AlfalfaGEDB | Msa0530720

M. sativa cultivar zhongmu-4 / Msa0530720

KEGG: K01462
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564
PFAM: PF01327.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0530720	XP_013454668.1	95.896	268	10	1	1	268	1	267	7.72e-169	477

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0530720	sp\|Q9FUZ0\|DEF1A_SOLLC	67.826	230	67	2	37	266	53	275	5.59e-110	321

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0530720	A0A072UG23	95.896	268	10	1	1	268	1	267	3.69e-169	477

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0057770	Msa0530720	0.810265	1.255910e-50	-8.615850e-47
Msa0206450	Msa0530720	-0.813136	2.982426e-51	-8.615850e-47
Msa0367380	Msa0530720	0.805389	1.367017e-49	-8.615850e-47
Msa0397420	Msa0530720	0.809251	2.074778e-50	-8.615850e-47
Msa0420810	Msa0530720	0.809741	1.628488e-50	-8.615850e-47
Msa0512950	Msa0530720	0.819831	9.446813e-53	-8.615850e-47
Msa0520550	Msa0530720	0.818225	2.190280e-52	-8.615850e-47
Msa0530720	Msa0587550	0.866932	1.985423e-65	-8.615850e-47
Msa0530720	Msa0627750	0.901246	3.252911e-78	-8.615850e-47
Msa0530720	Msa1079720	0.808793	2.600897e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0530720	MtrunA17_Chr4g0003601	95.896	268	10	1	1	268	1	267	7.10e-173	477
Msa0530720	MtrunA17_Chr2g0332821	68.908	238	55	2	31	268	38	256	7.54e-111	320
Msa0530720	MtrunA17_Chr2g0332811	68.254	189	60	0	73	261	72	260	3.92e-89	266
Msa0530720	MtrunA17_Chr7g0228371	30.806	211	122	4	42	251	28	215	1.24e-25	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0530720	AT1G15390.1	72.038	211	55	1	58	268	63	269	1.42e-110	320
Msa0530720	AT5G14660.1	33.728	169	95	3	83	251	84	235	4.13e-23	95.9
Msa0530720	AT5G14660.3	33.728	169	95	3	83	251	84	235	4.13e-23	95.9
Msa0530720	AT5G14660.2	33.728	169	95	3	83	251	84	235	4.13e-23	95.9

