Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530720 | XP_013454668.1 | 95.896 | 268 | 10 | 1 | 1 | 268 | 1 | 267 | 7.72e-169 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530720 | sp|Q9FUZ0|DEF1A_SOLLC | 67.826 | 230 | 67 | 2 | 37 | 266 | 53 | 275 | 5.59e-110 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530720 | A0A072UG23 | 95.896 | 268 | 10 | 1 | 1 | 268 | 1 | 267 | 3.69e-169 | 477 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057770 | Msa0530720 | 0.810265 | 1.255910e-50 | -8.615850e-47 |
| Msa0206450 | Msa0530720 | -0.813136 | 2.982426e-51 | -8.615850e-47 |
| Msa0367380 | Msa0530720 | 0.805389 | 1.367017e-49 | -8.615850e-47 |
| Msa0397420 | Msa0530720 | 0.809251 | 2.074778e-50 | -8.615850e-47 |
| Msa0420810 | Msa0530720 | 0.809741 | 1.628488e-50 | -8.615850e-47 |
| Msa0512950 | Msa0530720 | 0.819831 | 9.446813e-53 | -8.615850e-47 |
| Msa0520550 | Msa0530720 | 0.818225 | 2.190280e-52 | -8.615850e-47 |
| Msa0530720 | Msa0587550 | 0.866932 | 1.985423e-65 | -8.615850e-47 |
| Msa0530720 | Msa0627750 | 0.901246 | 3.252911e-78 | -8.615850e-47 |
| Msa0530720 | Msa1079720 | 0.808793 | 2.600897e-50 | -8.615850e-47 |
| Msa0530720 | Msa1080610 | 0.827802 | 1.279265e-54 | -8.615850e-47 |
| Msa0530720 | Msa1080680 | 0.827942 | 1.183966e-54 | -8.615850e-47 |
| Msa0530720 | Msa1124460 | 0.800119 | 1.673486e-48 | -8.615850e-47 |
| Msa0530720 | Msa1126320 | 0.829970 | 3.821592e-55 | -8.615850e-47 |
| Msa0530720 | Msa1133690 | -0.810294 | 1.238201e-50 | -8.615850e-47 |
| Msa0530720 | Msa1167150 | 0.826932 | 2.068136e-54 | -8.615850e-47 |
| Msa0530720 | Msa1208450 | 0.805837 | 1.100722e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530720 | MtrunA17_Chr4g0003601 | 95.896 | 268 | 10 | 1 | 1 | 268 | 1 | 267 | 7.10e-173 | 477 |
| Msa0530720 | MtrunA17_Chr2g0332821 | 68.908 | 238 | 55 | 2 | 31 | 268 | 38 | 256 | 7.54e-111 | 320 |
| Msa0530720 | MtrunA17_Chr2g0332811 | 68.254 | 189 | 60 | 0 | 73 | 261 | 72 | 260 | 3.92e-89 | 266 |
| Msa0530720 | MtrunA17_Chr7g0228371 | 30.806 | 211 | 122 | 4 | 42 | 251 | 28 | 215 | 1.24e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530720 | AT1G15390.1 | 72.038 | 211 | 55 | 1 | 58 | 268 | 63 | 269 | 1.42e-110 | 320 |
| Msa0530720 | AT5G14660.1 | 33.728 | 169 | 95 | 3 | 83 | 251 | 84 | 235 | 4.13e-23 | 95.9 |
| Msa0530720 | AT5G14660.3 | 33.728 | 169 | 95 | 3 | 83 | 251 | 84 | 235 | 4.13e-23 | 95.9 |
| Msa0530720 | AT5G14660.2 | 33.728 | 169 | 95 | 3 | 83 | 251 | 84 | 235 | 4.13e-23 | 95.9 |
Find 91 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGATAAGGGTGGGTTTA+TGG | 0.136478 | 4_1:-4786439 | None:intergenic |
| TTGTTCTGTTTATTCTTCTA+TGG | 0.194919 | 4_1:-4786415 | None:intergenic |
| GCCCTCGGTAACGCATGTTT+TGG | 0.233533 | 4_1:+4789647 | Msa0530720:exon |
| CTCAGATTGGAGTTTCTTCT+AGG | 0.243478 | 4_1:+4786873 | Msa0530720:CDS |
| GAAAATGGTGATAGAGATAA+TGG | 0.253015 | 4_1:-4786575 | None:intergenic |
| GGCATAACTAATAAATTCTT+TGG | 0.259044 | 4_1:-4788427 | None:intergenic |
| CACTATGCAGATAATTGTTT+TGG | 0.265370 | 4_1:+4788398 | Msa0530720:intron |
| TTTCCATGATAAGTCGTTTC+AGG | 0.267339 | 4_1:+4789855 | Msa0530720:three_prime_UTR |
| CACCTTGACGTTGAAGTTAC+AGG | 0.267498 | 4_1:+4789448 | Msa0530720:CDS |
| GATGATAAGGTTAAAGTTAA+TGG | 0.268448 | 4_1:-4786608 | None:intergenic |
| GAGCTATGAGCACTTCCTTT+GGG | 0.276369 | 4_1:-4788449 | None:intergenic |
| GTTACCGAGGGCCAAGTTTC+GGG | 0.283852 | 4_1:-4789636 | None:intergenic |
| TCTACGGTTCTGAAAGTTCT+AGG | 0.285952 | 4_1:-4789583 | None:intergenic |
| CACGATAAGGGTGGGTTTAT+GGG | 0.287396 | 4_1:-4786438 | None:intergenic |
| TTCAGTGTTAAATATTATAC+TGG | 0.295687 | 4_1:+4789883 | Msa0530720:three_prime_UTR |
| AAATTATTGATGATATGATT+AGG | 0.316488 | 4_1:+4786813 | Msa0530720:CDS |
| ATTTCTAAAATATTTGAATC+TGG | 0.326035 | 4_1:-4789760 | None:intergenic |
| CACATTCATGTTGTAAAATC+CGG | 0.342414 | 4_1:-4789522 | None:intergenic |
| CCAATCAAAATAACTGCTTC+TGG | 0.342745 | 4_1:+4789490 | Msa0530720:CDS |
| TCACCAGCTTTAACAGTATC+AGG | 0.343078 | 4_1:-4786725 | None:intergenic |
