Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587550 | XP_013454668.1 | 94.444 | 270 | 12 | 1 | 1 | 270 | 1 | 267 | 1.86e-168 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587550 | sp|Q9FUZ0|DEF1A_SOLLC | 67.672 | 232 | 66 | 2 | 37 | 268 | 53 | 275 | 3.61e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0356160 | Msa0587550 | 0.809263 | 2.063200e-50 | -8.615850e-47 |
| Msa0500610 | Msa0587550 | 0.807677 | 4.497029e-50 | -8.615850e-47 |
| Msa0500700 | Msa0587550 | 0.801046 | 1.083012e-48 | -8.615850e-47 |
| Msa0530720 | Msa0587550 | 0.866932 | 1.985423e-65 | -8.615850e-47 |
| Msa0587550 | Msa0627750 | 0.841847 | 3.705706e-58 | -8.615850e-47 |
| Msa0587550 | Msa0968470 | 0.806745 | 7.085194e-50 | -8.615850e-47 |
| Msa0587550 | Msa1208450 | 0.811938 | 5.450326e-51 | -8.615850e-47 |
| Msa0587550 | Msa1298390 | 0.805008 | 1.642121e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587550 | MtrunA17_Chr4g0003601 | 94.444 | 270 | 12 | 1 | 1 | 270 | 1 | 267 | 1.71e-172 | 476 |
| Msa0587550 | MtrunA17_Chr2g0332821 | 67.917 | 240 | 56 | 2 | 31 | 270 | 38 | 256 | 4.84e-110 | 318 |
| Msa0587550 | MtrunA17_Chr2g0332811 | 67.725 | 189 | 61 | 0 | 75 | 263 | 72 | 260 | 1.78e-88 | 264 |
| Msa0587550 | MtrunA17_Chr7g0228371 | 30.047 | 213 | 123 | 5 | 42 | 253 | 28 | 215 | 1.94e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587550 | AT1G15390.1 | 71.831 | 213 | 54 | 1 | 58 | 270 | 63 | 269 | 6.20e-111 | 321 |
| Msa0587550 | AT5G14660.1 | 34.320 | 169 | 94 | 3 | 85 | 253 | 84 | 235 | 1.19e-23 | 97.1 |
| Msa0587550 | AT5G14660.3 | 34.320 | 169 | 94 | 3 | 85 | 253 | 84 | 235 | 1.19e-23 | 97.1 |
| Msa0587550 | AT5G14660.2 | 34.320 | 169 | 94 | 3 | 85 | 253 | 84 | 235 | 1.19e-23 | 97.1 |
Find 91 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGATAAGGGTGGGTTTA+TGG | 0.136478 | 4_2:-9116026 | None:intergenic |
| TTGTTCTGTTTATTCTTCTA+TGG | 0.194919 | 4_2:-9116002 | None:intergenic |
| GCCCTCGGTAACGCATGTTT+TGG | 0.233533 | 4_2:+9119539 | Msa0587550:exon |
| CTCAGATTGGAGTTTCTTCT+AGG | 0.243478 | 4_2:+9116466 | Msa0587550:CDS |
| GAAAATGGTGATAGAGATAA+TGG | 0.253015 | 4_2:-9116162 | None:intergenic |
| GGCATAACTAATAAATTCTT+TGG | 0.259044 | 4_2:-9118319 | None:intergenic |
| CACTATGCAGATAATTGTTT+TGG | 0.265370 | 4_2:+9118290 | Msa0587550:intron |
| TTTCCATGATAAGTCGTTTC+AGG | 0.267339 | 4_2:+9119747 | Msa0587550:three_prime_UTR |
| CACCTTGACGTTGAAGTTAC+AGG | 0.267498 | 4_2:+9119340 | Msa0587550:CDS |
| GATGATAAGGTTAAAGTTAA+TGG | 0.268448 | 4_2:-9116195 | None:intergenic |
| GAGCTATGAGCACTTCCTTT+GGG | 0.276369 | 4_2:-9118341 | None:intergenic |
| GTTACCGAGGGCCAAGTTTC+GGG | 0.283852 | 4_2:-9119528 | None:intergenic |
| TCTACGGTTCTGAAAGTTCT+AGG | 0.285952 | 4_2:-9119475 | None:intergenic |
| CACGATAAGGGTGGGTTTAT+GGG | 0.287396 | 4_2:-9116025 | None:intergenic |
| TTCAGTGTTAAATATTATAC+TGG | 0.295687 | 4_2:+9119775 | Msa0587550:three_prime_UTR |
| AAATTATTGATGATATGATT+AGG | 0.316488 | 4_2:+9116406 | Msa0587550:CDS |
| ATTTCTAAAATATTTGAATC+TGG | 0.326035 | 4_2:-9119652 | None:intergenic |
| CACATTCATGTTGTAAAATC+CGG | 0.342414 | 4_2:-9119414 | None:intergenic |
| CCAATCAAAATAACTGCTTC+TGG | 0.342745 | 4_2:+9119382 | Msa0587550:CDS |
| TCACCAGCTTTAACAGTATC+AGG | 0.343078 | 4_2:-9116318 | None:intergenic |
| CGTTACCGAGGGCCAAGTTT+CGG | 0.344854 | 4_2:-9119529 | None:intergenic |
| AATTATTGATGATATGATTA+GGG | 0.344880 | 4_2:+9116407 | Msa0587550:CDS |
| TGAGCTATGAGCACTTCCTT+TGG | 0.361255 | 4_2:-9118342 | None:intergenic |
| ATTCTTCTATGGAACACAAT+AGG | 0.366896 | 4_2:-9115991 | None:intergenic |
| CTGCTTCTGGTTGGCAGGCC+CGG | 0.375678 | 4_2:+9119395 | Msa0587550:CDS |
| CATGGACCTGCCTCTTGCTC+AGG | 0.377726 | 4_2:+9119501 | Msa0587550:CDS |
| TATAATGCAATGACATAATT+CGG | 0.379896 | 4_2:-9119717 | None:intergenic |
| GGTTTAGCTGCTCCTCAGAT+TGG | 0.386408 | 4_2:+9116453 | Msa0587550:CDS |
| TTGAGAAGATGAAGATGATA+AGG | 0.388406 | 4_2:-9116208 | None:intergenic |
| TGAGCAGGTTCATGAAGAAC+AGG | 0.394698 | 4_2:-9116342 | None:intergenic |
| TTTGCTCGTACTCTTCAGCC+TGG | 0.404432 | 4_2:-9118514 | None:intergenic |
| TGACGTTGAAGTTACAGGTT+TGG | 0.412939 | 4_2:+9119345 | Msa0587550:CDS |
