AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357900 MtrunA17_Chr4g0065831 86.154 130 0 1 1 112 1 130 5.31e-75 218
Msa0357900 MtrunA17_Chr4g0051921 85.385 130 1 1 1 112 1 130 1.51e-74 216
Msa0357900 MtrunA17_Chr1g0205971 85.385 130 1 1 1 112 1 130 1.51e-74 216
Msa0357900 MtrunA17_Chr8g0389371 46.400 125 49 1 6 112 5 129 1.48e-36 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357900 AT5G59850.1 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa0357900 AT1G07770.2 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa0357900 AT1G07770.3 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa0357900 AT1G07770.1 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa0357900 AT3G46040.1 83.846 130 3 1 1 112 1 130 2.86e-73 214
Msa0357900 AT2G39590.1 79.231 130 9 1 1 112 1 130 4.28e-69 203
Msa0357900 AT4G29430.1 45.600 125 50 1 6 112 5 129 8.11e-35 116
Msa0357900 AT2G19720.1 46.400 125 49 1 6 112 5 129 1.19e-34 116

Find 61 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATTGACCCCATGAATT+TGG 0.119068 3_1:-41928592 Msa0357900:three_prime_UTR
GACCACTTCTGCTGGTATTA+TGG 0.215449 3_1:-41929024 Msa0357900:CDS
CTTCGACGGCGACGTGTTTC+CGG 0.219090 3_1:-41930628 Msa0357900:five_prime_UTR
TATAGTTCCAAATCCATAAA+AGG 0.241591 3_1:-41928618 Msa0357900:three_prime_UTR
TGTTGAGCACTTTGATTATA+AGG 0.241849 3_1:-41928731 Msa0357900:three_prime_UTR
ACAATTAAGCCAGTACATTT+AGG 0.251416 3_1:+41928760 None:intergenic
GGCACCTTTCTCTTCTCTTT+CGG 0.298506 3_1:-41930607 Msa0357900:intron
TTATGCTTTATAGGTTATAT+TGG 0.301097 3_1:-41930236 Msa0357900:intron
ACTATTCTTGATATTACTAA+TGG 0.327101 3_1:+41928871 None:intergenic
CAATATCATATTCTAATAAC+TGG 0.338860 3_1:+41928675 None:intergenic
TGCTCTTTGTACATGACAAT+TGG 0.352382 3_1:+41928567 None:intergenic
ATAATTGACCCCATGAATTT+GGG 0.365305 3_1:-41928591 Msa0357900:three_prime_UTR
TATGATTAGGCCTTCCTCTA+AGG 0.385448 3_1:-41930420 Msa0357900:CDS
GACAATTGGACCCAAATTCA+TGG 0.397212 3_1:+41928581 None:intergenic
GAATTTGATGATGACCTTAG+AGG 0.411030 3_1:+41930406 None:intergenic
CGATGAAAATGTAAAGAAAT+CGG 0.412135 3_1:+41928785 None:intergenic
CATAGATATTTGAATTGATC+TGG 0.412306 3_1:-41928699 Msa0357900:three_prime_UTR
CAAAGAGCATTTGCAGATGC+AGG 0.442930 3_1:-41928553 Msa0357900:three_prime_UTR
GAAAGCGTCAAGTTATGATT+AGG 0.452540 3_1:-41930433 Msa0357900:CDS
TATGTTGATGATCACAGATC+TGG 0.452973 3_1:-41930203 Msa0357900:CDS
GATGAGACTTATATACTCCT+AGG 0.453293 3_1:+41930700 None:intergenic
GAGCACTTTGATTATAAGGT+TGG 0.453448 3_1:-41928727 Msa0357900:three_prime_UTR
TTAGTAATATCAAGAATAGT+AGG 0.463110 3_1:-41928868 Msa0357900:three_prime_UTR
GGTCCTTGGCTTCTTCTACT+AGG 0.468896 3_1:-41928964 Msa0357900:exon
ATATACTCCTAGGGTTTACA+AGG 0.475391 3_1:+41930710 None:intergenic
TTCATCGTACCTAAATGTAC+TGG 0.482111 3_1:-41928769 Msa0357900:three_prime_UTR
AATGTTGGTGGTAAGGTCCT+TGG 0.482167 3_1:-41928978 Msa0357900:CDS
AAAATCGTTGTTGAATTGAA+TGG 0.485579 3_1:-41930179 Msa0357900:CDS
GAGAAAGAATGTTGGTGGTA+AGG 0.495772 3_1:-41928985 Msa0357900:CDS
ATGGTAGGTTGAACAAATGT+GGG 0.519393 3_1:-41930160 Msa0357900:CDS
ATGAGACTTATATACTCCTA+GGG 0.523557 3_1:+41930701 None:intergenic
TCTGATTTCGATTTCTTCGA+CGG 0.524100 3_1:-41930642 Msa0357900:five_prime_UTR
ATCCATAATACCAGCAGAAG+TGG 0.531152 3_1:+41929022 None:intergenic
ACAATTGGACCCAAATTCAT+GGG 0.538561 3_1:+41928582 None:intergenic
ATGTACAATGCTGAGAAAAG+AGG 0.544704 3_1:-41930455 Msa0357900:CDS
ATAAATTATAGCAACCAACT+AGG 0.562234 3_1:+41928808 None:intergenic
ATGTTGATGATCACAGATCT+GGG 0.565212 3_1:-41930202 Msa0357900:CDS
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 3_1:-41928990 Msa0357900:CDS
GAAAGAGAAGAGAAAGGTGC+CGG 0.572924 3_1:+41930609 None:intergenic
