AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500700 MtrunA17_Chr3g0133851 96.414 251 9 0 1 251 1 251 0.0 503
Msa0500700 MtrunA17_Chr8g0377831 40.254 236 111 7 20 240 16 236 4.68e-47 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500700 AT4G33350.1 64.179 268 75 5 1 250 1 265 6.92e-119 340
Msa0500700 AT4G33350.2 57.463 268 67 5 1 250 1 239 6.02e-101 294
Msa0500700 AT3G23710.1 42.211 199 101 6 52 240 109 303 3.63e-44 151
Msa0500700 AT3G23710.2 42.143 140 77 2 52 187 109 248 2.17e-30 114

Find 87 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATGTTTATTTCAGTTTA+AGG 0.126504 3_4:+41247535 Msa0500700:three_prime_UTR
TTCATGCAGATACTGCTTTA+AGG 0.144225 3_4:+41247478 Msa0500700:intron
TTGCAGGTGTTTGAACTATT+TGG 0.187405 3_4:+41247738 Msa0500700:three_prime_UTR
ACTACCTGTTCAAGAGTTAT+TGG 0.204138 3_4:-41244465 None:intergenic
TACCAGATCCACTTCAAATA+AGG 0.261652 3_4:+41245122 Msa0500700:CDS
TCAACATATACAAGAAATTA+AGG 0.262989 3_4:+41247286 Msa0500700:CDS
AATAAGTTTAATTACTTTGC+AGG 0.264989 3_4:+41247722 Msa0500700:three_prime_UTR
ACCACATAAAACTATTACTA+TGG 0.299237 3_4:-41247339 None:intergenic
TGCGAGTGTGAGATTGAATT+AGG 0.307685 3_4:-41244129 None:intergenic
GGAAAGCTTCAGCGTCTTCT+TGG 0.311162 3_4:-41244303 None:intergenic
GGAGGTTCCGGCGAGGGATT+TGG 0.319748 3_4:-41244194 None:intergenic
TATTGAACAGGAACTATCTA+AGG 0.328688 3_4:+41246512 Msa0500700:CDS
TTAAGGGAGGTCTATGGATA+TGG 0.354872 3_4:+41247689 Msa0500700:three_prime_UTR
AGGAACTATCTAAGGTTTCC+AGG 0.374565 3_4:+41246520 Msa0500700:CDS
GAGGTCTATGGATATGGATT+TGG 0.375732 3_4:+41247695 Msa0500700:three_prime_UTR
TCCATCAAAACCTTCCTTGC+TGG 0.381167 3_4:-41245432 None:intergenic
CAGATGAGTGAAAAGAATTC+CGG 0.382067 3_4:+41247221 Msa0500700:intron
TTGCCCTGTATATTTCTCTA+AGG 0.385806 3_4:+41245865 Msa0500700:CDS
ATTCTATACCATTATTTGCT+TGG 0.386433 3_4:-41246565 None:intergenic
TTCCTTATTTGAAGTGGATC+TGG 0.389220 3_4:-41245124 None:intergenic
CAAGGTGGTTACAGTGTTGA+TGG 0.389724 3_4:-41244069 None:intergenic
TCGGATTCTGTCTTAATTGT+GGG 0.393939 3_4:-41243933 None:intergenic
CACGAGTTAAGGGAGGTCTA+TGG 0.396337 3_4:+41247683 Msa0500700:three_prime_UTR
CGCTGAAGCTTTCCTTGCTC+AGG 0.397790 3_4:+41244312 Msa0500700:CDS
CAATGTTTATTTCAGTTTAA+GGG 0.400376 3_4:+41247536 Msa0500700:three_prime_UTR
CTCGGATTCTGTCTTAATTG+TGG 0.407460 3_4:-41243934 None:intergenic