| TCTGTAAGAAAATCACGATA+AGG | 0.419805 | 4_2:-9116038 | None:intergenic |
| AAAATGGTGATAGAGATAAT+GGG | 0.423760 | 4_2:-9116161 | None:intergenic |
| ATGATATGATTAGGGTTATG+AGG | 0.426883 | 4_2:+9116415 | Msa0587550:CDS |
| GAAACGACTTATCATGGAAA+AGG | 0.427241 | 4_2:-9119744 | None:intergenic |
| CGTTGCTGCTGCCTCTGATA+AGG | 0.430902 | 4_2:+9119564 | Msa0587550:three_prime_UTR |
| GCTCAGGGATGCCCGAAACT+TGG | 0.436382 | 4_2:+9119517 | Msa0587550:CDS |
| TTGCCTGAAACGACTTATCA+TGG | 0.447929 | 4_2:-9119750 | None:intergenic |
| CTTGCATTAAAGCTGAGAAA+TGG | 0.453066 | 4_2:-9119841 | None:intergenic |
| AATAACTGCTTCTGGTTGGC+AGG | 0.461517 | 4_2:+9119390 | Msa0587550:CDS |
| GAACATACCAAAAGATCAAA+AGG | 0.463797 | 4_2:-9118375 | None:intergenic |
| TCAGATTGGAGTTTCTTCTA+GGG | 0.471837 | 4_2:+9116467 | Msa0587550:CDS |
| CTATGGAAGCTTTACACTTA+CGG | 0.473557 | 4_2:+9116082 | Msa0587550:CDS |
| GGCATCCCTGAGCAAGAGGC+AGG | 0.481807 | 4_2:-9119507 | None:intergenic |
| AACTCTATATGTTGATAAGA+TGG | 0.483415 | 4_2:+9119450 | Msa0587550:CDS |
| CTAGGATCAACTTCTTGAGC+AGG | 0.493700 | 4_2:-9116357 | None:intergenic |
| ATGAGGAAAGCTCCTGGTGT+TGG | 0.494343 | 4_2:+9116432 | Msa0587550:CDS |
| AAGGTTAAAGTTAATGGTGG+GGG | 0.496150 | 4_2:-9116189 | None:intergenic |
| GGCTGAAGAGTACGAGCAAA+AGG | 0.512028 | 4_2:+9118517 | Msa0587550:CDS |
| CTGTAAGAAAATCACGATAA+GGG | 0.516073 | 4_2:-9116037 | None:intergenic |
| TTGCCTGATACTGTTAAAGC+TGG | 0.517276 | 4_2:+9116315 | Msa0587550:CDS |
| TATTCAGAAAATGAAGGCTA+TGG | 0.517748 | 4_2:+9116065 | Msa0587550:exon |
| TTGCTCGTACTCTTCAGCCT+GGG | 0.529092 | 4_2:-9118513 | None:intergenic |
| ATAAGGTTAAAGTTAATGGT+GGG | 0.530548 | 4_2:-9116191 | None:intergenic |
| AAACGACTTATCATGGAAAA+GGG | 0.533289 | 4_2:-9119743 | None:intergenic |
| GATAAGGTTAAAGTTAATGG+TGG | 0.535661 | 4_2:-9116192 | None:intergenic |
| ATAATTCGGCATACAAAATG+AGG | 0.542585 | 4_2:-9119703 | None:intergenic |
| ACAACATGAATGTGATCACT+TGG | 0.545261 | 4_2:+9119423 | Msa0587550:CDS |
| CATGAATGTGATCACTTGGA+TGG | 0.545479 | 4_2:+9119427 | Msa0587550:CDS |
| ACATTCATGTTGTAAAATCC+GGG | 0.546437 | 4_2:-9119413 | None:intergenic |
| GAGAGATATTCAGAAAATGA+AGG | 0.546950 | 4_2:+9116059 | Msa0587550:exon |
| AGCTATGAGCACTTCCTTTG+GGG | 0.558890 | 4_2:-9118340 | None:intergenic |
| TCAAAATAACTGCTTCTGGT+TGG | 0.559785 | 4_2:+9119386 | Msa0587550:CDS |
| TTTCAGAACCGTAGAAAACA+TGG | 0.567140 | 4_2:+9119483 | Msa0587550:CDS |
| TAAGGTTAAAGTTAATGGTG+GGG | 0.574273 | 4_2:-9116190 | None:intergenic |
| TCTGATAAGGCTGTCAACAC+AGG | 0.580727 | 4_2:+9119577 | Msa0587550:three_prime_UTR |
| ATGGACCTGCCTCTTGCTCA+GGG | 0.581868 | 4_2:+9119502 | Msa0587550:CDS |
| TTCGGGCATCCCTGAGCAAG+AGG | 0.582488 | 4_2:-9119511 | None:intergenic |
| AAGAAAATCACGATAAGGGT+GGG | 0.586340 | 4_2:-9116033 | None:intergenic |
| CAAAATGAGGCAGATTTCAT+CGG | 0.592454 | 4_2:-9119690 | None:intergenic |
| GCTACTATAAGAACAAGGGC+AGG | 0.594187 | 4_2:+9116234 | Msa0587550:CDS |
| TGCAGGTGATCGTGAATCCC+AGG | 0.596578 | 4_2:+9118496 | Msa0587550:intron |
| TGATGGATTTAGAGCTGTGG+TGG | 0.598884 | 4_2:+9119312 | Msa0587550:CDS |
| AGGGTTATGAGGAAAGCTCC+TGG | 0.599633 | 4_2:+9116426 | Msa0587550:CDS |
| ATTTATTAGTTATGCCCCAA+AGG | 0.600743 | 4_2:+9118326 | Msa0587550:CDS |
| TTCTCAGACATTATCTCACT+AGG | 0.601515 | 4_2:-9116375 | None:intergenic |
| TAAGAAAATCACGATAAGGG+TGG | 0.602629 | 4_2:-9116034 | None:intergenic |
| GATGCCCGAAACTTGGCCCT+CGG | 0.604972 | 4_2:+9119524 | Msa0587550:CDS |
| AAACTGCTACTATAAGAACA+AGG | 0.612598 | 4_2:+9116229 | Msa0587550:CDS |
| TCCCAAAACATGCGTTACCG+AGG | 0.619446 | 4_2:-9119541 | None:intergenic |
| AACCTGTAACTTCAACGTCA+AGG | 0.623085 | 4_2:-9119342 | None:intergenic |
| CCCAAAACATGCGTTACCGA+GGG | 0.627876 | 4_2:-9119540 | None:intergenic |
| TGTTGATGGATTTAGAGCTG+TGG | 0.633917 | 4_2:+9119309 | Msa0587550:CDS |
| GTTACAGGTTTGGATCGCAA+TGG | 0.637881 | 4_2:+9119355 | Msa0587550:CDS |
| AACTGCTACTATAAGAACAA+GGG | 0.648022 | 4_2:+9116230 | Msa0587550:CDS |
| CTAGAAGAAACTCCAATCTG+AGG | 0.652902 | 4_2:-9116465 | None:intergenic |
| AAATGGTGATAGAGATAATG+GGG | 0.673193 | 4_2:-9116160 | None:intergenic |
