AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500610 MtrunA17_Chr3g0133851 96.414 251 9 0 1 251 1 251 0.0 503
Msa0500610 MtrunA17_Chr8g0377831 40.254 236 111 7 20 240 16 236 4.68e-47 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500610 AT4G33350.1 64.179 268 75 5 1 250 1 265 6.92e-119 340
Msa0500610 AT4G33350.2 57.463 268 67 5 1 250 1 239 6.02e-101 294
Msa0500610 AT3G23710.1 42.211 199 101 6 52 240 109 303 3.63e-44 151
Msa0500610 AT3G23710.2 42.143 140 77 2 52 187 109 248 2.17e-30 114

Find 87 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATGTTTATTTCAGTTTA+AGG 0.126504 3_4:-41113058 Msa0500610:three_prime_UTR
TTCATGCAGATACTGCTTTA+AGG 0.144225 3_4:-41113115 Msa0500610:intron
TTGCAGGTGTTTGAACTATT+TGG 0.187405 3_4:-41112855 Msa0500610:three_prime_UTR
ACTACCTGTTCAAGAGTTAT+TGG 0.204138 3_4:+41116128 None:intergenic
TACCAGATCCACTTCAAATA+AGG 0.261652 3_4:-41115471 Msa0500610:CDS
TCAACATATACAAGAAATTA+AGG 0.262989 3_4:-41113307 Msa0500610:CDS
AATAAGTTTAATTACTTTGC+AGG 0.264989 3_4:-41112871 Msa0500610:three_prime_UTR
ACCACATAAAACTATTACTA+TGG 0.299237 3_4:+41113254 None:intergenic
TGCGAGTGTGAGATTGAATT+AGG 0.307685 3_4:+41116465 None:intergenic
GGAAAGCTTCAGCGTCTTCT+TGG 0.311162 3_4:+41116291 None:intergenic
GGAGGTTCCGGCGAGGGATT+TGG 0.319748 3_4:+41116400 None:intergenic
TATTGAACAGGAACTATCTA+AGG 0.328688 3_4:-41114081 Msa0500610:CDS
TTAAGGGAGGTCTATGGATA+TGG 0.354872 3_4:-41112904 Msa0500610:three_prime_UTR
AGGAACTATCTAAGGTTTCC+AGG 0.374565 3_4:-41114073 Msa0500610:CDS
GAGGTCTATGGATATGGATT+TGG 0.375732 3_4:-41112898 Msa0500610:three_prime_UTR
TCCATCAAAACCTTCCTTGC+TGG 0.381167 3_4:+41115161 None:intergenic
CAGATGAGTGAAAAGAATTC+CGG 0.382067 3_4:-41113372 Msa0500610:CDS
TTGCCCTGTATATTTCTCTA+AGG 0.385806 3_4:-41114728 Msa0500610:intron
ATTCTATACCATTATTTGCT+TGG 0.386433 3_4:+41114028 None:intergenic
TTCCTTATTTGAAGTGGATC+TGG 0.389220 3_4:+41115469 None:intergenic
CAAGGTGGTTACAGTGTTGA+TGG 0.389724 3_4:+41116525 None:intergenic
TCGGATTCTGTCTTAATTGT+GGG 0.393939 3_4:+41116661 None:intergenic
CACGAGTTAAGGGAGGTCTA+TGG 0.396337 3_4:-41112910 Msa0500610:three_prime_UTR
CGCTGAAGCTTTCCTTGCTC+AGG 0.397790 3_4:-41116282 Msa0500610:intron
CAATGTTTATTTCAGTTTAA+GGG 0.400376 3_4:-41113057 Msa0500610:three_prime_UTR
CTCGGATTCTGTCTTAATTG+TGG 0.407460 3_4:+41116660 None:intergenic
CAAACCTTAGAGAAATATAC+AGG 0.430319 3_4:+41114724 None:intergenic
GTTAAAGCGGCGGCGAAAGC+GGG 0.432701 3_4:+41116437 None:intergenic
TGTTCCAATAACTCTTGAAC+AGG 0.433983 3_4:-41116132 Msa0500610:intron
GTGAGATTGAATTAGGGTTC+CGG 0.435865 3_4:+41116472 None:intergenic
GTTGACTCATTCTTGTCAGC+TGG 0.440922 3_4:-41113206 Msa0500610:intron
TATATGTGAGAGGGCATTAC+GGG 0.449414 3_4:-41113080 Msa0500610:three_prime_UTR
TGGAGTTTCCAAGCAAATAA+TGG 0.452005 3_4:-41114036 Msa0500610:intron
GACGGTGTAAACGGAGGTTC+CGG 0.452524 3_4:+41116388 None:intergenic
GCGAGTGTGAGATTGAATTA+GGG 0.455909 3_4:+41116466 None:intergenic
AGCGGCGGCGAAAGCGGGGT+TGG 0.456106 3_4:+41116442 None:intergenic
CTCAGAGCCGCCAGCAAGGA+AGG 0.460599 3_4:-41115171 Msa0500610:CDS
GAGGGATTTGGCGACGTTGT+TGG 0.462263 3_4:+41116412 None:intergenic
GGAACTACTGACGGTGTAAA+CGG 0.467319 3_4:+41116379 None:intergenic
GTATACTTGTTGAAGGTTGA+AGG 0.475034 3_4:-41115511 Msa0500610:CDS
AGTGCATTCCTTATTTGAAG+TGG 0.479288 3_4:+41115463 None:intergenic
CAGGTGTTTGAACTATTTGG+AGG 0.482752 3_4:-41112852 Msa0500610:three_prime_UTR
GTTATAGGTATACTTGTTGA+AGG 0.482950 3_4:-41115518 Msa0500610:intron
CATCAGAACGAATTCATTGT+TGG 0.485434 3_4:+41116358 None:intergenic
TTAGCTTAAGTTTGCTCCCA+CGG 0.504552 3_4:+41113277 None:intergenic
TGGACAGGAAGATATTGAAC+AGG 0.507901 3_4:-41114093 Msa0500610:intron
GAAATTAAGGCTTAATTCCG+TGG 0.510348 3_4:-41113294 Msa0500610:exon
