Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627750 | XP_013454668.1 | 94.776 | 268 | 11 | 2 | 1 | 266 | 1 | 267 | 6.25e-167 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627750 | sp|Q9FUZ0|DEF1A_SOLLC | 67.544 | 228 | 69 | 1 | 37 | 264 | 53 | 275 | 2.46e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627750 | A0A072UG23 | 94.776 | 268 | 11 | 2 | 1 | 266 | 1 | 267 | 2.98e-167 | 472 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0627750 | 0.808524 | 2.968788e-50 | -8.615850e-47 |
| Msa0044700 | Msa0627750 | 0.800342 | 1.507521e-48 | -8.615850e-47 |
| Msa0060710 | Msa0627750 | 0.801937 | 7.114563e-49 | -8.615850e-47 |
| Msa0064490 | Msa0627750 | 0.802073 | 6.670989e-49 | -8.615850e-47 |
| Msa0075080 | Msa0627750 | 0.819735 | 9.937429e-53 | -8.615850e-47 |
| Msa0085470 | Msa0627750 | 0.819557 | 1.091256e-52 | -8.615850e-47 |
| Msa0095890 | Msa0627750 | 0.810801 | 9.623404e-51 | -8.615850e-47 |
| Msa0627750 | Msa0628440 | 0.810010 | 1.425802e-50 | -8.615850e-47 |
| Msa0627750 | Msa0713570 | 0.802510 | 5.422690e-49 | -8.615850e-47 |
| Msa0627750 | Msa0753590 | 0.816806 | 4.574326e-52 | -8.615850e-47 |
| Msa0627750 | Msa0755550 | 0.808172 | 3.528881e-50 | -8.615850e-47 |
| Msa0627750 | Msa0833200 | 0.810735 | 9.942513e-51 | -8.615850e-47 |
| Msa0627750 | Msa0833980 | 0.811748 | 5.995522e-51 | -8.615850e-47 |
| Msa0627750 | Msa0881880 | 0.804560 | 2.037276e-49 | -8.615850e-47 |
| Msa0627750 | Msa0888460 | 0.800404 | 1.464523e-48 | -8.615850e-47 |
| Msa0627750 | Msa0941420 | 0.801661 | 8.105391e-49 | -8.615850e-47 |
| Msa0627750 | Msa0978540 | 0.804302 | 2.306027e-49 | -8.615850e-47 |
| Msa0627750 | Msa1080610 | 0.813386 | 2.627468e-51 | -8.615850e-47 |
| Msa0627750 | Msa1080680 | 0.814275 | 1.673500e-51 | -8.615850e-47 |
| Msa0627750 | Msa1126320 | 0.827671 | 1.375415e-54 | -8.615850e-47 |
| Msa0627750 | Msa1131300 | 0.808370 | 3.202502e-50 | -8.615850e-47 |
| Msa0627750 | Msa1137210 | -0.802477 | 5.508274e-49 | -8.615850e-47 |
| Msa0627750 | Msa1164720 | 0.819699 | 1.012743e-52 | -8.615850e-47 |
| Msa0627750 | Msa1167150 | 0.812204 | 4.769654e-51 | -8.615850e-47 |
| Msa0627750 | Msa1203320 | 0.803797 | 2.936966e-49 | -8.615850e-47 |
| Msa0627750 | Msa1233810 | -0.804398 | 2.202536e-49 | -8.615850e-47 |
| Msa0627750 | Msa1303690 | 0.804258 | 2.354920e-49 | -8.615850e-47 |
| Msa0627750 | Msa1325560 | 0.818204 | 2.214853e-52 | -8.615850e-47 |
| Msa0627750 | Msa1350550 | 0.804061 | 2.587805e-49 | -8.615850e-47 |
| Msa0627750 | Msa1363170 | 0.806040 | 9.976234e-50 | -8.615850e-47 |
| Msa0627750 | Msa1376680 | 0.810359 | 1.199090e-50 | -8.615850e-47 |
| Msa0627750 | Msa1388010 | 0.814194 | 1.744644e-51 | -8.615850e-47 |
| Msa0627750 | Msa1400830 | 0.806790 | 6.930621e-50 | -8.615850e-47 |
| Msa0627750 | Msa1403590 | 0.803875 | 2.829301e-49 | -8.615850e-47 |
| Msa0627750 | Msa1411930 | 0.806658 | 7.391041e-50 | -8.615850e-47 |
| Msa0627750 | Msa1412330 | 0.809304 | 2.021293e-50 | -8.615850e-47 |
| Msa0627750 | Msa1440990 | 0.809745 | 1.625445e-50 | -8.615850e-47 |
| Msa0627750 | Msa1462700 | 0.801238 | 9.896430e-49 | -8.615850e-47 |
| Msa0122930 | Msa0627750 | 0.826315 | 2.902612e-54 | -8.615850e-47 |
| Msa0138680 | Msa0627750 | 0.819175 | 1.333399e-52 | -8.615850e-47 |
| Msa0145590 | Msa0627750 | 0.815726 | 7.974064e-52 | -8.615850e-47 |
| Msa0162170 | Msa0627750 | 0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa0167570 | Msa0627750 | 0.825549 | 4.411845e-54 | -8.615850e-47 |
| Msa0177640 | Msa0627750 | 0.810934 | 9.003926e-51 | -8.615850e-47 |
| Msa0372570 | Msa0627750 | 0.821066 | 4.918124e-53 | -8.615850e-47 |
| Msa0382050 | Msa0627750 | 0.817386 | 3.387178e-52 | -8.615850e-47 |
| Msa0415060 | Msa0627750 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
| Msa0417790 | Msa0627750 | 0.802373 | 5.786956e-49 | -8.615850e-47 |
| Msa0420810 | Msa0627750 | 0.813244 | 2.823561e-51 | -8.615850e-47 |
| Msa0431270 | Msa0627750 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0431550 | Msa0627750 | 0.823472 | 1.359978e-53 | -8.615850e-47 |
| Msa0444770 | Msa0627750 | 0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0449500 | Msa0627750 | -0.812997 | 3.198556e-51 | -8.615850e-47 |
| Msa0467070 | Msa0627750 | 0.829616 | 4.660407e-55 | -8.615850e-47 |
| Msa0470330 | Msa0627750 | 0.802750 | 4.837189e-49 | -8.615850e-47 |
| Msa0474630 | Msa0627750 | 0.808872 | 2.501234e-50 | -8.615850e-47 |
| Msa0476560 | Msa0627750 | 0.816234 | 6.143032e-52 | -8.615850e-47 |
| Msa0241940 | Msa0627750 | 0.802244 | 6.151828e-49 | -8.615850e-47 |
| Msa0307820 | Msa0627750 | 0.805979 | 1.027445e-49 | -8.615850e-47 |
| Msa0492330 | Msa0627750 | 0.828670 | 7.902708e-55 | -8.615850e-47 |
| Msa0497680 | Msa0627750 | -0.808638 | 2.806918e-50 | -8.615850e-47 |