| GGAGCAGCTAAACCAACACC+AGG | 0.676457 | 4_2:-9116444 | None:intergenic |
| TGTGTTGACAGCCTTATCAG+AGG | 0.687663 | 4_2:-9119575 | None:intergenic |
| GAGCAGGTTCATGAAGAACA+GGG | 0.696995 | 4_2:-9116341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTTTATCTTAAATTAT+TGG | - | chr4_2:9116844-9116863 | None:intergenic | 10.0% |
| !! | AATACATATATATAATTCAT+TGG | + | chr4_2:9118464-9118483 | Msa0587550:intron | 10.0% |
| !!! | AAATTATTGATGATATGATT+AGG | + | chr4_2:9116406-9116425 | Msa0587550:CDS | 15.0% |
| !!! | AATTATTGATGATATGATTA+GGG | + | chr4_2:9116407-9116426 | Msa0587550:CDS | 15.0% |
| !!! | TTTGAAATTTAGTTAATTTC+AGG | + | chr4_2:9117869-9117888 | Msa0587550:intron | 15.0% |
| !! | TCAAATTACTTTCAATTTAT+AGG | - | chr4_2:9118250-9118269 | None:intergenic | 15.0% |
| !! | AAATTTCTTAGATTAAAAGA+GGG | - | chr4_2:9118696-9118715 | None:intergenic | 15.0% |
| !! | GATTATTATTTATTGCTTAA+TGG | + | chr4_2:9119050-9119069 | Msa0587550:intron | 15.0% |
| !! | TATGAATTTATTAAAGTACA+GGG | - | chr4_2:9119144-9119163 | None:intergenic | 15.0% |
| !!! | ATTTCTAAAATATTTGAATC+TGG | - | chr4_2:9119655-9119674 | None:intergenic | 15.0% |
| !! | ATATGACTGATACATATAAA+AGG | - | chr4_2:9117002-9117021 | None:intergenic | 20.0% |
| !!! | TTTTTGATTTTGAAATTGCA+GGG | + | chr4_2:9117168-9117187 | Msa0587550:intron | 20.0% |
| !! | TATTTGAACTTCAATTCAAA+TGG | - | chr4_2:9118074-9118093 | None:intergenic | 20.0% |
| !! | AATTGAAAGTAATTTGAACT+TGG | + | chr4_2:9118253-9118272 | Msa0587550:intron | 20.0% |
| !!! | ATATTTACTTTTTGTCGTAA+AGG | + | chr4_2:9118430-9118449 | Msa0587550:intron | 20.0% |
| !! | CAAATTTCTTAGATTAAAAG+AGG | - | chr4_2:9118697-9118716 | None:intergenic | 20.0% |
| !! | ATTCCGTATTTCAAATTAAT+CGG | - | chr4_2:9118935-9118954 | None:intergenic | 20.0% |
| !!! | CTTTGAAACAATTGTTTATA+TGG | - | chr4_2:9119017-9119036 | None:intergenic | 20.0% |
| !! | TTGTATGTAAAAGAAAGTAA+TGG | - | chr4_2:9119086-9119105 | None:intergenic | 20.0% |
| !! | CTATGAATTTATTAAAGTAC+AGG | - | chr4_2:9119145-9119164 | None:intergenic | 20.0% |
| !! | ATAACAATTGAACATGTTAA+TGG | - | chr4_2:9119275-9119294 | None:intergenic | 20.0% |
| !! | TATAATGCAATGACATAATT+CGG | - | chr4_2:9119720-9119739 | None:intergenic | 20.0% |
| !! | TTCAGTGTTAAATATTATAC+TGG | + | chr4_2:9119775-9119794 | Msa0587550:three_prime_UTR | 20.0% |
| !! | TTATACTGGAAAAATTTCTT+AGG | + | chr4_2:9119789-9119808 | Msa0587550:three_prime_UTR | 20.0% |
| ! | TTGTTCTGTTTATTCTTCTA+TGG | - | chr4_2:9116005-9116024 | None:intergenic | 25.0% |
| ! | AAAATGGTGATAGAGATAAT+GGG | - | chr4_2:9116164-9116183 | None:intergenic | 25.0% |
| ! | ATAAGGTTAAAGTTAATGGT+GGG | - | chr4_2:9116194-9116213 | None:intergenic | 25.0% |
| ! | GATGATAAGGTTAAAGTTAA+TGG | - | chr4_2:9116198-9116217 | None:intergenic | 25.0% |
| ! | CAACTCGTATTTAAATACTA+CGG | + | chr4_2:9116660-9116679 | Msa0587550:intron | 25.0% |
| ! | GCTGTTATCATTTATTCATT+AGG | + | chr4_2:9117072-9117091 | Msa0587550:intron | 25.0% |
| ! | TATCATCATCATCATTATCA+TGG | + | chr4_2:9117109-9117128 | Msa0587550:intron | 25.0% |
| !!! | CTTTTTGATTTTGAAATTGC+AGG | + | chr4_2:9117167-9117186 | Msa0587550:intron | 25.0% |
| !!! | CGCTTAATTTATTTTAGTGT+TGG | - | chr4_2:9117373-9117392 | None:intergenic | 25.0% |
| !! | TAATGAGTTGGATGTAAATA+TGG | + | chr4_2:9117658-9117677 | Msa0587550:intron | 25.0% |
| !! | GATGTAAATATGGTTTTTGA+TGG | + | chr4_2:9117668-9117687 | Msa0587550:intron | 25.0% |
| !!! | TTGTACTAGTCTTTTTGAAT+AGG | + | chr4_2:9117758-9117777 | Msa0587550:intron | 25.0% |
| ! | AAGGACTAAATTGACTAAAT+TGG | + | chr4_2:9117926-9117945 | Msa0587550:intron | 25.0% |
| ! | TGATCTACTCAATATATTGA+AGG | + | chr4_2:9117949-9117968 | Msa0587550:intron | 25.0% |
| !! | TTATTCCTTTATTTGAAGTG+TGG | - | chr4_2:9118019-9118038 | None:intergenic | 25.0% |
| ! | CTTCAAATAAAGGAATAAGA+AGG | + | chr4_2:9118021-9118040 | Msa0587550:intron | 25.0% |
| ! | GAAAATTGAAAGTGAATTTG+CGG | + | chr4_2:9118187-9118206 | Msa0587550:intron | 25.0% |
| ! | GGCATAACTAATAAATTCTT+TGG | - | chr4_2:9118322-9118341 | None:intergenic | 25.0% |
| !!! | ATATCATGATTTGTCCTTTT+CGG | + | chr4_2:9118571-9118590 | Msa0587550:intron | 25.0% |