TAGCCTAGTAGAAGAAGCCA+AGG 0.575489 3_1:+41928961 None:intergenic
AATGGTAGGTTGAACAAATG+TGG 0.577364 3_1:-41930161 Msa0357900:CDS
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 3_1:-41928993 Msa0357900:CDS
ACTAGGCTAGTTCCTTGTCG+AGG 0.584561 3_1:-41928947 Msa0357900:exon
TTATGGATCATGAAGAGGCT+AGG 0.585160 3_1:-41929007 Msa0357900:CDS
ATTAGAATATGATATTGCAT+AGG 0.588865 3_1:-41928669 Msa0357900:three_prime_UTR
TCAAAACCCTTGTAAACCCT+AGG 0.597062 3_1:-41930717 Msa0357900:five_prime_UTR
TTTGTGAATCTCAGAAACCA+TGG 0.598315 3_1:-41930513 Msa0357900:intron
TGGTATTATGGATCATGAAG+AGG 0.606467 3_1:-41929012 Msa0357900:CDS
TTGATGATGACCTTAGAGGA+AGG 0.613228 3_1:+41930410 None:intergenic
TCGCTTGCTGGATGTAATGG+TGG 0.613895 3_1:-41928904 Msa0357900:three_prime_UTR
TCGTTGTTGAATTGAATGGT+AGG 0.614641 3_1:-41930175 Msa0357900:CDS
CTTACCGAAAGAGAAGAGAA+AGG 0.616339 3_1:+41930603 None:intergenic
AAAGAGCATTTGCAGATGCA+GGG 0.628128 3_1:-41928552 None:intergenic
CAAAACACTGACTCTCACCA+TGG 0.638914 3_1:+41930496 None:intergenic
TTAACTTGTATGATACTCTG+TGG 0.643313 3_1:+41928646 None:intergenic
GTCGAAGAAATCGAAATCAG+AGG 0.662001 3_1:+41930644 None:intergenic
CAGAGGAAATGAAATCGCGA+CGG 0.678141 3_1:+41930661 None:intergenic
TATACTCCTAGGGTTTACAA+GGG 0.683859 3_1:+41930711 None:intergenic
CAATTGGACCCAAATTCATG+GGG 0.705879 3_1:+41928583 None:intergenic
TGGTAGGTTGAACAAATGTG+GGG 0.708928 3_1:-41930159 Msa0357900:CDS
TTGACACCGACATCAAAACG+AGG 0.734537 3_1:+41930128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAAATAATAACAATTTA+AGG + chr3_1:41930141-41930160 None:intergenic 10.0%
!! TCTTAAATAATAACAATTTA+AGG + chr3_1:41930141-41930160 None:intergenic 10.0%
!!! TTTGATTTGATATAATTTTG+TGG - chr3_1:41928989-41929008 Msa0357900:CDS 15.0%
!!! TTGATTTGATATAATTTTGT+GGG - chr3_1:41928990-41929009 Msa0357900:CDS 15.0%
!!! TTTTGATTTGATATATTTTG+TGG - chr3_1:41929041-41929060 Msa0357900:CDS 15.0%
!!! TTTGATTTGATATATTTTGT+GGG - chr3_1:41929042-41929061 Msa0357900:CDS 15.0%
!!! TTGAAAACAATACTAATTTT+TGG - chr3_1:41929244-41929263 Msa0357900:intron 15.0%
!!! TGAAAACAATACTAATTTTT+GGG - chr3_1:41929245-41929264 Msa0357900:intron 15.0%
!!! AACTTAATTTATCTTTTGAT+AGG - chr3_1:41929427-41929446 Msa0357900:intron 15.0%
!! CTAAAATTGATCATAAAAAA+CGG + chr3_1:41930017-41930036 None:intergenic 15.0%
!! TAATTATAAAATATGCAGTT+TGG - chr3_1:41930242-41930261 Msa0357900:intron 15.0%
!!! TTTGATTTGATATAATTTTG+TGG - chr3_1:41928989-41929008 Msa0357900:CDS 15.0%
!!! TTGATTTGATATAATTTTGT+GGG - chr3_1:41928990-41929009 Msa0357900:CDS 15.0%
!!! TTTTGATTTGATATATTTTG+TGG - chr3_1:41929041-41929060 Msa0357900:CDS 15.0%
!!! TTTGATTTGATATATTTTGT+GGG - chr3_1:41929042-41929061 Msa0357900:CDS 15.0%
!!! TTGAAAACAATACTAATTTT+TGG - chr3_1:41929244-41929263 Msa0357900:intron 15.0%
!!! TGAAAACAATACTAATTTTT+GGG - chr3_1:41929245-41929264 Msa0357900:intron 15.0%
!!! AACTTAATTTATCTTTTGAT+AGG - chr3_1:41929427-41929446 Msa0357900:intron 15.0%
!! CTAAAATTGATCATAAAAAA+CGG + chr3_1:41930017-41930036 None:intergenic 15.0%
!! TAATTATAAAATATGCAGTT+TGG - chr3_1:41930242-41930261 Msa0357900:intron 15.0%
!!! ATATTTTTTCCTTTCATTGA+AGG - chr3_1:41928942-41928961 Msa0357900:three_prime_UTR 20.0%
!! TTGCATGATTCAATTATTTA+GGG - chr3_1:41928965-41928984 Msa0357900:CDS 20.0%
!! TTATGCTTTATAGGTTATAT+TGG - chr3_1:41929065-41929084 Msa0357900:intron 20.0%
!! AAAACTAATAAATGTTGCAT+TGG + chr3_1:41929538-41929557 None:intergenic 20.0%
!! GGATGAAATTCATTAAATAA+GGG + chr3_1:41929574-41929593 None:intergenic 20.0%
!! TGGATGAAATTCATTAAATA+AGG + chr3_1:41929575-41929594 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr3_1:41929658-41929677 None:intergenic 20.0%