CAAACCTTAGAGAAATATAC+AGG 0.430319 3_4:-41245869 None:intergenic
GTTAAAGCGGCGGCGAAAGC+GGG 0.432701 3_4:-41244157 None:intergenic
TGTTCCAATAACTCTTGAAC+AGG 0.433983 3_4:+41244461 Msa0500700:CDS
GTGAGATTGAATTAGGGTTC+CGG 0.435865 3_4:-41244122 None:intergenic
GTTGACTCATTCTTGTCAGC+TGG 0.440922 3_4:+41247387 Msa0500700:three_prime_UTR
TATATGTGAGAGGGCATTAC+GGG 0.449414 3_4:+41247513 Msa0500700:three_prime_UTR
TGGAGTTTCCAAGCAAATAA+TGG 0.452005 3_4:+41246557 Msa0500700:CDS
GACGGTGTAAACGGAGGTTC+CGG 0.452524 3_4:-41244206 None:intergenic
GCGAGTGTGAGATTGAATTA+GGG 0.455909 3_4:-41244128 None:intergenic
AGCGGCGGCGAAAGCGGGGT+TGG 0.456106 3_4:-41244152 None:intergenic
CTCAGAGCCGCCAGCAAGGA+AGG 0.460599 3_4:+41245422 Msa0500700:CDS
GAGGGATTTGGCGACGTTGT+TGG 0.462263 3_4:-41244182 None:intergenic
GGAACTACTGACGGTGTAAA+CGG 0.467319 3_4:-41244215 None:intergenic
GTATACTTGTTGAAGGTTGA+AGG 0.475034 3_4:+41245082 Msa0500700:CDS
AGTGCATTCCTTATTTGAAG+TGG 0.479288 3_4:-41245130 None:intergenic
CAGGTGTTTGAACTATTTGG+AGG 0.482752 3_4:+41247741 Msa0500700:three_prime_UTR
GTTATAGGTATACTTGTTGA+AGG 0.482950 3_4:+41245075 Msa0500700:intron
CATCAGAACGAATTCATTGT+TGG 0.485434 3_4:-41244236 None:intergenic
TTAGCTTAAGTTTGCTCCCA+CGG 0.504552 3_4:-41247316 None:intergenic
TGGACAGGAAGATATTGAAC+AGG 0.507901 3_4:+41246500 Msa0500700:intron
GAAATTAAGGCTTAATTCCG+TGG 0.510348 3_4:+41247299 Msa0500700:exon
ATATATGTGAGAGGGCATTA+CGG 0.512955 3_4:+41247512 Msa0500700:three_prime_UTR
GAAGTGGATCTGGTAAGAAT+CGG 0.513973 3_4:-41245114 None:intergenic
ATTATTTGCTTGGAAACTCC+AGG 0.515291 3_4:-41246555 None:intergenic
GCTGAAGGTGCTAAGTCCAT+TGG 0.515881 3_4:+41244265 Msa0500700:CDS
ATTTCAGTTTAAGGGTCCCA+TGG 0.525510 3_4:+41247544 Msa0500700:three_prime_UTR
TTCATTGTTGGAACTACTGA+CGG 0.538242 3_4:-41244224 None:intergenic
GTTTATCCACGATCTAGTAA+AGG 0.539568 3_4:+41243963 Msa0500700:five_prime_UTR
TTTCTTGTATATGTTGAGAA+CGG 0.540120 3_4:-41247280 None:intergenic
TCCAGGGTATCTAAAAGTCC+TGG 0.546198 3_4:+41246537 Msa0500700:CDS
AAATTAAGGCTTAATTCCGT+GGG 0.566854 3_4:+41247300 Msa0500700:exon
TCTAATCCTTTACTAGATCG+TGG 0.567177 3_4:-41243969 None:intergenic
ACTTCAAATAAGGAATGCAC+TGG 0.568685 3_4:+41245132 Msa0500700:CDS
GTAAACGGAGGTTCCGGCGA+GGG 0.577581 3_4:-41244200 None:intergenic
GCGAAAGCAAAGCAATCCAA+TGG 0.584246 3_4:-41244281 None:intergenic
TGAATTTCGAGGCAATGCTA+AGG 0.584914 3_4:+41244437 Msa0500700:CDS