| ! | GAACAAGTAAATGAATAGTT+AGG | - | chr4_2:9118631-9118650 | None:intergenic | 25.0% |
| !! | TTCCCGATTAATTTGAAATA+CGG | + | chr4_2:9118929-9118948 | Msa0587550:intron | 25.0% |
| ! | TTCCGTATTTCAAATTAATC+GGG | - | chr4_2:9118934-9118953 | None:intergenic | 25.0% |
| ! | CATTGTATGAAATGTCAAAT+TGG | - | chr4_2:9118991-9119010 | None:intergenic | 25.0% |
| ! | TGAAACAATTGTTTATATGG+AGG | - | chr4_2:9119014-9119033 | None:intergenic | 25.0% |
| !! | CATAGTAGTTTGATAATTTC+CGG | + | chr4_2:9119160-9119179 | Msa0587550:intron | 25.0% |
| !! | AACTCTATATGTTGATAAGA+TGG | + | chr4_2:9119450-9119469 | Msa0587550:CDS | 25.0% |
| ATTCTTCTATGGAACACAAT+AGG | - | chr4_2:9115994-9116013 | None:intergenic | 30.0% | |
| CTGTAAGAAAATCACGATAA+GGG | - | chr4_2:9116040-9116059 | None:intergenic | 30.0% | |
| TCTGTAAGAAAATCACGATA+AGG | - | chr4_2:9116041-9116060 | None:intergenic | 30.0% | |
| GAGAGATATTCAGAAAATGA+AGG | + | chr4_2:9116059-9116078 | Msa0587550:exon | 30.0% | |
| TATTCAGAAAATGAAGGCTA+TGG | + | chr4_2:9116065-9116084 | Msa0587550:exon | 30.0% | |
| !!! | AAAGAGAGAGTTTTTGGTTA+TGG | - | chr4_2:9116124-9116143 | None:intergenic | 30.0% |
| ! | AAGTGTAAAGAGAGAGTTTT+TGG | - | chr4_2:9116130-9116149 | None:intergenic | 30.0% |
| AAATGGTGATAGAGATAATG+GGG | - | chr4_2:9116163-9116182 | None:intergenic | 30.0% | |
| GAAAATGGTGATAGAGATAA+TGG | - | chr4_2:9116165-9116184 | None:intergenic | 30.0% | |
| TAAGGTTAAAGTTAATGGTG+GGG | - | chr4_2:9116193-9116212 | None:intergenic | 30.0% | |
| GATAAGGTTAAAGTTAATGG+TGG | - | chr4_2:9116195-9116214 | None:intergenic | 30.0% | |
| TTGAGAAGATGAAGATGATA+AGG | - | chr4_2:9116211-9116230 | None:intergenic | 30.0% | |
| AAACTGCTACTATAAGAACA+AGG | + | chr4_2:9116229-9116248 | Msa0587550:CDS | 30.0% | |
| AACTGCTACTATAAGAACAA+GGG | + | chr4_2:9116230-9116249 | Msa0587550:CDS | 30.0% | |
| ATGATATGATTAGGGTTATG+AGG | + | chr4_2:9116415-9116434 | Msa0587550:CDS | 30.0% | |
| ATTCTTTCGCTATCACTAAA+GGG | - | chr4_2:9116623-9116642 | None:intergenic | 30.0% | |
| AATTCTTTCGCTATCACTAA+AGG | - | chr4_2:9116624-9116643 | None:intergenic | 30.0% | |
| ! | TTAGTGATAGCGAAAGAATT+AGG | + | chr4_2:9116624-9116643 | Msa0587550:intron | 30.0% |
| ! | TAGTGATAGCGAAAGAATTA+GGG | + | chr4_2:9116625-9116644 | Msa0587550:intron | 30.0% |
| GAAGGAGTAATATTGTAATC+TGG | - | chr4_2:9116687-9116706 | None:intergenic | 30.0% | |
| GACAAACACAAATTTGTGTA+TGG | - | chr4_2:9116765-9116784 | None:intergenic | 30.0% | |
| TGATTAAACGTAACCATATG+AGG | + | chr4_2:9116860-9116879 | Msa0587550:intron | 30.0% | |
| GATTAAACGTAACCATATGA+GGG | + | chr4_2:9116861-9116880 | Msa0587550:intron | 30.0% | |
| ATTAAACGTAACCATATGAG+GGG | + | chr4_2:9116862-9116881 | Msa0587550:intron | 30.0% | |
| CCATATGAAAAAGACTAGTA+TGG | - | chr4_2:9117261-9117280 | None:intergenic | 30.0% | |
| !!! | CCATACTAGTCTTTTTCATA+TGG | + | chr4_2:9117258-9117277 | Msa0587550:intron | 30.0% |
| ! | TCTACCATCTTTTCAACTAT+AGG | - | chr4_2:9117488-9117507 | None:intergenic | 30.0% |
| TCAGAGACGAGATAATTTAA+GGG | - | chr4_2:9117797-9117816 | None:intergenic | 30.0% | |
| TTCAGAGACGAGATAATTTA+AGG | - | chr4_2:9117798-9117817 | None:intergenic | 30.0% | |
| TGAGAATGCTCTACAATTTA+AGG | + | chr4_2:9117907-9117926 | Msa0587550:intron | 30.0% | |
| TCAATATATTGAAGGAGCTA+AGG | + | chr4_2:9117957-9117976 | Msa0587550:intron | 30.0% | |
| TGTTACCACACTTCAAATAA+AGG | + | chr4_2:9118011-9118030 | Msa0587550:intron | 30.0% | |
| GCTTATGACAACTATAATGT+TGG | + | chr4_2:9118165-9118184 | Msa0587550:intron | 30.0% | |
| ! | CACTATGCAGATAATTGTTT+TGG | + | chr4_2:9118290-9118309 | Msa0587550:intron | 30.0% |
| ATTTATTAGTTATGCCCCAA+AGG | + | chr4_2:9118326-9118345 | Msa0587550:CDS | 30.0% | |
| ! | TAGACATCCTTTTGATCTTT+TGG | + | chr4_2:9118368-9118387 | Msa0587550:CDS | 30.0% |
| GAACATACCAAAAGATCAAA+AGG | - | chr4_2:9118378-9118397 | None:intergenic | 30.0% | |
| !! | TACTTTTTGTCGTAAAGGTT+CGG | + | chr4_2:9118435-9118454 | Msa0587550:intron | 30.0% |
| TTACTTGTGTTGTCTAATAG+CGG | + | chr4_2:9118738-9118757 | Msa0587550:intron | 30.0% | |