!!! AAAAAACGGAGATTTTTTTT+AGG + chr3_1:41930003-41930022 None:intergenic 20.0%
!!! TATTTAACTTATATGAACGT+TGG - chr3_1:41930166-41930185 Msa0357900:CDS 20.0%
!!! ATTTAACTTATATGAACGTT+GGG - chr3_1:41930167-41930186 Msa0357900:CDS 20.0%
!! ACTATTCTTGATATTACTAA+TGG + chr3_1:41930433-41930452 None:intergenic 20.0%
!! TTAGTAATATCAAGAATAGT+AGG - chr3_1:41930433-41930452 Msa0357900:CDS 20.0%
!! CAATATCATATTCTAATAAC+TGG + chr3_1:41930629-41930648 None:intergenic 20.0%
!! ATTAGAATATGATATTGCAT+AGG - chr3_1:41930632-41930651 Msa0357900:five_prime_UTR 20.0%
!!! ATATTTTTTCCTTTCATTGA+AGG - chr3_1:41928942-41928961 Msa0357900:three_prime_UTR 20.0%
!! TTGCATGATTCAATTATTTA+GGG - chr3_1:41928965-41928984 Msa0357900:CDS 20.0%
!! TTATGCTTTATAGGTTATAT+TGG - chr3_1:41929065-41929084 Msa0357900:intron 20.0%
!! AAAACTAATAAATGTTGCAT+TGG + chr3_1:41929538-41929557 None:intergenic 20.0%
!! GGATGAAATTCATTAAATAA+GGG + chr3_1:41929574-41929593 None:intergenic 20.0%
!! TGGATGAAATTCATTAAATA+AGG + chr3_1:41929575-41929594 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr3_1:41929658-41929677 None:intergenic 20.0%
!!! AAAAAACGGAGATTTTTTTT+AGG + chr3_1:41930003-41930022 None:intergenic 20.0%
!!! TATTTAACTTATATGAACGT+TGG - chr3_1:41930166-41930185 Msa0357900:CDS 20.0%
!!! ATTTAACTTATATGAACGTT+GGG - chr3_1:41930167-41930186 Msa0357900:CDS 20.0%
!! ACTATTCTTGATATTACTAA+TGG + chr3_1:41930433-41930452 None:intergenic 20.0%
!! TTAGTAATATCAAGAATAGT+AGG - chr3_1:41930433-41930452 Msa0357900:CDS 20.0%
!! CAATATCATATTCTAATAAC+TGG + chr3_1:41930629-41930648 None:intergenic 20.0%
!! ATTAGAATATGATATTGCAT+AGG - chr3_1:41930632-41930651 Msa0357900:five_prime_UTR 20.0%
!!! AGATTTTAAGAAGAAGAAGA+TGG + chr3_1:41928726-41928745 None:intergenic 25.0%
! TAAACAGTGATGAAATGAAA+TGG + chr3_1:41928752-41928771 None:intergenic 25.0%
! ATTTCATTTCATCACTGTTT+AGG - chr3_1:41928751-41928770 Msa0357900:three_prime_UTR 25.0%
! GTTGCATGATTCAATTATTT+AGG - chr3_1:41928964-41928983 Msa0357900:exon 25.0%
!! TATAATTTTGTGGGTATGTT+TGG - chr3_1:41928999-41929018 Msa0357900:CDS 25.0%
!!! TTTGGTGGTTCAATTTTTTA+GGG - chr3_1:41929017-41929036 Msa0357900:CDS 25.0%
! AAAATCGTTGTTGAATTGAA+TGG - chr3_1:41929122-41929141 Msa0357900:intron 25.0%
!!! TCAGCTTATTTTCATAAACA+TGG - chr3_1:41929378-41929397 Msa0357900:intron 25.0%
!! TGATTTGGAACAAATTTACT+CGG + chr3_1:41929885-41929904 None:intergenic 25.0%
! TCATGCTTCATATTAAAGAT+TGG - chr3_1:41929912-41929931 Msa0357900:intron 25.0%
! TATAGTTTCTTACTCCTATT+TGG - chr3_1:41929948-41929967 Msa0357900:intron 25.0%
! AAACAACATATACACACAAA+AGG + chr3_1:41930198-41930217 None:intergenic 25.0%
!!! TTTGTTTTACAAAACCTAGT+TGG - chr3_1:41930479-41930498 Msa0357900:CDS 25.0%
! ATAAATTATAGCAACCAACT+AGG + chr3_1:41930496-41930515 None:intergenic 25.0%
! CGATGAAAATGTAAAGAAAT+CGG + chr3_1:41930519-41930538 None:intergenic 25.0%
! CATAGATATTTGAATTGATC+TGG - chr3_1:41930602-41930621 Msa0357900:intron 25.0%
! TATAGTTCCAAATCCATAAA+AGG - chr3_1:41930683-41930702 Msa0357900:five_prime_UTR 25.0%
!! TATCAATCCTTTTATGGATT+TGG + chr3_1:41930693-41930712 None:intergenic 25.0%
!! GTCAATTATCAATCCTTTTA+TGG + chr3_1:41930699-41930718 None:intergenic 25.0%
!!! AGATTTTAAGAAGAAGAAGA+TGG + chr3_1:41928726-41928745 None:intergenic 25.0%
! TAAACAGTGATGAAATGAAA+TGG + chr3_1:41928752-41928771 None:intergenic 25.0%
! ATTTCATTTCATCACTGTTT+AGG - chr3_1:41928751-41928770 Msa0357900:three_prime_UTR 25.0%
! GTTGCATGATTCAATTATTT+AGG - chr3_1:41928964-41928983 Msa0357900:exon 25.0%
!! TATAATTTTGTGGGTATGTT+TGG - chr3_1:41928999-41929018 Msa0357900:CDS 25.0%
!!! TTTGGTGGTTCAATTTTTTA+GGG - chr3_1:41929017-41929036 Msa0357900:CDS 25.0%