TGTCTTCAAAACGAGTTGCA+AGG 0.588693 3_4:-41244087 None:intergenic
AGTTAAAGCGGCGGCGAAAG+CGG 0.589283 3_4:-41244158 None:intergenic
ACTGCTTTAAGGATTTACAA+TGG 0.592283 3_4:+41247489 Msa0500700:three_prime_UTR
GGACTTAGCACCTTCAGCAT+CGG 0.600686 3_4:-41244260 None:intergenic
TACAATGGATATATGTGAGA+GGG 0.601524 3_4:+41247504 Msa0500700:three_prime_UTR
GACGTTGTTGGAAGTTAAAG+CGG 0.609660 3_4:-41244170 None:intergenic
GGAACTATCTAAGGTTTCCA+GGG 0.610500 3_4:+41246521 Msa0500700:CDS
TCGTGGATAAACTATAAGCT+CGG 0.613169 3_4:-41243952 None:intergenic
TCAGCTCAGAGCCGCCAGCA+AGG 0.614025 3_4:+41245418 Msa0500700:intron
TCAAATAAGGAATGCACTGG+AGG 0.614598 3_4:+41245135 Msa0500700:CDS
AGAGGAACGTTACCTGAGCA+AGG 0.617638 3_4:-41244324 None:intergenic
AACGTCGCCAAATCCCTCGC+CGG 0.619652 3_4:+41244187 Msa0500700:CDS
AACCGCGAAAATGATAGAAG+CGG 0.620119 3_4:-41244043 None:intergenic
TTAAAGCGGCGGCGAAAGCG+GGG 0.621674 3_4:-41244156 None:intergenic
GAGTGAAAAGAATTCCGGAT+GGG 0.636301 3_4:+41247226 Msa0500700:CDS
ATCAAAACCTTCCTTGCTGG+CGG 0.637557 3_4:-41245429 None:intergenic
TGAGTGAAAAGAATTCCGGA+TGG 0.637585 3_4:+41247225 Msa0500700:CDS
TTACAATGGATATATGTGAG+AGG 0.640775 3_4:+41247503 Msa0500700:three_prime_UTR
AAATGGAGTCACAAGGACAG+TGG 0.653796 3_4:+41244017 Msa0500700:exon
TGTAAACGGAGGTTCCGGCG+AGG 0.668767 3_4:-41244201 None:intergenic
GTTCTGATGTCCGATGCTGA+AGG 0.674395 3_4:+41244250 Msa0500700:CDS
GTTGTTGGAAGTTAAAGCGG+CGG 0.684073 3_4:-41244167 None:intergenic
CTTCAAAACGAGTTGCAAGG+TGG 0.698132 3_4:-41244084 None:intergenic
AAACCTTAGAGAAATATACA+GGG 0.722468 3_4:-41245868 None:intergenic
ACTACTGACGGTGTAAACGG+AGG 0.722610 3_4:-41244212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAGTTAAATTGTTTTT+TGG - chr3_4:41244731-41244750 None:intergenic 10.0%
!! ATTTCTAAATTAAAAATAGA+GGG - chr3_4:41245960-41245979 None:intergenic 10.0%
!! AATTTCTAAATTAAAAATAG+AGG - chr3_4:41245961-41245980 None:intergenic 10.0%
!!! TTTATGTTTCTTTAATTTTA+TGG + chr3_4:41246717-41246736 Msa0500700:intron 10.0%
!! ATTTCATTGATACATAAATT+AGG - chr3_4:41244843-41244862 None:intergenic 15.0%
!!! TATTTTTAATTACGCAATTT+TGG + chr3_4:41245992-41246011 Msa0500700:intron 15.0%
!! ATAATTTATCATTCATTTGA+AGG + chr3_4:41247032-41247051 Msa0500700:intron 15.0%
!! TTCAATTATGATAATTAAAC+AGG + chr3_4:41247074-41247093 Msa0500700:intron 15.0%
