AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0492890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492890 MtrunA17_Chr3g0085831 96.450 169 6 0 1 169 1 169 2.31e-122 341
Msa0492890 MtrunA17_Chr7g0256851 50.476 105 48 3 1 104 1 102 3.24e-29 103
Msa0492890 MtrunA17_Chr5g0437861 32.749 171 73 4 1 169 4 134 1.25e-20 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492890 AT2G41430.5 40.000 175 87 6 1 169 1 163 1.03e-26 99.4
Msa0492890 AT2G41430.4 40.000 175 87 6 1 169 1 163 1.03e-26 99.4
Msa0492890 AT2G41430.2 40.000 175 87 6 1 169 1 163 1.03e-26 99.4
Msa0492890 AT2G41430.1 40.000 175 87 6 1 169 1 163 1.03e-26 99.4
Msa0492890 AT4G14270.1 35.227 176 71 7 2 169 3 143 4.80e-25 94.4
Msa0492890 AT4G14270.2 35.227 176 71 7 2 169 3 143 4.80e-25 94.4
Msa0492890 AT2G41430.3 52.500 80 35 2 1 77 1 80 6.51e-24 90.9

Find 54 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAATCTTGGAATGTTTA+TGG 0.107441 3_4:+17095468 Msa0492890:three_prime_UTR
TGTGCTGAAGTTATTGTATT+TGG 0.233878 3_4:+17093956 Msa0492890:five_prime_UTR
CGACATGGTTTCATAACTAT+TGG 0.282742 3_4:+17094110 Msa0492890:CDS
GGGTGGATAAACTTATAAAA+TGG 0.317843 3_4:-17095725 None:intergenic
AAATACACTCTTGTAGTAAT+AGG 0.336266 3_4:+17092570 Msa0492890:five_prime_UTR
GTCCTGTTCAGTGTGGTAAT+TGG 0.336286 3_4:+17095586 Msa0492890:three_prime_UTR
GACTTGACACCCCTTTCCTT+TGG 0.352346 3_4:-17095175 None:intergenic
GCTGGCTTCTCAAAGTGCTT+TGG 0.365521 3_4:-17095211 None:intergenic
AGTTTGAACGGCTCAAATCT+TGG 0.379568 3_4:+17095457 Msa0492890:three_prime_UTR
ATTTCTCAAACTCATTATCT+AGG 0.388062 3_4:-17094255 None:intergenic
TGAGTTGAAACAAAGCAAAA+TGG 0.401226 3_4:-17092493 None:intergenic
ATTCAATGCTTACCATGAAC+AGG 0.405358 3_4:-17094340 None:intergenic
GTTGTGATGGCATTGGTAAC+TGG 0.417835 3_4:+17093986 Msa0492890:exon
GGTATGAAGAGAGGTGCATT+TGG 0.424438 3_4:-17094028 None:intergenic
TCAACAGGATCATCCATAAC+TGG 0.427432 3_4:-17094307 None:intergenic
CATGTAGTGTATTTAATGGT+AGG 0.436501 3_4:+17095423 Msa0492890:three_prime_UTR
AGCTCAAGAGTGTCCAGTTA+TGG 0.442394 3_4:+17094294 Msa0492890:CDS
CGAGGTTGGTGAATTCTTTG+AGG 0.442641 3_4:-17095259 None:intergenic
GATCTTGTCACCAAAGGAAA+GGG 0.460246 3_4:+17095165 Msa0492890:CDS
ATCCAATTACCACACTGAAC+AGG 0.468231 3_4:-17095588 None:intergenic
TAACTTGTGTATAGAGAAGA+AGG 0.484111 3_4:+17095365 Msa0492890:three_prime_UTR
AACGTTTCTCTTAACGAGGT+TGG 0.487248 3_4:-17095273 None:intergenic
AGGGGTGTCAAGTCCCCTAT+CGG 0.514898 3_4:+17095184 Msa0492890:CDS
CTATTGGTTGAGCCAGCATA+AGG 0.515423 3_4:+17094126 Msa0492890:CDS
