS 35.0%
AGACAGACACAAATATGACA+CGG - chr4_3:4923390-4923409 Msa0625710:five_prime_UTR 35.0%
! GATTTGAAGCCACCAAAAAG+AGG + chr4_3:4917891-4917910 None:intergenic 40.0%
! TAGTGTTGAAGACTGGACTT+TGG - chr4_3:4917965-4917984 Msa0625710:three_prime_UTR 40.0%
AGAGCAAGTGACTTTAGGTA+AGG + chr4_3:4918000-4918019 None:intergenic 40.0%
TGCTAGAAGTAAACTCTCAC+CGG + chr4_3:4918619-4918638 None:intergenic 40.0%
CTAGATTCACCGTCTTAACA+TGG + chr4_3:4918868-4918887 None:intergenic 40.0%
TGAGTAGACTTCTTCGTCTT+AGG + chr4_3:4918969-4918988 None:intergenic 40.0%
AACGTTCATTGTAGACATGG+GGG - chr4_3:4918991-4919010 Msa0625710:intron 40.0%
TCGAAGAAAAGCAGCAAAAG+AGG - chr4_3:4919190-4919209 Msa0625710:intron 40.0%
!!! CTTTTGGTTCACAATTGCAG+TGG + chr4_3:4919753-4919772 None:intergenic 40.0%
GAAACACTAATTGGATGTGC+TGG - chr4_3:4919785-4919804 Msa0625710:intron 40.0%
TTCTGGTGCTCATCTTAATC+CGG - chr4_3:4919856-4919875 Msa0625710:intron 40.0%
CTGCATTAAAACACTTCCCA+TGG - chr4_3:4919897-4919916 Msa0625710:intron 40.0%
TTTCATCCATTCATGAGTGG+CGG - chr4_3:4920088-4920107 Msa0625710:intron 40.0%
ACGGTTCCTTCAGTTGAATA+TGG - chr4_3:4920115-4920134 Msa0625710:intron 40.0%
TATACTCACAGCTCTTGTGT+CGG + chr4_3:4920206-4920225 None:intergenic 40.0%
TAGAACCAATCATGTGCTTG+AGG - chr4_3:4920336-4920355 Msa0625710:intron 40.0%
! ATTGAACAAAGCTAGCCTAG+TGG + chr4_3:4920560-4920579 None:intergenic 40.0%
!! TCTTCTTGGTCGACTCTTTT+TGG + chr4_3:4920939-4920958 None:intergenic 40.0%
! TGGACAAAAGCATGTCTTCT+TGG + chr4_3:4920953-4920972 None:intergenic 40.0%
!! TGACTCTCATCTTAGCCTTT+TGG + chr4_3:4920973-4920992 None:intergenic 40.0%
AAGGCTAAGATGAGAGTCAA+TGG - chr4_3:4920974-4920993 Msa0625710:CDS 40.0%
! CAGCTTTTGTCCTCACTAAA+TGG - chr4_3:4921011-4921030 Msa0625710:CDS 40.0%
! TAATAGTTGAAGGCATGTGG+TGG - chr4_3:4921128-4921147 Msa0625710:intron 40.0%
! AATAGTTGAAGGCATGTGGT+GGG - chr4_3:4921129-4921148 Msa0625710:intron 40.0%
TAACATGATGCAATGCAGGT+GGG - chr4_3:4921839-4921858 Msa0625710:intron 40.0%
ATGCTCAACATACTCATTGC+TGG - chr4_3:4921896-4921915 Msa0625710:intron 40.0%
TGCTCAACATACTCATTGCT+GGG - chr4_3:4921897-4921916 Msa0625710:intron 40.0%
GTTAGGAAACAAGGCCTAAA+TGG + chr4_3:4922271-4922290 None:intergenic 40.0%
!! TTTAGGCCTTGTTTCCTAAC+AGG - chr4_3:4922271-4922290 Msa0625710:intron 40.0%
! CTCACACTTCTCGGATATTT+TGG - chr4_3:4922324-4922343 Msa0625710:intron 40.0%
TAGTTGTTTGCAGCAATTGC+TGG + chr4_3:4922546-4922565 None:intergenic 40.0%
TATCTCATAGCCCCTATTCT+TGG - chr4_3:4922582-4922601 Msa0625710:intron 40.0%
TGTGCATATGTAGCTAGCTA+GGG + chr4_3:4922843-4922862 None:intergenic 40.0%
! GACATTAGTTCTCTAGCATG+TGG - chr4_3:4923002-4923021 Msa0625710:intron 40.0%
TTGATTAGAGGGTGAGAGAG+AGG + chr4_3:4917751-4917770 None:intergenic 45.0%