| CGTTACCGAGGGCCAAGTTT+CGG | 0.344854 | 4_1:-4789637 | None:intergenic |
| AATTATTGATGATATGATTA+GGG | 0.344880 | 4_1:+4786814 | Msa0530720:CDS |
| TGAGCTATGAGCACTTCCTT+TGG | 0.361255 | 4_1:-4788450 | None:intergenic |
| ATTCTTCTATGGAACACAAT+AGG | 0.366896 | 4_1:-4786404 | None:intergenic |
| CTGCTTCTGGTTGGCAGGCC+CGG | 0.375678 | 4_1:+4789503 | Msa0530720:CDS |
| CATGGACCTGCCTCTTGCTC+AGG | 0.377726 | 4_1:+4789609 | Msa0530720:CDS |
| TATAATGCAATGACATAATT+CGG | 0.379896 | 4_1:-4789825 | None:intergenic |
| GGTTTAGCTGCTCCTCAGAT+TGG | 0.386408 | 4_1:+4786860 | Msa0530720:CDS |
| TTGAGAAGATGAAGATGATA+AGG | 0.388406 | 4_1:-4786621 | None:intergenic |
| TGAGCAGGTTCATGAAGAAC+AGG | 0.394698 | 4_1:-4786749 | None:intergenic |
| TTTGCTCGTACTCTTCAGCC+TGG | 0.404432 | 4_1:-4788622 | None:intergenic |
| TGACGTTGAAGTTACAGGTT+TGG | 0.412939 | 4_1:+4789453 | Msa0530720:CDS |
| TCTGTAAGAAAATCACGATA+AGG | 0.419805 | 4_1:-4786451 | None:intergenic |
| AAAATGGTGATAGAGATAAT+GGG | 0.423760 | 4_1:-4786574 | None:intergenic |
| ATGATATGATTAGGGTTATG+AGG | 0.426883 | 4_1:+4786822 | Msa0530720:CDS |
| GAAACGACTTATCATGGAAA+AGG | 0.427241 | 4_1:-4789852 | None:intergenic |
| GCTCAGGGATGCCCGAAACT+TGG | 0.436382 | 4_1:+4789625 | Msa0530720:CDS |
| CATTGCTGCTGCCTCTGATA+AGG | 0.445272 | 4_1:+4789672 | Msa0530720:three_prime_UTR |
| TTGCCTGAAACGACTTATCA+TGG | 0.447929 | 4_1:-4789858 | None:intergenic |
| CTTGCATTAAAGCTGAGAAA+TGG | 0.453066 | 4_1:-4789949 | None:intergenic |
| AATAACTGCTTCTGGTTGGC+AGG | 0.461517 | 4_1:+4789498 | Msa0530720:CDS |
| GAACATACCAAAAGATCAAA+AGG | 0.463797 | 4_1:-4788483 | None:intergenic |
| TCAGATTGGAGTTTCTTCTA+GGG | 0.471837 | 4_1:+4786874 | Msa0530720:CDS |
| CTATGGAAGCTTTACACTTA+CGG | 0.473557 | 4_1:+4786495 | Msa0530720:CDS |
| GGCATCCCTGAGCAAGAGGC+AGG | 0.481807 | 4_1:-4789615 | None:intergenic |
| AACTCTATATGTTGATAAGA+TGG | 0.483415 | 4_1:+4789558 | Msa0530720:CDS |
| CTAGGATCAACTTCTTGAGC+AGG | 0.493700 | 4_1:-4786764 | None:intergenic |
| ATGAGGAAAGCTCCTGGTGT+TGG | 0.494343 | 4_1:+4786839 | Msa0530720:CDS |
| AAGGTTAAAGTTAATGGTGG+GGG | 0.496150 | 4_1:-4786602 | None:intergenic |
| GGCTGAAGAGTACGAGCAAA+AGG | 0.512028 | 4_1:+4788625 | Msa0530720:CDS |
| CTGTAAGAAAATCACGATAA+GGG | 0.516073 | 4_1:-4786450 | None:intergenic |
| TTGCCTGATACTGTTAAAGC+TGG | 0.517276 | 4_1:+4786722 | Msa0530720:CDS |
| TATTCAGAAAATGAAGGCTA+TGG | 0.517748 | 4_1:+4786478 | Msa0530720:exon |
| TTGCTCGTACTCTTCAGCCT+GGG | 0.529092 | 4_1:-4788621 | None:intergenic |
| ATAAGGTTAAAGTTAATGGT+GGG | 0.530548 | 4_1:-4786604 | None:intergenic |
| AAACGACTTATCATGGAAAA+GGG | 0.533289 | 4_1:-4789851 | None:intergenic |
| GATAAGGTTAAAGTTAATGG+TGG | 0.535661 | 4_1:-4786605 | None:intergenic |
| ATAATTCGGCATACAAAATG+AGG | 0.542585 | 4_1:-4789811 | None:intergenic |
| ACAACATGAATGTGATCACT+TGG | 0.545261 | 4_1:+4789531 | Msa0530720:CDS |
| CATGAATGTGATCACTTGGA+TGG | 0.545479 | 4_1:+4789535 | Msa0530720:CDS |
| ACATTCATGTTGTAAAATCC+GGG | 0.546437 | 4_1:-4789521 | None:intergenic |
| GAGAGATATTCAGAAAATGA+AGG | 0.546950 | 4_1:+4786472 | Msa0530720:exon |
| AGCTATGAGCACTTCCTTTG+GGG | 0.558890 | 4_1:-4788448 | None:intergenic |
| TCAAAATAACTGCTTCTGGT+TGG | 0.559785 | 4_1:+4789494 | Msa0530720:CDS |
| TTTCAGAACCGTAGAAAACA+TGG | 0.567140 | 4_1:+4789591 | Msa0530720:CDS |
| TAAGGTTAAAGTTAATGGTG+GGG | 0.574273 | 4_1:-4786603 | None:intergenic |
| TCTGATAAGGCTGTCAACAC+AGG | 0.580727 | 4_1:+4789685 | Msa0530720:three_prime_UTR |
| ATGGACCTGCCTCTTGCTCA+GGG | 0.581868 | 4_1:+4789610 | Msa0530720:CDS |
| TTCGGGCATCCCTGAGCAAG+AGG | 0.582488 | 4_1:-4789619 | None:intergenic |
| AAGAAAATCACGATAAGGGT+GGG | 0.586340 | 4_1:-4786446 | None:intergenic |
| TTATCAGACATTATCTCACT+AGG | 0.592235 | 4_1:-4786782 | None:intergenic |
| CAAAATGAGGCAGATTTCAT+CGG | 0.592454 | 4_1:-4789798 | None:intergenic |
| TGCAGGTGATCGTGAATCCC+AGG | 0.596578 | 4_1:+4788604 | Msa0530720:intron |
| TGATGGATTTAGAGCTGTGG+TGG | 0.598884 | 4_1:+4789420 | Msa0530720:CDS |