TTCTTTGAGGTGCACACTTG+AGG 0.519384 3_4:-17095246 None:intergenic
CAAAATCTTCCTCCTTATGC+TGG 0.523223 3_4:-17094138 None:intergenic
TTGAGGTTAACATGTTGTGC+TGG 0.529132 3_4:-17095229 None:intergenic
ACCTGCTGCATTTCGTCAAG+TGG 0.534431 3_4:+17094048 Msa0492890:CDS
TTCACAAGCTCCCACCATTG+AGG 0.540449 3_4:-17094082 None:intergenic
GGGGTGTCAAGTCCCCTATC+GGG 0.544218 3_4:+17095185 Msa0492890:CDS
AAGTGCTTTGGAGACCCGAT+AGG 0.549595 3_4:-17095199 None:intergenic
TGGACACTCTTGAGCTTCGT+CGG 0.549850 3_4:-17094287 None:intergenic
TCCACTTGACGAAATGCAGC+AGG 0.554768 3_4:-17094049 None:intergenic
AGATCTTGTCACCAAAGGAA+AGG 0.559083 3_4:+17095164 Msa0492890:CDS
AGTGCTTTGGAGACCCGATA+GGG 0.559193 3_4:-17095198 None:intergenic
ATCTTAATCAGGTGTTAACA+AGG 0.566714 3_4:+17095123 Msa0492890:intron
GTGAGACTTTCAAGTTTGAA+CGG 0.569472 3_4:+17095445 Msa0492890:three_prime_UTR
TCTCAAGATCTTGTCACCAA+AGG 0.579452 3_4:+17095159 Msa0492890:CDS
TGCTGCATTTCGTCAAGTGG+AGG 0.583030 3_4:+17094051 Msa0492890:CDS
AATGGTTAATGTAAGTTACA+TGG 0.588591 3_4:+17095529 Msa0492890:three_prime_UTR
TTAAACATGGAACCATGTGA+TGG 0.588720 3_4:+17095700 Msa0492890:three_prime_UTR
AGCTTGTGAAATCTTCGACA+TGG 0.599712 3_4:+17094095 Msa0492890:CDS
ATGACAACTTTATTTAAACA+TGG 0.605146 3_4:+17095687 Msa0492890:three_prime_UTR
ATTTGGCTGACAAGTTGTGA+TGG 0.617155 3_4:+17093973 Msa0492890:exon
AGTTATGGATGATCCTGTTG+AGG 0.618736 3_4:+17094309 Msa0492890:CDS
CTGACAAGTTGTGATGGCAT+TGG 0.626958 3_4:+17093979 Msa0492890:exon
TGTGTATAGAGAAGAAGGTG+TGG 0.633118 3_4:+17095370 Msa0492890:three_prime_UTR
TTGGTTGAGCCAGCATAAGG+AGG 0.633628 3_4:+17094129 Msa0492890:CDS
GTGCTTTGGAGACCCGATAG+GGG 0.634460 3_4:-17095197 None:intergenic
ATCTTGTCACCAAAGGAAAG+GGG 0.652126 3_4:+17095166 Msa0492890:CDS
TATAAAATGGAACCATCACA+TGG 0.659435 3_4:-17095712 None:intergenic
ATTCAACGTTTCTCTTAACG+AGG 0.660964 3_4:-17095277 None:intergenic
AATGCAGCAGGTATGAAGAG+AGG 0.675950 3_4:-17094037 None:intergenic
TAGGTGTGTCCTGTTCAGTG+TGG 0.680803 3_4:+17095579 Msa0492890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACAATTTTTTTTCTTCAA+AGG - chr3_4:17092789-17092808 None:intergenic 15.0%
!!! TGGATTGTATTTTTAAAAAA+AGG + chr3_4:17093059-17093078 Msa0492890:intron 15.0%
!!! GGATTGTATTTTTAAAAAAA+GGG + chr3_4:17093060-17093079 Msa0492890:intron 15.0%
!! TTAGTATATATAGTAAATCT+TGG + chr3_4:17093094-17093113 Msa0492890:intron 15.0%
!!! ATATAAAAACAAGAGTTTTA+TGG + chr3_4:17093478-17093497 Msa0492890:intron 15.0%
!!! AATACTTTTTCAAACTAAAT+AGG + chr3_4:17094622-17094641 Msa0492890:intron 15.0%