GGCTTCAAATCTGAGAGAAC+TGG - chr4_3:4917900-4917919 Msa0625710:three_prime_UTR 45.0%
! GAAGACTGGACTTTGGAAGA+TGG - chr4_3:4917972-4917991 Msa0625710:three_prime_UTR 45.0%
GGCAAAGAGCAAGTGACTTT+AGG + chr4_3:4918005-4918024 None:intergenic 45.0%
!! AGAAAGAGTATCGTTCCGCT+AGG - chr4_3:4918334-4918353 Msa0625710:three_prime_UTR 45.0%
!! GAAAGAGTATCGTTCCGCTA+GGG - chr4_3:4918335-4918354 Msa0625710:three_prime_UTR 45.0%
TTGAAGTCACAACTCCCTAG+CGG + chr4_3:4918352-4918371 None:intergenic 45.0%
ACTTTCATCGGAAAGGTGAG+GGG + chr4_3:4918596-4918615 None:intergenic 45.0%
GACTTTCATCGGAAAGGTGA+GGG + chr4_3:4918597-4918616 None:intergenic 45.0%
TCACCTTTCCGATGAAAGTC+CGG - chr4_3:4918597-4918616 Msa0625710:CDS 45.0%
AACTCTCACCGGACTTTCAT+CGG + chr4_3:4918608-4918627 None:intergenic 45.0%
TCATGTCAGCGAAATAGGCT+TGG + chr4_3:4918643-4918662 None:intergenic 45.0%
TCAAACTGTGGAAGCGAAAG+CGG + chr4_3:4918834-4918853 None:intergenic 45.0%
GCAAAGCAGTAAAGCTGCAA+CGG - chr4_3:4919155-4919174 Msa0625710:intron 45.0%
AAAGCTGCAACGGAGTAACT+TGG - chr4_3:4919165-4919184 Msa0625710:intron 45.0%
AAGCTGCAACGGAGTAACTT+GGG - chr4_3:4919166-4919185 Msa0625710:intron 45.0%
AAAGCAGCAAAAGAGGCTTC+TGG - chr4_3:4919197-4919216 Msa0625710:intron 45.0%
AAGCAGCAAAAGAGGCTTCT+GGG - chr4_3:4919198-4919217 Msa0625710:intron 45.0%
TCTCTACCAAGTCAGAAGCT+TGG + chr4_3:4919261-4919280 None:intergenic 45.0%
!! ATATATGGTGGAAGGTGCCT+TGG + chr4_3:4919348-4919367 None:intergenic 45.0%
CGCGGTTCAAATAGTAGTTG+TGG - chr4_3:4919552-4919571 Msa0625710:intron 45.0%
CTATAAACTCAGCTCCAACC+TGG + chr4_3:4919700-4919719 None:intergenic 45.0%
! CAGGTTGGAGCTGAGTTTAT+AGG - chr4_3:4919698-4919717 Msa0625710:intron 45.0%
GCAAATGAAATCGTAACGGC+CGG + chr4_3:4919878-4919897 None:intergenic 45.0%
GCTTGGCCATATTCAACTGA+AGG + chr4_3:4920124-4920143 None:intergenic 45.0%
!! CATGTTTGTTGTCACTGCAG+TGG - chr4_3:4920177-4920196 Msa0625710:intron 45.0%
CCAATCCTCAAGCACATGAT+TGG + chr4_3:4920344-4920363 None:intergenic 45.0%
CCAATCATGTGCTTGAGGAT+TGG - chr4_3:4920341-4920360 Msa0625710:intron 45.0%
GTGGTAACATGATGCAATGC+AGG - chr4_3:4921835-4921854 Msa0625710:intron 45.0%
GTAACATGATGCAATGCAGG+TGG - chr4_3:4921838-4921857 Msa0625710:intron 45.0%
GAGTATGTTGAGCATGACAG+TGG + chr4_3:4921891-4921910 None:intergenic 45.0%
!! TCGGAGGTTTCTGGTTTGTT+CGG + chr4_3:4922424-4922443 None:intergenic 45.0%
! CTTTTCCACTCCACACTTCT+CGG + chr4_3:4922443-4922462 None:intergenic 45.0%
TTCATTGAAGCTCCAGTTGC+AGG + chr4_3:4922504-4922523 None:intergenic 45.0%
!! ACCAAGAGCACCAAGAATAG+GGG + chr4_3:4922595-4922614 None:intergenic 45.0%
!! CACCAAGAGCACCAAGAATA+GGG + chr4_3:4922596-4922615 None:intergenic 45.0%