| CAAATTAATCGGGAAAAAGT+GGG | - | chr4_2:9118924-9118943 | None:intergenic | 30.0% | |
| TCAAATTAATCGGGAAAAAG+TGG | - | chr4_2:9118925-9118944 | None:intergenic | 30.0% | |
| AGCATAAGCAGATTAATTTC+CGG | - | chr4_2:9119182-9119201 | None:intergenic | 30.0% | |
| TTAATCTGCTTATGCTTAGA+TGG | + | chr4_2:9119186-9119205 | Msa0587550:intron | 30.0% | |
| !! | ATAACATTTTGCAGTGTTGA+TGG | + | chr4_2:9119295-9119314 | Msa0587550:intron | 30.0% |
| ACATTCATGTTGTAAAATCC+GGG | - | chr4_2:9119416-9119435 | None:intergenic | 30.0% | |
| CACATTCATGTTGTAAAATC+CGG | - | chr4_2:9119417-9119436 | None:intergenic | 30.0% | |
| ! | TTGAATCTGGTCTCAATTTT+AGG | - | chr4_2:9119642-9119661 | None:intergenic | 30.0% |
| ATAATTCGGCATACAAAATG+AGG | - | chr4_2:9119706-9119725 | None:intergenic | 30.0% | |
| AAACGACTTATCATGGAAAA+GGG | - | chr4_2:9119746-9119765 | None:intergenic | 30.0% | |
| AAAAATTTCTTAGGTCTGCA+AGG | + | chr4_2:9119798-9119817 | Msa0587550:three_prime_UTR | 30.0% | |
| AAGAAAATCACGATAAGGGT+GGG | - | chr4_2:9116036-9116055 | None:intergenic | 35.0% | |
| TAAGAAAATCACGATAAGGG+TGG | - | chr4_2:9116037-9116056 | None:intergenic | 35.0% | |
| CTATGGAAGCTTTACACTTA+CGG | + | chr4_2:9116082-9116101 | Msa0587550:CDS | 35.0% | |
| !!! | GAGTTTTTGGTTATGGATAG+TGG | - | chr4_2:9116117-9116136 | None:intergenic | 35.0% |
| AAGGTTAAAGTTAATGGTGG+GGG | - | chr4_2:9116192-9116211 | None:intergenic | 35.0% | |
| !!! | ACAAGGGCAGGTTTTTTTTT+TGG | + | chr4_2:9116246-9116265 | Msa0587550:CDS | 35.0% |
| TTCTCAGACATTATCTCACT+AGG | - | chr4_2:9116378-9116397 | None:intergenic | 35.0% | |
| TCAGATTGGAGTTTCTTCTA+GGG | + | chr4_2:9116467-9116486 | Msa0587550:CDS | 35.0% | |
| CAAATTTGTGTATGGCTCAT+TGG | - | chr4_2:9116757-9116776 | None:intergenic | 35.0% | |
| ATCATGTCTAGTGTCTATGT+CGG | - | chr4_2:9116797-9116816 | None:intergenic | 35.0% | |
| ATAGACACTAGACATGATTC+TGG | + | chr4_2:9116799-9116818 | Msa0587550:intron | 35.0% | |
| TGTTGTCATGTGACTGAAAA+TGG | + | chr4_2:9116909-9116928 | Msa0587550:intron | 35.0% | |
| GTTGTCATGTGACTGAAAAT+GGG | + | chr4_2:9116910-9116929 | Msa0587550:intron | 35.0% | |
| GATACATATAAAAGGCAAGC+TGG | - | chr4_2:9116994-9117013 | None:intergenic | 35.0% | |
| GTATCAGTCATATGTATGAG+TGG | + | chr4_2:9117009-9117028 | Msa0587550:intron | 35.0% | |
| CATATGTATGAGTGGTATGT+CGG | + | chr4_2:9117017-9117036 | Msa0587550:intron | 35.0% | |
| ! | AGCCGAAGGTAAAATTTTAC+CGG | + | chr4_2:9117293-9117312 | Msa0587550:intron | 35.0% |
| ! | GTCCGGTAAAATTTTACCTT+CGG | - | chr4_2:9117298-9117317 | None:intergenic | 35.0% |
| GTTGTACGGACATAGAATAT+TGG | + | chr4_2:9117336-9117355 | Msa0587550:intron | 35.0% | |
| ACAACATTAGAGAGAGAGTT+GGG | + | chr4_2:9117456-9117475 | Msa0587550:intron | 35.0% | |
| AGCACCTATAGTTGAAAAGA+TGG | + | chr4_2:9117481-9117500 | Msa0587550:intron | 35.0% | |
| AGATGGTAGAAACTAGACTT+AGG | + | chr4_2:9117498-9117517 | Msa0587550:intron | 35.0% | |
| AAACTAGACTTAGGTGGTTT+AGG | + | chr4_2:9117507-9117526 | Msa0587550:intron | 35.0% | |
| AACTTGTGGATTCTGTAGTT+AGG | + | chr4_2:9117543-9117562 | Msa0587550:intron | 35.0% | |
| !!! | GGTTCTCTTATGCTTTTTCT+AGG | - | chr4_2:9117617-9117636 | None:intergenic | 35.0% |
| CATAAGAGAACCTATCAAGA+AGG | + | chr4_2:9117625-9117644 | Msa0587550:intron | 35.0% | |
| ATCTCTAGATCCTTCTTGAT+AGG | - | chr4_2:9117638-9117657 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | + | chr4_2:9117646-9117665 | Msa0587550:intron | 35.0% | |
| ! | TGGTTTTTGATGGAGCAATA+CGG | + | chr4_2:9117678-9117697 | Msa0587550:intron | 35.0% |
| ATTGAAGGAGCTAAGGTAAT+TGG | + | chr4_2:9117964-9117983 | Msa0587550:intron | 35.0% | |
| TAAGAAGGAAACGAAGCAAA+AGG | + | chr4_2:9118036-9118055 | Msa0587550:intron | 35.0% | |
| AAGAAGGAAACGAAGCAAAA+GGG | + | chr4_2:9118037-9118056 | Msa0587550:intron | 35.0% | |
| ! | ATTTTGTTAACGCTGAGAAG+TGG | + | chr4_2:9118110-9118129 | Msa0587550:intron | 35.0% |
| ! | TTTTGTTAACGCTGAGAAGT+GGG | + | chr4_2:9118111-9118130 | Msa0587550:intron | 35.0% |
| CAAACACCCTTCAAAAAACA+GGG | - | chr4_2:9118547-9118566 | None:intergenic | 35.0% | |
| TCAAACACCCTTCAAAAAAC+AGG | - | chr4_2:9118548-9118567 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGAAGGGTGTTTG+AGG | + | chr4_2:9118547-9118566 | Msa0587550:CDS | 35.0% |