!! TAGTTTAAAAATCATACAAA+GGG + chr3_4:17094793-17094812 Msa0492890:intron 15.0%
!!! TTCATTTTGAAATAAATGAA+TGG + chr3_4:17095511-17095530 Msa0492890:three_prime_UTR 15.0%
!!! ATCATGTTATGTTTTTTGTT+TGG + chr3_4:17092608-17092627 Msa0492890:intron 20.0%
!! AGCATCATAAAAAATATCAA+TGG - chr3_4:17092822-17092841 None:intergenic 20.0%
!!! ATTGATTTTTTTTTCTCACT+AGG + chr3_4:17093004-17093023 Msa0492890:intron 20.0%
!! TATATATAGTAAATCTTGGA+TGG + chr3_4:17093098-17093117 Msa0492890:intron 20.0%
!! AGAGTAAAAAGACAAATAAA+TGG - chr3_4:17093426-17093445 None:intergenic 20.0%
!! TACTCTTTACTAAAACTTTA+AGG + chr3_4:17093440-17093459 Msa0492890:intron 20.0%
!! GACGTTTATTATGATATTTA+AGG - chr3_4:17093561-17093580 None:intergenic 20.0%
!! TATTTAACAATACCATTCAA+AGG - chr3_4:17093732-17093751 None:intergenic 20.0%
!!! AAGCATTGAATCTAATTTAT+TGG + chr3_4:17094352-17094371 Msa0492890:intron 20.0%
!! CTAGTTTAAAAATCATACAA+AGG + chr3_4:17094792-17094811 Msa0492890:intron 20.0%
!!! TTACATATTTTGTGATTAGT+AGG - chr3_4:17095084-17095103 None:intergenic 20.0%
!!! AATTGATTTCTATCTTAATC+AGG + chr3_4:17095112-17095131 Msa0492890:intron 20.0%
!!! TTTTCATGTAGTGTATTTAA+TGG + chr3_4:17095419-17095438 Msa0492890:three_prime_UTR 20.0%
!!! AGTCTTTGAATTTATGTTTT+AGG + chr3_4:17095560-17095579 Msa0492890:three_prime_UTR 20.0%
!!! TTTTCCATTTGAAAAGAAAA+TGG + chr3_4:17095633-17095652 Msa0492890:three_prime_UTR 20.0%
!!! TTAACCATTTTCTTTTCAAA+TGG - chr3_4:17095640-17095659 None:intergenic 20.0%
!!! ATGACAACTTTATTTAAACA+TGG + chr3_4:17095687-17095706 Msa0492890:three_prime_UTR 20.0%
! AAATACACTCTTGTAGTAAT+AGG + chr3_4:17092570-17092589 Msa0492890:five_prime_UTR 25.0%
! TCTTTCAAAAGATCAACAAT+GGG - chr3_4:17092685-17092704 None:intergenic 25.0%
! TTCTTTCAAAAGATCAACAA+TGG - chr3_4:17092686-17092705 None:intergenic 25.0%
!!! ATCAAATGGGCTATAAAAAT+TGG - chr3_4:17092725-17092744 None:intergenic 25.0%
! AGAAATAGCATCTATCAAAT+GGG - chr3_4:17092738-17092757 None:intergenic 25.0%
! AAGAAATAGCATCTATCAAA+TGG - chr3_4:17092739-17092758 None:intergenic 25.0%
!! AGTTGAGTCAAGTTTTTATA+TGG + chr3_4:17092902-17092921 Msa0492890:intron 25.0%
!!! AAGAAAAGATGAAGTGTTTT+TGG + chr3_4:17093173-17093192 Msa0492890:intron 25.0%
! AAAACTTTAGATCTTAGTTG+TGG + chr3_4:17093215-17093234 Msa0492890:intron 25.0%
! AAACTTTAGATCTTAGTTGT+GGG + chr3_4:17093216-17093235 Msa0492890:intron 25.0%
! ATATGATATATGCCTTTGAA+TGG + chr3_4:17093717-17093736 Msa0492890:intron 25.0%