!! CTATTCTTGGTGCTCTTGGT+GGG - chr4_3:4922595-4922614 Msa0625710:intron 45.0%
!! TATTCTTGGTGCTCTTGGTG+GGG - chr4_3:4922596-4922615 Msa0625710:intron 45.0%
GTGTGCATATGTAGCTAGCT+AGG + chr4_3:4922844-4922863 None:intergenic 45.0%
CATGTGGCCTCTGTGTATTT+GGG - chr4_3:4923018-4923037 Msa0625710:intron 45.0%
!! CAGGGGTAGAAGGTACTGAT+GGG + chr4_3:4917845-4917864 None:intergenic 50.0%
! ACTCCTGGTGCTCCTCTTTT+TGG - chr4_3:4917876-4917895 Msa0625710:three_prime_UTR 50.0%
! TTTTGGCAAGAGGGACAGGA+GGG + chr4_3:4918031-4918050 None:intergenic 50.0%
!! TTTTTGGCAAGAGGGACAGG+AGG + chr4_3:4918032-4918051 None:intergenic 50.0%
TCCTGTCCCTCTTGCCAAAA+AGG - chr4_3:4918031-4918050 Msa0625710:three_prime_UTR 50.0%
!! ACCTTTTTGGCAAGAGGGAC+AGG + chr4_3:4918035-4918054 None:intergenic 50.0%
AGAGCCAAACCACAAGTGCA+CGG - chr4_3:4918290-4918309 Msa0625710:three_prime_UTR 50.0%
GGACTTTCATCGGAAAGGTG+AGG + chr4_3:4918598-4918617 None:intergenic 50.0%
TCACCGGACTTTCATCGGAA+AGG + chr4_3:4918603-4918622 None:intergenic 50.0%
AGCAGCAAAAGAGGCTTCTG+GGG - chr4_3:4919199-4919218 Msa0625710:intron 50.0%
ACCAAGTCAGAAGCTTGGCA+CGG + chr4_3:4919256-4919275 None:intergenic 50.0%
TGGAGCGAAAGAAAGAGGAC+TGG + chr4_3:4919328-4919347 None:intergenic 50.0%
GTCCTCTTTCTTTCGCTCCA+AGG - chr4_3:4919328-4919347 Msa0625710:intron 50.0%
TGCCTTGGAGCGAAAGAAAG+AGG + chr4_3:4919333-4919352 None:intergenic 50.0%
ATTGGATGTGCTGGAGCTAC+TGG - chr4_3:4919794-4919813 Msa0625710:intron 50.0%
! ATTCATGAGTGGCGGTGTCA+CGG - chr4_3:4920096-4920115 Msa0625710:intron 50.0%
! TGAAGGCATGTGGTGGGATT+TGG - chr4_3:4921135-4921154 Msa0625710:intron 50.0%
AATGCAGGTGGGAGAACTTG+CGG - chr4_3:4921850-4921869 Msa0625710:intron 50.0%
ATATACTGCAGGCCTGCAAC+TGG - chr4_3:4922489-4922508 Msa0625710:intron 50.0%
GCTGGTCCTAGTGTTCTTAC+TGG + chr4_3:4922528-4922547 None:intergenic 50.0%
!! CCACCAAGAGCACCAAGAAT+AGG + chr4_3:4922597-4922616 None:intergenic 50.0%
!! CCTATTCTTGGTGCTCTTGG+TGG - chr4_3:4922594-4922613 Msa0625710:intron 50.0%
GCATGTGGCCTCTGTGTATT+TGG - chr4_3:4923017-4923036 Msa0625710:intron 50.0%
!! GCAGGGGTAGAAGGTACTGA+TGG + chr4_3:4917846-4917865 None:intergenic 55.0%
!! CCACCAAAAAGAGGAGCACC+AGG + chr4_3:4917882-4917901 None:intergenic 55.0%
! CCTGGTGCTCCTCTTTTTGG+TGG - chr4_3:4917879-4917898 Msa0625710:three_prime_UTR 55.0%
TTTGGCAAGAGGGACAGGAG+GGG + chr4_3:4918030-4918049 None:intergenic 55.0%
TAGGCCGTGCACTTGTGGTT+TGG + chr4_3:4918297-4918316 None:intergenic 55.0%
TTCGATAGGCCGTGCACTTG+TGG + chr4_3:4918302-4918321 None:intergenic 55.0%
TCGGAAAGGTGAGGGGCTAA+GGG + chr4_3:4918589-4918608 None:intergenic 55.0%
ATCGGAAAGGTGAGGGGCTA+AGG + chr4_3:4918590-4918609 None:intergenic 55.0%
CGAGAGCGGAGTCTTGATGT+TGG + chr4_3:4918763-4918782 None:intergenic 55.0%