| Msa0512950 | Msa0627750 | 0.829735 | 4.358235e-55 | -8.615850e-47 |
| Msa0519100 | Msa0627750 | 0.812996 | 3.200590e-51 | -8.615850e-47 |
| Msa0520550 | Msa0627750 | 0.840589 | 7.937753e-58 | -8.615850e-47 |
| Msa0530720 | Msa0627750 | 0.901246 | 3.252911e-78 | -8.615850e-47 |
| Msa0531270 | Msa0627750 | 0.805968 | 1.033100e-49 | -8.615850e-47 |
| Msa0572880 | Msa0627750 | 0.847336 | 1.233308e-59 | -8.615850e-47 |
| Msa0587550 | Msa0627750 | 0.841847 | 3.705706e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627750 | MtrunA17_Chr4g0003601 | 94.776 | 268 | 11 | 2 | 1 | 266 | 1 | 267 | 5.75e-171 | 472 |
| Msa0627750 | MtrunA17_Chr2g0332821 | 69.068 | 236 | 56 | 3 | 31 | 266 | 38 | 256 | 3.54e-109 | 315 |
| Msa0627750 | MtrunA17_Chr2g0332811 | 68.254 | 189 | 60 | 0 | 71 | 259 | 72 | 260 | 4.20e-89 | 265 |
| Msa0627750 | MtrunA17_Chr7g0228371 | 30.622 | 209 | 123 | 4 | 42 | 249 | 28 | 215 | 2.17e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627750 | AT1G15390.1 | 72.038 | 211 | 55 | 1 | 56 | 266 | 63 | 269 | 1.24e-110 | 320 |
| Msa0627750 | AT5G14660.1 | 33.728 | 169 | 95 | 3 | 81 | 249 | 84 | 235 | 4.12e-23 | 95.5 |
| Msa0627750 | AT5G14660.3 | 33.728 | 169 | 95 | 3 | 81 | 249 | 84 | 235 | 4.12e-23 | 95.5 |
| Msa0627750 | AT5G14660.2 | 33.728 | 169 | 95 | 3 | 81 | 249 | 84 | 235 | 4.12e-23 | 95.5 |
Find 87 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGATAAGGGTGGGTTTA+TGG | 0.136478 | 4_3:+8184567 | None:intergenic |
| GCCCTCGGTAACGCATGTTT+TGG | 0.233533 | 4_3:-8180892 | Msa0627750:exon |
| CTCAGATTGGAGTTTCTTCT+AGG | 0.243478 | 4_3:-8184139 | Msa0627750:CDS |
| GAAAATGGTGATAGAGATAA+TGG | 0.253015 | 4_3:+8184431 | None:intergenic |
| GGCATAACTAATAAATTCTT+TGG | 0.259044 | 4_3:+8182112 | None:intergenic |
| CACTATGCAGATAATTGTTT+TGG | 0.265370 | 4_3:-8182141 | Msa0627750:intron |
| TTTCCATGATAAGTCGTTTC+AGG | 0.267339 | 4_3:-8180684 | Msa0627750:three_prime_UTR |
| CACCTTGACGTTGAAGTTAC+AGG | 0.267498 | 4_3:-8181091 | Msa0627750:CDS |
| GAGCTATGAGCACTTCCTTT+GGG | 0.276369 | 4_3:+8182090 | None:intergenic |
| GTTACCGAGGGCCAAGTTTC+GGG | 0.283852 | 4_3:+8180903 | None:intergenic |
| TCTACGGTTCTGAAAGTTCT+AGG | 0.285952 | 4_3:+8180956 | None:intergenic |
| CACGATAAGGGTGGGTTTAT+GGG | 0.287396 | 4_3:+8184568 | None:intergenic |
| TTCAGTGTTAAATATTATAC+TGG | 0.295687 | 4_3:-8180656 | Msa0627750:three_prime_UTR |
| AAATTATTGATGATATGATT+AGG | 0.316488 | 4_3:-8184199 | Msa0627750:CDS |
| ATTTCTAAAATATTTGAATC+TGG | 0.326035 | 4_3:+8180779 | None:intergenic |
| CACATTCATGTTGTAAAATC+CGG | 0.342414 | 4_3:+8181017 | None:intergenic |
| CCAATCAAAATAACTGCTTC+TGG | 0.342745 | 4_3:-8181049 | Msa0627750:CDS |
| TCACCAGCTTTAACAGTATC+AGG | 0.343078 | 4_3:+8184287 | None:intergenic |
| CGTTACCGAGGGCCAAGTTT+CGG | 0.344854 | 4_3:+8180902 | None:intergenic |
| AATTATTGATGATATGATTA+GGG | 0.344880 | 4_3:-8184198 | Msa0627750:CDS |
| TGAGCTATGAGCACTTCCTT+TGG | 0.361255 | 4_3:+8182089 | None:intergenic |
| CTGCTTCTGGTTGGCAGGCC+CGG | 0.375678 | 4_3:-8181036 | Msa0627750:CDS |
| CATGGACCTGCCTCTTGCTC+AGG | 0.377726 | 4_3:-8180930 | Msa0627750:CDS |
| TATAATGCAATGACATAATT+CGG | 0.379896 | 4_3:+8180714 | None:intergenic |
| GGTTTAGCTGCTCCTCAGAT+TGG | 0.386408 | 4_3:-8184152 | Msa0627750:CDS |
| TGAGCAGGTTCATGAAGAAC+AGG | 0.394698 | 4_3:+8184263 | None:intergenic |
| GATGATAAGGTTAAAGTTAA+CGG | 0.404236 | 4_3:+8184398 | None:intergenic |
| TTTGCTCGTACTCTTCAGCC+TGG | 0.404432 | 4_3:+8181917 | None:intergenic |
| TGACGTTGAAGTTACAGGTT+TGG | 0.412939 | 4_3:-8181086 | Msa0627750:CDS |
| TCTGTAAGAAAATCACGATA+AGG | 0.419805 | 4_3:+8184555 | None:intergenic |
| AAAATGGTGATAGAGATAAT+GGG | 0.423760 | 4_3:+8184432 | None:intergenic |
| ATGATATGATTAGGGTTATG+AGG | 0.426883 | 4_3:-8184190 | Msa0627750:CDS |
| GAAACGACTTATCATGGAAA+AGG | 0.427241 | 4_3:+8180687 | None:intergenic |
| CGTTGCTGCTGCCTCTGATA+AGG | 0.430902 | 4_3:-8180867 | Msa0627750:three_prime_UTR |
| GCTCAGGGATGCCCGAAACT+TGG | 0.436382 | 4_3:-8180914 | Msa0627750:CDS |
| TTGCCTGAAACGACTTATCA+TGG | 0.447929 | 4_3:+8180681 | None:intergenic |
| CTAGCATTAAAGCTGAGAAA+TGG | 0.449740 | 4_3:+8180590 | None:intergenic |
| AATAACTGCTTCTGGTTGGC+AGG | 0.461517 | 4_3:-8181041 | Msa0627750:CDS |
| GAACATACCAAAAGATCAAA+AGG | 0.463797 | 4_3:+8182056 | None:intergenic |
| AGCAGTTTGAGAAGATGATA+AGG | 0.466917 | 4_3:+8184385 | None:intergenic |
| AAGGTTAAAGTTAACGGTGG+TGG | 0.467384 | 4_3:+8184404 | None:intergenic |
| TCAGATTGGAGTTTCTTCTA+GGG | 0.471837 | 4_3:-8184138 | Msa0627750:intron |
| CTATGGAAGCTTTACACTTA+CGG | 0.473557 | 4_3:-8184511 | Msa0627750:CDS |
| GGCATCCCTGAGCAAGAGGC+AGG | 0.481807 | 4_3:+8180924 | None:intergenic |
| AACTCTATATGTTGATAAGA+TGG | 0.483415 | 4_3:-8180981 | Msa0627750:CDS |