ATATATGTGAGAGGGCATTA+CGG 0.512955 3_4:-41113081 Msa0500610:three_prime_UTR
GAAGTGGATCTGGTAAGAAT+CGG 0.513973 3_4:+41115479 None:intergenic
ATTATTTGCTTGGAAACTCC+AGG 0.515291 3_4:+41114038 None:intergenic
GCTGAAGGTGCTAAGTCCAT+TGG 0.515881 3_4:-41116329 Msa0500610:CDS
ATTTCAGTTTAAGGGTCCCA+TGG 0.525510 3_4:-41113049 Msa0500610:three_prime_UTR
TTCATTGTTGGAACTACTGA+CGG 0.538242 3_4:+41116370 None:intergenic
GTTTATCCACGATCTAGTAA+AGG 0.539568 3_4:-41116631 Msa0500610:five_prime_UTR
TTTCTTGTATATGTTGAGAA+CGG 0.540120 3_4:+41113313 None:intergenic
TCCAGGGTATCTAAAAGTCC+TGG 0.546198 3_4:-41114056 Msa0500610:CDS
AAATTAAGGCTTAATTCCGT+GGG 0.566854 3_4:-41113293 Msa0500610:exon
TCTAATCCTTTACTAGATCG+TGG 0.567177 3_4:+41116625 None:intergenic
ACTTCAAATAAGGAATGCAC+TGG 0.568685 3_4:-41115461 Msa0500610:CDS
GTAAACGGAGGTTCCGGCGA+GGG 0.577581 3_4:+41116394 None:intergenic
GCGAAAGCAAAGCAATCCAA+TGG 0.584246 3_4:+41116313 None:intergenic
TGAATTTCGAGGCAATGCTA+AGG 0.584914 3_4:-41116156 Msa0500610:CDS
TGTCTTCAAAACGAGTTGCA+AGG 0.588693 3_4:+41116507 None:intergenic
AGTTAAAGCGGCGGCGAAAG+CGG 0.589283 3_4:+41116436 None:intergenic
ACTGCTTTAAGGATTTACAA+TGG 0.592283 3_4:-41113104 Msa0500610:three_prime_UTR
GGACTTAGCACCTTCAGCAT+CGG 0.600686 3_4:+41116334 None:intergenic
TACAATGGATATATGTGAGA+GGG 0.601524 3_4:-41113089 Msa0500610:three_prime_UTR
GACGTTGTTGGAAGTTAAAG+CGG 0.609660 3_4:+41116424 None:intergenic
GGAACTATCTAAGGTTTCCA+GGG 0.610500 3_4:-41114072 Msa0500610:CDS
TCGTGGATAAACTATAAGCT+CGG 0.613169 3_4:+41116642 None:intergenic
TCAGCTCAGAGCCGCCAGCA+AGG 0.614025 3_4:-41115175 Msa0500610:intron
TCAAATAAGGAATGCACTGG+AGG 0.614598 3_4:-41115458 Msa0500610:intron
AGAGGAACGTTACCTGAGCA+AGG 0.617638 3_4:+41116270 None:intergenic
AACGTCGCCAAATCCCTCGC+CGG 0.619652 3_4:-41116407 Msa0500610:CDS
AACCGCGAAAATGATAGAAG+CGG 0.620119 3_4:+41116551 None:intergenic
TTAAAGCGGCGGCGAAAGCG+GGG 0.621674 3_4:+41116438 None:intergenic
GAGTGAAAAGAATTCCGGAT+GGG 0.636301 3_4:-41113367 Msa0500610:CDS
ATCAAAACCTTCCTTGCTGG+CGG 0.637557 3_4:+41115164 None:intergenic
TGAGTGAAAAGAATTCCGGA+TGG 0.637585 3_4:-41113368 Msa0500610:CDS
TTACAATGGATATATGTGAG+AGG 0.640775 3_4:-41113090 Msa0500610:three_prime_UTR
AAATGGAGTCACAAGGACAG+TGG 0.653796 3_4:-41116577 Msa0500610:CDS
TGTAAACGGAGGTTCCGGCG+AGG 0.668767 3_4:+41116393 None:intergenic
GTTCTGATGTCCGATGCTGA+AGG 0.674395 3_4:-41116344 Msa0500610:CDS
GTTGTTGGAAGTTAAAGCGG+CGG 0.684073 3_4:+41116427 None:intergenic
CTTCAAAACGAGTTGCAAGG+TGG 0.698132 3_4:+41116510 None:intergenic
AAACCTTAGAGAAATATACA+GGG 0.722468 3_4:+41114725 None:intergenic
ACTACTGACGGTGTAAACGG+AGG 0.722610 3_4:+41116382 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAGTTAAATTGTTTTT+TGG + chr3_4:41113630-41113649 None:intergenic 10.0%
!! ATTTCTAAATTAAAAATAGA+GGG + chr3_4:41114859-41114878 None:intergenic 10.0%
!! AATTTCTAAATTAAAAATAG+AGG + chr3_4:41114860-41114879 None:intergenic 10.0%
!!! TTTATGTTTCTTTAATTTTA+TGG - chr3_4:41115616-41115635 Msa0500610:intron 10.0%
!! ATTTCATTGATACATAAATT+AGG + chr3_4:41113742-41113761 None:intergenic 15.0%
!!! TATTTTTAATTACGCAATTT+TGG - chr3_4:41114891-41114910 Msa0500610:intron 15.0%
!! ATAATTTATCATTCATTTGA+AGG - chr3_4:41115931-41115950 Msa0500610:intron 15.0%
!! TTCAATTATGATAATTAAAC+AGG - chr3_4:41115973-41115992 Msa0500610:intron 15.0%
!! ATTGGTATAGTTAATAATAT+AGG - chr3_4:41116053-41116072 Msa0500610:intron 15.0%
!! ATTTGTAGAAGAAACAAAAA+TGG - chr3_4:41112898-41112917 Msa0500610:three_prime_UTR 20.0%
!!! ATAAATTTTGTTAAACCGTT+TGG - chr3_4:41113524-41113543 Msa0500610:intron 20.0%
!!! TAAATTTTGTTAAACCGTTT+GGG - chr3_4:41113525-41113544 Msa0500610:intron 20.0%
!! ATATAGATATGAATTCAAAG+GGG + chr3_4:41113779-41113798 None:intergenic 20.0%