! AAAATCGTTGTTGAATTGAA+TGG - chr3_1:41929122-41929141 Msa0357900:intron 25.0%
!!! TCAGCTTATTTTCATAAACA+TGG - chr3_1:41929378-41929397 Msa0357900:intron 25.0%
!! TGATTTGGAACAAATTTACT+CGG + chr3_1:41929885-41929904 None:intergenic 25.0%
! TCATGCTTCATATTAAAGAT+TGG - chr3_1:41929912-41929931 Msa0357900:intron 25.0%
! TATAGTTTCTTACTCCTATT+TGG - chr3_1:41929948-41929967 Msa0357900:intron 25.0%
! AAACAACATATACACACAAA+AGG + chr3_1:41930198-41930217 None:intergenic 25.0%
!!! TTTGTTTTACAAAACCTAGT+TGG - chr3_1:41930479-41930498 Msa0357900:CDS 25.0%
! ATAAATTATAGCAACCAACT+AGG + chr3_1:41930496-41930515 None:intergenic 25.0%
! CGATGAAAATGTAAAGAAAT+CGG + chr3_1:41930519-41930538 None:intergenic 25.0%
! CATAGATATTTGAATTGATC+TGG - chr3_1:41930602-41930621 Msa0357900:intron 25.0%
! TATAGTTCCAAATCCATAAA+AGG - chr3_1:41930683-41930702 Msa0357900:five_prime_UTR 25.0%
!! TATCAATCCTTTTATGGATT+TGG + chr3_1:41930693-41930712 None:intergenic 25.0%
!! GTCAATTATCAATCCTTTTA+TGG + chr3_1:41930699-41930718 None:intergenic 25.0%
ATGAGACTTATATACTCCTA+GGG + chr3_1:41928603-41928622 None:intergenic 30.0%
!!! GTTTGGTGGTTCAATTTTTT+AGG - chr3_1:41929016-41929035 Msa0357900:CDS 30.0%
!! TTTTGTGGGTTATGCTTTAT+AGG - chr3_1:41929056-41929075 Msa0357900:intron 30.0%
TTATCACTTGTGAGAATGTT+TGG - chr3_1:41929312-41929331 Msa0357900:intron 30.0%
TATCACTTGTGAGAATGTTT+GGG - chr3_1:41929313-41929332 Msa0357900:intron 30.0%
TTTGGGAGAACTTATGAAAA+CGG - chr3_1:41929330-41929349 Msa0357900:intron 30.0%
TCCACCAACTACAATTAATA+AGG - chr3_1:41929605-41929624 Msa0357900:intron 30.0%
CCACCAACTACAATTAATAA+GGG - chr3_1:41929606-41929625 Msa0357900:intron 30.0%
ACACCCTTATTAATTGTAGT+TGG + chr3_1:41929612-41929631 None:intergenic 30.0%
CTCACAATATTAGTCGTTTA+AGG + chr3_1:41929706-41929725 None:intergenic 30.0%
AAACGACTAATATTGTGAGA+CGG - chr3_1:41929707-41929726 Msa0357900:intron 30.0%
CATAGCTATATGTAAGAACA+TGG + chr3_1:41929773-41929792 None:intergenic 30.0%
AAGTTCACACAAATATGCAT+TGG + chr3_1:41929812-41929831 None:intergenic 30.0%
ATTTACTCGGCTTAACAAAA+TGG + chr3_1:41929872-41929891 None:intergenic 30.0%
AAGCATGAACTATCATGATT+TGG + chr3_1:41929900-41929919 None:intergenic 30.0%
!! TCAATTTTAGCCTTTACTAG+AGG - chr3_1:41930027-41930046 Msa0357900:intron 30.0%
ACAATTAAGCCAGTACATTT+AGG + chr3_1:41930544-41930563 None:intergenic 30.0%
TGTTGAGCACTTTGATTATA+AGG - chr3_1:41930570-41930589 Msa0357900:intron 30.0%
!! TTAACTTGTATGATACTCTG+TGG + chr3_1:41930658-41930677 None:intergenic 30.0%
ATAATTGACCCCATGAATTT+GGG - chr3_1:41930710-41930729 Msa0357900:five_prime_UTR 30.0%
ATGAGACTTATATACTCCTA+GGG + chr3_1:41928603-41928622 None:intergenic 30.0%
!!! GTTTGGTGGTTCAATTTTTT+AGG - chr3_1:41929016-41929035 Msa0357900:CDS 30.0%
!! TTTTGTGGGTTATGCTTTAT+AGG - chr3_1:41929056-41929075 Msa0357900:intron 30.0%
TTATCACTTGTGAGAATGTT+TGG - chr3_1:41929312-41929331 Msa0357900:intron 30.0%
TATCACTTGTGAGAATGTTT+GGG - chr3_1:41929313-41929332 Msa0357900:intron 30.0%
TTTGGGAGAACTTATGAAAA+CGG - chr3_1:41929330-41929349 Msa0357900:intron 30.0%
TCCACCAACTACAATTAATA+AGG - chr3_1:41929605-41929624 Msa0357900:intron 30.0%
CCACCAACTACAATTAATAA+GGG - chr3_1:41929606-41929625 Msa0357900:intron 30.0%
ACACCCTTATTAATTGTAGT+TGG + chr3_1:41929612-41929631 None:intergenic 30.0%
CTCACAATATTAGTCGTTTA+AGG + chr3_1:41929706-41929725 None:intergenic 30.0%
AAACGACTAATATTGTGAGA+CGG - chr3_1:41929707-41929726 Msa0357900:intron 30.0%
CATAGCTATATGTAAGAACA+TGG + chr3_1:41929773-41929792 None:intergenic 30.0%
AAGTTCACACAAATATGCAT+TGG + chr3_1:41929812-41929831 None:intergenic 30.0%
ATTTACTCGGCTTAACAAAA+TGG + chr3_1:41929872-41929891 None:intergenic 30.0%