!! ATTGGTATAGTTAATAATAT+AGG + chr3_4:41247154-41247173 Msa0500700:intron 15.0%
!! ATTTGTAGAAGAAACAAAAA+TGG + chr3_4:41244000-41244019 Msa0500700:exon 20.0%
!!! ATAAATTTTGTTAAACCGTT+TGG + chr3_4:41244625-41244644 Msa0500700:intron 20.0%
!!! TAAATTTTGTTAAACCGTTT+GGG + chr3_4:41244626-41244645 Msa0500700:intron 20.0%
!! ATATAGATATGAATTCAAAG+GGG - chr3_4:41244880-41244899 None:intergenic 20.0%
!! CATATAGATATGAATTCAAA+GGG - chr3_4:41244881-41244900 None:intergenic 20.0%
!! CTTTGAATTCATATCTATAT+GGG + chr3_4:41244880-41244899 Msa0500700:intron 20.0%
!!! TTTTTGAAGCATAATAAGTA+TGG + chr3_4:41245016-41245035 Msa0500700:intron 20.0%
!!! TCAGTTTTAAATGTAAATCA+TGG + chr3_4:41245266-41245285 Msa0500700:intron 20.0%
!! AAATGTGATTATTAGTCAAT+AGG - chr3_4:41245799-41245818 None:intergenic 20.0%
!! TCATCATCATAGTTAAAAAT+TGG - chr3_4:41246038-41246057 None:intergenic 20.0%
!! ATCTTCATTGTTAAACATTT+AGG + chr3_4:41246316-41246335 Msa0500700:intron 20.0%
!! TCTTCATTGTTAAACATTTA+GGG + chr3_4:41246317-41246336 Msa0500700:intron 20.0%
!!! ATTTGTTTTAGTGCTATAAA+TGG + chr3_4:41246685-41246704 Msa0500700:intron 20.0%
!!! TATGGATAAAAACACATTTT+TGG + chr3_4:41246735-41246754 Msa0500700:intron 20.0%
!!! ATAAAAACACATTTTTGGAT+GGG + chr3_4:41246740-41246759 Msa0500700:intron 20.0%
!! AAAATTGAAATCAGAACATA+AGG - chr3_4:41246937-41246956 None:intergenic 20.0%
!! ATTATGATAATTAAACAGGT+TGG + chr3_4:41247078-41247097 Msa0500700:intron 20.0%
!!! TAATAGTAAAGTTTGCTTAT+TGG + chr3_4:41247136-41247155 Msa0500700:intron 20.0%
!! TAATAATATAGGAAGCAATT+TGG + chr3_4:41247165-41247184 Msa0500700:intron 20.0%
!! TCAACATATACAAGAAATTA+AGG + chr3_4:41247286-41247305 Msa0500700:CDS 20.0%
!! AAGAAAAGAAACTATTGTAA+GGG - chr3_4:41247431-41247450 None:intergenic 20.0%
!! AAAGAAAAGAAACTATTGTA+AGG - chr3_4:41247432-41247451 None:intergenic 20.0%
!! CAATGTTTATTTCAGTTTAA+GGG + chr3_4:41247536-41247555 Msa0500700:three_prime_UTR 20.0%
!! AATAAGTTTAATTACTTTGC+AGG + chr3_4:41247722-41247741 Msa0500700:three_prime_UTR 20.0%
! AAAAAACAAATTACTGAGAG+AGG - chr3_4:41244345-41244364 None:intergenic 25.0%
!!! GATTGCTTTTAATTCACTAA+GGG + chr3_4:41244579-41244598 Msa0500700:intron 25.0%
!! ACTGTTTTCATAAACTATCT+TGG - chr3_4:41244673-41244692 None:intergenic 25.0%
! ATACATAAATTAGGCACTTA+TGG - chr3_4:41244834-41244853 None:intergenic 25.0%
! TATAGATATGAATTCAAAGG+GGG - chr3_4:41244879-41244898 None:intergenic 25.0%