! AATAAAACAGTATTGTCAAC+CGG - chr3_4:17093890-17093909 None:intergenic 25.0%
! ATTTCTCAAACTCATTATCT+AGG - chr3_4:17094258-17094277 None:intergenic 25.0%
! ATGTACAAATCTTTGAACAT+AGG + chr3_4:17094465-17094484 Msa0492890:intron 25.0%
! GATTAAATCCAAGACATATA+AGG - chr3_4:17094686-17094705 None:intergenic 25.0%
! ATATGAATTGCCTTTACTTT+AGG - chr3_4:17094916-17094935 None:intergenic 25.0%
!! TGTCTTTGTATTTTTCTTGT+TGG + chr3_4:17095396-17095415 Msa0492890:three_prime_UTR 25.0%
! AATGGTTAATGTAAGTTACA+TGG + chr3_4:17095529-17095548 Msa0492890:three_prime_UTR 25.0%
! TGAGTTGAAACAAAGCAAAA+TGG - chr3_4:17092496-17092515 None:intergenic 30.0%
! CATAACATGATGATGTTTCA+TGG - chr3_4:17092599-17092618 None:intergenic 30.0%
TTTCTTCAAAGGATCAACAA+TGG - chr3_4:17092778-17092797 None:intergenic 30.0%
! TAAGTTCACTATACTAGCTT+TGG - chr3_4:17092874-17092893 None:intergenic 30.0%
! GAGTCAAGTTTTTATATGGA+TGG + chr3_4:17092906-17092925 Msa0492890:intron 30.0%
!! TAGTCTTATTAGCTTGATGA+TGG + chr3_4:17093125-17093144 Msa0492890:intron 30.0%
!!! AAAAGATGAAGTGTTTTTGG+AGG + chr3_4:17093176-17093195 Msa0492890:intron 30.0%
TATCATAATAAACGTCTACG+TGG + chr3_4:17093565-17093584 Msa0492890:intron 30.0%
TACCAATGAAATTGCTTCAT+TGG + chr3_4:17093679-17093698 Msa0492890:intron 30.0%
TACCAATGAAGCAATTTCAT+TGG - chr3_4:17093684-17093703 None:intergenic 30.0%
!! AAATTATTTTTCACGATCCC+CGG + chr3_4:17093868-17093887 Msa0492890:intron 30.0%
ATAAAACAGTATTGTCAACC+GGG - chr3_4:17093889-17093908 None:intergenic 30.0%
! ATATTTTATGCACTCTGTGT+AGG + chr3_4:17093931-17093950 Msa0492890:intron 30.0%
TGTGCTGAAGTTATTGTATT+TGG + chr3_4:17093956-17093975 Msa0492890:five_prime_UTR 30.0%
!! TTTTGATCTTGGTATTGAAG+AGG + chr3_4:17094222-17094241 Msa0492890:CDS 30.0%
!!! TATCACCACATACACTTTTT+TGG - chr3_4:17094660-17094679 None:intergenic 30.0%
TGATACAACCTTATATGTCT+TGG + chr3_4:17094675-17094694 Msa0492890:intron 30.0%
ATTTAATCGATATGTACCGA+CGG + chr3_4:17094698-17094717 Msa0492890:intron 30.0%
GTAAAACAAAATTACACCGT+CGG - chr3_4:17094717-17094736 None:intergenic 30.0%
TGTCAATCAATTGCAATCAT+TGG + chr3_4:17094739-17094758 Msa0492890:intron 30.0%
!! AAATCGATTTGATACACTGT+CGG - chr3_4:17094856-17094875 None:intergenic 30.0%
! ACATTAGATTTACTAGCTTC+GGG - chr3_4:17094979-17094998 None:intergenic 30.0%
! CACATTAGATTTACTAGCTT+CGG - chr3_4:17094980-17094999 None:intergenic 30.0%
ATCTTAATCAGGTGTTAACA+AGG + chr3_4:17095123-17095142 Msa0492890:intron 30.0%
! TAACTTGTGTATAGAGAAGA+AGG + chr3_4:17095365-17095384 Msa0492890:three_prime_UTR 30.0%