| ACAAAGATGGAAAACCGAAA+AGG | - | chr4_2:9118588-9118607 | None:intergenic | 35.0% | |
| AGTGTGGTAAGAAACAAAGA+TGG | - | chr4_2:9118601-9118620 | None:intergenic | 35.0% | |
| ATAGTTAGGCAAATCAAGTG+TGG | - | chr4_2:9118617-9118636 | None:intergenic | 35.0% | |
| GAAATGGTCAATAGCCTATT+GGG | - | chr4_2:9118853-9118872 | None:intergenic | 35.0% | |
| TGAAATGGTCAATAGCCTAT+TGG | - | chr4_2:9118854-9118873 | None:intergenic | 35.0% | |
| ATTGACCATTTCACGACTAA+TGG | + | chr4_2:9118861-9118880 | Msa0587550:intron | 35.0% | |
| TTTAGCCATTAGTCGTGAAA+TGG | - | chr4_2:9118869-9118888 | None:intergenic | 35.0% | |
| !!! | CCAGAAGCAGTTATTTTGAT+TGG | - | chr4_2:9119385-9119404 | None:intergenic | 35.0% |
| CCAATCAAAATAACTGCTTC+TGG | + | chr4_2:9119382-9119401 | Msa0587550:CDS | 35.0% | |
| TCAAAATAACTGCTTCTGGT+TGG | + | chr4_2:9119386-9119405 | Msa0587550:CDS | 35.0% | |
| ACAACATGAATGTGATCACT+TGG | + | chr4_2:9119423-9119442 | Msa0587550:CDS | 35.0% | |
| TTTCAGAACCGTAGAAAACA+TGG | + | chr4_2:9119483-9119502 | Msa0587550:CDS | 35.0% | |
| CAAAATGAGGCAGATTTCAT+CGG | - | chr4_2:9119693-9119712 | None:intergenic | 35.0% | |
| GAAACGACTTATCATGGAAA+AGG | - | chr4_2:9119747-9119766 | None:intergenic | 35.0% | |
| TTTCCATGATAAGTCGTTTC+AGG | + | chr4_2:9119747-9119766 | Msa0587550:three_prime_UTR | 35.0% | |
| CTTGCATTAAAGCTGAGAAA+TGG | - | chr4_2:9119844-9119863 | None:intergenic | 35.0% | |
| !!! | AATGGTGGGGGTTTTGAAAA+TGG | - | chr4_2:9116180-9116199 | None:intergenic | 40.0% |
| TTGCCTGATACTGTTAAAGC+TGG | + | chr4_2:9116315-9116334 | Msa0587550:CDS | 40.0% | |
| ! | TCACCAGCTTTAACAGTATC+AGG | - | chr4_2:9116321-9116340 | None:intergenic | 40.0% |
| CTAGAAGAAACTCCAATCTG+AGG | - | chr4_2:9116468-9116487 | None:intergenic | 40.0% | |
| CTCAGATTGGAGTTTCTTCT+AGG | + | chr4_2:9116466-9116485 | Msa0587550:CDS | 40.0% | |
| !! | GCTCATTGGTATTGACAAGT+GGG | - | chr4_2:9116743-9116762 | None:intergenic | 40.0% |
| !! | TCGCTAGTCTTACAATTGTC+CGG | - | chr4_2:9117315-9117334 | None:intergenic | 40.0% |
| GTAAGACTAGCGATGTTGTA+CGG | + | chr4_2:9117322-9117341 | Msa0587550:intron | 40.0% | |
| TAAGCGTAGCAGAGTTTAAG+AGG | + | chr4_2:9117387-9117406 | Msa0587550:intron | 40.0% | |
| GACAACATTAGAGAGAGAGT+TGG | + | chr4_2:9117455-9117474 | Msa0587550:intron | 40.0% | |
| CAACATTAGAGAGAGAGTTG+GGG | + | chr4_2:9117457-9117476 | Msa0587550:intron | 40.0% | |
| TGGTAGAAACTAGACTTAGG+TGG | + | chr4_2:9117501-9117520 | Msa0587550:intron | 40.0% | |
| GCATGTAGAGAGAAAACTTG+TGG | + | chr4_2:9117529-9117548 | Msa0587550:intron | 40.0% | |
| AGTTAGGAGAGTAGATCAGA+TGG | + | chr4_2:9117559-9117578 | Msa0587550:intron | 40.0% | |
| AGAAGGAAACGAAGCAAAAG+GGG | + | chr4_2:9118038-9118057 | Msa0587550:intron | 40.0% | |
| !! | TTCATTGGTTCTCTTGTTGC+AGG | + | chr4_2:9118479-9118498 | Msa0587550:intron | 40.0% |
| ! | TTGTTATTGTTCCGCCATAC+AGG | + | chr4_2:9118797-9118816 | Msa0587550:intron | 40.0% |
| TCAGTGTTGTCAATCCTGTA+TGG | - | chr4_2:9118814-9118833 | None:intergenic | 40.0% | |
| GAAAAAGTGGGATACGATGT+TGG | - | chr4_2:9118912-9118931 | None:intergenic | 40.0% | |
| TTAATGGTGCCCTAGATTGA+AGG | - | chr4_2:9119259-9119278 | None:intergenic | 40.0% | |
| !! | TGTTGATGGATTTAGAGCTG+TGG | + | chr4_2:9119309-9119328 | Msa0587550:CDS | 40.0% |
| AACCTGTAACTTCAACGTCA+AGG | - | chr4_2:9119345-9119364 | None:intergenic | 40.0% | |
| TGACGTTGAAGTTACAGGTT+TGG | + | chr4_2:9119345-9119364 | Msa0587550:CDS | 40.0% | |
| CATGAATGTGATCACTTGGA+TGG | + | chr4_2:9119427-9119446 | Msa0587550:CDS | 40.0% | |
| !! | TCTACGGTTCTGAAAGTTCT+AGG | - | chr4_2:9119478-9119497 | None:intergenic | 40.0% |
| TTGCCTGAAACGACTTATCA+TGG | - | chr4_2:9119753-9119772 | None:intergenic | 40.0% | |
| ! | CACGATAAGGGTGGGTTTAT+GGG | - | chr4_2:9116028-9116047 | None:intergenic | 45.0% |
| ! | TCACGATAAGGGTGGGTTTA+TGG | - | chr4_2:9116029-9116048 | None:intergenic | 45.0% |
| GCTACTATAAGAACAAGGGC+AGG | + | chr4_2:9116234-9116253 | Msa0587550:CDS | 45.0% | |
| GAGCAGGTTCATGAAGAACA+GGG | - | chr4_2:9116344-9116363 | None:intergenic | 45.0% | |