| AGGGTTATGAGGAAAGCTCC+TGG | 0.599633 | 4_1:+4786833 | Msa0530720:CDS |
| ATTTATTAGTTATGCCCCAA+AGG | 0.600743 | 4_1:+4788434 | Msa0530720:CDS |
| TAAGAAAATCACGATAAGGG+TGG | 0.602629 | 4_1:-4786447 | None:intergenic |
| GATGCCCGAAACTTGGCCCT+CGG | 0.604972 | 4_1:+4789632 | Msa0530720:CDS |
| TCCCAAAACATGCGTTACCG+AGG | 0.605470 | 4_1:-4789649 | None:intergenic |
| AAACTGCTACTGTAAGAACA+AGG | 0.615173 | 4_1:+4786642 | Msa0530720:CDS |
| GCTACTGTAAGAACAAGGGC+AGG | 0.619022 | 4_1:+4786647 | Msa0530720:CDS |
| AACCTGTAACTTCAACGTCA+AGG | 0.623085 | 4_1:-4789450 | None:intergenic |
| CCCAAAACATGCGTTACCGA+GGG | 0.628580 | 4_1:-4789648 | None:intergenic |
| TGTTGATGGATTTAGAGCTG+TGG | 0.633917 | 4_1:+4789417 | Msa0530720:CDS |
| GTTACAGGTTTGGATCGCAA+TGG | 0.637881 | 4_1:+4789463 | Msa0530720:CDS |
| CTAGAAGAAACTCCAATCTG+AGG | 0.652902 | 4_1:-4786872 | None:intergenic |
| AAATGGTGATAGAGATAATG+GGG | 0.673193 | 4_1:-4786573 | None:intergenic |
| AACTGCTACTGTAAGAACAA+GGG | 0.673682 | 4_1:+4786643 | Msa0530720:CDS |
| GGAGCAGCTAAACCAACACC+AGG | 0.676457 | 4_1:-4786851 | None:intergenic |
| TGTGTTGACAGCCTTATCAG+AGG | 0.687663 | 4_1:-4789683 | None:intergenic |
| GAGCAGGTTCATGAAGAACA+GGG | 0.696995 | 4_1:-4786748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTTTATCTTAAATTAT+TGG | - | chr4_1:4786952-4786971 | None:intergenic | 10.0% |
| !! | AATACATATATATAATTCAT+TGG | + | chr4_1:4788572-4788591 | Msa0530720:intron | 10.0% |
| !!! | AAATTATTGATGATATGATT+AGG | + | chr4_1:4786813-4786832 | Msa0530720:CDS | 15.0% |
| !!! | AATTATTGATGATATGATTA+GGG | + | chr4_1:4786814-4786833 | Msa0530720:CDS | 15.0% |
| !!! | TTTGAAATTTAGTTAATTTC+AGG | + | chr4_1:4787977-4787996 | Msa0530720:intron | 15.0% |
| !! | TCAAATTACTTTCAATTTAT+AGG | - | chr4_1:4788358-4788377 | None:intergenic | 15.0% |
| !! | AAATTTCTTAGATTAAAAGA+GGG | - | chr4_1:4788804-4788823 | None:intergenic | 15.0% |
| !! | GATTATTATTTATTGCTTAA+TGG | + | chr4_1:4789158-4789177 | Msa0530720:intron | 15.0% |
| !! | TATGAATTTATTAAAGTACA+GGG | - | chr4_1:4789252-4789271 | None:intergenic | 15.0% |
| !!! | ATTTCTAAAATATTTGAATC+TGG | - | chr4_1:4789763-4789782 | None:intergenic | 15.0% |
| !! | ATATGACTGATACATATAAA+AGG | - | chr4_1:4787110-4787129 | None:intergenic | 20.0% |
| !!! | TATTTGATTTTGAAATTGCA+GGG | + | chr4_1:4787276-4787295 | Msa0530720:intron | 20.0% |
| !! | TATTTGAACTTCAATTCAAA+TGG | - | chr4_1:4788182-4788201 | None:intergenic | 20.0% |
| !! | AATTGAAAGTAATTTGAACT+TGG | + | chr4_1:4788361-4788380 | Msa0530720:intron | 20.0% |
| !! | CAAATTTCTTAGATTAAAAG+AGG | - | chr4_1:4788805-4788824 | None:intergenic | 20.0% |
| !! | ATTCCGTATTTCAAATTAAT+CGG | - | chr4_1:4789043-4789062 | None:intergenic | 20.0% |
| !!! | CTTTGAAACAATTGTTTATA+TGG | - | chr4_1:4789125-4789144 | None:intergenic | 20.0% |
| !! | CTATGAATTTATTAAAGTAC+AGG | - | chr4_1:4789253-4789272 | None:intergenic | 20.0% |
| !! | ATAACAATTGAACATGTTAA+TGG | - | chr4_1:4789383-4789402 | None:intergenic | 20.0% |
| !! | TATAATGCAATGACATAATT+CGG | - | chr4_1:4789828-4789847 | None:intergenic | 20.0% |
| !! | TTCAGTGTTAAATATTATAC+TGG | + | chr4_1:4789883-4789902 | Msa0530720:three_prime_UTR | 20.0% |
| !! | TTATACTGGAAAAATTTCTT+AGG | + | chr4_1:4789897-4789916 | Msa0530720:three_prime_UTR | 20.0% |
| ! | TTGTTCTGTTTATTCTTCTA+TGG | - | chr4_1:4786418-4786437 | None:intergenic | 25.0% |
| ! | AAAATGGTGATAGAGATAAT+GGG | - | chr4_1:4786577-4786596 | None:intergenic | 25.0% |
| ! | ATAAGGTTAAAGTTAATGGT+GGG | - | chr4_1:4786607-4786626 | None:intergenic | 25.0% |
| ! | GATGATAAGGTTAAAGTTAA+TGG | - | chr4_1:4786611-4786630 | None:intergenic | 25.0% |
| ! | TATCATCATCATCATTATCA+TGG | + | chr4_1:4787217-4787236 | Msa0530720:intron | 25.0% |
| !!! | CTATTTGATTTTGAAATTGC+AGG | + | chr4_1:4787275-4787294 | Msa0530720:intron | 25.0% |
| !! | TAATGAGTTGGATGTAAATA+TGG | + | chr4_1:4787766-4787785 | Msa0530720:intron | 25.0% |
| !! | GATGTAAATATGGTTTTTGA+TGG | + | chr4_1:4787776-4787795 | Msa0530720:intron | 25.0% |
| !!! | TTGTACTAGTCTTTTTGAAT+AGG | + | chr4_1:4787866-4787885 | Msa0530720:intron | 25.0% |