| CTAGGATCAACTTCTTGAGC+AGG | 0.493700 | 4_3:+8184248 | None:intergenic |
| ATGAGGAAAGCTCCTGGTGT+TGG | 0.494343 | 4_3:-8184173 | Msa0627750:CDS |
| GGCTGAAGAGTACGAGCAAA+AGG | 0.512028 | 4_3:-8181914 | Msa0627750:CDS |
| CTGTAAGAAAATCACGATAA+GGG | 0.516073 | 4_3:+8184556 | None:intergenic |
| TTGCCTGATACTGTTAAAGC+TGG | 0.517276 | 4_3:-8184290 | Msa0627750:CDS |
| TATTCAGAAAATGAAGGCTA+TGG | 0.517748 | 4_3:-8184528 | Msa0627750:exon |
| TTGCTCGTACTCTTCAGCCT+GGG | 0.529092 | 4_3:+8181918 | None:intergenic |
| AAACGACTTATCATGGAAAA+GGG | 0.533289 | 4_3:+8180688 | None:intergenic |
| ATAATTCGGCATACAAAATG+AGG | 0.542585 | 4_3:+8180728 | None:intergenic |
| ACAACATGAATGTGATCACT+TGG | 0.545261 | 4_3:-8181008 | Msa0627750:CDS |
| CATGAATGTGATCACTTGGA+TGG | 0.545479 | 4_3:-8181004 | Msa0627750:CDS |
| ACATTCATGTTGTAAAATCC+GGG | 0.546437 | 4_3:+8181018 | None:intergenic |
| GAGAGATATTCAGAAAATGA+AGG | 0.546950 | 4_3:-8184534 | Msa0627750:exon |
| AGCTATGAGCACTTCCTTTG+GGG | 0.558890 | 4_3:+8182091 | None:intergenic |
| TCAAAATAACTGCTTCTGGT+TGG | 0.559785 | 4_3:-8181045 | Msa0627750:CDS |
| TTTCAGAACCGTAGAAAACA+TGG | 0.567140 | 4_3:-8180948 | Msa0627750:CDS |
| TCTGATAAGGCTGTCAACAC+AGG | 0.580727 | 4_3:-8180854 | Msa0627750:three_prime_UTR |
| ATGGACCTGCCTCTTGCTCA+GGG | 0.581868 | 4_3:-8180929 | Msa0627750:CDS |
| TTCGGGCATCCCTGAGCAAG+AGG | 0.582488 | 4_3:+8180920 | None:intergenic |
| AAGAAAATCACGATAAGGGT+GGG | 0.586340 | 4_3:+8184560 | None:intergenic |
| TTATCAGACATTATCTCACT+AGG | 0.592235 | 4_3:+8184230 | None:intergenic |
| CAAAATGAGGCAGATTTCAT+CGG | 0.592454 | 4_3:+8180741 | None:intergenic |
| TGCAGGTGATCGTGAATCCC+AGG | 0.596578 | 4_3:-8181935 | Msa0627750:intron |
| TGATGGATTTAGAGCTGTGG+TGG | 0.598884 | 4_3:-8181119 | Msa0627750:CDS |
| AGGGTTATGAGGAAAGCTCC+TGG | 0.599633 | 4_3:-8184179 | Msa0627750:CDS |
| ATTTATTAGTTATGCCCCAA+AGG | 0.600743 | 4_3:-8182105 | Msa0627750:CDS |
| TAAGAAAATCACGATAAGGG+TGG | 0.602629 | 4_3:+8184559 | None:intergenic |
| GATGCCCGAAACTTGGCCCT+CGG | 0.604972 | 4_3:-8180907 | Msa0627750:CDS |
| AAACTGCTACTGTAAGAACA+AGG | 0.615173 | 4_3:-8184370 | Msa0627750:CDS |
| GCTACTGTAAGAACAAGGGC+AGG | 0.619022 | 4_3:-8184365 | Msa0627750:CDS |
| TCCCAAAACATGCGTTACCG+AGG | 0.619446 | 4_3:+8180890 | None:intergenic |
| AACCTGTAACTTCAACGTCA+AGG | 0.623085 | 4_3:+8181089 | None:intergenic |
| CCCAAAACATGCGTTACCGA+GGG | 0.627876 | 4_3:+8180891 | None:intergenic |
| TGTTGATGGATTTAGAGCTG+TGG | 0.633917 | 4_3:-8181122 | Msa0627750:CDS |
| GTTACAGGTTTGGATCGCAA+TGG | 0.637881 | 4_3:-8181076 | Msa0627750:CDS |
| GATAAGGTTAAAGTTAACGG+TGG | 0.652717 | 4_3:+8184401 | None:intergenic |
| CTAGAAGAAACTCCAATCTG+AGG | 0.652902 | 4_3:+8184140 | None:intergenic |
| AAATGGTGATAGAGATAATG+GGG | 0.673193 | 4_3:+8184433 | None:intergenic |
| AACTGCTACTGTAAGAACAA+GGG | 0.673682 | 4_3:-8184369 | Msa0627750:CDS |
| GGAGCAGCTAAACCAACACC+AGG | 0.676457 | 4_3:+8184161 | None:intergenic |
| TGTGTTGACAGCCTTATCAG+AGG | 0.687663 | 4_3:+8180856 | None:intergenic |
| GAGCAGGTTCATGAAGAACA+GGG | 0.696995 | 4_3:+8184264 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTTTATCTTAAATTAT+TGG | + | chr4_3:8181566-8181585 | None:intergenic | 10.0% |
| !! | AATACATATATATAATTCAT+TGG | - | chr4_3:8183186-8183205 | Msa0627750:intron | 10.0% |
| !!! | AAATTATTGATGATATGATT+AGG | - | chr4_3:8180954-8180973 | Msa0627750:CDS | 15.0% |
| !!! | AATTATTGATGATATGATTA+GGG | - | chr4_3:8180955-8180974 | Msa0627750:CDS | 15.0% |
| !!! | TTTGAAATTTAGTTAATTTC+AGG | - | chr4_3:8182591-8182610 | Msa0627750:intron | 15.0% |
| !! | TCAAATTACTTTCAATTTAT+AGG | + | chr4_3:8182972-8182991 | None:intergenic | 15.0% |
| !! | AAATTTCTTAGATTAAAAGA+GGG | + | chr4_3:8183418-8183437 | None:intergenic | 15.0% |
| !! | GATTATTATTTATTGCTTAA+TGG | - | chr4_3:8183772-8183791 | Msa0627750:intron | 15.0% |
| !! | TATGAATTTATTAAAGTACA+GGG | + | chr4_3:8183866-8183885 | None:intergenic | 15.0% |
| !!! | ATTTCTAAAATATTTGAATC+TGG | + | chr4_3:8184377-8184396 | None:intergenic | 15.0% |
| !!! | TAAACATGTTTTTATAAGTG+GGG | + | chr4_3:8181169-8181188 | None:intergenic | 20.0% |
| !!! | CTAAACATGTTTTTATAAGT+GGG | + | chr4_3:8181170-8181189 | None:intergenic | 20.0% |
| !!! | TCTAAACATGTTTTTATAAG+TGG | + | chr4_3:8181171-8181190 | None:intergenic | 20.0% |
| !!! | AATAATTGTTAGTCTCATAT+CGG | + | chr4_3:8181202-8181221 | None:intergenic | 20.0% |
| !! | TAAAGTTAGTTAACAAAGTT+CGG | - | chr4_3:8181292-8181311 | Msa0627750:intron | 20.0% |
| !!! | TTTTTTCTCTATCACTAAAA+TGG | + | chr4_3:8181359-8181378 | None:intergenic | 20.0% |
| !! | ATATGACTGATACATATAAA+AGG | + | chr4_3:8181724-8181743 | None:intergenic | 20.0% |
| !!! | TATTTGATTTTGAAATTGCA+GGG | - | chr4_3:8181890-8181909 | Msa0627750:CDS | 20.0% |