| TGAGCAGGTTCATGAAGAAC+AGG | - | chr4_2:9116345-9116364 | None:intergenic | 45.0% | |
| CTAGGATCAACTTCTTGAGC+AGG | - | chr4_2:9116360-9116379 | None:intergenic | 45.0% | |
| TACTCGATAGACTGAGACGT+AGG | - | chr4_2:9116591-9116610 | None:intergenic | 45.0% | |
| GAGCAAGACTACAACAAGGA+AGG | - | chr4_2:9116705-9116724 | None:intergenic | 45.0% | |
| !! | GGCTCATTGGTATTGACAAG+TGG | - | chr4_2:9116744-9116763 | None:intergenic | 45.0% |
| AACCATATGAGGGGTAACCT+TGG | + | chr4_2:9116871-9116890 | Msa0587550:intron | 45.0% | |
| CAACTTTATCAGTTGCGCCA+AGG | - | chr4_2:9116891-9116910 | None:intergenic | 45.0% | |
| ! | CTGAAAATGGGTTCAAGTCC+TGG | + | chr4_2:9116922-9116941 | Msa0587550:intron | 45.0% |
| AGCCTCCTGCGTAAAAAACA+GGG | + | chr4_2:9116949-9116968 | Msa0587550:intron | 45.0% | |
| !!! | TACCCTGTTTTTTACGCAGG+AGG | - | chr4_2:9116954-9116973 | None:intergenic | 45.0% |
| !!! | CCTTACCCTGTTTTTTACGC+AGG | - | chr4_2:9116957-9116976 | None:intergenic | 45.0% |
| CCTGCGTAAAAAACAGGGTA+AGG | + | chr4_2:9116954-9116973 | Msa0587550:intron | 45.0% | |
| AAGAGGTTGCGTTGAATGTG+TGG | + | chr4_2:9117404-9117423 | Msa0587550:intron | 45.0% | |
| TAGGAGAGTAGATCAGATGG+AGG | + | chr4_2:9117562-9117581 | Msa0587550:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | + | chr4_2:9117563-9117582 | Msa0587550:intron | 45.0% | |
| GAGGGGAGTTAAATCACTAG+AGG | + | chr4_2:9117581-9117600 | Msa0587550:intron | 45.0% | |
| ! | AAGCCTTATCCCATTGACTG+GGG | - | chr4_2:9117727-9117746 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCATTGACT+GGG | - | chr4_2:9117728-9117747 | None:intergenic | 45.0% |
| AGCTATGAGCACTTCCTTTG+GGG | - | chr4_2:9118343-9118362 | None:intergenic | 45.0% | |
| GAGCTATGAGCACTTCCTTT+GGG | - | chr4_2:9118344-9118363 | None:intergenic | 45.0% | |
| TGAGCTATGAGCACTTCCTT+TGG | - | chr4_2:9118345-9118364 | None:intergenic | 45.0% | |
| !!! | AGGACTGCCCTGTTTTTTGA+AGG | + | chr4_2:9118537-9118556 | Msa0587550:CDS | 45.0% |
| !!! | GGACTGCCCTGTTTTTTGAA+GGG | + | chr4_2:9118538-9118557 | Msa0587550:CDS | 45.0% |
| GTGTTGTCAATCCTGTATGG+CGG | - | chr4_2:9118811-9118830 | None:intergenic | 45.0% | |
| TCAATAGCCTATTGGGAGTC+GGG | - | chr4_2:9118846-9118865 | None:intergenic | 45.0% | |
| GTCAATAGCCTATTGGGAGT+CGG | - | chr4_2:9118847-9118866 | None:intergenic | 45.0% | |
| CTCAACTCACTGATAGCTCT+TGG | + | chr4_2:9119111-9119130 | Msa0587550:intron | 45.0% | |
| ACTCACTGATAGCTCTTGGT+TGG | + | chr4_2:9119115-9119134 | Msa0587550:intron | 45.0% | |
| CGTGAGAAAAAACGTGTACG+CGG | + | chr4_2:9119232-9119251 | Msa0587550:intron | 45.0% | |
| !! | TGATGGATTTAGAGCTGTGG+TGG | + | chr4_2:9119312-9119331 | Msa0587550:CDS | 45.0% |
| CACCTTGACGTTGAAGTTAC+AGG | + | chr4_2:9119340-9119359 | Msa0587550:CDS | 45.0% | |
| GTTACAGGTTTGGATCGCAA+TGG | + | chr4_2:9119355-9119374 | Msa0587550:CDS | 45.0% | |
| ! | AATAACTGCTTCTGGTTGGC+AGG | + | chr4_2:9119390-9119409 | Msa0587550:CDS | 45.0% |
| ! | AGGCAGGTCCATGTTTTCTA+CGG | - | chr4_2:9119494-9119513 | None:intergenic | 45.0% |
| ! | TGTGTTGACAGCCTTATCAG+AGG | - | chr4_2:9119578-9119597 | None:intergenic | 45.0% |
| TCTGATAAGGCTGTCAACAC+AGG | + | chr4_2:9119577-9119596 | Msa0587550:three_prime_UTR | 45.0% | |
| AGGGTTATGAGGAAAGCTCC+TGG | + | chr4_2:9116426-9116445 | Msa0587550:CDS | 50.0% | |
| ATGAGGAAAGCTCCTGGTGT+TGG | + | chr4_2:9116432-9116451 | Msa0587550:CDS | 50.0% | |
| GGTTTAGCTGCTCCTCAGAT+TGG | + | chr4_2:9116453-9116472 | Msa0587550:CDS | 50.0% | |
| AGCGGAGCAAGACTACAACA+AGG | - | chr4_2:9116709-9116728 | None:intergenic | 50.0% | |
| CAGCCTCCTGCGTAAAAAAC+AGG | + | chr4_2:9116948-9116967 | Msa0587550:intron | 50.0% | |
| GCACTGCAGCTTCAGATTGA+AGG | - | chr4_2:9117048-9117067 | None:intergenic | 50.0% | |
| GTGGCAAGACTAGACGTGAT+AGG | + | chr4_2:9117423-9117442 | Msa0587550:intron | 50.0% | |
| GGAGAGTAGATCAGATGGAG+GGG | + | chr4_2:9117564-9117583 | Msa0587550:intron | 50.0% | |
| ATGTAGCCAACCCCAGTCAA+TGG | + | chr4_2:9117714-9117733 | Msa0587550:intron | 50.0% | |
| TGTAGCCAACCCCAGTCAAT+GGG | + | chr4_2:9117715-9117734 | Msa0587550:intron | 50.0% | |
| ! | CTTATCCCATTGACTGGGGT+TGG | - | chr4_2:9117723-9117742 | None:intergenic | 50.0% |