| ! | AAGGACTAAATTGACTAAAT+TGG | + | chr4_1:4788034-4788053 | Msa0530720:intron | 25.0% |
| ! | TGATCTACTCAATATATTGA+AGG | + | chr4_1:4788057-4788076 | Msa0530720:intron | 25.0% |
| ! | GAAAATTGAAAGTGAATTTG+TGG | + | chr4_1:4788295-4788314 | Msa0530720:intron | 25.0% |
| ! | GGCATAACTAATAAATTCTT+TGG | - | chr4_1:4788430-4788449 | None:intergenic | 25.0% |
| !!! | TACTTTTTGTCGTAAAGTTT+CGG | + | chr4_1:4788543-4788562 | Msa0530720:intron | 25.0% |
| !!! | ATATCATGATTTGTCCTTTT+CGG | + | chr4_1:4788679-4788698 | Msa0530720:intron | 25.0% |
| ! | GAACAAGTAAATGAATAGTT+AGG | - | chr4_1:4788739-4788758 | None:intergenic | 25.0% |
| !! | TTCCCGATTAATTTGAAATA+CGG | + | chr4_1:4789037-4789056 | Msa0530720:intron | 25.0% |
| ! | TTCCGTATTTCAAATTAATC+GGG | - | chr4_1:4789042-4789061 | None:intergenic | 25.0% |
| ! | CATTGTATGAAATGTCAAAT+TGG | - | chr4_1:4789099-4789118 | None:intergenic | 25.0% |
| ! | TGAAACAATTGTTTATATGG+AGG | - | chr4_1:4789122-4789141 | None:intergenic | 25.0% |
| ! | TTGTATGTGAAAGAAAGTAA+TGG | - | chr4_1:4789194-4789213 | None:intergenic | 25.0% |
| !! | CATAGTAGTTTGATAATTTC+CGG | + | chr4_1:4789268-4789287 | Msa0530720:intron | 25.0% |
| !! | AACTCTATATGTTGATAAGA+TGG | + | chr4_1:4789558-4789577 | Msa0530720:CDS | 25.0% |
| ATTCTTCTATGGAACACAAT+AGG | - | chr4_1:4786407-4786426 | None:intergenic | 30.0% | |
| CTGTAAGAAAATCACGATAA+GGG | - | chr4_1:4786453-4786472 | None:intergenic | 30.0% | |
| TCTGTAAGAAAATCACGATA+AGG | - | chr4_1:4786454-4786473 | None:intergenic | 30.0% | |
| GAGAGATATTCAGAAAATGA+AGG | + | chr4_1:4786472-4786491 | Msa0530720:exon | 30.0% | |
| TATTCAGAAAATGAAGGCTA+TGG | + | chr4_1:4786478-4786497 | Msa0530720:exon | 30.0% | |
| !!! | AAAGAGAGAGTTTTTGGTTA+TGG | - | chr4_1:4786537-4786556 | None:intergenic | 30.0% |
| ! | AAGTGTAAAGAGAGAGTTTT+TGG | - | chr4_1:4786543-4786562 | None:intergenic | 30.0% |
| AAATGGTGATAGAGATAATG+GGG | - | chr4_1:4786576-4786595 | None:intergenic | 30.0% | |
| GAAAATGGTGATAGAGATAA+TGG | - | chr4_1:4786578-4786597 | None:intergenic | 30.0% | |
| TAAGGTTAAAGTTAATGGTG+GGG | - | chr4_1:4786606-4786625 | None:intergenic | 30.0% | |
| GATAAGGTTAAAGTTAATGG+TGG | - | chr4_1:4786608-4786627 | None:intergenic | 30.0% | |
| TTGAGAAGATGAAGATGATA+AGG | - | chr4_1:4786624-4786643 | None:intergenic | 30.0% | |
| TTATCAGACATTATCTCACT+AGG | - | chr4_1:4786785-4786804 | None:intergenic | 30.0% | |
| ATGATATGATTAGGGTTATG+AGG | + | chr4_1:4786822-4786841 | Msa0530720:CDS | 30.0% | |
| CCATATGAAAAAGACTAGTA+TGG | - | chr4_1:4787369-4787388 | None:intergenic | 30.0% | |
| !!! | CCATACTAGTCTTTTTCATA+TGG | + | chr4_1:4787366-4787385 | Msa0530720:intron | 30.0% |
| !! | CGCTTAATTTATTTTCGTGT+TGG | - | chr4_1:4787481-4787500 | None:intergenic | 30.0% |
| ! | TCTCTCTAATGTTGTCATTT+CGG | - | chr4_1:4787559-4787578 | None:intergenic | 30.0% |
| ! | TCTACCATCTTTTCAACTAT+AGG | - | chr4_1:4787596-4787615 | None:intergenic | 30.0% |
| TCAGAGACGAGATAATTTAA+GGG | - | chr4_1:4787905-4787924 | None:intergenic | 30.0% | |
| TTCAGAGACGAGATAATTTA+AGG | - | chr4_1:4787906-4787925 | None:intergenic | 30.0% | |
| TGAGAATGCTCTACAATTTA+AGG | + | chr4_1:4788015-4788034 | Msa0530720:intron | 30.0% | |
| TCAATATATTGAAGGAGCTA+AGG | + | chr4_1:4788065-4788084 | Msa0530720:intron | 30.0% | |
| TGTTACCACACTTCAAATAA+AGG | + | chr4_1:4788119-4788138 | Msa0530720:intron | 30.0% | |
| ! | CTATTCCTTTATTTGAAGTG+TGG | - | chr4_1:4788127-4788146 | None:intergenic | 30.0% |
| CACACTTCAAATAAAGGAAT+AGG | + | chr4_1:4788125-4788144 | Msa0530720:intron | 30.0% | |
| CTTCAAATAAAGGAATAGGA+AGG | + | chr4_1:4788129-4788148 | Msa0530720:intron | 30.0% | |
| GCTTATGACAACTATAATGT+TGG | + | chr4_1:4788273-4788292 | Msa0530720:intron | 30.0% | |
| ! | CACTATGCAGATAATTGTTT+TGG | + | chr4_1:4788398-4788417 | Msa0530720:intron | 30.0% |
| ATTTATTAGTTATGCCCCAA+AGG | + | chr4_1:4788434-4788453 | Msa0530720:CDS | 30.0% | |
| ! | TAGACATCCTTTTGATCTTT+TGG | + | chr4_1:4788476-4788495 | Msa0530720:CDS | 30.0% |