| !! | TATTTGAACTTCAATTCAAA+TGG | + | chr4_3:8182796-8182815 | None:intergenic | 20.0% |
| !! | AATTGAAAGTAATTTGAACT+TGG | - | chr4_3:8182975-8182994 | Msa0627750:intron | 20.0% |
| !!! | ATATTTACTTTTTGTCGTAA+AGG | - | chr4_3:8183152-8183171 | Msa0627750:intron | 20.0% |
| !! | CAAATTTCTTAGATTAAAAG+AGG | + | chr4_3:8183419-8183438 | None:intergenic | 20.0% |
| !! | ATTCCGTATTTCAAATTAAT+CGG | + | chr4_3:8183657-8183676 | None:intergenic | 20.0% |
| !!! | CTTTGAAACAATTGTTTATA+TGG | + | chr4_3:8183739-8183758 | None:intergenic | 20.0% |
| !! | CTATGAATTTATTAAAGTAC+AGG | + | chr4_3:8183867-8183886 | None:intergenic | 20.0% |
| !! | ATAACAATTGAACATGTTAA+TGG | + | chr4_3:8183997-8184016 | None:intergenic | 20.0% |
| !! | TATAATGCAATGACATAATT+CGG | + | chr4_3:8184442-8184461 | None:intergenic | 20.0% |
| !! | TTCAGTGTTAAATATTATAC+TGG | - | chr4_3:8184497-8184516 | Msa0627750:CDS | 20.0% |
| !! | TTATACTGGAAAAATTTCTT+AGG | - | chr4_3:8184511-8184530 | Msa0627750:CDS | 20.0% |
| ! | AAAATGGTGATAGAGATAAT+GGG | + | chr4_3:8180724-8180743 | None:intergenic | 25.0% |
| ! | GATGATAAGGTTAAAGTTAA+CGG | + | chr4_3:8180758-8180777 | None:intergenic | 25.0% |
| ! | TTAACTAATCCTTACAAAAC+CGG | - | chr4_3:8181130-8181149 | Msa0627750:intron | 25.0% |
| !!! | AAACATGTTTTTATAAGTGG+GGG | + | chr4_3:8181168-8181187 | None:intergenic | 25.0% |
| !! | TACTTTGTAATCTAAGACAT+AGG | + | chr4_3:8181327-8181346 | None:intergenic | 25.0% |
| ! | TTAGTGATAGAGAAAAAAGT+AGG | - | chr4_3:8181361-8181380 | Msa0627750:intron | 25.0% |
| ! | TAGTGATAGAGAAAAAAGTA+GGG | - | chr4_3:8181362-8181381 | Msa0627750:intron | 25.0% |
| ! | TATCATCATCATCATTATCA+TGG | - | chr4_3:8181831-8181850 | Msa0627750:intron | 25.0% |
| !!! | CTATTTGATTTTGAAATTGC+AGG | - | chr4_3:8181889-8181908 | Msa0627750:CDS | 25.0% |
| !! | TAATGAGTTGGATGTAAATA+TGG | - | chr4_3:8182380-8182399 | Msa0627750:intron | 25.0% |
| !! | GATGTAAATATGGTTTTTGA+TGG | - | chr4_3:8182390-8182409 | Msa0627750:intron | 25.0% |
| !!! | TTGTACTAGTCTTTTTGAAT+AGG | - | chr4_3:8182480-8182499 | Msa0627750:intron | 25.0% |
| ! | AAGGACTAAATTGACTAAAT+TGG | - | chr4_3:8182648-8182667 | Msa0627750:intron | 25.0% |
| !! | TTATTCCTTTATTTGAAGTG+TGG | + | chr4_3:8182741-8182760 | None:intergenic | 25.0% |
| ! | CTTCAAATAAAGGAATAAGA+AGG | - | chr4_3:8182743-8182762 | Msa0627750:intron | 25.0% |
| ! | GAAAATTGAAAGTGAATTTG+TGG | - | chr4_3:8182909-8182928 | Msa0627750:intron | 25.0% |
| ! | GGCATAACTAATAAATTCTT+TGG | + | chr4_3:8183044-8183063 | None:intergenic | 25.0% |
| !!! | ATATCATGATTTGTCCTTTT+CGG | - | chr4_3:8183293-8183312 | Msa0627750:intron | 25.0% |
| ! | GAACAAGTAAATGAATAGTT+AGG | + | chr4_3:8183353-8183372 | None:intergenic | 25.0% |
| !! | TTCCCGATTAATTTGAAATA+CGG | - | chr4_3:8183651-8183670 | Msa0627750:intron | 25.0% |
| ! | TTCCGTATTTCAAATTAATC+GGG | + | chr4_3:8183656-8183675 | None:intergenic | 25.0% |
| ! | CATTGTATGAAATGTCAAAT+TGG | + | chr4_3:8183713-8183732 | None:intergenic | 25.0% |
| ! | TGAAACAATTGTTTATATGG+AGG | + | chr4_3:8183736-8183755 | None:intergenic | 25.0% |
| ! | TTGTATGTGAAAGAAAGTAA+TGG | + | chr4_3:8183808-8183827 | None:intergenic | 25.0% |
| !! | CATAGTAGTTTGATAATTTC+CGG | - | chr4_3:8183882-8183901 | Msa0627750:intron | 25.0% |
| !! | AACTCTATATGTTGATAAGA+TGG | - | chr4_3:8184172-8184191 | Msa0627750:CDS | 25.0% |
| CTGTAAGAAAATCACGATAA+GGG | + | chr4_3:8180600-8180619 | None:intergenic | 30.0% | |
| TCTGTAAGAAAATCACGATA+AGG | + | chr4_3:8180601-8180620 | None:intergenic | 30.0% | |
| GAGAGATATTCAGAAAATGA+AGG | - | chr4_3:8180619-8180638 | Msa0627750:three_prime_UTR | 30.0% | |
| TATTCAGAAAATGAAGGCTA+TGG | - | chr4_3:8180625-8180644 | Msa0627750:three_prime_UTR | 30.0% | |
| !!! | AAAGAGAGAGTTTTTGGTTA+TGG | + | chr4_3:8180684-8180703 | None:intergenic | 30.0% |
| ! | AAGTGTAAAGAGAGAGTTTT+TGG | + | chr4_3:8180690-8180709 | None:intergenic | 30.0% |
| AAATGGTGATAGAGATAATG+GGG | + | chr4_3:8180723-8180742 | None:intergenic | 30.0% | |
| GAAAATGGTGATAGAGATAA+TGG | + | chr4_3:8180725-8180744 | None:intergenic | 30.0% | |
| TTATCAGACATTATCTCACT+AGG | + | chr4_3:8180926-8180945 | None:intergenic | 30.0% | |
| ATGATATGATTAGGGTTATG+AGG | - | chr4_3:8180963-8180982 | Msa0627750:CDS | 30.0% | |
| TTAGTCTCATATCGGAAAAA+TGG | + | chr4_3:8181194-8181213 | None:intergenic | 30.0% | |
| TGATTAAACGTAACCATATG+AGG | - | chr4_3:8181582-8181601 | Msa0627750:intron | 30.0% | |
| GATTAAACGTAACCATATGA+GGG | - | chr4_3:8181583-8181602 | Msa0627750:intron | 30.0% | |
| ATTAAACGTAACCATATGAG+GGG | - | chr4_3:8181584-8181603 | Msa0627750:intron | 30.0% | |
| CCATATGAAAAAGACTAGTA+TGG | + | chr4_3:8181983-8182002 | None:intergenic | 30.0% | |
| !!! | CCATACTAGTCTTTTTCATA+TGG | - | chr4_3:8181980-8181999 | Msa0627750:intron | 30.0% |