ACTGTGGAAGCGAAAGCGGA+GGG + chr4_3:4918830-4918849 None:intergenic 55.0%
AACTGTGGAAGCGAAAGCGG+AGG + chr4_3:4918831-4918850 None:intergenic 55.0%
GCAGCAAAAGAGGCTTCTGG+GGG - chr4_3:4919200-4919219 Msa0625710:intron 55.0%
GTGACACCGCCACTCATGAA+TGG + chr4_3:4920097-4920116 None:intergenic 55.0%
ACTCACAGCTCTTGTGTCGG+TGG + chr4_3:4920203-4920222 None:intergenic 55.0%
ATGCAGGTGGGAGAACTTGC+GGG - chr4_3:4921851-4921870 Msa0625710:intron 55.0%
CCACACTTCTCGGAGGTTTC+TGG + chr4_3:4922433-4922452 None:intergenic 55.0%
CCAGAAACCTCCGAGAAGTG+TGG - chr4_3:4922430-4922449 Msa0625710:intron 55.0%
! AACCTCCGAGAAGTGTGGAG+TGG - chr4_3:4922435-4922454 Msa0625710:intron 55.0%
TTCCACTCCACACTTCTCGG+AGG + chr4_3:4922440-4922459 None:intergenic 55.0%
!! GCCCCTATTCTTGGTGCTCT+TGG - chr4_3:4922591-4922610 Msa0625710:intron 55.0%
GTTAAAGCCTCTTCTGCCCC+TGG - chr4_3:4922669-4922688 Msa0625710:intron 55.0%
!! AGGAGTACCTGGGGTAGCAG+GGG + chr4_3:4917862-4917881 None:intergenic 60.0%
!! CAGGAGTACCTGGGGTAGCA+GGG + chr4_3:4917863-4917882 None:intergenic 60.0%
!! AGGAGCACCAGGAGTACCTG+GGG + chr4_3:4917871-4917890 None:intergenic 60.0%
!! GAGGAGCACCAGGAGTACCT+GGG + chr4_3:4917872-4917891 None:intergenic 60.0%
!! AGAGGAGCACCAGGAGTACC+TGG + chr4_3:4917873-4917892 None:intergenic 60.0%
TTGGCAAGAGGGACAGGAGG+GGG + chr4_3:4918029-4918048 None:intergenic 60.0%
GGTGAGGGGCTAAGGGAAAC+CGG + chr4_3:4918582-4918601 None:intergenic 60.0%
! GCAAAAGAGGCTTCTGGGGG+TGG - chr4_3:4919203-4919222 Msa0625710:intron 60.0%
GCCGTGCCAAGCTTCTGACT+TGG - chr4_3:4919252-4919271 Msa0625710:CDS 60.0%
GGGAGAACTTGCGGGAATCG+CGG - chr4_3:4921859-4921878 Msa0625710:intron 60.0%
AGAACTTGCGGGAATCGCGG+TGG - chr4_3:4921862-4921881 Msa0625710:intron 60.0%
GAACTTGCGGGAATCGCGGT+GGG - chr4_3:4921863-4921882 Msa0625710:intron 60.0%
CCTGGGGTAGCAGGGGTAGA+AGG + chr4_3:4917855-4917874 None:intergenic 65.0%
CCTTCTACCCCTGCTACCCC+AGG - chr4_3:4917852-4917871 Msa0625710:three_prime_UTR 65.0%
!! CCAGGAGTACCTGGGGTAGC+AGG + chr4_3:4917864-4917883 None:intergenic 65.0%
CCTGCTACCCCAGGTACTCC+TGG - chr4_3:4917861-4917880 Msa0625710:three_prime_UTR 65.0%
! AGAGGCTTCTGGGGGTGGCA+CGG - chr4_3:4919208-4919227 Msa0625710:intron 65.0%
GGCCGTGCCACATGTTGGCA+CGG - chr4_3:4919229-4919248 Msa0625710:intron 65.0%
GCCGTGCCACATGTTGGCAC+GGG - chr4_3:4919230-4919249 Msa0625710:intron 65.0%
GCCCGTGCCAACATGTGGCA+CGG + chr4_3:4919234-4919253 None:intergenic 65.0%
!! CTTGGTGCTCTTGGTGGGGC+AGG - chr4_3:4922600-4922619 Msa0625710:intron 65.0%
GCAAGAGGGACAGGAGGGGG+AGG + chr4_3:4918026-4918045 None:intergenic 70.0%
GGCACGGCCGTGCCACATGT+TGG - chr4_3:4919224-4919243 Msa0625710:intron 70.0%