AAGCATGAACTATCATGATT+TGG + chr3_1:41929900-41929919 None:intergenic 30.0%
!! TCAATTTTAGCCTTTACTAG+AGG - chr3_1:41930027-41930046 Msa0357900:intron 30.0%
ACAATTAAGCCAGTACATTT+AGG + chr3_1:41930544-41930563 None:intergenic 30.0%
TGTTGAGCACTTTGATTATA+AGG - chr3_1:41930570-41930589 Msa0357900:intron 30.0%
!! TTAACTTGTATGATACTCTG+TGG + chr3_1:41930658-41930677 None:intergenic 30.0%
ATAATTGACCCCATGAATTT+GGG - chr3_1:41930710-41930729 Msa0357900:five_prime_UTR 30.0%
TATACTCCTAGGGTTTACAA+GGG + chr3_1:41928593-41928612 None:intergenic 35.0%
ATATACTCCTAGGGTTTACA+AGG + chr3_1:41928594-41928613 None:intergenic 35.0%
GATGAGACTTATATACTCCT+AGG + chr3_1:41928604-41928623 None:intergenic 35.0%
TCTGATTTCGATTTCTTCGA+CGG - chr3_1:41928659-41928678 Msa0357900:three_prime_UTR 35.0%
TTTGTGAATCTCAGAAACCA+TGG - chr3_1:41928788-41928807 Msa0357900:three_prime_UTR 35.0%
ATGTACAATGCTGAGAAAAG+AGG - chr3_1:41928846-41928865 Msa0357900:three_prime_UTR 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG - chr3_1:41928868-41928887 Msa0357900:three_prime_UTR 35.0%
!! GAATTTGATGATGACCTTAG+AGG + chr3_1:41928898-41928917 None:intergenic 35.0%
CTCATCGTTATGCAAAAACA+CGG - chr3_1:41928918-41928937 Msa0357900:three_prime_UTR 35.0%
ATCATGCAACCTTCAATGAA+AGG + chr3_1:41928954-41928973 None:intergenic 35.0%
! AATTTTGTGGGTATGTTTGG+TGG - chr3_1:41929002-41929021 Msa0357900:CDS 35.0%
!! TATGTTGATGATCACAGATC+TGG - chr3_1:41929098-41929117 Msa0357900:intron 35.0%
!! ATGTTGATGATCACAGATCT+GGG - chr3_1:41929099-41929118 Msa0357900:intron 35.0%
TCGTTGTTGAATTGAATGGT+AGG - chr3_1:41929126-41929145 Msa0357900:intron 35.0%
! AATGGTAGGTTGAACAAATG+TGG - chr3_1:41929140-41929159 Msa0357900:intron 35.0%
! ATGGTAGGTTGAACAAATGT+GGG - chr3_1:41929141-41929160 Msa0357900:intron 35.0%
!! ATTAGTCCTCGTTTTGATGT+CGG - chr3_1:41929167-41929186 Msa0357900:intron 35.0%
CCCTTATTAATTGTAGTTGG+TGG + chr3_1:41929609-41929628 None:intergenic 35.0%
AGGTTTGTGCACGATTATTA+AGG + chr3_1:41929686-41929705 None:intergenic 35.0%
AGTAAGCTGTTTATCCAAAC+AGG - chr3_1:41929746-41929765 Msa0357900:intron 35.0%
ACACAAATATGCATTGGAAG+TGG + chr3_1:41929806-41929825 None:intergenic 35.0%
! TTACTCCTATTTGGTCTTTG+TGG - chr3_1:41929957-41929976 Msa0357900:intron 35.0%
TTGTTCCACAAAGACCAAAT+AGG + chr3_1:41929965-41929984 None:intergenic 35.0%
CACATAAAAGCCTCTAGTAA+AGG + chr3_1:41930040-41930059 None:intergenic 35.0%
! TTACTAGAGGCTTTTATGTG+TGG - chr3_1:41930040-41930059 Msa0357900:intron 35.0%
!! TCTGTCAACAATTTGTTGCT+TGG - chr3_1:41930079-41930098 Msa0357900:intron 35.0%
! ATTTGTTGCTTGGATGATCT+AGG - chr3_1:41930089-41930108 Msa0357900:intron 35.0%
TGGTATTATGGATCATGAAG+AGG - chr3_1:41930289-41930308 Msa0357900:intron 35.0%
AATCTCAAAAATCCTCGACA+AGG + chr3_1:41930369-41930388 None:intergenic 35.0%
TTCATCGTACCTAAATGTAC+TGG - chr3_1:41930532-41930551 Msa0357900:intron 35.0%
GAGCACTTTGATTATAAGGT+TGG - chr3_1:41930574-41930593 Msa0357900:intron 35.0%
GATAATTGACCCCATGAATT+TGG - chr3_1:41930709-41930728 Msa0357900:five_prime_UTR 35.0%
ACAATTGGACCCAAATTCAT+GGG + chr3_1:41930722-41930741 None:intergenic 35.0%
TGCTCTTTGTACATGACAAT+TGG + chr3_1:41930737-41930756 None:intergenic 35.0%
TATACTCCTAGGGTTTACAA+GGG + chr3_1:41928593-41928612 None:intergenic 35.0%
ATATACTCCTAGGGTTTACA+AGG + chr3_1:41928594-41928613 None:intergenic 35.0%
GATGAGACTTATATACTCCT+AGG + chr3_1:41928604-41928623 None:intergenic 35.0%
TCTGATTTCGATTTCTTCGA+CGG - chr3_1:41928659-41928678 Msa0357900:three_prime_UTR 35.0%
TTTGTGAATCTCAGAAACCA+TGG - chr3_1:41928788-41928807 Msa0357900:three_prime_UTR 35.0%