| !! | CGCTTAATTTATTTTCGTGT+TGG | + | chr4_3:8182095-8182114 | None:intergenic | 30.0% |
| ! | TCTACCATCTTTTCAACTAT+AGG | + | chr4_3:8182210-8182229 | None:intergenic | 30.0% |
| TCAGAGACGAGATAATTTAA+GGG | + | chr4_3:8182519-8182538 | None:intergenic | 30.0% | |
| TTCAGAGACGAGATAATTTA+AGG | + | chr4_3:8182520-8182539 | None:intergenic | 30.0% | |
| TGAGAATGCTCTACAATTTA+AGG | - | chr4_3:8182629-8182648 | Msa0627750:intron | 30.0% | |
| TGATCTACTCGATATATTGA+AGG | - | chr4_3:8182671-8182690 | Msa0627750:intron | 30.0% | |
| TGTTACCACACTTCAAATAA+AGG | - | chr4_3:8182733-8182752 | Msa0627750:intron | 30.0% | |
| GCTTATGACAACTATAATGT+TGG | - | chr4_3:8182887-8182906 | Msa0627750:intron | 30.0% | |
| ! | CACTATGCAGATAATTGTTT+TGG | - | chr4_3:8183012-8183031 | Msa0627750:intron | 30.0% |
| ATTTATTAGTTATGCCCCAA+AGG | - | chr4_3:8183048-8183067 | Msa0627750:intron | 30.0% | |
| ! | TAGACATCCTTTTGATCTTT+TGG | - | chr4_3:8183090-8183109 | Msa0627750:intron | 30.0% |
| GAACATACCAAAAGATCAAA+AGG | + | chr4_3:8183100-8183119 | None:intergenic | 30.0% | |
| !! | TACTTTTTGTCGTAAAGGTT+CGG | - | chr4_3:8183157-8183176 | Msa0627750:intron | 30.0% |
| TTACTTGTGTTGTCTAATAG+CGG | - | chr4_3:8183460-8183479 | Msa0627750:intron | 30.0% | |
| CAAATTAATCGGGAAAAAGT+GGG | + | chr4_3:8183646-8183665 | None:intergenic | 30.0% | |
| TCAAATTAATCGGGAAAAAG+TGG | + | chr4_3:8183647-8183666 | None:intergenic | 30.0% | |
| AGCATAAGCAGATTAATATC+CGG | + | chr4_3:8183904-8183923 | None:intergenic | 30.0% | |
| TTAATCTGCTTATGCTTAGA+TGG | - | chr4_3:8183908-8183927 | Msa0627750:intron | 30.0% | |
| !! | ATAACATTTTGCAGTGTTGA+TGG | - | chr4_3:8184017-8184036 | Msa0627750:intron | 30.0% |
| ACATTCATGTTGTAAAATCC+GGG | + | chr4_3:8184138-8184157 | None:intergenic | 30.0% | |
| CACATTCATGTTGTAAAATC+CGG | + | chr4_3:8184139-8184158 | None:intergenic | 30.0% | |
| ! | TTGAATCTGGTCTCAATTTT+AGG | + | chr4_3:8184364-8184383 | None:intergenic | 30.0% |
| ATAATTCGGCATACAAAATG+AGG | + | chr4_3:8184428-8184447 | None:intergenic | 30.0% | |
| AAACGACTTATCATGGAAAA+GGG | + | chr4_3:8184468-8184487 | None:intergenic | 30.0% | |
| AAAAATTTCTTAGGTCTGCA+AGG | - | chr4_3:8184520-8184539 | Msa0627750:CDS | 30.0% | |
| AAGAAAATCACGATAAGGGT+GGG | + | chr4_3:8180596-8180615 | None:intergenic | 35.0% | |
| TAAGAAAATCACGATAAGGG+TGG | + | chr4_3:8180597-8180616 | None:intergenic | 35.0% | |
| CTATGGAAGCTTTACACTTA+CGG | - | chr4_3:8180642-8180661 | Msa0627750:three_prime_UTR | 35.0% | |
| !!! | GAGTTTTTGGTTATGGATAG+TGG | + | chr4_3:8180677-8180696 | None:intergenic | 35.0% |
| GATAAGGTTAAAGTTAACGG+TGG | + | chr4_3:8180755-8180774 | None:intergenic | 35.0% | |
| AGCAGTTTGAGAAGATGATA+AGG | + | chr4_3:8180771-8180790 | None:intergenic | 35.0% | |
| AAACTGCTACTGTAAGAACA+AGG | - | chr4_3:8180783-8180802 | Msa0627750:three_prime_UTR | 35.0% | |
| AACTGCTACTGTAAGAACAA+GGG | - | chr4_3:8180784-8180803 | Msa0627750:three_prime_UTR | 35.0% | |
| !!! | ACAAGGGCAGGTTTTTTTTT+TGG | - | chr4_3:8180800-8180819 | Msa0627750:three_prime_UTR | 35.0% |
| TCAGATTGGAGTTTCTTCTA+GGG | - | chr4_3:8181015-8181034 | Msa0627750:CDS | 35.0% | |
| CAATGTGAAATTGAGCAAGA+AGG | + | chr4_3:8181230-8181249 | None:intergenic | 35.0% | |
| ! | ATCTAAGACATAGGCGAAAT+TGG | + | chr4_3:8181318-8181337 | None:intergenic | 35.0% |
| ATCATGTCTAGTGTCTATGT+CGG | + | chr4_3:8181519-8181538 | None:intergenic | 35.0% | |
| ATAGACACTAGACATGATTC+TGG | - | chr4_3:8181521-8181540 | Msa0627750:intron | 35.0% | |
| TGTTGTCATGTGACTGAAAA+TGG | - | chr4_3:8181631-8181650 | Msa0627750:intron | 35.0% | |
| GTTGTCATGTGACTGAAAAT+GGG | - | chr4_3:8181632-8181651 | Msa0627750:intron | 35.0% | |
| GATACATATAAAAGGCAAGC+TGG | + | chr4_3:8181716-8181735 | None:intergenic | 35.0% | |
| GTATCAGTCATATGTATGAG+TGG | - | chr4_3:8181731-8181750 | Msa0627750:intron | 35.0% | |
| CATATGTATGAGTGGTATGT+CGG | - | chr4_3:8181739-8181758 | Msa0627750:intron | 35.0% | |
| ! | AGCCGAAGGTAAAATTTTAC+CGG | - | chr4_3:8182015-8182034 | Msa0627750:intron | 35.0% |
| ! | GTCCGGTAAAATTTTACCTT+CGG | + | chr4_3:8182020-8182039 | None:intergenic | 35.0% |
| ! | TCGATAGTCTTACAATTGTC+CGG | + | chr4_3:8182037-8182056 | None:intergenic | 35.0% |
| GTAAGACTATCGATGTTGTA+CGG | - | chr4_3:8182044-8182063 | Msa0627750:intron | 35.0% | |
| GTTGTACGGACATAGAATAT+TGG | - | chr4_3:8182058-8182077 | Msa0627750:intron | 35.0% | |
| ACAACATTAGAGAGAGAGTT+GGG | - | chr4_3:8182178-8182197 | Msa0627750:intron | 35.0% | |
| AGCACCTATAGTTGAAAAGA+TGG | - | chr4_3:8182203-8182222 | Msa0627750:intron | 35.0% | |
| AGATGGTAGAAACTAGACTT+AGG | - | chr4_3:8182220-8182239 | Msa0627750:intron | 35.0% | |
| AAACTAGACTTAGGTGGTTT+AGG | - | chr4_3:8182229-8182248 | Msa0627750:intron | 35.0% | |
| AACTTGTGGATTCTGTAGTT+AGG | - | chr4_3:8182265-8182284 | Msa0627750:intron | 35.0% | |