| CAACCCCAGTCAATGGGATA+AGG | + | chr4_2:9117721-9117740 | Msa0587550:intron | 50.0% | |
| ! | CCAAGCCTTATCCCATTGAC+TGG | - | chr4_2:9117729-9117748 | None:intergenic | 50.0% |
| CCAGTCAATGGGATAAGGCT+TGG | + | chr4_2:9117726-9117745 | Msa0587550:intron | 50.0% | |
| TTGCTCGTACTCTTCAGCCT+GGG | - | chr4_2:9118516-9118535 | None:intergenic | 50.0% | |
| TTTGCTCGTACTCTTCAGCC+TGG | - | chr4_2:9118517-9118536 | None:intergenic | 50.0% | |
| ! | GGCTGAAGAGTACGAGCAAA+AGG | + | chr4_2:9118517-9118536 | Msa0587550:CDS | 50.0% |
| TTTACCTCCCGACTCCCAAT+AGG | + | chr4_2:9118836-9118855 | Msa0587550:intron | 50.0% | |
| TGTACGCGGTCCTTCAATCT+AGG | + | chr4_2:9119246-9119265 | Msa0587550:intron | 50.0% | |
| GTACGCGGTCCTTCAATCTA+GGG | + | chr4_2:9119247-9119266 | Msa0587550:intron | 50.0% | |
| CCCAAAACATGCGTTACCGA+GGG | - | chr4_2:9119543-9119562 | None:intergenic | 50.0% | |
| ! | CCCTCGGTAACGCATGTTTT+GGG | + | chr4_2:9119540-9119559 | Msa0587550:exon | 50.0% |
| TCCCAAAACATGCGTTACCG+AGG | - | chr4_2:9119544-9119563 | None:intergenic | 50.0% | |
| GGAGCAGCTAAACCAACACC+AGG | - | chr4_2:9116447-9116466 | None:intergenic | 55.0% | |
| TCTTGCTCCGCTCGTTGTCT+TGG | + | chr4_2:9116717-9116736 | Msa0587550:intron | 55.0% | |
| AAGTGGGCCAAGACAACGAG+CGG | - | chr4_2:9116727-9116746 | None:intergenic | 55.0% | |
| CGCCAAGGTTACCCCTCATA+TGG | - | chr4_2:9116876-9116895 | None:intergenic | 55.0% | |
| ! | TTACGCAGGAGGCTGTTTCC+AGG | - | chr4_2:9116943-9116962 | None:intergenic | 55.0% |
| !! | GGAAGTACTGCTCAAGCCGA+AGG | + | chr4_2:9117279-9117298 | Msa0587550:intron | 55.0% |
| TGCAGGTGATCGTGAATCCC+AGG | + | chr4_2:9118496-9118515 | Msa0587550:intron | 55.0% | |
| ATAGCCTATTGGGAGTCGGG+AGG | - | chr4_2:9118843-9118862 | None:intergenic | 55.0% | |
| ATGGACCTGCCTCTTGCTCA+GGG | + | chr4_2:9119502-9119521 | Msa0587550:CDS | 55.0% | |
| GTTACCGAGGGCCAAGTTTC+GGG | - | chr4_2:9119531-9119550 | None:intergenic | 55.0% | |
| CGTTACCGAGGGCCAAGTTT+CGG | - | chr4_2:9119532-9119551 | None:intergenic | 55.0% | |
| ! | GCCCTCGGTAACGCATGTTT+TGG | + | chr4_2:9119539-9119558 | Msa0587550:exon | 55.0% |
| CGTTGCTGCTGCCTCTGATA+AGG | + | chr4_2:9119564-9119583 | Msa0587550:three_prime_UTR | 55.0% | |
| CATGGACCTGCCTCTTGCTC+AGG | + | chr4_2:9119501-9119520 | Msa0587550:CDS | 60.0% | |
| TTCGGGCATCCCTGAGCAAG+AGG | - | chr4_2:9119514-9119533 | None:intergenic | 60.0% | |
| GCTCAGGGATGCCCGAAACT+TGG | + | chr4_2:9119517-9119536 | Msa0587550:CDS | 60.0% | |
| GATGCCCGAAACTTGGCCCT+CGG | + | chr4_2:9119524-9119543 | Msa0587550:CDS | 60.0% | |
| ! | CTGCTTCTGGTTGGCAGGCC+CGG | + | chr4_2:9119395-9119414 | Msa0587550:CDS | 65.0% |
| GGCATCCCTGAGCAAGAGGC+AGG | - | chr4_2:9119510-9119529 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 9115980 | 9119890 | 9115980 | ID=Msa0587550;Name=Msa0587550 |
| chr4_2 | mRNA | 9115980 | 9119890 | 9115980 | ID=Msa0587550-mRNA-1;Parent=Msa0587550;Name=Msa0587550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|1|1|1|1|1|4|341|270 |
| chr4_2 | exon | 9115980 | 9116488 | 9115980 | ID=Msa0587550-mRNA-1:exon:2510;Parent=Msa0587550-mRNA-1 |
| chr4_2 | exon | 9118300 | 9118389 | 9118300 | ID=Msa0587550-mRNA-1:exon:2511;Parent=Msa0587550-mRNA-1 |
| chr4_2 | exon | 9118501 | 9118568 | 9118501 | ID=Msa0587550-mRNA-1:exon:2512;Parent=Msa0587550-mRNA-1 |
| chr4_2 | exon | 9119309 | 9119890 | 9119309 | ID=Msa0587550-mRNA-1:exon:2513;Parent=Msa0587550-mRNA-1 |
| chr4_2 | five_prime_UTR | 9115980 | 9116074 | 9115980 | ID=Msa0587550-mRNA-1:five_prime_utr;Parent=Msa0587550-mRNA-1 |
| chr4_2 | CDS | 9116075 | 9116488 | 9116075 | ID=Msa0587550-mRNA-1:cds;Parent=Msa0587550-mRNA-1 |
| chr4_2 | CDS | 9118300 | 9118389 | 9118300 | ID=Msa0587550-mRNA-1:cds;Parent=Msa0587550-mRNA-1 |
| chr4_2 | CDS | 9118501 | 9118568 | 9118501 | ID=Msa0587550-mRNA-1:cds;Parent=Msa0587550-mRNA-1 |
| chr4_2 | CDS | 9119309 | 9119549 | 9119309 | ID=Msa0587550-mRNA-1:cds;Parent=Msa0587550-mRNA-1 |
| chr4_2 | three_prime_UTR | 9119550 | 9119890 | 9119550 | ID=Msa0587550-mRNA-1:three_prime_utr;Parent=Msa0587550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