!! CATATAGATATGAATTCAAA+GGG + chr3_4:41113780-41113799 None:intergenic 20.0%
!! CTTTGAATTCATATCTATAT+GGG - chr3_4:41113779-41113798 Msa0500610:intron 20.0%
!!! TTTTTGAAGCATAATAAGTA+TGG - chr3_4:41113915-41113934 Msa0500610:intron 20.0%
!!! TCAGTTTTAAATGTAAATCA+TGG - chr3_4:41114165-41114184 Msa0500610:intron 20.0%
!! AAATGTGATTATTAGTCAAT+AGG + chr3_4:41114698-41114717 None:intergenic 20.0%
!! TCATCATCATAGTTAAAAAT+TGG + chr3_4:41114937-41114956 None:intergenic 20.0%
!! ATCTTCATTGTTAAACATTT+AGG - chr3_4:41115215-41115234 Msa0500610:intron 20.0%
!! TCTTCATTGTTAAACATTTA+GGG - chr3_4:41115216-41115235 Msa0500610:intron 20.0%
!!! ATTTGTTTTAGTGCTATAAA+TGG - chr3_4:41115584-41115603 Msa0500610:intron 20.0%
!!! TATGGATAAAAACACATTTT+TGG - chr3_4:41115634-41115653 Msa0500610:intron 20.0%
!!! ATAAAAACACATTTTTGGAT+GGG - chr3_4:41115639-41115658 Msa0500610:intron 20.0%
!! AAAATTGAAATCAGAACATA+AGG + chr3_4:41115836-41115855 None:intergenic 20.0%
!! ATTATGATAATTAAACAGGT+TGG - chr3_4:41115977-41115996 Msa0500610:intron 20.0%
!!! TAATAGTAAAGTTTGCTTAT+TGG - chr3_4:41116035-41116054 Msa0500610:intron 20.0%
!! TAATAATATAGGAAGCAATT+TGG - chr3_4:41116064-41116083 Msa0500610:intron 20.0%
!! TCAACATATACAAGAAATTA+AGG - chr3_4:41116185-41116204 Msa0500610:intron 20.0%
!! AAGAAAAGAAACTATTGTAA+GGG + chr3_4:41116330-41116349 None:intergenic 20.0%
!! AAAGAAAAGAAACTATTGTA+AGG + chr3_4:41116331-41116350 None:intergenic 20.0%
!! CAATGTTTATTTCAGTTTAA+GGG - chr3_4:41116435-41116454 Msa0500610:CDS 20.0%
!! AATAAGTTTAATTACTTTGC+AGG - chr3_4:41116621-41116640 Msa0500610:five_prime_UTR 20.0%
! AAAAAACAAATTACTGAGAG+AGG + chr3_4:41113243-41113262 None:intergenic 25.0%
!!! GATTGCTTTTAATTCACTAA+GGG - chr3_4:41113478-41113497 Msa0500610:intron 25.0%
!! ACTGTTTTCATAAACTATCT+TGG + chr3_4:41113572-41113591 None:intergenic 25.0%
! ATACATAAATTAGGCACTTA+TGG + chr3_4:41113733-41113752 None:intergenic 25.0%
! TATAGATATGAATTCAAAGG+GGG + chr3_4:41113778-41113797 None:intergenic 25.0%
! CCATATAGATATGAATTCAA+AGG + chr3_4:41113781-41113800 None:intergenic 25.0%
! CCTTTGAATTCATATCTATA+TGG - chr3_4:41113778-41113797 Msa0500610:intron 25.0%
!!! CACACCTTTACTTTTAATAA+CGG - chr3_4:41113866-41113885 Msa0500610:intron 25.0%
!!! ACACCTTTACTTTTAATAAC+GGG - chr3_4:41113867-41113886 Msa0500610:intron 25.0%
! TTACCCGTTATTAAAAGTAA+AGG + chr3_4:41113873-41113892 None:intergenic 25.0%
!!! TTTACTTTTAATAACGGGTA+AGG - chr3_4:41113872-41113891 Msa0500610:intron 25.0%
!!! TTACTTTTAATAACGGGTAA+GGG - chr3_4:41113873-41113892 Msa0500610:intron 25.0%
!!! GATGATGAAAATACTAGTTT+TGG + chr3_4:41114103-41114122 None:intergenic 25.0%
!!! GTTTTAAATGTAAATCATGG+AGG - chr3_4:41114168-41114187 Msa0500610:intron 25.0%
! TATATCAGTAGCTATAAGTT+TGG - chr3_4:41114480-41114499 Msa0500610:intron 25.0%
! TAACATATAAATTCCAAGAC+TGG - chr3_4:41114570-41114589 Msa0500610:intron 25.0%
! CAGATACTAAAATAGTTTGA+TGG + chr3_4:41114611-41114630 None:intergenic 25.0%
! AAACCTTAGAGAAATATACA+GGG + chr3_4:41114770-41114789 None:intergenic 25.0%
! TGCGTAATTAAAAATATCGA+GGG + chr3_4:41114887-41114906 None:intergenic 25.0%
! TTGCGTAATTAAAAATATCG+AGG + chr3_4:41114888-41114907 None:intergenic 25.0%
! TGTGTAATACAAAAAACACT+CGG - chr3_4:41115138-41115157 Msa0500610:intron 25.0%
! GCTAGAATGAAATGAAAAAT+AGG - chr3_4:41115255-41115274 Msa0500610:intron 25.0%
! ATTAACCCTAAATCTTAGTT+AGG - chr3_4:41115324-41115343 Msa0500610:intron 25.0%
!! ATATGATAGTTTTCGTTTGT+TGG - chr3_4:41115371-41115390 Msa0500610:intron 25.0%
! ATTCTATACCATTATTTGCT+TGG + chr3_4:41115467-41115486 None:intergenic 25.0%
!!! GATAAAAACACATTTTTGGA+TGG - chr3_4:41115638-41115657 Msa0500610:intron 25.0%
!!! TTCAAATTGTTATTTTCGCA+TGG + chr3_4:41115671-41115690 None:intergenic 25.0%