CATGTAGTGTATTTAATGGT+AGG + chr3_4:17095423-17095442 Msa0492890:three_prime_UTR 30.0%
CTCAAATCTTGGAATGTTTA+TGG + chr3_4:17095468-17095487 Msa0492890:three_prime_UTR 30.0%
TATAAAATGGAACCATCACA+TGG - chr3_4:17095715-17095734 None:intergenic 30.0%
TCACTAGGAATTGATGTGAT+GGG + chr3_4:17093019-17093038 Msa0492890:intron 35.0%
!! GGGTTTGATGATTTTCTTTG+TGG + chr3_4:17093039-17093058 Msa0492890:intron 35.0%
TAAAACAGTATTGTCAACCG+GGG - chr3_4:17093888-17093907 None:intergenic 35.0%
CGACATGGTTTCATAACTAT+TGG + chr3_4:17094110-17094129 Msa0492890:CDS 35.0%
! CTGTCAGAAACTTTTGATCT+TGG + chr3_4:17094211-17094230 Msa0492890:CDS 35.0%
ATTCAATGCTTACCATGAAC+AGG - chr3_4:17094343-17094362 None:intergenic 35.0%
TCAAACTAAATAGGTCCTTG+AGG + chr3_4:17094631-17094650 Msa0492890:intron 35.0%
!!! ACACTTTTTTGGATACCTCA+AGG - chr3_4:17094649-17094668 None:intergenic 35.0%
! GGTATCCAAAAAAGTGTATG+TGG + chr3_4:17094652-17094671 Msa0492890:intron 35.0%
TAAGCCTCAACCTAAAGTAA+AGG + chr3_4:17094903-17094922 Msa0492890:intron 35.0%
!! ATTGCCTTTACTTTAGGTTG+AGG - chr3_4:17094910-17094929 None:intergenic 35.0%
GTGCTTGCAATGTAAACTTT+AGG - chr3_4:17094957-17094976 None:intergenic 35.0%
ATTCAACGTTTCTCTTAACG+AGG - chr3_4:17095280-17095299 None:intergenic 35.0%
!! GTGAGACTTTCAAGTTTGAA+CGG + chr3_4:17095445-17095464 Msa0492890:three_prime_UTR 35.0%
TTAAACATGGAACCATGTGA+TGG + chr3_4:17095700-17095719 Msa0492890:three_prime_UTR 35.0%
CTCACTAGGAATTGATGTGA+TGG + chr3_4:17093018-17093037 Msa0492890:intron 40.0%
AAAACAACAGAGTGACAGCA+AGG - chr3_4:17093534-17093553 None:intergenic 40.0%
ATTTGGCTGACAAGTTGTGA+TGG + chr3_4:17093973-17093992 Msa0492890:exon 40.0%
! TGGAGGATTTTTCACCTCAA+TGG + chr3_4:17094068-17094087 Msa0492890:CDS 40.0%
! AGGATTTTTCACCTCAATGG+TGG + chr3_4:17094071-17094090 Msa0492890:CDS 40.0%
! GGATTTTTCACCTCAATGGT+GGG + chr3_4:17094072-17094091 Msa0492890:CDS 40.0%
AGCTTGTGAAATCTTCGACA+TGG + chr3_4:17094095-17094114 Msa0492890:CDS 40.0%
CAAAATCTTCCTCCTTATGC+TGG - chr3_4:17094141-17094160 None:intergenic 40.0%
! GAGGAAGATTTTGTCGAAAG+TGG + chr3_4:17094148-17094167 Msa0492890:CDS 40.0%
! GAAGATTTTGTCGAAAGTGG+CGG + chr3_4:17094151-17094170 Msa0492890:CDS 40.0%
TCAACAGGATCATCCATAAC+TGG - chr3_4:17094310-17094329 None:intergenic 40.0%
AGTTATGGATGATCCTGTTG+AGG + chr3_4:17094309-17094328 Msa0492890:CDS 40.0%
!!! ACAGGCTTTTTTTCCTCAAC+AGG - chr3_4:17094325-17094344 None:intergenic 40.0%
GAGGAAAAAAAGCCTGTTCA+TGG + chr3_4:17094328-17094347 Msa0492890:CDS 40.0%
TACAAAGGGTGATCTGTGAT+TGG + chr3_4:17094807-17094826 Msa0492890:intron 40.0%