GCACGGCCCGTGCCAACATG+TGG + chr4_3:4919239-4919258 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4917695 4923455 4917695 ID=Msa0625710;Name=Msa0625710
chr4_3 mRNA 4917695 4923455 4917695 ID=Msa0625710-mRNA-1;Parent=Msa0625710;Name=Msa0625710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=130|1|1|1|1|1|5|748|305
chr4_3 exon 4917695 4918650 4917695 ID=Msa0625710-mRNA-1:exon:1378;Parent=Msa0625710-mRNA-1
chr4_3 exon 4919232 4919293 4919232 ID=Msa0625710-mRNA-1:exon:1377;Parent=Msa0625710-mRNA-1
chr4_3 exon 4920934 4921128 4920934 ID=Msa0625710-mRNA-1:exon:1376;Parent=Msa0625710-mRNA-1
chr4_3 exon 4921225 4921449 4921225 ID=Msa0625710-mRNA-1:exon:1375;Parent=Msa0625710-mRNA-1
chr4_3 exon 4923098 4923455 4923098 ID=Msa0625710-mRNA-1:exon:1374;Parent=Msa0625710-mRNA-1
chr4_3 five_prime_UTR 4923326 4923455 4923326 ID=Msa0625710-mRNA-1:five_prime_utr;Parent=Msa0625710-mRNA-1
chr4_3 CDS 4923098 4923325 4923098 ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3 CDS 4921225 4921449 4921225 ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3 CDS 4920934 4921128 4920934 ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3 CDS 4919232 4919293 4919232 ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3 CDS 4918443 4918650 4918443 ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3 three_prime_UTR 4917695 4918442 4917695 ID=Msa0625710-mRNA-1:three_prime_utr;Parent=Msa0625710-mRNA-1
Gene Sequence

>Msa0625710

ATGGACAATGAGGAAATCCCATCAGTACCTTCTACCCCTGCTACCCCAGGTACTCCTGGTGCTCCTCTTTTTGGTGGCTTCAAATCTGAGAGAACTGGAAATGGTAGAAAGAACTCACTCCTCAAGAATTTAAAATGTTTTAGTGTTGAAGACTGGACTTTGGAAGATGGAGCCTTACCTAAAGTCACTTGCTCTTTGCCTCCCCCTCCTGTCCCTCTTGCCAAAAAGGTTGGAGCTGAGTTTATAGGCACATACATTCTAATGTTTGCTGGAATAGCCACTGCAATTGTGAACCAAAAGATACATAACTCAGAAACACTAATTGGATGTGCTGGAGCTACTGGACTTGCTGTTATGATCATAATTTTATCAACTGGTCACATTTCTGGTGCTCATCTTAATCCGGCCGTTACGATTTCATTTGCTGCATTAAAACACTTCCCATGGAAAAATGTACCTTTGTATATTGCTGCACAAGTTTTGGCATCAATATGTGCTTCTTTTACTCTCAAAGGAGTTTTTCATCCATTCATGAGTGGCGGTGTCACGGTTCCTTCAGTTGAATATGGCCAAGCTTTTGCTTTAGAGTTTATTATCAGTTTTAATCTCATGTTTGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAACTTGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAACATACTCATTGCTGGGCCTGCAACTGGAGCTTCAATGAATCCAGTAAGAACACTAGGACCAGCAATTGCTGCAAACAACTACAAAGGCATATGGCTATATCTCATAGCCCCTATTCTTGGTGCTCTTGGTGGGGCAGGAGCTTACACTGCTGTCAAGCTTCCTGATGAAGAGTTTAACTCTGAGGTTAAAGCCTCTTCTGCCCCTGGAAGTTTCAGAAGATGA
Protein sequence

>Msa0625710

MDNEEIPSVPSTPATPGTPGAPLFGGFKSERTGNGRKNSLLKNLKCFSVEDWTLEDGALPKVTCSLPPPPVPLAKKVGAEFIGTYILMFAGIATAIVNQKIHNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYIAAQVLASICASFTLKGVFHPFMSGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGASMNPVRTLGPAIAANNYKGIWLYLIAPILGALGGAGAYTAVKLPDEEFNSEVKASSAPGSFRR*