!! ACATGTTTTCTTGAATAAAC+AGG - chr3_4:41115772-41115791 Msa0500610:intron 25.0%
!! CATGTTTTCTTGAATAAACA+GGG - chr3_4:41115773-41115792 Msa0500610:intron 25.0%
! TTTCTTGTATATGTTGAGAA+CGG + chr3_4:41116182-41116201 None:intergenic 25.0%
!!! ACCATAGTAATAGTTTTATG+TGG - chr3_4:41116237-41116256 Msa0500610:intron 25.0%
! ACCACATAAAACTATTACTA+TGG + chr3_4:41116241-41116260 None:intergenic 25.0%
! GCAATGTTTATTTCAGTTTA+AGG - chr3_4:41116434-41116453 Msa0500610:CDS 25.0%
! TGAAAAAACTGTACATGAAT+TGG + chr3_4:41116519-41116538 None:intergenic 25.0%
!!! CATGTACAGTTTTTTCATTT+TGG - chr3_4:41116522-41116541 Msa0500610:CDS 25.0%
!! AATGTTTTGCTCGTTGTTTT+AGG - chr3_4:41113297-41113316 Msa0500610:exon 30.0%
!! CGATTGCTTTTAATTCACTA+AGG - chr3_4:41113477-41113496 Msa0500610:intron 30.0%
ATGAAATAAGTTCTCCCAAA+CGG + chr3_4:41113542-41113561 None:intergenic 30.0%
!!! TACTTTTAATAACGGGTAAG+GGG - chr3_4:41113874-41113893 Msa0500610:intron 30.0%
!! TTCAAAAAGTATCTGATTGC+AGG + chr3_4:41113903-41113922 None:intergenic 30.0%
AGAAAAGTTGTTACAGATAC+AGG + chr3_4:41113948-41113967 None:intergenic 30.0%
AACAAGTATACCTATAACAC+AGG + chr3_4:41113972-41113991 None:intergenic 30.0%
! GTTATAGGTATACTTGTTGA+AGG - chr3_4:41113974-41113993 Msa0500610:intron 30.0%
TTGTGTGCAACAATTATAAC+CGG + chr3_4:41114066-41114085 None:intergenic 30.0%
TGTAAATCATGGAGGAAAAT+AGG - chr3_4:41114176-41114195 Msa0500610:intron 30.0%
AGAAAACATACCTGAAAAAC+AGG + chr3_4:41114360-41114379 None:intergenic 30.0%
! TCAGGTATGTTTTCTTACTT+TGG - chr3_4:41114365-41114384 Msa0500610:intron 30.0%
! AGTTCTTTAGAGGACTAATT+GGG - chr3_4:41114396-41114415 Msa0500610:intron 30.0%
ATATGTTACATACCATGCAT+TGG + chr3_4:41114558-41114577 None:intergenic 30.0%
ATTTATATCAGACTCCAGAT+GGG + chr3_4:41114634-41114653 None:intergenic 30.0%
TATTTATATCAGACTCCAGA+TGG + chr3_4:41114635-41114654 None:intergenic 30.0%
! TTGCTTACAGTCAGAATTTT+TGG - chr3_4:41114716-41114735 Msa0500610:intron 30.0%
CAAACCTTAGAGAAATATAC+AGG + chr3_4:41114771-41114790 None:intergenic 30.0%
TGCATATTGACCATAATAGA+GGG + chr3_4:41114829-41114848 None:intergenic 30.0%
TTGCATATTGACCATAATAG+AGG + chr3_4:41114830-41114849 None:intergenic 30.0%
! TAACTATGATGATGATGATG+TGG - chr3_4:41114942-41114961 Msa0500610:intron 30.0%
TAACAACTACACCAACTTAA+TGG - chr3_4:41115080-41115099 Msa0500610:intron 30.0%
AACAACTACACCAACTTAAT+GGG - chr3_4:41115081-41115100 Msa0500610:intron 30.0%
GTTTAACAATGAAGATGATG+CGG + chr3_4:41115211-41115230 None:intergenic 30.0%
! TTTAGGGTTAATTGCACTTA+TGG + chr3_4:41115316-41115335 None:intergenic 30.0%
ACATGCCTAACTAAGATTTA+GGG + chr3_4:41115332-41115351 None:intergenic 30.0%
TACATGCCTAACTAAGATTT+AGG + chr3_4:41115333-41115352 None:intergenic 30.0%
!! GTTTTCGTTTGTTGGTTAAA+TGG - chr3_4:41115379-41115398 Msa0500610:intron 30.0%
TATTGAACAGGAACTATCTA+AGG - chr3_4:41115411-41115430 Msa0500610:intron 30.0%
! CTTCAGCATAATTGTTTTCA+AGG + chr3_4:41115559-41115578 None:intergenic 30.0%
GAACTATAGTCTCATACATA+GGG + chr3_4:41115695-41115714 None:intergenic 30.0%
TGAACTATAGTCTCATACAT+AGG + chr3_4:41115696-41115715 None:intergenic 30.0%
TTTCTTCCATGGAAAATGTT+AGG - chr3_4:41115736-41115755 Msa0500610:intron 30.0%
! TTTTCTCCTAACATTTTCCA+TGG + chr3_4:41115745-41115764 None:intergenic 30.0%
ATGGAAAATGTTAGGAGAAA+AGG - chr3_4:41115744-41115763 Msa0500610:intron 30.0%
TGGAAAATGTTAGGAGAAAA+GGG - chr3_4:41115745-41115764 Msa0500610:intron 30.0%
CAGGGAAATATTTATGTTTG+TGG - chr3_4:41115791-41115810 Msa0500610:intron 30.0%
CGAAGATGTACTGAAAAAAA+TGG - chr3_4:41116006-41116025 Msa0500610:intron 30.0%
AGATGTACTGAAAAAAATGG+AGG - chr3_4:41116009-41116028 Msa0500610:intron 30.0%
AAAAATCAAATCATCCCATC+CGG + chr3_4:41116142-41116161 None:intergenic 30.0%
AAATTAAGGCTTAATTCCGT+GGG - chr3_4:41116199-41116218 Msa0500610:intron 30.0%