ATGTACAATGCTGAGAAAAG+AGG - chr3_1:41928846-41928865 Msa0357900:three_prime_UTR 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG - chr3_1:41928868-41928887 Msa0357900:three_prime_UTR 35.0%
!! GAATTTGATGATGACCTTAG+AGG + chr3_1:41928898-41928917 None:intergenic 35.0%
CTCATCGTTATGCAAAAACA+CGG - chr3_1:41928918-41928937 Msa0357900:three_prime_UTR 35.0%
ATCATGCAACCTTCAATGAA+AGG + chr3_1:41928954-41928973 None:intergenic 35.0%
! AATTTTGTGGGTATGTTTGG+TGG - chr3_1:41929002-41929021 Msa0357900:CDS 35.0%
!! TATGTTGATGATCACAGATC+TGG - chr3_1:41929098-41929117 Msa0357900:intron 35.0%
!! ATGTTGATGATCACAGATCT+GGG - chr3_1:41929099-41929118 Msa0357900:intron 35.0%
TCGTTGTTGAATTGAATGGT+AGG - chr3_1:41929126-41929145 Msa0357900:intron 35.0%
! AATGGTAGGTTGAACAAATG+TGG - chr3_1:41929140-41929159 Msa0357900:intron 35.0%
! ATGGTAGGTTGAACAAATGT+GGG - chr3_1:41929141-41929160 Msa0357900:intron 35.0%
!! ATTAGTCCTCGTTTTGATGT+CGG - chr3_1:41929167-41929186 Msa0357900:intron 35.0%
CCCTTATTAATTGTAGTTGG+TGG + chr3_1:41929609-41929628 None:intergenic 35.0%
AGGTTTGTGCACGATTATTA+AGG + chr3_1:41929686-41929705 None:intergenic 35.0%
AGTAAGCTGTTTATCCAAAC+AGG - chr3_1:41929746-41929765 Msa0357900:intron 35.0%
ACACAAATATGCATTGGAAG+TGG + chr3_1:41929806-41929825 None:intergenic 35.0%
! TTACTCCTATTTGGTCTTTG+TGG - chr3_1:41929957-41929976 Msa0357900:intron 35.0%
TTGTTCCACAAAGACCAAAT+AGG + chr3_1:41929965-41929984 None:intergenic 35.0%
CACATAAAAGCCTCTAGTAA+AGG + chr3_1:41930040-41930059 None:intergenic 35.0%
! TTACTAGAGGCTTTTATGTG+TGG - chr3_1:41930040-41930059 Msa0357900:intron 35.0%
!! TCTGTCAACAATTTGTTGCT+TGG - chr3_1:41930079-41930098 Msa0357900:intron 35.0%
! ATTTGTTGCTTGGATGATCT+AGG - chr3_1:41930089-41930108 Msa0357900:intron 35.0%
TGGTATTATGGATCATGAAG+AGG - chr3_1:41930289-41930308 Msa0357900:intron 35.0%
AATCTCAAAAATCCTCGACA+AGG + chr3_1:41930369-41930388 None:intergenic 35.0%
TTCATCGTACCTAAATGTAC+TGG - chr3_1:41930532-41930551 Msa0357900:intron 35.0%
GAGCACTTTGATTATAAGGT+TGG - chr3_1:41930574-41930593 Msa0357900:intron 35.0%
GATAATTGACCCCATGAATT+TGG - chr3_1:41930709-41930728 Msa0357900:five_prime_UTR 35.0%
ACAATTGGACCCAAATTCAT+GGG + chr3_1:41930722-41930741 None:intergenic 35.0%
TGCTCTTTGTACATGACAAT+TGG + chr3_1:41930737-41930756 None:intergenic 35.0%
TCAAAACCCTTGTAAACCCT+AGG - chr3_1:41928584-41928603 Msa0357900:three_prime_UTR 40.0%
GTCGAAGAAATCGAAATCAG+AGG + chr3_1:41928660-41928679 None:intergenic 40.0%
CTTACCGAAAGAGAAGAGAA+AGG + chr3_1:41928701-41928720 None:intergenic 40.0%
TATGATTAGGCCTTCCTCTA+AGG - chr3_1:41928881-41928900 Msa0357900:three_prime_UTR 40.0%
!! TTGATGATGACCTTAGAGGA+AGG + chr3_1:41928894-41928913 None:intergenic 40.0%
!! CGTGTTTTTGCATAACGATG+AGG + chr3_1:41928920-41928939 None:intergenic 40.0%
! TGGTAGGTTGAACAAATGTG+GGG - chr3_1:41929142-41929161 Msa0357900:intron 40.0%
! TTGTTTTCAACTGACCTGTC+TGG + chr3_1:41929234-41929253 None:intergenic 40.0%
! TTCTTTTGCATAGTGTCTGC+TGG - chr3_1:41929272-41929291 Msa0357900:intron 40.0%
!! AGTTGGTGGAGTAGTTAAGT+TGG + chr3_1:41929595-41929614 None:intergenic 40.0%
GACTAATATTGTGAGACGGA+GGG - chr3_1:41929711-41929730 Msa0357900:intron 40.0%
TGTAAGAACATGGTCCTGTT+TGG + chr3_1:41929763-41929782 None:intergenic 40.0%
! CTTCAGTGTTATCGATTGCA+TGG - chr3_1:41929843-41929862 Msa0357900:intron 40.0%
!!! ATTGTTTTGACCACTTCTGC+TGG - chr3_1:41930269-41930288 Msa0357900:intron 40.0%
ATCCATAATACCAGCAGAAG+TGG + chr3_1:41930282-41930301 None:intergenic 40.0%
TTATGGATCATGAAGAGGCT+AGG - chr3_1:41930294-41930313 Msa0357900:intron 40.0%
!! GAGAAAGAATGTTGGTGGTA+AGG - chr3_1:41930316-41930335 Msa0357900:intron 40.0%
! GATTTCAGTTTTTCGCTTGC+TGG - chr3_1:41930385-41930404 Msa0357900:CDS 40.0%
