AlfalfaGEDB | Msa0625710

M. sativa cultivar zhongmu-4 / Msa0625710

KEGG: K09874
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618
PFAM: PF00230.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625710	XP_003604218.1	99.672	305	1	0	1	305	1	305	0.0	611

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625710	sp\|Q9SAI4\|NIP61_ARATH	76.129	310	64	5	1	305	1	305	4.18e-160	451

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625710	Q6QIL3	99.672	305	1	0	1	305	1	305	0.0	611

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0259670	Msa0625710	0.817063	4.005297e-52	-8.615850e-47
Msa0305550	Msa0625710	0.803862	2.846735e-49	-8.615850e-47
Msa0341490	Msa0625710	0.810824	9.510478e-51	-8.615850e-47
Msa0529880	Msa0625710	0.857136	2.004495e-62	-8.615850e-47
Msa0585550	Msa0625710	0.974434	3.776394e-138	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625710	MtrunA17_Chr4g0001221	99.672	305	1	0	1	305	1	305	0.0	611
Msa0625710	MtrunA17_Chr2g0333771	83.226	310	44	3	1	305	4	310	2.93e-176	489
Msa0625710	MtrunA17_Chr4g0001111	98.636	220	3	0	1	220	1	220	1.77e-158	441
Msa0625710	MtrunA17_Chr1g0201331	59.028	288	103	2	7	288	9	287	1.40e-112	327
Msa0625710	MtrunA17_Chr4g0001161	92.857	140	10	0	88	227	1	140	2.01e-88	260
Msa0625710	MtrunA17_Chr8g0379901	53.680	231	102	2	71	298	35	263	5.47e-78	238
Msa0625710	MtrunA17_Chr8g0379911	53.744	227	100	2	75	298	38	262	6.07e-77	236
Msa0625710	MtrunA17_Chr2g0284631	55.349	215	95	1	71	284	87	301	2.00e-73	229
Msa0625710	MtrunA17_Chr7g0217331	46.311	244	129	1	61	304	23	264	2.96e-73	226
Msa0625710	MtrunA17_Chr2g0284591	48.594	249	121	2	54	298	15	260	6.13e-72	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625710	AT1G80760.1	76.129	310	64	5	1	305	1	305	4.25e-161	451
Msa0625710	AT4G10380.1	69.200	250	67	3	43	288	48	291	4.72e-116	337
Msa0625710	AT4G19030.1	46.643	283	140	4	33	304	10	292	5.47e-76	234
Msa0625710	AT5G37820.1	47.967	246	124	3	55	298	24	267	7.12e-72	223
Msa0625710	AT5G37820.2	44.565	276	144	5	27	298	33	303	1.09e-71	224
Msa0625710	AT4G18910.1	44.178	292	143	5	29	304	2	289	1.73e-71	223
Msa0625710	AT5G37810.1	47.347	245	125	3	56	298	25	267	2.50e-69	217
Msa0625710	AT1G31885.1	45.161	248	128	2	65	304	33	280	1.15e-65	209
Msa0625710	AT1G31885.2	46.018	226	114	2	87	304	1	226	2.68e-60	193
Msa0625710	AT2G34390.1	40.942	276	144	6	43	305	13	282	2.55e-55	181