!! ACTGCTTTAAGGATTTACAA+TGG - chr3_4:41116388-41116407 Msa0500610:CDS 30.0%
TTACAATGGATATATGTGAG+AGG - chr3_4:41116402-41116421 Msa0500610:CDS 30.0%
TACAATGGATATATGTGAGA+GGG - chr3_4:41116403-41116422 Msa0500610:CDS 30.0%
TCGGATTCTGTCTTAATTGT+GGG + chr3_4:41112834-41112853 None:intergenic 35.0%
TCGTGGATAAACTATAAGCT+CGG + chr3_4:41112853-41112872 None:intergenic 35.0%
GTTTATCCACGATCTAGTAA+AGG - chr3_4:41112861-41112880 Msa0500610:three_prime_UTR 35.0%
TCTAATCCTTTACTAGATCG+TGG + chr3_4:41112870-41112889 None:intergenic 35.0%
GAAACAAAAATGGAGTCACA+AGG - chr3_4:41112908-41112927 Msa0500610:three_prime_UTR 35.0%
TTCATTGTTGGAACTACTGA+CGG + chr3_4:41113125-41113144 None:intergenic 35.0%
CATCAGAACGAATTCATTGT+TGG + chr3_4:41113137-41113156 None:intergenic 35.0%
TCACGGAAAAATGAATTTCG+AGG - chr3_4:41113325-41113344 Msa0500610:CDS 35.0%
TGTTCCAATAACTCTTGAAC+AGG - chr3_4:41113360-41113379 Msa0500610:CDS 35.0%
ACTACCTGTTCAAGAGTTAT+TGG + chr3_4:41113367-41113386 None:intergenic 35.0%
TAATTATCTCCTGCTAATGC+TGG - chr3_4:41113402-41113421 Msa0500610:intron 35.0%
ATCGAGTACGAAATACAGAT+TGG + chr3_4:41113461-41113480 None:intergenic 35.0%
GCTTATCTGAGCTTATTTAG+TGG - chr3_4:41113500-41113519 Msa0500610:CDS 35.0%
! AAGTAAAGGTGTGACATTCA+TGG + chr3_4:41113859-41113878 None:intergenic 35.0%
!!! ACTTTTAATAACGGGTAAGG+GGG - chr3_4:41113875-41113894 Msa0500610:intron 35.0%
! AACTTTTCTGCCTGTGTTAT+AGG - chr3_4:41113959-41113978 Msa0500610:intron 35.0%
! GTATACTTGTTGAAGGTTGA+AGG - chr3_4:41113981-41114000 Msa0500610:intron 35.0%
TACCAGATCCACTTCAAATA+AGG - chr3_4:41114021-41114040 Msa0500610:intron 35.0%
! TTCCTTATTTGAAGTGGATC+TGG + chr3_4:41114026-41114045 None:intergenic 35.0%
! AGTGCATTCCTTATTTGAAG+TGG + chr3_4:41114032-41114051 None:intergenic 35.0%
ACTTCAAATAAGGAATGCAC+TGG - chr3_4:41114031-41114050 Msa0500610:intron 35.0%
CGTAATATGCATGATAGTTG+CGG - chr3_4:41114203-41114222 Msa0500610:intron 35.0%
!! AATTAGTTCTGTGACTGAAC+AGG - chr3_4:41114232-41114251 Msa0500610:intron 35.0%
! CAATTAGTCCTCTAAAGAAC+TGG + chr3_4:41114397-41114416 None:intergenic 35.0%
! CAGTTCTTTAGAGGACTAAT+TGG - chr3_4:41114395-41114414 Msa0500610:intron 35.0%
! GTTCTTTAGAGGACTAATTG+GGG - chr3_4:41114397-41114416 Msa0500610:intron 35.0%
ATTGGCTGCAGTTAATTACT+TGG + chr3_4:41114540-41114559 None:intergenic 35.0%
!!! TATTTTAGTATCTGCCCATC+TGG - chr3_4:41114617-41114636 Msa0500610:intron 35.0%
TTGCCCTGTATATTTCTCTA+AGG - chr3_4:41114764-41114783 Msa0500610:CDS 35.0%
TTGCAGTTAAAGAGACCAAT+GGG + chr3_4:41114799-41114818 None:intergenic 35.0%
ATTGAATACGTGAAACGACA+TGG - chr3_4:41114981-41115000 Msa0500610:intron 35.0%
!! CATCCATACTTGCTATATTC+CGG + chr3_4:41115110-41115129 None:intergenic 35.0%
GTAATACAAAAAACACTCGG+TGG - chr3_4:41115141-41115160 Msa0500610:intron 35.0%
TTGAACATGTGAAGCTAAGA+CGG + chr3_4:41115167-41115186 None:intergenic 35.0%
TTTAGGGACAACTTGACTAA+TGG - chr3_4:41115232-41115251 Msa0500610:intron 35.0%
TTAGGGACAACTTGACTAAT+GGG - chr3_4:41115233-41115252 Msa0500610:intron 35.0%
ATTATTTGCTTGGAAACTCC+AGG + chr3_4:41115457-41115476 None:intergenic 35.0%
TGGAGTTTCCAAGCAAATAA+TGG - chr3_4:41115456-41115475 Msa0500610:intron 35.0%
! CTTTTGTGATCTTTCTTCCA+TGG - chr3_4:41115725-41115744 Msa0500610:intron 35.0%
TTTGAAAACTCTGACAAACC+AGG + chr3_4:41115875-41115894 None:intergenic 35.0%
CAGATGAGTGAAAAGAATTC+CGG - chr3_4:41116120-41116139 Msa0500610:intron 35.0%
!! GATTTGATTTTTATTCCCCC+TGG - chr3_4:41116150-41116169 Msa0500610:CDS 35.0%
GAAATTAAGGCTTAATTCCG+TGG - chr3_4:41116198-41116217 Msa0500610:intron 35.0%
AAGAAACTATTGTAAGGGAG+AGG + chr3_4:41116325-41116344 None:intergenic 35.0%
AAAGCAGTATCTGCATGAAA+AGG + chr3_4:41116376-41116395 None:intergenic 35.0%
TTCATGCAGATACTGCTTTA+AGG - chr3_4:41116377-41116396 Msa0500610:CDS 35.0%