| !!! | GGTTCTCTTATGCTTTTTCT+AGG | + | chr4_3:8182339-8182358 | None:intergenic | 35.0% |
| CATAAGAGAACCTATCAAGA+AGG | - | chr4_3:8182347-8182366 | Msa0627750:intron | 35.0% | |
| ATCTCTAGATCCTTCTTGAT+AGG | + | chr4_3:8182360-8182379 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | - | chr4_3:8182368-8182387 | Msa0627750:intron | 35.0% | |
| ! | TGGTTTTTGATGGAGCAATA+CGG | - | chr4_3:8182400-8182419 | Msa0627750:intron | 35.0% |
| TCGATATATTGAAGGAGCTA+AGG | - | chr4_3:8182679-8182698 | Msa0627750:intron | 35.0% | |
| ATTGAAGGAGCTAAGGTAAT+TGG | - | chr4_3:8182686-8182705 | Msa0627750:intron | 35.0% | |
| TAAGAAGGAAACGAAGCAAA+AGG | - | chr4_3:8182758-8182777 | Msa0627750:intron | 35.0% | |
| AAGAAGGAAACGAAGCAAAA+GGG | - | chr4_3:8182759-8182778 | Msa0627750:intron | 35.0% | |
| ! | ATTTTGTTAACGCTGAGAAG+TGG | - | chr4_3:8182832-8182851 | Msa0627750:intron | 35.0% |
| ! | TTTTGTTAACGCTGAGAAGT+GGG | - | chr4_3:8182833-8182852 | Msa0627750:intron | 35.0% |
| CAAACACCCTTCAAAAAACA+GGG | + | chr4_3:8183269-8183288 | None:intergenic | 35.0% | |
| TCAAACACCCTTCAAAAAAC+AGG | + | chr4_3:8183270-8183289 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGAAGGGTGTTTG+AGG | - | chr4_3:8183269-8183288 | Msa0627750:intron | 35.0% |
| ACAAAGATGGAAAACCGAAA+AGG | + | chr4_3:8183310-8183329 | None:intergenic | 35.0% | |
| AGTGTGGTAAGAAACAAAGA+TGG | + | chr4_3:8183323-8183342 | None:intergenic | 35.0% | |
| ATAGTTAGGCAAATCAAGTG+TGG | + | chr4_3:8183339-8183358 | None:intergenic | 35.0% | |
| GAAATGGTCAATAGCCTATT+GGG | + | chr4_3:8183575-8183594 | None:intergenic | 35.0% | |
| TGAAATGGTCAATAGCCTAT+TGG | + | chr4_3:8183576-8183595 | None:intergenic | 35.0% | |
| ATTGACCATTTCACGACTAA+TGG | - | chr4_3:8183583-8183602 | Msa0627750:intron | 35.0% | |
| TTTAGCCATTAGTCGTGAAA+TGG | + | chr4_3:8183591-8183610 | None:intergenic | 35.0% | |
| !!! | CCAGAAGCAGTTATTTTGAT+TGG | + | chr4_3:8184107-8184126 | None:intergenic | 35.0% |
| CCAATCAAAATAACTGCTTC+TGG | - | chr4_3:8184104-8184123 | Msa0627750:intron | 35.0% | |
| TCAAAATAACTGCTTCTGGT+TGG | - | chr4_3:8184108-8184127 | Msa0627750:intron | 35.0% | |
| ACAACATGAATGTGATCACT+TGG | - | chr4_3:8184145-8184164 | Msa0627750:CDS | 35.0% | |
| TTTCAGAACCGTAGAAAACA+TGG | - | chr4_3:8184205-8184224 | Msa0627750:CDS | 35.0% | |
| CAAAATGAGGCAGATTTCAT+CGG | + | chr4_3:8184415-8184434 | None:intergenic | 35.0% | |
| GAAACGACTTATCATGGAAA+AGG | + | chr4_3:8184469-8184488 | None:intergenic | 35.0% | |
| TTTCCATGATAAGTCGTTTC+AGG | - | chr4_3:8184469-8184488 | Msa0627750:CDS | 35.0% | |
| CTAGCATTAAAGCTGAGAAA+TGG | + | chr4_3:8184566-8184585 | None:intergenic | 35.0% | |
| !!! | AACGGTGGTGGTTTTGAAAA+TGG | + | chr4_3:8180740-8180759 | None:intergenic | 40.0% |
| AAGGTTAAAGTTAACGGTGG+TGG | + | chr4_3:8180752-8180771 | None:intergenic | 40.0% | |
| TTGCCTGATACTGTTAAAGC+TGG | - | chr4_3:8180863-8180882 | Msa0627750:three_prime_UTR | 40.0% | |
| ! | TCACCAGCTTTAACAGTATC+AGG | + | chr4_3:8180869-8180888 | None:intergenic | 40.0% |
| CTAGAAGAAACTCCAATCTG+AGG | + | chr4_3:8181016-8181035 | None:intergenic | 40.0% | |
| CTCAGATTGGAGTTTCTTCT+AGG | - | chr4_3:8181014-8181033 | Msa0627750:CDS | 40.0% | |
| GGGTTTACAGTGTTACAACT+TGG | - | chr4_3:8181382-8181401 | Msa0627750:intron | 40.0% | |
| !! | GCTCATTGGTATTGACAAGT+GGG | + | chr4_3:8181465-8181484 | None:intergenic | 40.0% |
| GACAAACACGATGTTGTGTA+TGG | + | chr4_3:8181487-8181506 | None:intergenic | 40.0% | |
| AGCCTCTTGCGTAAAAAACA+GGG | - | chr4_3:8181671-8181690 | Msa0627750:intron | 40.0% | |
| !!! | TACCCTGTTTTTTACGCAAG+AGG | + | chr4_3:8181676-8181695 | None:intergenic | 40.0% |
| CTTGCGTAAAAAACAGGGTA+AGG | - | chr4_3:8181676-8181695 | Msa0627750:intron | 40.0% | |
| TAAGCGTAGCAGAGTTTAAG+AGG | - | chr4_3:8182109-8182128 | Msa0627750:CDS | 40.0% | |
| GACAACATTAGAGAGAGAGT+TGG | - | chr4_3:8182177-8182196 | Msa0627750:intron | 40.0% | |
| CAACATTAGAGAGAGAGTTG+GGG | - | chr4_3:8182179-8182198 | Msa0627750:intron | 40.0% | |
| TGGTAGAAACTAGACTTAGG+TGG | - | chr4_3:8182223-8182242 | Msa0627750:intron | 40.0% | |
| GCATGTAGAGAGAAAACTTG+TGG | - | chr4_3:8182251-8182270 | Msa0627750:intron | 40.0% | |
| AGTTAGGAGAGTAGATCAGA+TGG | - | chr4_3:8182281-8182300 | Msa0627750:intron | 40.0% | |
| AGAAGGAAACGAAGCAAAAG+GGG | - | chr4_3:8182760-8182779 | Msa0627750:intron | 40.0% | |
| !! | TTCATTGGTTCTCTTGTTGC+AGG | - | chr4_3:8183201-8183220 | Msa0627750:intron | 40.0% |
| ! | TTGTTATTGTTCCGCCATAC+AGG | - | chr4_3:8183519-8183538 | Msa0627750:intron | 40.0% |
| TCAGTGTTGTCAATCCTGTA+TGG | + | chr4_3:8183536-8183555 | None:intergenic | 40.0% | |
| GAAAAAGTGGGATACGATGT+TGG | + | chr4_3:8183634-8183653 | None:intergenic | 40.0% | |
| TTAATGGTGCCCTAGATTGA+AGG | + | chr4_3:8183981-8184000 | None:intergenic | 40.0% | |