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Find 97 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTAGAATTGATTAGA+GGG	0.534927	4_3:+4923369	None:intergenic
AAATCTGAGAGAACTGGAAA+TGG	0.466281	4_3:-4923222	Msa0625710:CDS
AACACAAAATTATATTCTCA+TGG	0.549209	4_3:+4918060	None:intergenic
AAGATGATGAATCATTCACA+AGG	0.712240	4_3:-4918427	Msa0625710:exon
AATGCAGGTGGGAGAACTTG+CGG	0.593498	4_3:-4919278	Msa0625710:intron
ACATACATTCTAATGTTTGC+TGG	0.431868	4_3:-4921406	Msa0625710:CDS
ACCAAGAGCACCAAGAATAG+GGG	0.596229	4_3:+4918536	None:intergenic
ACGGTTCCTTCAGTTGAATA+TGG	0.365783	4_3:-4921013	Msa0625710:CDS
ACTCACAGCTCTTGTGTCGG+TGG	0.621849	4_3:+4920928	None:intergenic
ACTTGTGCAGCAATATACAA+AGG	0.678381	4_3:+4921103	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTTGTAGCATCAATCTCA+AGG	-	chr4_3:4917725-4917744	Msa0625710:three_prime_UTR	30.0%
CAAAGTGTAGAATTGATTAG+AGG	+	chr4_3:4917763-4917782	None:intergenic	30.0%
ATCAATTCTACACTTTGCTT+TGG	-	chr4_3:4917766-4917785	Msa0625710:three_prime_UTR	30.0%
CTTACTACTATTACTTCGAT+AGG	+	chr4_3:4918316-4918335	None:intergenic	30.0%
GAAGAAAGCTTATAAAAAGG+GGG	-	chr4_3:4918398-4918417	Msa0625710:three_prime_UTR	30.0%
AAGAAAGCTTATAAAAAGGG+GGG	-	chr4_3:4918399-4918418	Msa0625710:three_prime_UTR	30.0%
TCGCTTTATGAATTGATGTT+TGG	-	chr4_3:4918780-4918799	Msa0625710:intron	30.0%
CGCTTTATGAATTGATGTTT+GGG	-	chr4_3:4918781-4918800	Msa0625710:intron	30.0%
TTCTTCGTCTTAGGATTATT+GGG	+	chr4_3:4918960-4918979	None:intergenic	30.0%
CAAAAGATGAATGTTTATGG+TGG	-	chr4_3:4919077-4919096	Msa0625710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	4917695	4923455	4917695	ID=Msa0625710;Name=Msa0625710
chr4_3	mRNA	4917695	4923455	4917695	ID=Msa0625710-mRNA-1;Parent=Msa0625710;Name=Msa0625710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=130\|1\|1\|1\|1\|1\|5\|748\|305
chr4_3	exon	4917695	4918650	4917695	ID=Msa0625710-mRNA-1:exon:1378;Parent=Msa0625710-mRNA-1
chr4_3	exon	4919232	4919293	4919232	ID=Msa0625710-mRNA-1:exon:1377;Parent=Msa0625710-mRNA-1
chr4_3	exon	4920934	4921128	4920934	ID=Msa0625710-mRNA-1:exon:1376;Parent=Msa0625710-mRNA-1
chr4_3	exon	4921225	4921449	4921225	ID=Msa0625710-mRNA-1:exon:1375;Parent=Msa0625710-mRNA-1
chr4_3	exon	4923098	4923455	4923098	ID=Msa0625710-mRNA-1:exon:1374;Parent=Msa0625710-mRNA-1
chr4_3	five_prime_UTR	4923326	4923455	4923326	ID=Msa0625710-mRNA-1:five_prime_utr;Parent=Msa0625710-mRNA-1
chr4_3	CDS	4923098	4923325	4923098	ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3	CDS	4921225	4921449	4921225	ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3	CDS	4920934	4921128	4920934	ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3	CDS	4919232	4919293	4919232	ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3	CDS	4918443	4918650	4918443	ID=Msa0625710-mRNA-1:cds;Parent=Msa0625710-mRNA-1
chr4_3	three_prime_UTR	4917695	4918442	4917695	ID=Msa0625710-mRNA-1:three_prime_utr;Parent=Msa0625710-mRNA-1

Gene Sequence

>Msa0625710

ATGGACAATGAGGAAATCCCATCAGTACCTTCTACCCCTGCTACCCCAGGTACTCCTGGTGCTCCTCTTTTTGGTGGCTTCAAATCTGAGAGAACTGGAAATGGTAGAAAGAACTCACTCCTCAAGAATTTAAAATGTTTTAGTGTTGAAGACTGGACTTTGGAAGATGGAGCCTTACCTAAAGTCACTTGCTCTTTGCCTCCCCCTCCTGTCCCTCTTGCCAAAAAGGTTGGAGCTGAGTTTATAGGCACATACATTCTAATGTTTGCTGGAATAGCCACTGCAATTGTGAACCAAAAGATACATAACTCAGAAACACTAATTGGATGTGCTGGAGCTACTGGACTTGCTGTTATGATCATAATTTTATCAACTGGTCACATTTCTGGTGCTCATCTTAATCCGGCCGTTACGATTTCATTTGCTGCATTAAAACACTTCCCATGGAAAAATGTACCTTTGTATATTGCTGCACAAGTTTTGGCATCAATATGTGCTTCTTTTACTCTCAAAGGAGTTTTTCATCCATTCATGAGTGGCGGTGTCACGGTTCCTTCAGTTGAATATGGCCAAGCTTTTGCTTTAGAGTTTATTATCAGTTTTAATCTCATGTTTGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAACTTGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAACATACTCATTGCTGGGCCTGCAACTGGAGCTTCAATGAATCCAGTAAGAACACTAGGACCAGCAATTGCTGCAAACAACTACAAAGGCATATGGCTATATCTCATAGCCCCTATTCTTGGTGCTCTTGGTGGGGCAGGAGCTTACACTGCTGTCAAGCTTCCTGATGAAGAGTTTAACTCTGAGGTTAAAGCCTCTTCTGCCCCTGGAAGTTTCAGAAGATGA

Protein sequence

>Msa0625710

MDNEEIPSVPSTPATPGTPGAPLFGGFKSERTGNGRKNSLLKNLKCFSVEDWTLEDGALPKVTCSLPPPPVPLAKKVGAEFIGTYILMFAGIATAIVNQKIHNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYIAAQVLASICASFTLKGVFHPFMSGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGASMNPVRTLGPAIAANNYKGIWLYLIAPILGALGGAGAYTAVKLPDEEFNSEVKASSAPGSFRR*