!! ATATATGTGAGAGGGCATTA+CGG - chr3_4:41116411-41116430 Msa0500610:CDS 35.0%
!! TTCTACTTTTGCACGAGTTA+AGG - chr3_4:41116571-41116590 Msa0500610:CDS 35.0%
!! TCTACTTTTGCACGAGTTAA+GGG - chr3_4:41116572-41116591 Msa0500610:CDS 35.0%
TTGCAGGTGTTTGAACTATT+TGG - chr3_4:41116637-41116656 Msa0500610:five_prime_UTR 35.0%
CTCGGATTCTGTCTTAATTG+TGG + chr3_4:41112835-41112854 None:intergenic 40.0%
! ATCCGCTTCTATCATTTTCG+CGG - chr3_4:41112939-41112958 Msa0500610:three_prime_UTR 40.0%
AACCGCGAAAATGATAGAAG+CGG + chr3_4:41112944-41112963 None:intergenic 40.0%
TGTCTTCAAAACGAGTTGCA+AGG + chr3_4:41112988-41113007 None:intergenic 40.0%
GAAGACACAAAAAAACTCGC+CGG - chr3_4:41113001-41113020 Msa0500610:three_prime_UTR 40.0%
GTGAGATTGAATTAGGGTTC+CGG + chr3_4:41113023-41113042 None:intergenic 40.0%
GCGAGTGTGAGATTGAATTA+GGG + chr3_4:41113029-41113048 None:intergenic 40.0%
TGCGAGTGTGAGATTGAATT+AGG + chr3_4:41113030-41113049 None:intergenic 40.0%
GACGTTGTTGGAAGTTAAAG+CGG + chr3_4:41113071-41113090 None:intergenic 40.0%
!!! CGTTGTTTTAGGTTCGATCA+CGG - chr3_4:41113308-41113327 Msa0500610:CDS 40.0%
TGAATTTCGAGGCAATGCTA+AGG - chr3_4:41113336-41113355 Msa0500610:CDS 40.0%
GTGATAAAACCAGCATTAGC+AGG + chr3_4:41113414-41113433 None:intergenic 40.0%
TGCTATATGTCAGTAGCACA+TGG + chr3_4:41113829-41113848 None:intergenic 40.0%
GAAGTGGATCTGGTAAGAAT+CGG + chr3_4:41114016-41114035 None:intergenic 40.0%
TCAAATAAGGAATGCACTGG+AGG - chr3_4:41114034-41114053 Msa0500610:intron 40.0%
TTCCATAGTGACACTGCTAT+AGG + chr3_4:41114131-41114150 None:intergenic 40.0%
!! TGATGGAGTTCCTGTTTTTC+AGG - chr3_4:41114347-41114366 Msa0500610:intron 40.0%
GACTAATTGGGGAATGTTGA+GGG - chr3_4:41114408-41114427 Msa0500610:intron 40.0%
AATTAACTGCAGCCAATGCA+TGG - chr3_4:41114543-41114562 Msa0500610:intron 40.0%
TTTAAGCTGTTTGCCAGTCT+TGG + chr3_4:41114586-41114605 None:intergenic 40.0%
CTAAGGTTTGTCTAACCCAT+TGG - chr3_4:41114781-41114800 Msa0500610:intron 40.0%
GTTGCAGTTAAAGAGACCAA+TGG + chr3_4:41114800-41114819 None:intergenic 40.0%
ATTGGATGACAACTTGACAG+AGG + chr3_4:41114919-41114938 None:intergenic 40.0%
! CTATGATGATGATGATGTGG+CGG - chr3_4:41114945-41114964 Msa0500610:intron 40.0%
!! ATGGCTATAGAGTGCTGATA+TGG - chr3_4:41115000-41115019 Msa0500610:intron 40.0%
CTACCGGAATATAGCAAGTA+TGG - chr3_4:41115104-41115123 Msa0500610:intron 40.0%
! TTACTGCCAATCTGCACTTT+TGG + chr3_4:41115285-41115304 None:intergenic 40.0%
TAGTTAGGCATGTAGCTTGA+TGG - chr3_4:41115339-41115358 Msa0500610:intron 40.0%
! CGTTTGTTGGTTAAATGGAC+AGG - chr3_4:41115384-41115403 Msa0500610:intron 40.0%
TGGACAGGAAGATATTGAAC+AGG - chr3_4:41115399-41115418 Msa0500610:intron 40.0%
! AGGAACTATCTAAGGTTTCC+AGG - chr3_4:41115419-41115438 Msa0500610:intron 40.0%
! GGAACTATCTAAGGTTTCCA+GGG - chr3_4:41115420-41115439 Msa0500610:intron 40.0%
! TTGTTAGTCTGCTTGATACC+TGG - chr3_4:41115854-41115873 Msa0500610:intron 40.0%
! CTTTTCACTCATCTGCAATG+TGG + chr3_4:41116115-41116134 None:intergenic 40.0%
TGAGTGAAAAGAATTCCGGA+TGG - chr3_4:41116124-41116143 Msa0500610:intron 40.0%
GAGTGAAAAGAATTCCGGAT+GGG - chr3_4:41116125-41116144 Msa0500610:intron 40.0%
! TTAGCTTAAGTTTGCTCCCA+CGG + chr3_4:41116218-41116237 None:intergenic 40.0%
!! TATATGTGAGAGGGCATTAC+GGG - chr3_4:41116412-41116431 Msa0500610:CDS 40.0%
ATTTCAGTTTAAGGGTCCCA+TGG - chr3_4:41116443-41116462 Msa0500610:CDS 40.0%
CTCAAAAATCGCAGTTCCAT+GGG + chr3_4:41116462-41116481 None:intergenic 40.0%
ACTCAAAAATCGCAGTTCCA+TGG + chr3_4:41116463-41116482 None:intergenic 40.0%
TTAAGGGAGGTCTATGGATA+TGG - chr3_4:41116588-41116607 Msa0500610:exon 40.0%
GAGGTCTATGGATATGGATT+TGG - chr3_4:41116594-41116613 Msa0500610:exon 40.0%
CAGGTGTTTGAACTATTTGG+AGG - chr3_4:41116640-41116659 Msa0500610:five_prime_UTR 40.0%