TCTAATGTGTCAAACCTCCA+AGG + chr3_4:17094991-17095010 Msa0492890:intron 40.0%
GGAATCGAACGCAAAATTCT+AGG - chr3_4:17095063-17095082 None:intergenic 40.0%
TCTCAAGATCTTGTCACCAA+AGG + chr3_4:17095159-17095178 Msa0492890:CDS 40.0%
AGATCTTGTCACCAAAGGAA+AGG + chr3_4:17095164-17095183 Msa0492890:CDS 40.0%
GATCTTGTCACCAAAGGAAA+GGG + chr3_4:17095165-17095184 Msa0492890:CDS 40.0%
ATCTTGTCACCAAAGGAAAG+GGG + chr3_4:17095166-17095185 Msa0492890:CDS 40.0%
TTGAGGTTAACATGTTGTGC+TGG - chr3_4:17095232-17095251 None:intergenic 40.0%
AACGTTTCTCTTAACGAGGT+TGG - chr3_4:17095276-17095295 None:intergenic 40.0%
TGTGTATAGAGAAGAAGGTG+TGG + chr3_4:17095370-17095389 Msa0492890:three_prime_UTR 40.0%
AGTTTGAACGGCTCAAATCT+TGG + chr3_4:17095457-17095476 Msa0492890:three_prime_UTR 40.0%
ATCCAATTACCACACTGAAC+AGG - chr3_4:17095591-17095610 None:intergenic 40.0%
CTGACAAGTTGTGATGGCAT+TGG + chr3_4:17093979-17093998 Msa0492890:exon 45.0%
!! GTTGTGATGGCATTGGTAAC+TGG + chr3_4:17093986-17094005 Msa0492890:exon 45.0%
! GGTATGAAGAGAGGTGCATT+TGG - chr3_4:17094031-17094050 None:intergenic 45.0%
AATGCAGCAGGTATGAAGAG+AGG - chr3_4:17094040-17094059 None:intergenic 45.0%
! CTATTGGTTGAGCCAGCATA+AGG + chr3_4:17094126-17094145 Msa0492890:CDS 45.0%
!! AGCTCAAGAGTGTCCAGTTA+TGG + chr3_4:17094294-17094313 Msa0492890:CDS 45.0%
CTACTACTTGAGCTACACCT+TGG - chr3_4:17095011-17095030 None:intergenic 45.0%
GTAGTAGTGTGCACTGTGTA+CGG + chr3_4:17095024-17095043 Msa0492890:intron 45.0%
TAGTAGTGTGCACTGTGTAC+GGG + chr3_4:17095025-17095044 Msa0492890:intron 45.0%
!! TTCTTTGAGGTGCACACTTG+AGG - chr3_4:17095249-17095268 None:intergenic 45.0%
!! CGAGGTTGGTGAATTCTTTG+AGG - chr3_4:17095262-17095281 None:intergenic 45.0%
GTCCTGTTCAGTGTGGTAAT+TGG + chr3_4:17095586-17095605 Msa0492890:three_prime_UTR 45.0%
GAAGCAAGCGTGATCTTCTC+TGG + chr3_4:17093249-17093268 Msa0492890:intron 50.0%
ACCTGCTGCATTTCGTCAAG+TGG + chr3_4:17094048-17094067 Msa0492890:CDS 50.0%
TCCACTTGACGAAATGCAGC+AGG - chr3_4:17094052-17094071 None:intergenic 50.0%
TGCTGCATTTCGTCAAGTGG+AGG + chr3_4:17094051-17094070 Msa0492890:CDS 50.0%
TTCACAAGCTCCCACCATTG+AGG - chr3_4:17094085-17094104 None:intergenic 50.0%
TTGGTTGAGCCAGCATAAGG+AGG + chr3_4:17094129-17094148 Msa0492890:CDS 50.0%
TGGACACTCTTGAGCTTCGT+CGG - chr3_4:17094290-17094309 None:intergenic 50.0%
CTACTTGAGCTACACCTTGG+AGG - chr3_4:17095008-17095027 None:intergenic 50.0%
AGTAGTGTGCACTGTGTACG+GGG + chr3_4:17095026-17095045 Msa0492890:intron 50.0%