! CCATATAGATATGAATTCAA+AGG - chr3_4:41244882-41244901 None:intergenic 25.0%
! CCTTTGAATTCATATCTATA+TGG + chr3_4:41244879-41244898 Msa0500700:intron 25.0%
!!! CACACCTTTACTTTTAATAA+CGG + chr3_4:41244967-41244986 Msa0500700:intron 25.0%
!!! ACACCTTTACTTTTAATAAC+GGG + chr3_4:41244968-41244987 Msa0500700:intron 25.0%
! TTACCCGTTATTAAAAGTAA+AGG - chr3_4:41244974-41244993 None:intergenic 25.0%
!!! TTTACTTTTAATAACGGGTA+AGG + chr3_4:41244973-41244992 Msa0500700:intron 25.0%
!!! TTACTTTTAATAACGGGTAA+GGG + chr3_4:41244974-41244993 Msa0500700:intron 25.0%
!!! GATGATGAAAATACTAGTTT+TGG - chr3_4:41245204-41245223 None:intergenic 25.0%
!!! GTTTTAAATGTAAATCATGG+AGG + chr3_4:41245269-41245288 Msa0500700:intron 25.0%
! TATATCAGTAGCTATAAGTT+TGG + chr3_4:41245581-41245600 Msa0500700:intron 25.0%
! TAACATATAAATTCCAAGAC+TGG + chr3_4:41245671-41245690 Msa0500700:intron 25.0%
! CAGATACTAAAATAGTTTGA+TGG - chr3_4:41245712-41245731 None:intergenic 25.0%
! AAACCTTAGAGAAATATACA+GGG - chr3_4:41245871-41245890 None:intergenic 25.0%
! TGCGTAATTAAAAATATCGA+GGG - chr3_4:41245988-41246007 None:intergenic 25.0%
! TTGCGTAATTAAAAATATCG+AGG - chr3_4:41245989-41246008 None:intergenic 25.0%
! TGTGTAATACAAAAAACACT+CGG + chr3_4:41246239-41246258 Msa0500700:intron 25.0%
! GCTAGAATGAAATGAAAAAT+AGG + chr3_4:41246356-41246375 Msa0500700:intron 25.0%
! ATTAACCCTAAATCTTAGTT+AGG + chr3_4:41246425-41246444 Msa0500700:intron 25.0%
!! ATATGATAGTTTTCGTTTGT+TGG + chr3_4:41246472-41246491 Msa0500700:intron 25.0%
! ATTCTATACCATTATTTGCT+TGG - chr3_4:41246568-41246587 None:intergenic 25.0%
!!! GATAAAAACACATTTTTGGA+TGG + chr3_4:41246739-41246758 Msa0500700:intron 25.0%
!!! TTCAAATTGTTATTTTCGCA+TGG - chr3_4:41246772-41246791 None:intergenic 25.0%
!! ACATGTTTTCTTGAATAAAC+AGG + chr3_4:41246873-41246892 Msa0500700:intron 25.0%
!! CATGTTTTCTTGAATAAACA+GGG + chr3_4:41246874-41246893 Msa0500700:intron 25.0%
! TTTCTTGTATATGTTGAGAA+CGG - chr3_4:41247283-41247302 None:intergenic 25.0%
!!! ACCATAGTAATAGTTTTATG+TGG + chr3_4:41247338-41247357 Msa0500700:three_prime_UTR 25.0%
! ACCACATAAAACTATTACTA+TGG - chr3_4:41247342-41247361 None:intergenic 25.0%
! GCAATGTTTATTTCAGTTTA+AGG + chr3_4:41247535-41247554 Msa0500700:three_prime_UTR 25.0%
! TGAAAAAACTGTACATGAAT+TGG - chr3_4:41247620-41247639 None:intergenic 25.0%
!!! CATGTACAGTTTTTTCATTT+TGG + chr3_4:41247623-41247642 Msa0500700:three_prime_UTR 25.0%