| GAACATACCAAAAGATCAAA+AGG | - | chr4_1:4788486-4788505 | None:intergenic | 30.0% | |
| TTACTTGTGTTGTCTAATAG+CGG | + | chr4_1:4788846-4788865 | Msa0530720:intron | 30.0% | |
| CAAATTAATCGGGAAAAAGT+GGG | - | chr4_1:4789032-4789051 | None:intergenic | 30.0% | |
| TCAAATTAATCGGGAAAAAG+TGG | - | chr4_1:4789033-4789052 | None:intergenic | 30.0% | |
| AGCATAAGCAGATTAATTTC+CGG | - | chr4_1:4789290-4789309 | None:intergenic | 30.0% | |
| TTAATCTGCTTATGCTTAGA+TGG | + | chr4_1:4789294-4789313 | Msa0530720:intron | 30.0% | |
| !! | ATAACATTTTGCAGTGTTGA+TGG | + | chr4_1:4789403-4789422 | Msa0530720:intron | 30.0% |
| ACATTCATGTTGTAAAATCC+GGG | - | chr4_1:4789524-4789543 | None:intergenic | 30.0% | |
| CACATTCATGTTGTAAAATC+CGG | - | chr4_1:4789525-4789544 | None:intergenic | 30.0% | |
| ! | TTGAATCTGGTCTCAATTTT+AGG | - | chr4_1:4789750-4789769 | None:intergenic | 30.0% |
| ATAATTCGGCATACAAAATG+AGG | - | chr4_1:4789814-4789833 | None:intergenic | 30.0% | |
| AAACGACTTATCATGGAAAA+GGG | - | chr4_1:4789854-4789873 | None:intergenic | 30.0% | |
| AAAAATTTCTTAGGTCTGCA+AGG | + | chr4_1:4789906-4789925 | Msa0530720:three_prime_UTR | 30.0% | |
| AAGAAAATCACGATAAGGGT+GGG | - | chr4_1:4786449-4786468 | None:intergenic | 35.0% | |
| TAAGAAAATCACGATAAGGG+TGG | - | chr4_1:4786450-4786469 | None:intergenic | 35.0% | |
| CTATGGAAGCTTTACACTTA+CGG | + | chr4_1:4786495-4786514 | Msa0530720:CDS | 35.0% | |
| !!! | GAGTTTTTGGTTATGGATAG+TGG | - | chr4_1:4786530-4786549 | None:intergenic | 35.0% |
| AAGGTTAAAGTTAATGGTGG+GGG | - | chr4_1:4786605-4786624 | None:intergenic | 35.0% | |
| AAACTGCTACTGTAAGAACA+AGG | + | chr4_1:4786642-4786661 | Msa0530720:CDS | 35.0% | |
| AACTGCTACTGTAAGAACAA+GGG | + | chr4_1:4786643-4786662 | Msa0530720:CDS | 35.0% | |
| !!! | ACAAGGGCAGGTTTTTTTTT+TGG | + | chr4_1:4786659-4786678 | Msa0530720:CDS | 35.0% |
| TCAGATTGGAGTTTCTTCTA+GGG | + | chr4_1:4786874-4786893 | Msa0530720:CDS | 35.0% | |
| TGATTAAACGTAACCGTATG+AGG | + | chr4_1:4786968-4786987 | Msa0530720:intron | 35.0% | |
| GATTAAACGTAACCGTATGA+GGG | + | chr4_1:4786969-4786988 | Msa0530720:intron | 35.0% | |
| ATTAAACGTAACCGTATGAG+GGG | + | chr4_1:4786970-4786989 | Msa0530720:intron | 35.0% | |
| TGTTGTCATGTGACTGAAAA+TGG | + | chr4_1:4787017-4787036 | Msa0530720:intron | 35.0% | |
| GTTGTCATGTGACTGAAAAT+GGG | + | chr4_1:4787018-4787037 | Msa0530720:intron | 35.0% | |
| GATACATATAAAAGGCAAGC+TGG | - | chr4_1:4787102-4787121 | None:intergenic | 35.0% | |
| GTATCAGTCATATGTATGAG+TGG | + | chr4_1:4787117-4787136 | Msa0530720:intron | 35.0% | |
| CATATGTATGAGTGGTATGT+CGG | + | chr4_1:4787125-4787144 | Msa0530720:intron | 35.0% | |
| ! | AGCCGAAGGTAAAATTTTAC+CGG | + | chr4_1:4787401-4787420 | Msa0530720:intron | 35.0% |
| ! | GTCCGGTAAAATTTTACCTT+CGG | - | chr4_1:4787406-4787425 | None:intergenic | 35.0% |
| GTTGTACGGACATAGAATAT+TGG | + | chr4_1:4787444-4787463 | Msa0530720:intron | 35.0% | |
| ACAACATTAGAGAGAGAGTT+GGG | + | chr4_1:4787564-4787583 | Msa0530720:intron | 35.0% | |
| AGCACCTATAGTTGAAAAGA+TGG | + | chr4_1:4787589-4787608 | Msa0530720:intron | 35.0% | |
| AGATGGTAGAAACTAGACTT+AGG | + | chr4_1:4787606-4787625 | Msa0530720:intron | 35.0% | |
| AAACTAGACTTAGGTGGTTT+AGG | + | chr4_1:4787615-4787634 | Msa0530720:intron | 35.0% | |
| AACTTGTGGATTCTGTAGTT+AGG | + | chr4_1:4787651-4787670 | Msa0530720:intron | 35.0% | |
| !!! | GGTTCTCTTATGCTTTTTCT+AGG | - | chr4_1:4787725-4787744 | None:intergenic | 35.0% |
| CATAAGAGAACCTATCAAGA+AGG | + | chr4_1:4787733-4787752 | Msa0530720:intron | 35.0% | |
| ATCTCTAGATCCTTCTTGAT+AGG | - | chr4_1:4787746-4787765 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | + | chr4_1:4787754-4787773 | Msa0530720:intron | 35.0% | |
| ! | TGGTTTTTGATGGAGCAATA+CGG | + | chr4_1:4787786-4787805 | Msa0530720:intron | 35.0% |
| ATTGAAGGAGCTAAGGTAAT+TGG | + | chr4_1:4788072-4788091 | Msa0530720:intron | 35.0% | |
| ! | ATTTTGTTAACGCTGAGAAG+TGG | + | chr4_1:4788218-4788237 | Msa0530720:intron | 35.0% |
| ! | TTTTGTTAACGCTGAGAAGT+GGG | + | chr4_1:4788219-4788238 | Msa0530720:intron | 35.0% |