AAATGGAGTCACAAGGACAG+TGG - chr3_4:41112915-41112934 Msa0500610:three_prime_UTR 45.0%
! CAAGGTGGTTACAGTGTTGA+TGG + chr3_4:41112970-41112989 None:intergenic 45.0%
CTTCAAAACGAGTTGCAAGG+TGG + chr3_4:41112985-41113004 None:intergenic 45.0%
GTTGTTGGAAGTTAAAGCGG+CGG + chr3_4:41113068-41113087 None:intergenic 45.0%
GGAACTACTGACGGTGTAAA+CGG + chr3_4:41113116-41113135 None:intergenic 45.0%
GCGAAAGCAAAGCAATCCAA+TGG + chr3_4:41113182-41113201 None:intergenic 45.0%
GGTGTGACATTCATGGTTGT+AGG + chr3_4:41113852-41113871 None:intergenic 45.0%
! AATGCACTGGAGGTTAGTTC+CGG - chr3_4:41114044-41114063 Msa0500610:CDS 45.0%
! GTCCTATAGCAGTGTCACTA+TGG - chr3_4:41114126-41114145 Msa0500610:intron 45.0%
ATCAAAACCTTCCTTGCTGG+CGG + chr3_4:41114331-41114350 None:intergenic 45.0%
TCCATCAAAACCTTCCTTGC+TGG + chr3_4:41114334-41114353 None:intergenic 45.0%
GGACTAATTGGGGAATGTTG+AGG - chr3_4:41114407-41114426 Msa0500610:intron 45.0%
GGTCTCTTTAACTGCAACTC+TGG - chr3_4:41114802-41114821 Msa0500610:intron 45.0%
CAACTCTGGTCCCTCTATTA+TGG - chr3_4:41114816-41114835 Msa0500610:intron 45.0%
!! ACACCAACTTAATGGGCTAC+CGG - chr3_4:41115088-41115107 Msa0500610:intron 45.0%
ATTCCGGTAGCCCATTAAGT+TGG + chr3_4:41115094-41115113 None:intergenic 45.0%
! GGATGACCAAAAGTGCAGAT+TGG - chr3_4:41115276-41115295 Msa0500610:intron 45.0%
TGCAGATTGGCAGTAAGAGA+GGG - chr3_4:41115289-41115308 Msa0500610:intron 45.0%
! TCCAGGGTATCTAAAAGTCC+TGG - chr3_4:41115436-41115455 Msa0500610:intron 45.0%
! TCCAGGACTTTTAGATACCC+TGG + chr3_4:41115440-41115459 None:intergenic 45.0%
!! TTGAGAACGGCTTTTTCCAG+GGG + chr3_4:41116169-41116188 None:intergenic 45.0%
!! GTTGAGAACGGCTTTTTCCA+GGG + chr3_4:41116170-41116189 None:intergenic 45.0%
!! TGTTGAGAACGGCTTTTTCC+AGG + chr3_4:41116171-41116190 None:intergenic 45.0%
! GTTGACTCATTCTTGTCAGC+TGG - chr3_4:41116286-41116305 Msa0500610:CDS 45.0%
! ACTTTTGCACGAGTTAAGGG+AGG - chr3_4:41116575-41116594 Msa0500610:CDS 45.0%
ACTACTGACGGTGTAAACGG+AGG + chr3_4:41113113-41113132 None:intergenic 50.0%
GTTCTGATGTCCGATGCTGA+AGG - chr3_4:41113148-41113167 Msa0500610:intron 50.0%
GGACTTAGCACCTTCAGCAT+CGG + chr3_4:41113161-41113180 None:intergenic 50.0%
!! GCTGAAGGTGCTAAGTCCAT+TGG - chr3_4:41113163-41113182 Msa0500610:intron 50.0%
GGAAAGCTTCAGCGTCTTCT+TGG + chr3_4:41113204-41113223 None:intergenic 50.0%
AGAGGAACGTTACCTGAGCA+AGG + chr3_4:41113225-41113244 None:intergenic 50.0%
TATGCATGATAGTTGCGGCG+TGG - chr3_4:41114208-41114227 Msa0500610:intron 50.0%
ATGCATGATAGTTGCGGCGT+GGG - chr3_4:41114209-41114228 Msa0500610:intron 50.0%
!! GCCAGCAAGGAAGGTTTTGA+TGG - chr3_4:41114330-41114349 Msa0500610:intron 50.0%
GGCAGTCTCCAGTTCTTTAG+AGG - chr3_4:41114386-41114405 Msa0500610:intron 50.0%
ATTGGGGAATGTTGAGGGTG+TGG - chr3_4:41114413-41114432 Msa0500610:intron 50.0%
! TTGGGGAATGTTGAGGGTGT+GGG - chr3_4:41114414-41114433 Msa0500610:intron 50.0%
GTGCAGATTGGCAGTAAGAG+AGG - chr3_4:41115288-41115307 Msa0500610:intron 50.0%
!! TGAGAACGGCTTTTTCCAGG+GGG + chr3_4:41116168-41116187 None:intergenic 50.0%
TTGTCAGCTGGTGAGATGTC+AGG - chr3_4:41116298-41116317 Msa0500610:CDS 50.0%
CACGAGTTAAGGGAGGTCTA+TGG - chr3_4:41116582-41116601 Msa0500610:exon 50.0%
AGTTAAAGCGGCGGCGAAAG+CGG + chr3_4:41113059-41113078 None:intergenic 55.0%
GAGGGATTTGGCGACGTTGT+TGG + chr3_4:41113083-41113102 None:intergenic 55.0%
GACGGTGTAAACGGAGGTTC+CGG + chr3_4:41113107-41113126 None:intergenic 55.0%
CGCTGAAGCTTTCCTTGCTC+AGG - chr3_4:41113210-41113229 Msa0500610:three_prime_UTR 55.0%
TTAAAGCGGCGGCGAAAGCG+GGG + chr3_4:41113057-41113076 None:intergenic 60.0%
GTTAAAGCGGCGGCGAAAGC+GGG + chr3_4:41113058-41113077 None:intergenic 60.0%
AACGTCGCCAAATCCCTCGC+CGG - chr3_4:41113085-41113104 Msa0500610:three_prime_UTR 60.0%
GTAAACGGAGGTTCCGGCGA+GGG + chr3_4:41113101-41113120 None:intergenic 60.0%