| !! | TGTTGATGGATTTAGAGCTG+TGG | - | chr4_3:8184031-8184050 | Msa0627750:intron | 40.0% |
| AACCTGTAACTTCAACGTCA+AGG | + | chr4_3:8184067-8184086 | None:intergenic | 40.0% | |
| TGACGTTGAAGTTACAGGTT+TGG | - | chr4_3:8184067-8184086 | Msa0627750:intron | 40.0% | |
| CATGAATGTGATCACTTGGA+TGG | - | chr4_3:8184149-8184168 | Msa0627750:CDS | 40.0% | |
| !! | TCTACGGTTCTGAAAGTTCT+AGG | + | chr4_3:8184200-8184219 | None:intergenic | 40.0% |
| TTGCCTGAAACGACTTATCA+TGG | + | chr4_3:8184475-8184494 | None:intergenic | 40.0% | |
| ! | CACGATAAGGGTGGGTTTAT+GGG | + | chr4_3:8180588-8180607 | None:intergenic | 45.0% |
| ! | TCACGATAAGGGTGGGTTTA+TGG | + | chr4_3:8180589-8180608 | None:intergenic | 45.0% |
| GAGCAGGTTCATGAAGAACA+GGG | + | chr4_3:8180892-8180911 | None:intergenic | 45.0% | |
| TGAGCAGGTTCATGAAGAAC+AGG | + | chr4_3:8180893-8180912 | None:intergenic | 45.0% | |
| CTAGGATCAACTTCTTGAGC+AGG | + | chr4_3:8180908-8180927 | None:intergenic | 45.0% | |
| ! | TCCTTACAAAACCGGCTTTC+AGG | - | chr4_3:8181138-8181157 | Msa0627750:intron | 45.0% |
| !! | TCCTGAAAGCCGGTTTTGTA+AGG | + | chr4_3:8181142-8181161 | None:intergenic | 45.0% |
| !! | GGCTCATTGGTATTGACAAG+TGG | + | chr4_3:8181466-8181485 | None:intergenic | 45.0% |
| CGATGTTGTGTATGGCTCAT+TGG | + | chr4_3:8181479-8181498 | None:intergenic | 45.0% | |
| AACCATATGAGGGGTAACCT+TGG | - | chr4_3:8181593-8181612 | Msa0627750:intron | 45.0% | |
| CAACTTTATCAGTTGCGCCA+AGG | + | chr4_3:8181613-8181632 | None:intergenic | 45.0% | |
| ! | CTGAAAATGGGTTCAAGTCC+TGG | - | chr4_3:8181644-8181663 | Msa0627750:intron | 45.0% |
| CAGCCTCTTGCGTAAAAAAC+AGG | - | chr4_3:8181670-8181689 | Msa0627750:intron | 45.0% | |
| AAGAGGTTGCGTTGAATGTG+TGG | - | chr4_3:8182126-8182145 | Msa0627750:CDS | 45.0% | |
| TAGGAGAGTAGATCAGATGG+AGG | - | chr4_3:8182284-8182303 | Msa0627750:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | - | chr4_3:8182285-8182304 | Msa0627750:intron | 45.0% | |
| GAGGGGAGTTAAATCACTAG+AGG | - | chr4_3:8182303-8182322 | Msa0627750:intron | 45.0% | |
| ! | AAGCCTTATCCCATTGACTG+GGG | + | chr4_3:8182449-8182468 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCATTGACT+GGG | + | chr4_3:8182450-8182469 | None:intergenic | 45.0% |
| AGCTATGAGCACTTCCTTTG+GGG | + | chr4_3:8183065-8183084 | None:intergenic | 45.0% | |
| GAGCTATGAGCACTTCCTTT+GGG | + | chr4_3:8183066-8183085 | None:intergenic | 45.0% | |
| TGAGCTATGAGCACTTCCTT+TGG | + | chr4_3:8183067-8183086 | None:intergenic | 45.0% | |
| !!! | AGGACTGCCCTGTTTTTTGA+AGG | - | chr4_3:8183259-8183278 | Msa0627750:intron | 45.0% |
| !!! | GGACTGCCCTGTTTTTTGAA+GGG | - | chr4_3:8183260-8183279 | Msa0627750:intron | 45.0% |
| GTGTTGTCAATCCTGTATGG+CGG | + | chr4_3:8183533-8183552 | None:intergenic | 45.0% | |
| TCAATAGCCTATTGGGAGTC+GGG | + | chr4_3:8183568-8183587 | None:intergenic | 45.0% | |
| GTCAATAGCCTATTGGGAGT+CGG | + | chr4_3:8183569-8183588 | None:intergenic | 45.0% | |
| CTCAACTCACTGATAGCTCT+TGG | - | chr4_3:8183833-8183852 | Msa0627750:intron | 45.0% | |
| ACTCACTGATAGCTCTTGGT+TGG | - | chr4_3:8183837-8183856 | Msa0627750:intron | 45.0% | |
| CGTGAGAAAAAACGTGTACG+CGG | - | chr4_3:8183954-8183973 | Msa0627750:intron | 45.0% | |
| !! | TGATGGATTTAGAGCTGTGG+TGG | - | chr4_3:8184034-8184053 | Msa0627750:intron | 45.0% |
| CACCTTGACGTTGAAGTTAC+AGG | - | chr4_3:8184062-8184081 | Msa0627750:intron | 45.0% | |
| GTTACAGGTTTGGATCGCAA+TGG | - | chr4_3:8184077-8184096 | Msa0627750:intron | 45.0% | |
| ! | AATAACTGCTTCTGGTTGGC+AGG | - | chr4_3:8184112-8184131 | Msa0627750:intron | 45.0% |
| ! | AGGCAGGTCCATGTTTTCTA+CGG | + | chr4_3:8184216-8184235 | None:intergenic | 45.0% |
| ! | TGTGTTGACAGCCTTATCAG+AGG | + | chr4_3:8184300-8184319 | None:intergenic | 45.0% |
| TCTGATAAGGCTGTCAACAC+AGG | - | chr4_3:8184299-8184318 | Msa0627750:CDS | 45.0% | |
| !! | AATAAAAAACAAAAAATAAA+GGG | + | chr4_3:8181080-8181099 | None:intergenic | 5.0% |
| !! | TAATAAAAAACAAAAAATAA+AGG | + | chr4_3:8181081-8181100 | None:intergenic | 5.0% |
| GCTACTGTAAGAACAAGGGC+AGG | - | chr4_3:8180788-8180807 | Msa0627750:three_prime_UTR | 50.0% | |
| AGGGTTATGAGGAAAGCTCC+TGG | - | chr4_3:8180974-8180993 | Msa0627750:CDS | 50.0% | |
| ATGAGGAAAGCTCCTGGTGT+TGG | - | chr4_3:8180980-8180999 | Msa0627750:CDS | 50.0% | |
| GGTTTAGCTGCTCCTCAGAT+TGG | - | chr4_3:8181001-8181020 | Msa0627750:CDS | 50.0% | |
| CAAGACTACAACTAGGCAGG+GGG | + | chr4_3:8181424-8181443 | None:intergenic | 50.0% | |
| GCAAGACTACAACTAGGCAG+GGG | + | chr4_3:8181425-8181444 | None:intergenic | 50.0% | |
| CGCAAGACTACAACTAGGCA+GGG | + | chr4_3:8181426-8181445 | None:intergenic | 50.0% | |
| ! | TTACGCAAGAGGCTGTTTCC+AGG | + | chr4_3:8181665-8181684 | None:intergenic | 50.0% |