| CAAACACCCTTCAAAAAACA+GGG | - | chr4_1:4788655-4788674 | None:intergenic | 35.0% | |
| TCAAACACCCTTCAAAAAAC+AGG | - | chr4_1:4788656-4788675 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGAAGGGTGTTTG+AGG | + | chr4_1:4788655-4788674 | Msa0530720:CDS | 35.0% |
| ACAAAGATGGAAAACCGAAA+AGG | - | chr4_1:4788696-4788715 | None:intergenic | 35.0% | |
| AGTGTGGTAAGAAACAAAGA+TGG | - | chr4_1:4788709-4788728 | None:intergenic | 35.0% | |
| ATAGTTAGGCAAATCAAGTG+TGG | - | chr4_1:4788725-4788744 | None:intergenic | 35.0% | |
| GAAATGGTCAATAGCCTATT+GGG | - | chr4_1:4788961-4788980 | None:intergenic | 35.0% | |
| TGAAATGGTCAATAGCCTAT+TGG | - | chr4_1:4788962-4788981 | None:intergenic | 35.0% | |
| ATTGACCATTTCACGACTAA+TGG | + | chr4_1:4788969-4788988 | Msa0530720:intron | 35.0% | |
| TTTAGCCATTAGTCGTGAAA+TGG | - | chr4_1:4788977-4788996 | None:intergenic | 35.0% | |
| !!! | CCAGAAGCAGTTATTTTGAT+TGG | - | chr4_1:4789493-4789512 | None:intergenic | 35.0% |
| CCAATCAAAATAACTGCTTC+TGG | + | chr4_1:4789490-4789509 | Msa0530720:CDS | 35.0% | |
| TCAAAATAACTGCTTCTGGT+TGG | + | chr4_1:4789494-4789513 | Msa0530720:CDS | 35.0% | |
| ACAACATGAATGTGATCACT+TGG | + | chr4_1:4789531-4789550 | Msa0530720:CDS | 35.0% | |
| TTTCAGAACCGTAGAAAACA+TGG | + | chr4_1:4789591-4789610 | Msa0530720:CDS | 35.0% | |
| CAAAATGAGGCAGATTTCAT+CGG | - | chr4_1:4789801-4789820 | None:intergenic | 35.0% | |
| GAAACGACTTATCATGGAAA+AGG | - | chr4_1:4789855-4789874 | None:intergenic | 35.0% | |
| TTTCCATGATAAGTCGTTTC+AGG | + | chr4_1:4789855-4789874 | Msa0530720:three_prime_UTR | 35.0% | |
| CTTGCATTAAAGCTGAGAAA+TGG | - | chr4_1:4789952-4789971 | None:intergenic | 35.0% | |
| !!! | AATGGTGGGGGTTTTGAAAA+TGG | - | chr4_1:4786593-4786612 | None:intergenic | 40.0% |
| TTGCCTGATACTGTTAAAGC+TGG | + | chr4_1:4786722-4786741 | Msa0530720:CDS | 40.0% | |
| ! | TCACCAGCTTTAACAGTATC+AGG | - | chr4_1:4786728-4786747 | None:intergenic | 40.0% |
| CTAGAAGAAACTCCAATCTG+AGG | - | chr4_1:4786875-4786894 | None:intergenic | 40.0% | |
| CTCAGATTGGAGTTTCTTCT+AGG | + | chr4_1:4786873-4786892 | Msa0530720:CDS | 40.0% | |
| AGCCTCTTGCGTAAAAAACA+GGG | + | chr4_1:4787057-4787076 | Msa0530720:intron | 40.0% | |
| !!! | TACCCTGTTTTTTACGCAAG+AGG | - | chr4_1:4787062-4787081 | None:intergenic | 40.0% |
| CTTGCGTAAAAAACAGGGTA+AGG | + | chr4_1:4787062-4787081 | Msa0530720:intron | 40.0% | |
| !! | TCGCTAGTCTTACAATTGTC+CGG | - | chr4_1:4787423-4787442 | None:intergenic | 40.0% |
| GTAAGACTAGCGATGTTGTA+CGG | + | chr4_1:4787430-4787449 | Msa0530720:intron | 40.0% | |
| TAAGCGTAGCAGAGTTTAAG+AGG | + | chr4_1:4787495-4787514 | Msa0530720:intron | 40.0% | |
| GACAACATTAGAGAGAGAGT+TGG | + | chr4_1:4787563-4787582 | Msa0530720:intron | 40.0% | |
| CAACATTAGAGAGAGAGTTG+GGG | + | chr4_1:4787565-4787584 | Msa0530720:intron | 40.0% | |
| TGGTAGAAACTAGACTTAGG+TGG | + | chr4_1:4787609-4787628 | Msa0530720:intron | 40.0% | |
| GCATGTAGAGAGAAAACTTG+TGG | + | chr4_1:4787637-4787656 | Msa0530720:intron | 40.0% | |
| AGTTAGGAGAGTAGATCAGA+TGG | + | chr4_1:4787667-4787686 | Msa0530720:intron | 40.0% | |
| TAGGAAGGAAACGAAGCAAA+AGG | + | chr4_1:4788144-4788163 | Msa0530720:intron | 40.0% | |
| AGGAAGGAAACGAAGCAAAA+GGG | + | chr4_1:4788145-4788164 | Msa0530720:intron | 40.0% | |
| !! | TTCATTGGTTCTCTTGTTGC+AGG | + | chr4_1:4788587-4788606 | Msa0530720:intron | 40.0% |
| ! | TTGTTATTGTTCCGCCATAC+AGG | + | chr4_1:4788905-4788924 | Msa0530720:intron | 40.0% |
| TCAGTGTTGTCAATCCTGTA+TGG | - | chr4_1:4788922-4788941 | None:intergenic | 40.0% | |
| GAAAAAGTGGGATACGATGT+TGG | - | chr4_1:4789020-4789039 | None:intergenic | 40.0% | |
| TTAATGGTGCCCTAGATTGA+AGG | - | chr4_1:4789367-4789386 | None:intergenic | 40.0% | |
| !! | TGTTGATGGATTTAGAGCTG+TGG | + | chr4_1:4789417-4789436 | Msa0530720:CDS | 40.0% |
| AACCTGTAACTTCAACGTCA+AGG | - | chr4_1:4789453-4789472 | None:intergenic | 40.0% | |
| TGACGTTGAAGTTACAGGTT+TGG | + | chr4_1:4789453-4789472 | Msa0530720:CDS | 40.0% | |