!! AATGTTTTGCTCGTTGTTTT+AGG + chr3_4:41244398-41244417 Msa0500700:intron 30.0%
!! CGATTGCTTTTAATTCACTA+AGG + chr3_4:41244578-41244597 Msa0500700:intron 30.0%
ATGAAATAAGTTCTCCCAAA+CGG - chr3_4:41244643-41244662 None:intergenic 30.0%
!!! TACTTTTAATAACGGGTAAG+GGG + chr3_4:41244975-41244994 Msa0500700:intron 30.0%
!! TTCAAAAAGTATCTGATTGC+AGG - chr3_4:41245004-41245023 None:intergenic 30.0%
AGAAAAGTTGTTACAGATAC+AGG - chr3_4:41245049-41245068 None:intergenic 30.0%
AACAAGTATACCTATAACAC+AGG - chr3_4:41245073-41245092 None:intergenic 30.0%
! GTTATAGGTATACTTGTTGA+AGG + chr3_4:41245075-41245094 Msa0500700:intron 30.0%
TTGTGTGCAACAATTATAAC+CGG - chr3_4:41245167-41245186 None:intergenic 30.0%
TGTAAATCATGGAGGAAAAT+AGG + chr3_4:41245277-41245296 Msa0500700:intron 30.0%
AGAAAACATACCTGAAAAAC+AGG - chr3_4:41245461-41245480 None:intergenic 30.0%
! TCAGGTATGTTTTCTTACTT+TGG + chr3_4:41245466-41245485 Msa0500700:intron 30.0%
! AGTTCTTTAGAGGACTAATT+GGG + chr3_4:41245497-41245516 Msa0500700:intron 30.0%
ATATGTTACATACCATGCAT+TGG - chr3_4:41245659-41245678 None:intergenic 30.0%
ATTTATATCAGACTCCAGAT+GGG - chr3_4:41245735-41245754 None:intergenic 30.0%
TATTTATATCAGACTCCAGA+TGG - chr3_4:41245736-41245755 None:intergenic 30.0%
! TTGCTTACAGTCAGAATTTT+TGG + chr3_4:41245817-41245836 Msa0500700:intron 30.0%
CAAACCTTAGAGAAATATAC+AGG - chr3_4:41245872-41245891 None:intergenic 30.0%
TGCATATTGACCATAATAGA+GGG - chr3_4:41245930-41245949 None:intergenic 30.0%
TTGCATATTGACCATAATAG+AGG - chr3_4:41245931-41245950 None:intergenic 30.0%
! TAACTATGATGATGATGATG+TGG + chr3_4:41246043-41246062 Msa0500700:intron 30.0%
TAACAACTACACCAACTTAA+TGG + chr3_4:41246181-41246200 Msa0500700:intron 30.0%
AACAACTACACCAACTTAAT+GGG + chr3_4:41246182-41246201 Msa0500700:intron 30.0%
GTTTAACAATGAAGATGATG+CGG - chr3_4:41246312-41246331 None:intergenic 30.0%
! TTTAGGGTTAATTGCACTTA+TGG - chr3_4:41246417-41246436 None:intergenic 30.0%
ACATGCCTAACTAAGATTTA+GGG - chr3_4:41246433-41246452 None:intergenic 30.0%
TACATGCCTAACTAAGATTT+AGG - chr3_4:41246434-41246453 None:intergenic 30.0%
!! GTTTTCGTTTGTTGGTTAAA+TGG + chr3_4:41246480-41246499 Msa0500700:intron 30.0%
TATTGAACAGGAACTATCTA+AGG + chr3_4:41246512-41246531 Msa0500700:CDS 30.0%
! CTTCAGCATAATTGTTTTCA+AGG - chr3_4:41246660-41246679 None:intergenic 30.0%