!! TTTTCGCTTGCTGGATGTAA+TGG - chr3_1:41930394-41930413 Msa0357900:CDS 40.0%
CAATTGGACCCAAATTCATG+GGG + chr3_1:41930721-41930740 None:intergenic 40.0%
GACAATTGGACCCAAATTCA+TGG + chr3_1:41930723-41930742 None:intergenic 40.0%
TCAAAACCCTTGTAAACCCT+AGG - chr3_1:41928584-41928603 Msa0357900:three_prime_UTR 40.0%
GTCGAAGAAATCGAAATCAG+AGG + chr3_1:41928660-41928679 None:intergenic 40.0%
CTTACCGAAAGAGAAGAGAA+AGG + chr3_1:41928701-41928720 None:intergenic 40.0%
TATGATTAGGCCTTCCTCTA+AGG - chr3_1:41928881-41928900 Msa0357900:three_prime_UTR 40.0%
!! TTGATGATGACCTTAGAGGA+AGG + chr3_1:41928894-41928913 None:intergenic 40.0%
!! CGTGTTTTTGCATAACGATG+AGG + chr3_1:41928920-41928939 None:intergenic 40.0%
! TGGTAGGTTGAACAAATGTG+GGG - chr3_1:41929142-41929161 Msa0357900:intron 40.0%
! TTGTTTTCAACTGACCTGTC+TGG + chr3_1:41929234-41929253 None:intergenic 40.0%
! TTCTTTTGCATAGTGTCTGC+TGG - chr3_1:41929272-41929291 Msa0357900:intron 40.0%
!! AGTTGGTGGAGTAGTTAAGT+TGG + chr3_1:41929595-41929614 None:intergenic 40.0%
GACTAATATTGTGAGACGGA+GGG - chr3_1:41929711-41929730 Msa0357900:intron 40.0%
TGTAAGAACATGGTCCTGTT+TGG + chr3_1:41929763-41929782 None:intergenic 40.0%
! CTTCAGTGTTATCGATTGCA+TGG - chr3_1:41929843-41929862 Msa0357900:intron 40.0%
!!! ATTGTTTTGACCACTTCTGC+TGG - chr3_1:41930269-41930288 Msa0357900:intron 40.0%
ATCCATAATACCAGCAGAAG+TGG + chr3_1:41930282-41930301 None:intergenic 40.0%
TTATGGATCATGAAGAGGCT+AGG - chr3_1:41930294-41930313 Msa0357900:intron 40.0%
!! GAGAAAGAATGTTGGTGGTA+AGG - chr3_1:41930316-41930335 Msa0357900:intron 40.0%
! GATTTCAGTTTTTCGCTTGC+TGG - chr3_1:41930385-41930404 Msa0357900:CDS 40.0%
!! TTTTCGCTTGCTGGATGTAA+TGG - chr3_1:41930394-41930413 Msa0357900:CDS 40.0%
CAATTGGACCCAAATTCATG+GGG + chr3_1:41930721-41930740 None:intergenic 40.0%
GACAATTGGACCCAAATTCA+TGG + chr3_1:41930723-41930742 None:intergenic 40.0%
CAGAGGAAATGAAATCGCGA+CGG + chr3_1:41928643-41928662 None:intergenic 45.0%
! GAAAGAGAAGAGAAAGGTGC+CGG + chr3_1:41928695-41928714 None:intergenic 45.0%
GGCACCTTTCTCTTCTCTTT+CGG - chr3_1:41928694-41928713 Msa0357900:three_prime_UTR 45.0%
!! CAAAACACTGACTCTCACCA+TGG + chr3_1:41928808-41928827 None:intergenic 45.0%
TTGACACCGACATCAAAACG+AGG + chr3_1:41929176-41929195 None:intergenic 45.0%
!!! TCGTTTTGATGTCGGTGTCA+AGG - chr3_1:41929175-41929194 Msa0357900:intron 45.0%
GTGTCAAGGAGATTGAAGGT+TGG - chr3_1:41929189-41929208 Msa0357900:intron 45.0%
TTCAACTGACCTGTCTGGAA+GGG + chr3_1:41929229-41929248 None:intergenic 45.0%
TTTCAACTGACCTGTCTGGA+AGG + chr3_1:41929230-41929249 None:intergenic 45.0%
CGACTAATATTGTGAGACGG+AGG - chr3_1:41929710-41929729 Msa0357900:intron 45.0%
GACCACTTCTGCTGGTATTA+TGG - chr3_1:41930277-41930296 Msa0357900:intron 45.0%
GAGGCTAGGAGAAAGAATGT+TGG - chr3_1:41930308-41930327 Msa0357900:intron 45.0%
GCTAGGAGAAAGAATGTTGG+TGG - chr3_1:41930311-41930330 Msa0357900:intron 45.0%
!! AATGTTGGTGGTAAGGTCCT+TGG - chr3_1:41930323-41930342 Msa0357900:intron 45.0%
TAGCCTAGTAGAAGAAGCCA+AGG + chr3_1:41930343-41930362 None:intergenic 45.0%
!! CAAAGAGCATTTGCAGATGC+AGG - chr3_1:41930748-41930767 Msa0357900:five_prime_UTR 45.0%
CAGAGGAAATGAAATCGCGA+CGG + chr3_1:41928643-41928662 None:intergenic 45.0%
! GAAAGAGAAGAGAAAGGTGC+CGG + chr3_1:41928695-41928714 None:intergenic 45.0%
GGCACCTTTCTCTTCTCTTT+CGG - chr3_1:41928694-41928713 Msa0357900:three_prime_UTR 45.0%
!! CAAAACACTGACTCTCACCA+TGG + chr3_1:41928808-41928827 None:intergenic 45.0%
TTGACACCGACATCAAAACG+AGG + chr3_1:41929176-41929195 None:intergenic 45.0%
!!! TCGTTTTGATGTCGGTGTCA+AGG - chr3_1:41929175-41929194 Msa0357900:intron 45.0%
GTGTCAAGGAGATTGAAGGT+TGG - chr3_1:41929189-41929208 Msa0357900:intron 45.0%