| CATGAATGTGATCACTTGGA+TGG | + | chr4_1:4789535-4789554 | Msa0530720:CDS | 40.0% | |
| !! | TCTACGGTTCTGAAAGTTCT+AGG | - | chr4_1:4789586-4789605 | None:intergenic | 40.0% |
| TTGCCTGAAACGACTTATCA+TGG | - | chr4_1:4789861-4789880 | None:intergenic | 40.0% | |
| ! | CACGATAAGGGTGGGTTTAT+GGG | - | chr4_1:4786441-4786460 | None:intergenic | 45.0% |
| ! | TCACGATAAGGGTGGGTTTA+TGG | - | chr4_1:4786442-4786461 | None:intergenic | 45.0% |
| GAGCAGGTTCATGAAGAACA+GGG | - | chr4_1:4786751-4786770 | None:intergenic | 45.0% | |
| TGAGCAGGTTCATGAAGAAC+AGG | - | chr4_1:4786752-4786771 | None:intergenic | 45.0% | |
| CTAGGATCAACTTCTTGAGC+AGG | - | chr4_1:4786767-4786786 | None:intergenic | 45.0% | |
| CAACTTTATCAGTTGCGCCA+AGG | - | chr4_1:4786999-4787018 | None:intergenic | 45.0% | |
| ! | CTGAAAATGGGTTCAAGTCC+TGG | + | chr4_1:4787030-4787049 | Msa0530720:intron | 45.0% |
| CAGCCTCTTGCGTAAAAAAC+AGG | + | chr4_1:4787056-4787075 | Msa0530720:intron | 45.0% | |
| AAGAGGTTGCGTTGAATGTG+TGG | + | chr4_1:4787512-4787531 | Msa0530720:intron | 45.0% | |
| TAGGAGAGTAGATCAGATGG+AGG | + | chr4_1:4787670-4787689 | Msa0530720:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | + | chr4_1:4787671-4787690 | Msa0530720:intron | 45.0% | |
| GAGGGGAGTTAAATCACTAG+AGG | + | chr4_1:4787689-4787708 | Msa0530720:intron | 45.0% | |
| ! | AAGCCTTATCCCATTGACTG+GGG | - | chr4_1:4787835-4787854 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCATTGACT+GGG | - | chr4_1:4787836-4787855 | None:intergenic | 45.0% |
| GGAAGGAAACGAAGCAAAAG+GGG | + | chr4_1:4788146-4788165 | Msa0530720:intron | 45.0% | |
| AGCTATGAGCACTTCCTTTG+GGG | - | chr4_1:4788451-4788470 | None:intergenic | 45.0% | |
| GAGCTATGAGCACTTCCTTT+GGG | - | chr4_1:4788452-4788471 | None:intergenic | 45.0% | |
| TGAGCTATGAGCACTTCCTT+TGG | - | chr4_1:4788453-4788472 | None:intergenic | 45.0% | |
| !!! | AGGACTGCCCTGTTTTTTGA+AGG | + | chr4_1:4788645-4788664 | Msa0530720:CDS | 45.0% |
| !!! | GGACTGCCCTGTTTTTTGAA+GGG | + | chr4_1:4788646-4788665 | Msa0530720:CDS | 45.0% |
| GTGTTGTCAATCCTGTATGG+CGG | - | chr4_1:4788919-4788938 | None:intergenic | 45.0% | |
| TCAATAGCCTATTGGGAGTC+GGG | - | chr4_1:4788954-4788973 | None:intergenic | 45.0% | |
| GTCAATAGCCTATTGGGAGT+CGG | - | chr4_1:4788955-4788974 | None:intergenic | 45.0% | |
| CTCAACTCACTGATAGCTCT+TGG | + | chr4_1:4789219-4789238 | Msa0530720:intron | 45.0% | |
| ACTCACTGATAGCTCTTGGT+TGG | + | chr4_1:4789223-4789242 | Msa0530720:intron | 45.0% | |
| CGTGAGAAAAAACGTGTACG+CGG | + | chr4_1:4789340-4789359 | Msa0530720:intron | 45.0% | |
| !! | TGATGGATTTAGAGCTGTGG+TGG | + | chr4_1:4789420-4789439 | Msa0530720:CDS | 45.0% |
| CACCTTGACGTTGAAGTTAC+AGG | + | chr4_1:4789448-4789467 | Msa0530720:CDS | 45.0% | |
| GTTACAGGTTTGGATCGCAA+TGG | + | chr4_1:4789463-4789482 | Msa0530720:CDS | 45.0% | |
| ! | AATAACTGCTTCTGGTTGGC+AGG | + | chr4_1:4789498-4789517 | Msa0530720:CDS | 45.0% |
| ! | AGGCAGGTCCATGTTTTCTA+CGG | - | chr4_1:4789602-4789621 | None:intergenic | 45.0% |
| ! | TGTGTTGACAGCCTTATCAG+AGG | - | chr4_1:4789686-4789705 | None:intergenic | 45.0% |
| TCTGATAAGGCTGTCAACAC+AGG | + | chr4_1:4789685-4789704 | Msa0530720:three_prime_UTR | 45.0% | |
| GCTACTGTAAGAACAAGGGC+AGG | + | chr4_1:4786647-4786666 | Msa0530720:CDS | 50.0% | |
| AGGGTTATGAGGAAAGCTCC+TGG | + | chr4_1:4786833-4786852 | Msa0530720:CDS | 50.0% | |
| ATGAGGAAAGCTCCTGGTGT+TGG | + | chr4_1:4786839-4786858 | Msa0530720:CDS | 50.0% | |
| GGTTTAGCTGCTCCTCAGAT+TGG | + | chr4_1:4786860-4786879 | Msa0530720:CDS | 50.0% | |
| AACCGTATGAGGGGTAACCT+TGG | + | chr4_1:4786979-4786998 | Msa0530720:intron | 50.0% | |
| ! | TTACGCAAGAGGCTGTTTCC+AGG | - | chr4_1:4787051-4787070 | None:intergenic | 50.0% |
| GCACTGCAGCTTCAGATTGA+AGG | - | chr4_1:4787156-4787175 | None:intergenic | 50.0% | |
| GTGGCAAGACTAGACGTGAT+AGG | + | chr4_1:4787531-4787550 | Msa0530720:intron | 50.0% | |
| GGAGAGTAGATCAGATGGAG+GGG | + | chr4_1:4787672-4787691 | Msa0530720:intron | 50.0% | |
| ATGTAGCCAACCCCAGTCAA+TGG | + | chr4_1:4787822-4787841 | Msa0530720:intron | 50.0% | |