| GCACTGCAGCTTCAGATTGA+AGG | + | chr4_3:8181770-8181789 | None:intergenic | 50.0% | |
| GTGGCAAGACTAGACGTGAT+AGG | - | chr4_3:8182145-8182164 | Msa0627750:intron | 50.0% | |
| GGAGAGTAGATCAGATGGAG+GGG | - | chr4_3:8182286-8182305 | Msa0627750:intron | 50.0% | |
| ATGTAGCCAACCCCAGTCAA+TGG | - | chr4_3:8182436-8182455 | Msa0627750:intron | 50.0% | |
| TGTAGCCAACCCCAGTCAAT+GGG | - | chr4_3:8182437-8182456 | Msa0627750:intron | 50.0% | |
| ! | CTTATCCCATTGACTGGGGT+TGG | + | chr4_3:8182445-8182464 | None:intergenic | 50.0% |
| CAACCCCAGTCAATGGGATA+AGG | - | chr4_3:8182443-8182462 | Msa0627750:intron | 50.0% | |
| ! | CCAAGCCTTATCCCATTGAC+TGG | + | chr4_3:8182451-8182470 | None:intergenic | 50.0% |
| CCAGTCAATGGGATAAGGCT+TGG | - | chr4_3:8182448-8182467 | Msa0627750:intron | 50.0% | |
| TTGCTCGTACTCTTCAGCCT+GGG | + | chr4_3:8183238-8183257 | None:intergenic | 50.0% | |
| TTTGCTCGTACTCTTCAGCC+TGG | + | chr4_3:8183239-8183258 | None:intergenic | 50.0% | |
| ! | GGCTGAAGAGTACGAGCAAA+AGG | - | chr4_3:8183239-8183258 | Msa0627750:intron | 50.0% |
| TTTACCTCCCGACTCCCAAT+AGG | - | chr4_3:8183558-8183577 | Msa0627750:intron | 50.0% | |
| TGTACGCGGTCCTTCAATCT+AGG | - | chr4_3:8183968-8183987 | Msa0627750:intron | 50.0% | |
| GTACGCGGTCCTTCAATCTA+GGG | - | chr4_3:8183969-8183988 | Msa0627750:intron | 50.0% | |
| CCCAAAACATGCGTTACCGA+GGG | + | chr4_3:8184265-8184284 | None:intergenic | 50.0% | |
| ! | CCCTCGGTAACGCATGTTTT+GGG | - | chr4_3:8184262-8184281 | Msa0627750:CDS | 50.0% |
| TCCCAAAACATGCGTTACCG+AGG | + | chr4_3:8184266-8184285 | None:intergenic | 50.0% | |
| GGAGCAGCTAAACCAACACC+AGG | + | chr4_3:8180995-8181014 | None:intergenic | 55.0% | |
| GCGCAAGACTACAACTAGGC+AGG | + | chr4_3:8181427-8181446 | None:intergenic | 55.0% | |
| AGCGGCGCAAGACTACAACT+AGG | + | chr4_3:8181431-8181450 | None:intergenic | 55.0% | |
| AAGTGGGCCAAGACATCGAG+CGG | + | chr4_3:8181449-8181468 | None:intergenic | 55.0% | |
| CGCCAAGGTTACCCCTCATA+TGG | + | chr4_3:8181598-8181617 | None:intergenic | 55.0% | |
| !! | GGAAGTACTGCTCAAGCCGA+AGG | - | chr4_3:8182001-8182020 | Msa0627750:intron | 55.0% |
| TGCAGGTGATCGTGAATCCC+AGG | - | chr4_3:8183218-8183237 | Msa0627750:intron | 55.0% | |
| ATAGCCTATTGGGAGTCGGG+AGG | + | chr4_3:8183565-8183584 | None:intergenic | 55.0% | |
| ATGGACCTGCCTCTTGCTCA+GGG | - | chr4_3:8184224-8184243 | Msa0627750:CDS | 55.0% | |
| GTTACCGAGGGCCAAGTTTC+GGG | + | chr4_3:8184253-8184272 | None:intergenic | 55.0% | |
| CGTTACCGAGGGCCAAGTTT+CGG | + | chr4_3:8184254-8184273 | None:intergenic | 55.0% | |
| ! | GCCCTCGGTAACGCATGTTT+TGG | - | chr4_3:8184261-8184280 | Msa0627750:CDS | 55.0% |
| CGTTGCTGCTGCCTCTGATA+AGG | - | chr4_3:8184286-8184305 | Msa0627750:CDS | 55.0% | |
| GTGGGGGCAATCCTGAAAGC+CGG | + | chr4_3:8181152-8181171 | None:intergenic | 60.0% | |
| TCTTGCGCCGCTCGATGTCT+TGG | - | chr4_3:8181439-8181458 | Msa0627750:intron | 60.0% | |
| CATGGACCTGCCTCTTGCTC+AGG | - | chr4_3:8184223-8184242 | Msa0627750:CDS | 60.0% | |
| TTCGGGCATCCCTGAGCAAG+AGG | + | chr4_3:8184236-8184255 | None:intergenic | 60.0% | |
| GCTCAGGGATGCCCGAAACT+TGG | - | chr4_3:8184239-8184258 | Msa0627750:CDS | 60.0% | |
| GATGCCCGAAACTTGGCCCT+CGG | - | chr4_3:8184246-8184265 | Msa0627750:CDS | 60.0% | |
| ! | CTGCTTCTGGTTGGCAGGCC+CGG | - | chr4_3:8184117-8184136 | Msa0627750:intron | 65.0% |
| GGCATCCCTGAGCAAGAGGC+AGG | + | chr4_3:8184232-8184251 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 8180563 | 8184612 | 8180563 | ID=Msa0627750;Name=Msa0627750 |
| chr4_3 | mRNA | 8180563 | 8184612 | 8180563 | ID=Msa0627750-mRNA-1;Parent=Msa0627750;Name=Msa0627750-mRNA-1;_AED=0.07;_eAED=0.07;_QI=72|1|1|1|1|1|4|341|266 |
| chr4_3 | exon | 8180563 | 8181144 | 8180563 | ID=Msa0627750-mRNA-1:exon:2334;Parent=Msa0627750-mRNA-1 |
| chr4_3 | exon | 8181885 | 8181952 | 8181885 | ID=Msa0627750-mRNA-1:exon:2333;Parent=Msa0627750-mRNA-1 |
| chr4_3 | exon | 8182064 | 8182153 | 8182064 | ID=Msa0627750-mRNA-1:exon:2332;Parent=Msa0627750-mRNA-1 |
| chr4_3 | exon | 8184139 | 8184612 | 8184139 | ID=Msa0627750-mRNA-1:exon:2331;Parent=Msa0627750-mRNA-1 |
| chr4_3 | five_prime_UTR | 8184541 | 8184612 | 8184541 | ID=Msa0627750-mRNA-1:five_prime_utr;Parent=Msa0627750-mRNA-1 |
| chr4_3 | CDS | 8184139 | 8184540 | 8184139 | ID=Msa0627750-mRNA-1:cds;Parent=Msa0627750-mRNA-1 |
| chr4_3 | CDS | 8182064 | 8182153 | 8182064 | ID=Msa0627750-mRNA-1:cds;Parent=Msa0627750-mRNA-1 |
| chr4_3 | CDS | 8181885 | 8181952 | 8181885 | ID=Msa0627750-mRNA-1:cds;Parent=Msa0627750-mRNA-1 |
| chr4_3 | CDS | 8180904 | 8181144 | 8180904 | ID=Msa0627750-mRNA-1:cds;Parent=Msa0627750-mRNA-1 |
| chr4_3 | three_prime_UTR | 8180563 | 8180903 | 8180563 | ID=Msa0627750-mRNA-1:three_prime_utr;Parent=Msa0627750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