GAACTATAGTCTCATACATA+GGG - chr3_4:41246796-41246815 None:intergenic 30.0%
TGAACTATAGTCTCATACAT+AGG - chr3_4:41246797-41246816 None:intergenic 30.0%
TTTCTTCCATGGAAAATGTT+AGG + chr3_4:41246837-41246856 Msa0500700:intron 30.0%
! TTTTCTCCTAACATTTTCCA+TGG - chr3_4:41246846-41246865 None:intergenic 30.0%
ATGGAAAATGTTAGGAGAAA+AGG + chr3_4:41246845-41246864 Msa0500700:intron 30.0%
TGGAAAATGTTAGGAGAAAA+GGG + chr3_4:41246846-41246865 Msa0500700:intron 30.0%
CAGGGAAATATTTATGTTTG+TGG + chr3_4:41246892-41246911 Msa0500700:intron 30.0%
CGAAGATGTACTGAAAAAAA+TGG + chr3_4:41247107-41247126 Msa0500700:CDS 30.0%
AGATGTACTGAAAAAAATGG+AGG + chr3_4:41247110-41247129 Msa0500700:CDS 30.0%
AAAAATCAAATCATCCCATC+CGG - chr3_4:41247243-41247262 None:intergenic 30.0%
AAATTAAGGCTTAATTCCGT+GGG + chr3_4:41247300-41247319 Msa0500700:exon 30.0%
!! ACTGCTTTAAGGATTTACAA+TGG + chr3_4:41247489-41247508 Msa0500700:three_prime_UTR 30.0%
TTACAATGGATATATGTGAG+AGG + chr3_4:41247503-41247522 Msa0500700:three_prime_UTR 30.0%
TACAATGGATATATGTGAGA+GGG + chr3_4:41247504-41247523 Msa0500700:three_prime_UTR 30.0%
TCGGATTCTGTCTTAATTGT+GGG - chr3_4:41243936-41243955 None:intergenic 35.0%
TCGTGGATAAACTATAAGCT+CGG - chr3_4:41243955-41243974 None:intergenic 35.0%
GTTTATCCACGATCTAGTAA+AGG + chr3_4:41243963-41243982 Msa0500700:five_prime_UTR 35.0%
TCTAATCCTTTACTAGATCG+TGG - chr3_4:41243972-41243991 None:intergenic 35.0%
GAAACAAAAATGGAGTCACA+AGG + chr3_4:41244010-41244029 Msa0500700:exon 35.0%
TTCATTGTTGGAACTACTGA+CGG - chr3_4:41244227-41244246 None:intergenic 35.0%
CATCAGAACGAATTCATTGT+TGG - chr3_4:41244239-41244258 None:intergenic 35.0%
TCACGGAAAAATGAATTTCG+AGG + chr3_4:41244426-41244445 Msa0500700:CDS 35.0%
TGTTCCAATAACTCTTGAAC+AGG + chr3_4:41244461-41244480 Msa0500700:CDS 35.0%
ACTACCTGTTCAAGAGTTAT+TGG - chr3_4:41244468-41244487 None:intergenic 35.0%
TAATTATCTCCTGCTAATGC+TGG + chr3_4:41244503-41244522 Msa0500700:intron 35.0%
ATCGAGTACGAAATACAGAT+TGG - chr3_4:41244562-41244581 None:intergenic 35.0%
GCTTATCTGAGCTTATTTAG+TGG + chr3_4:41244601-41244620 Msa0500700:intron 35.0%
! AAGTAAAGGTGTGACATTCA+TGG - chr3_4:41244960-41244979 None:intergenic 35.0%
!!! ACTTTTAATAACGGGTAAGG+GGG + chr3_4:41244976-41244995 Msa0500700:intron 35.0%
! AACTTTTCTGCCTGTGTTAT+AGG + chr3_4:41245060-41245079 Msa0500700:intron 35.0%
! GTATACTTGTTGAAGGTTGA+AGG + chr3_4:41245082-41245101 Msa0500700:CDS 35.0%