TTCAACTGACCTGTCTGGAA+GGG + chr3_1:41929229-41929248 None:intergenic 45.0%
TTTCAACTGACCTGTCTGGA+AGG + chr3_1:41929230-41929249 None:intergenic 45.0%
CGACTAATATTGTGAGACGG+AGG - chr3_1:41929710-41929729 Msa0357900:intron 45.0%
GACCACTTCTGCTGGTATTA+TGG - chr3_1:41930277-41930296 Msa0357900:intron 45.0%
GAGGCTAGGAGAAAGAATGT+TGG - chr3_1:41930308-41930327 Msa0357900:intron 45.0%
GCTAGGAGAAAGAATGTTGG+TGG - chr3_1:41930311-41930330 Msa0357900:intron 45.0%
!! AATGTTGGTGGTAAGGTCCT+TGG - chr3_1:41930323-41930342 Msa0357900:intron 45.0%
TAGCCTAGTAGAAGAAGCCA+AGG + chr3_1:41930343-41930362 None:intergenic 45.0%
!! TTATAATTATAAAAATGTAA+GGG + chr3_1:41930231-41930250 None:intergenic 5.0%
!! TTTATAATTATAAAAATGTA+AGG + chr3_1:41930232-41930251 None:intergenic 5.0%
!! TTATAATTATAAAAATGTAA+GGG + chr3_1:41930231-41930250 None:intergenic 5.0%
!! TTTATAATTATAAAAATGTA+AGG + chr3_1:41930232-41930251 None:intergenic 5.0%
!! GTCGGTGTCAAGGAGATTGA+AGG - chr3_1:41929185-41929204 Msa0357900:intron 50.0%
TAGACTTCTCCCTTCCAGAC+AGG - chr3_1:41929217-41929236 Msa0357900:intron 50.0%
GGTCCTTGGCTTCTTCTACT+AGG - chr3_1:41930337-41930356 Msa0357900:intron 50.0%
! ACTAGGCTAGTTCCTTGTCG+AGG - chr3_1:41930354-41930373 Msa0357900:intron 50.0%
! TCGCTTGCTGGATGTAATGG+TGG - chr3_1:41930397-41930416 Msa0357900:CDS 50.0%
!! GTCGGTGTCAAGGAGATTGA+AGG - chr3_1:41929185-41929204 Msa0357900:intron 50.0%
TAGACTTCTCCCTTCCAGAC+AGG - chr3_1:41929217-41929236 Msa0357900:intron 50.0%
GGTCCTTGGCTTCTTCTACT+AGG - chr3_1:41930337-41930356 Msa0357900:intron 50.0%
! ACTAGGCTAGTTCCTTGTCG+AGG - chr3_1:41930354-41930373 Msa0357900:intron 50.0%
! TCGCTTGCTGGATGTAATGG+TGG - chr3_1:41930397-41930416 Msa0357900:CDS 50.0%
CTTCGACGGCGACGTGTTTC+CGG - chr3_1:41928673-41928692 Msa0357900:three_prime_UTR 60.0%
CTTCGACGGCGACGTGTTTC+CGG - chr3_1:41928673-41928692 Msa0357900:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 41928553 41930770 41928553 ID=Msa0357900;Name=Msa0357900
chr3_1 mRNA 41928553 41930770 41928553 ID=Msa0357900-mRNA-1;Parent=Msa0357900;Name=Msa0357900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=168|0.66|0.75|1|0.66|0.5|4|412|112
chr3_1 exon 41928553 41929063 41928553 ID=Msa0357900-mRNA-1:exon:7265;Parent=Msa0357900-mRNA-1
chr3_1 exon 41930139 41930245 41930139 ID=Msa0357900-mRNA-1:exon:7264;Parent=Msa0357900-mRNA-1
chr3_1 exon 41930384 41930521 41930384 ID=Msa0357900-mRNA-1:exon:7263;Parent=Msa0357900-mRNA-1
chr3_1 exon 41930608 41930770 41930608 ID=Msa0357900-mRNA-1:exon:7262;Parent=Msa0357900-mRNA-1
chr3_1 five_prime_UTR 41930608 41930770 41930608 ID=Msa0357900-mRNA-1:five_prime_utr;Parent=Msa0357900-mRNA-1
chr3_1 five_prime_UTR 41930517 41930521 41930517 ID=Msa0357900-mRNA-1:five_prime_utr;Parent=Msa0357900-mRNA-1
chr3_1 CDS 41930384 41930516 41930384 ID=Msa0357900-mRNA-1:cds;Parent=Msa0357900-mRNA-1
chr3_1 CDS 41930139 41930245 41930139 ID=Msa0357900-mRNA-1:cds;Parent=Msa0357900-mRNA-1
chr3_1 CDS 41928965 41929063 41928965 ID=Msa0357900-mRNA-1:cds;Parent=Msa0357900-mRNA-1
chr3_1 three_prime_UTR 41928553 41928964 41928553 ID=Msa0357900-mRNA-1:three_prime_utr;Parent=Msa0357900-mRNA-1
Gene Sequence

>Msa0357900

ATGGTGAGAGTCAGTGTTTTGAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAAAGAGGAAAGCGTCAAGTTATGATTAGGCCTTCCTCTAAGGTCATCATCAAATTCCTCATCGTTATGCAAAAACACGGTTATATTGGAGAGTTTGAGTATGTTGATGATCACAGATCTGGGAAAATCGTTGTTGAATTGAATGGTAGGTTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATTTTGGATACATTGTTTTGACCACTTCTGCTGGTATTATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAGGTCCTTGGCTTCTTCTACTAG

Protein sequence

>Msa0357900

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*