GACTTGACACCCCTTTCCTT+TGG - chr3_4:17095178-17095197 None:intergenic 50.0%
!! AGTGCTTTGGAGACCCGATA+GGG - chr3_4:17095201-17095220 None:intergenic 50.0%
!! AAGTGCTTTGGAGACCCGAT+AGG - chr3_4:17095202-17095221 None:intergenic 50.0%
! GCTGGCTTCTCAAAGTGCTT+TGG - chr3_4:17095214-17095233 None:intergenic 50.0%
TAGGTGTGTCCTGTTCAGTG+TGG + chr3_4:17095579-17095598 Msa0492890:three_prime_UTR 50.0%
GTAGTGTGCACTGTGTACGG+GGG + chr3_4:17095027-17095046 Msa0492890:intron 55.0%
!! AGGGGTGTCAAGTCCCCTAT+CGG + chr3_4:17095184-17095203 Msa0492890:CDS 55.0%
!! GTGCTTTGGAGACCCGATAG+GGG - chr3_4:17095200-17095219 None:intergenic 55.0%
! GGGGTGTCAAGTCCCCTATC+GGG + chr3_4:17095185-17095204 Msa0492890:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 17092473 17095745 17092473 ID=Msa0492890;Name=Msa0492890
chr3_4 mRNA 17092473 17095745 17092473 ID=Msa0492890-mRNA-1;Parent=Msa0492890;Name=Msa0492890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|0.5|0.33|3|460|169
chr3_4 exon 17092473 17092591 17092473 ID=Msa0492890-mRNA-1:exon:4820;Parent=Msa0492890-mRNA-1
chr3_4 exon 17093953 17094349 17093953 ID=Msa0492890-mRNA-1:exon:4821;Parent=Msa0492890-mRNA-1
chr3_4 exon 17095134 17095745 17095134 ID=Msa0492890-mRNA-1:exon:4822;Parent=Msa0492890-mRNA-1
chr3_4 five_prime_UTR 17092473 17092591 17092473 ID=Msa0492890-mRNA-1:five_prime_utr;Parent=Msa0492890-mRNA-1
chr3_4 five_prime_UTR 17093953 17093991 17093953 ID=Msa0492890-mRNA-1:five_prime_utr;Parent=Msa0492890-mRNA-1
chr3_4 CDS 17093992 17094349 17093992 ID=Msa0492890-mRNA-1:cds;Parent=Msa0492890-mRNA-1
chr3_4 CDS 17095134 17095285 17095134 ID=Msa0492890-mRNA-1:cds;Parent=Msa0492890-mRNA-1
chr3_4 three_prime_UTR 17095286 17095745 17095286 ID=Msa0492890-mRNA-1:three_prime_utr;Parent=Msa0492890-mRNA-1
Gene Sequence

>Msa0492890

ATGGCATTGGTAACTGGAAGAAGTTCAGCGCTGAATCCAAATGCACCTCTCTTCATACCTGCTGCATTTCGTCAAGTGGAGGATTTTTCACCTCAATGGTGGGAGCTTGTGAAATCTTCGACATGGTTTCATAACTATTGGTTGAGCCAGCATAAGGAGGAAGATTTTGTCGAAAGTGGCGGAAACGATGCTACAAATGATGATGATATAGAACATATGCTGTCAGAAACTTTTGATCTTGGTATTGAAGAGGATTTCAACTTCCTAGATAATGAGTTTGAGAAATTGTTGATGTCCGACGAAGCTCAAGAGTGTCCAGTTATGGATGATCCTGTTGAGGAAAAAAAGCCTGTTCATGGTGTTAACAAGGATGCTGCAGCTCTTCTCAAGATCTTGTCACCAAAGGAAAGGGGTGTCAAGTCCCCTATCGGGTCTCCAAAGCACTTTGAGAAGCCAGCACAACATGTTAACCTCAAGTGTGCACCTCAAAGAATTCACCAACCTCGTTAA
Protein sequence

>Msa0492890

MALVTGRSSALNPNAPLFIPAAFRQVEDFSPQWWELVKSSTWFHNYWLSQHKEEDFVESGGNDATNDDDIEHMLSETFDLGIEEDFNFLDNEFEKLLMSDEAQECPVMDDPVEEKKPVHGVNKDAAALLKILSPKERGVKSPIGSPKHFEKPAQHVNLKCAPQRIHQPR*