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Find 91 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGATAGAGATAAT+GGG	0.423760	4_1:-4786574	None:intergenic
AAACGACTTATCATGGAAAA+GGG	0.533289	4_1:-4789851	None:intergenic
AAACTGCTACTGTAAGAACA+AGG	0.615173	4_1:+4786642	Msa0530720:CDS
AAATGGTGATAGAGATAATG+GGG	0.673193	4_1:-4786573	None:intergenic
AAATTATTGATGATATGATT+AGG	0.316488	4_1:+4786813	Msa0530720:CDS
AACCTGTAACTTCAACGTCA+AGG	0.623085	4_1:-4789450	None:intergenic
AACTCTATATGTTGATAAGA+TGG	0.483415	4_1:+4789558	Msa0530720:CDS
AACTGCTACTGTAAGAACAA+GGG	0.673682	4_1:+4786643	Msa0530720:CDS
AAGAAAATCACGATAAGGGT+GGG	0.586340	4_1:-4786446	None:intergenic
AAGGTTAAAGTTAATGGTGG+GGG	0.496150	4_1:-4786602	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTTCTATGGAACACAAT+AGG	-	chr4_1:4786407-4786426	None:intergenic	30.0%
CTGTAAGAAAATCACGATAA+GGG	-	chr4_1:4786453-4786472	None:intergenic	30.0%
TCTGTAAGAAAATCACGATA+AGG	-	chr4_1:4786454-4786473	None:intergenic	30.0%
GAGAGATATTCAGAAAATGA+AGG	+	chr4_1:4786472-4786491	Msa0530720:exon	30.0%
TATTCAGAAAATGAAGGCTA+TGG	+	chr4_1:4786478-4786497	Msa0530720:exon	30.0%
AAATGGTGATAGAGATAATG+GGG	-	chr4_1:4786576-4786595	None:intergenic	30.0%
GAAAATGGTGATAGAGATAA+TGG	-	chr4_1:4786578-4786597	None:intergenic	30.0%
TAAGGTTAAAGTTAATGGTG+GGG	-	chr4_1:4786606-4786625	None:intergenic	30.0%
GATAAGGTTAAAGTTAATGG+TGG	-	chr4_1:4786608-4786627	None:intergenic	30.0%
TTGAGAAGATGAAGATGATA+AGG	-	chr4_1:4786624-4786643	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	4786393	4789998	4786393	ID=Msa0530720;Name=Msa0530720
chr4_1	mRNA	4786393	4789998	4786393	ID=Msa0530720-mRNA-1;Parent=Msa0530720;Name=Msa0530720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95\|1\|1\|1\|1\|1\|4\|341\|268
chr4_1	exon	4786393	4786895	4786393	ID=Msa0530720-mRNA-1:exon:1458;Parent=Msa0530720-mRNA-1
chr4_1	exon	4788408	4788497	4788408	ID=Msa0530720-mRNA-1:exon:1459;Parent=Msa0530720-mRNA-1
chr4_1	exon	4788609	4788676	4788609	ID=Msa0530720-mRNA-1:exon:1460;Parent=Msa0530720-mRNA-1
chr4_1	exon	4789417	4789998	4789417	ID=Msa0530720-mRNA-1:exon:1461;Parent=Msa0530720-mRNA-1
chr4_1	five_prime_UTR	4786393	4786487	4786393	ID=Msa0530720-mRNA-1:five_prime_utr;Parent=Msa0530720-mRNA-1
chr4_1	CDS	4786488	4786895	4786488	ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1
chr4_1	CDS	4788408	4788497	4788408	ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1
chr4_1	CDS	4788609	4788676	4788609	ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1
chr4_1	CDS	4789417	4789657	4789417	ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1
chr4_1	three_prime_UTR	4789658	4789998	4789658	ID=Msa0530720-mRNA-1:three_prime_utr;Parent=Msa0530720-mRNA-1

Gene Sequence

>Msa0530720

ATGAAGGCTATGGAAGCTTTACACTTACGGTGTATACTTCCACTATCCATAACCAAAAACTCTCTCTTTACACTTCAAACAACAACCCCATTATCTCTATCACCATTTTCAAAACCCCCACCATTAACTTTAACCTTATCATCTTCATCTTCTCAAACTGCTACTGTAAGAACAAGGGCAGGTTTTTTTTTTGGTCGTACAAAAGATGATGATAAGAAGAAGAAGAAGATGAATTTGCCTGATACTGTTAAAGCTGGTGACCCTGTTCTTCATGAACCTGCTCAAGAAGTTGATCCTAGTGAGATAATGTCTGATAAAGTGCAGAAAATTATTGATGATATGATTAGGGTTATGAGGAAAGCTCCTGGTGTTGGTTTAGCTGCTCCTCAGATTGGAGTTTCTTCTAGGATAATTGTTTTGGAAGATACCAAAGAATTTATTAGTTATGCCCCAAAGGAAGTGCTCATAGCTCAAGATAGACATCCTTTTGATCTTTTGGTGATCGTGAATCCCAGGCTGAAGAGTACGAGCAAAAGGACTGCCCTGTTTTTTGAAGGGTGTTTGAGTGTTGATGGATTTAGAGCTGTGGTGGAACGTCACCTTGACGTTGAAGTTACAGGTTTGGATCGCAATGGTGAACCAATCAAAATAACTGCTTCTGGTTGGCAGGCCCGGATTTTACAACATGAATGTGATCACTTGGATGGAACTCTATATGTTGATAAGATGGTACCTAGAACTTTCAGAACCGTAGAAAACATGGACCTGCCTCTTGCTCAGGGATGCCCGAAACTTGGCCCTCGGTAA

Protein sequence

>Msa0530720

MKAMEALHLRCILPLSITKNSLFTLQTTTPLSLSPFSKPPPLTLTLSSSSSQTATVRTRAGFFFGRTKDDDKKKKKMNLPDTVKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLEDTKEFISYAPKEVLIAQDRHPFDLLVIVNPRLKSTSKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRNGEPIKITASGWQARILQHECDHLDGTLYVDKMVPRTFRTVENMDLPLAQGCPKLGPR*