TGTAAACGGAGGTTCCGGCG+AGG + chr3_4:41113102-41113121 None:intergenic 60.0%
! GGAATGTTGAGGGTGTGGGC+AGG - chr3_4:41114418-41114437 Msa0500610:intron 60.0%
GGAGGTTCCGGCGAGGGATT+TGG + chr3_4:41113095-41113114 None:intergenic 65.0%
TCAGCTCAGAGCCGCCAGCA+AGG - chr3_4:41114317-41114336 Msa0500610:intron 65.0%
CTCAGAGCCGCCAGCAAGGA+AGG - chr3_4:41114321-41114340 Msa0500610:intron 65.0%
AGCGGCGGCGAAAGCGGGGT+TGG + chr3_4:41113053-41113072 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41112814 41116700 41112814 ID=Msa0500610;Name=Msa0500610
chr3_4 mRNA 41112814 41116700 41112814 ID=Msa0500610-mRNA-1;Parent=Msa0500610;Name=Msa0500610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=103|1|1|1|0.87|0.77|9|410|252
chr3_4 exon 41112814 41113128 41112814 ID=Msa0500610-mRNA-1:exon:8523;Parent=Msa0500610-mRNA-1
chr3_4 exon 41113207 41113391 41113207 ID=Msa0500610-mRNA-1:exon:8522;Parent=Msa0500610-mRNA-1
chr3_4 exon 41113484 41113519 41113484 ID=Msa0500610-mRNA-1:exon:8521;Parent=Msa0500610-mRNA-1
chr3_4 exon 41114037 41114108 41114037 ID=Msa0500610-mRNA-1:exon:8520;Parent=Msa0500610-mRNA-1
chr3_4 exon 41114729 41114788 41114729 ID=Msa0500610-mRNA-1:exon:8519;Parent=Msa0500610-mRNA-1
chr3_4 exon 41115146 41115193 41115146 ID=Msa0500610-mRNA-1:exon:8518;Parent=Msa0500610-mRNA-1
chr3_4 exon 41115459 41115533 41115459 ID=Msa0500610-mRNA-1:exon:8517;Parent=Msa0500610-mRNA-1
chr3_4 exon 41116133 41116195 41116133 ID=Msa0500610-mRNA-1:exon:8516;Parent=Msa0500610-mRNA-1
chr3_4 exon 41116283 41116700 41116283 ID=Msa0500610-mRNA-1:exon:8515;Parent=Msa0500610-mRNA-1
chr3_4 five_prime_UTR 41116598 41116700 41116598 ID=Msa0500610-mRNA-1:five_prime_utr;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41116283 41116597 41116283 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41116133 41116195 41116133 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41115459 41115533 41115459 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41115146 41115193 41115146 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41114729 41114788 41114729 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41114037 41114108 41114037 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41113484 41113519 41113484 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 CDS 41113302 41113391 41113302 ID=Msa0500610-mRNA-1:cds;Parent=Msa0500610-mRNA-1
chr3_4 three_prime_UTR 41113207 41113301 41113207 ID=Msa0500610-mRNA-1:three_prime_utr;Parent=Msa0500610-mRNA-1
chr3_4 three_prime_UTR 41112814 41113128 41112814 ID=Msa0500610-mRNA-1:three_prime_utr;Parent=Msa0500610-mRNA-1
Gene Sequence

>Msa0500610

ATGGAGTCACAAGGACAGTGGAATCCGCTTCTATCATTTTCGCGGTTCATCCATCAACACTGTAACCACCTTGCAACTCGTTTTGAAGACACAAAAAAACTCGCCGGAACCCTAATTCAATCTCACACTCGCACCAACCCCGCTTTCGCCGCCGCTTTAACTTCCAACAACGTCGCCAAATCCCTCGCCGGAACCTCCGTTTACACCGTCAGTAGTTCCAACAATGAATTCGTTCTGATGTCCGATGCTGAAGGTGCTAAGTCCATTGGATTGCTTTGCTTTCGCCAAGAAGACGCTGAAGCTTTCCTTGCTCAGGTTCGATCACGGAAAAATGAATTTCGAGGCAATGCTAAGGTTGTTCCAATAACTCTTGAACAGGTATACTTGTTGAAGGTTGAAGGTATTGCATTCCGATTCTTACCAGATCCACTTCAAATAAGGAATGCACTGGAGCTCAGAGCCGCCAGCAAGGAAGGTTTTGATGGAGTTCCTGTTTTTCAGTCAGAATTTTTGGTTGTGAAGAAGAAGAATAAACGTTATTGCCCTGTATATTTCTCTAAGGAAGATATTGAACAGGAACTATCTAAGGTTTCCAGGGTATCTAAAAGTCCTGGAGTTTCCAAGCAAATAATGGTTGGTAGCTTCGAAGATGTACTGAAAAAAATGGAGATGAGTGAAAAGAATTCCGGATGGGATGATTTGATTTTTATTCCCCCTGGAAAAAGCCGTTCTCAACATATACAAGAAATTAAGGCTTAA

Protein sequence

>Msa0500610

MESQGQWNPLLSFSRFIHQHCNHLATRFEDTKKLAGTLIQSHTRTNPAFAAALTSNNVAKSLAGTSVYTVSSSNNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVRSRKNEFRGNAKVVPITLEQVYLLKVEGIAFRFLPDPLQIRNALELRAASKEGFDGVPVFQSEFLVVKKKNKRYCPVYFSKEDIEQELSKVSRVSKSPGVSKQIMVGSFEDVLKKMEMSEKNSGWDDLIFIPPGKSRSQHIQEIKA*