| TGTAGCCAACCCCAGTCAAT+GGG | + | chr4_1:4787823-4787842 | Msa0530720:intron | 50.0% | |
| ! | CTTATCCCATTGACTGGGGT+TGG | - | chr4_1:4787831-4787850 | None:intergenic | 50.0% |
| CAACCCCAGTCAATGGGATA+AGG | + | chr4_1:4787829-4787848 | Msa0530720:intron | 50.0% | |
| ! | CCAAGCCTTATCCCATTGAC+TGG | - | chr4_1:4787837-4787856 | None:intergenic | 50.0% |
| CCAGTCAATGGGATAAGGCT+TGG | + | chr4_1:4787834-4787853 | Msa0530720:intron | 50.0% | |
| TTGCTCGTACTCTTCAGCCT+GGG | - | chr4_1:4788624-4788643 | None:intergenic | 50.0% | |
| TTTGCTCGTACTCTTCAGCC+TGG | - | chr4_1:4788625-4788644 | None:intergenic | 50.0% | |
| ! | GGCTGAAGAGTACGAGCAAA+AGG | + | chr4_1:4788625-4788644 | Msa0530720:CDS | 50.0% |
| TTTACCTCCCGACTCCCAAT+AGG | + | chr4_1:4788944-4788963 | Msa0530720:intron | 50.0% | |
| TGTACGCGGTCCTTCAATCT+AGG | + | chr4_1:4789354-4789373 | Msa0530720:intron | 50.0% | |
| GTACGCGGTCCTTCAATCTA+GGG | + | chr4_1:4789355-4789374 | Msa0530720:intron | 50.0% | |
| CCCAAAACATGCGTTACCGA+GGG | - | chr4_1:4789651-4789670 | None:intergenic | 50.0% | |
| ! | CCCTCGGTAACGCATGTTTT+GGG | + | chr4_1:4789648-4789667 | Msa0530720:exon | 50.0% |
| TCCCAAAACATGCGTTACCG+AGG | - | chr4_1:4789652-4789671 | None:intergenic | 50.0% | |
| CATTGCTGCTGCCTCTGATA+AGG | + | chr4_1:4789672-4789691 | Msa0530720:three_prime_UTR | 50.0% | |
| GGAGCAGCTAAACCAACACC+AGG | - | chr4_1:4786854-4786873 | None:intergenic | 55.0% | |
| CGCCAAGGTTACCCCTCATA+CGG | - | chr4_1:4786984-4787003 | None:intergenic | 55.0% | |
| !! | GGAAGTACTGCTCAAGCCGA+AGG | + | chr4_1:4787387-4787406 | Msa0530720:intron | 55.0% |
| TGCAGGTGATCGTGAATCCC+AGG | + | chr4_1:4788604-4788623 | Msa0530720:intron | 55.0% | |
| ATAGCCTATTGGGAGTCGGG+AGG | - | chr4_1:4788951-4788970 | None:intergenic | 55.0% | |
| ATGGACCTGCCTCTTGCTCA+GGG | + | chr4_1:4789610-4789629 | Msa0530720:CDS | 55.0% | |
| GTTACCGAGGGCCAAGTTTC+GGG | - | chr4_1:4789639-4789658 | None:intergenic | 55.0% | |
| CGTTACCGAGGGCCAAGTTT+CGG | - | chr4_1:4789640-4789659 | None:intergenic | 55.0% | |
| ! | GCCCTCGGTAACGCATGTTT+TGG | + | chr4_1:4789647-4789666 | Msa0530720:exon | 55.0% |
| CATGGACCTGCCTCTTGCTC+AGG | + | chr4_1:4789609-4789628 | Msa0530720:CDS | 60.0% | |
| TTCGGGCATCCCTGAGCAAG+AGG | - | chr4_1:4789622-4789641 | None:intergenic | 60.0% | |
| GCTCAGGGATGCCCGAAACT+TGG | + | chr4_1:4789625-4789644 | Msa0530720:CDS | 60.0% | |
| GATGCCCGAAACTTGGCCCT+CGG | + | chr4_1:4789632-4789651 | Msa0530720:CDS | 60.0% | |
| ! | CTGCTTCTGGTTGGCAGGCC+CGG | + | chr4_1:4789503-4789522 | Msa0530720:CDS | 65.0% |
| GGCATCCCTGAGCAAGAGGC+AGG | - | chr4_1:4789618-4789637 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4786393 | 4789998 | 4786393 | ID=Msa0530720;Name=Msa0530720 |
| chr4_1 | mRNA | 4786393 | 4789998 | 4786393 | ID=Msa0530720-mRNA-1;Parent=Msa0530720;Name=Msa0530720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|1|1|1|1|1|4|341|268 |
| chr4_1 | exon | 4786393 | 4786895 | 4786393 | ID=Msa0530720-mRNA-1:exon:1458;Parent=Msa0530720-mRNA-1 |
| chr4_1 | exon | 4788408 | 4788497 | 4788408 | ID=Msa0530720-mRNA-1:exon:1459;Parent=Msa0530720-mRNA-1 |
| chr4_1 | exon | 4788609 | 4788676 | 4788609 | ID=Msa0530720-mRNA-1:exon:1460;Parent=Msa0530720-mRNA-1 |
| chr4_1 | exon | 4789417 | 4789998 | 4789417 | ID=Msa0530720-mRNA-1:exon:1461;Parent=Msa0530720-mRNA-1 |
| chr4_1 | five_prime_UTR | 4786393 | 4786487 | 4786393 | ID=Msa0530720-mRNA-1:five_prime_utr;Parent=Msa0530720-mRNA-1 |
| chr4_1 | CDS | 4786488 | 4786895 | 4786488 | ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1 |
| chr4_1 | CDS | 4788408 | 4788497 | 4788408 | ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1 |
| chr4_1 | CDS | 4788609 | 4788676 | 4788609 | ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1 |
| chr4_1 | CDS | 4789417 | 4789657 | 4789417 | ID=Msa0530720-mRNA-1:cds;Parent=Msa0530720-mRNA-1 |
| chr4_1 | three_prime_UTR | 4789658 | 4789998 | 4789658 | ID=Msa0530720-mRNA-1:three_prime_utr;Parent=Msa0530720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