TACCAGATCCACTTCAAATA+AGG + chr3_4:41245122-41245141 Msa0500700:CDS 35.0%
! TTCCTTATTTGAAGTGGATC+TGG - chr3_4:41245127-41245146 None:intergenic 35.0%
! AGTGCATTCCTTATTTGAAG+TGG - chr3_4:41245133-41245152 None:intergenic 35.0%
ACTTCAAATAAGGAATGCAC+TGG + chr3_4:41245132-41245151 Msa0500700:CDS 35.0%
CGTAATATGCATGATAGTTG+CGG + chr3_4:41245304-41245323 Msa0500700:intron 35.0%
!! AATTAGTTCTGTGACTGAAC+AGG + chr3_4:41245333-41245352 Msa0500700:intron 35.0%
! CAATTAGTCCTCTAAAGAAC+TGG - chr3_4:41245498-41245517 None:intergenic 35.0%
! CAGTTCTTTAGAGGACTAAT+TGG + chr3_4:41245496-41245515 Msa0500700:intron 35.0%
! GTTCTTTAGAGGACTAATTG+GGG + chr3_4:41245498-41245517 Msa0500700:intron 35.0%
ATTGGCTGCAGTTAATTACT+TGG - chr3_4:41245641-41245660 None:intergenic 35.0%
!!! TATTTTAGTATCTGCCCATC+TGG + chr3_4:41245718-41245737 Msa0500700:intron 35.0%
TTGCCCTGTATATTTCTCTA+AGG + chr3_4:41245865-41245884 Msa0500700:CDS 35.0%
TTGCAGTTAAAGAGACCAAT+GGG - chr3_4:41245900-41245919 None:intergenic 35.0%
ATTGAATACGTGAAACGACA+TGG + chr3_4:41246082-41246101 Msa0500700:intron 35.0%
!! CATCCATACTTGCTATATTC+CGG - chr3_4:41246211-41246230 None:intergenic 35.0%
GTAATACAAAAAACACTCGG+TGG + chr3_4:41246242-41246261 Msa0500700:intron 35.0%
TTGAACATGTGAAGCTAAGA+CGG - chr3_4:41246268-41246287 None:intergenic 35.0%
TTTAGGGACAACTTGACTAA+TGG + chr3_4:41246333-41246352 Msa0500700:intron 35.0%
TTAGGGACAACTTGACTAAT+GGG + chr3_4:41246334-41246353 Msa0500700:intron 35.0%
ATTATTTGCTTGGAAACTCC+AGG - chr3_4:41246558-41246577 None:intergenic 35.0%
TGGAGTTTCCAAGCAAATAA+TGG + chr3_4:41246557-41246576 Msa0500700:CDS 35.0%
! CTTTTGTGATCTTTCTTCCA+TGG + chr3_4:41246826-41246845 Msa0500700:intron 35.0%
TTTGAAAACTCTGACAAACC+AGG - chr3_4:41246976-41246995 None:intergenic 35.0%
CAGATGAGTGAAAAGAATTC+CGG + chr3_4:41247221-41247240 Msa0500700:intron 35.0%
!! GATTTGATTTTTATTCCCCC+TGG + chr3_4:41247251-41247270 Msa0500700:CDS 35.0%
GAAATTAAGGCTTAATTCCG+TGG + chr3_4:41247299-41247318 Msa0500700:exon 35.0%
AAGAAACTATTGTAAGGGAG+AGG - chr3_4:41247426-41247445 None:intergenic 35.0%
AAAGCAGTATCTGCATGAAA+AGG - chr3_4:41247477-41247496 None:intergenic 35.0%
TTCATGCAGATACTGCTTTA+AGG + chr3_4:41247478-41247497 Msa0500700:intron 35.0%
!! ATATATGTGAGAGGGCATTA+CGG + chr3_4:41247512-41247531 Msa0500700:three_prime_UTR 35.0%
!! TTCTACTTTTGCACGAGTTA+AGG + chr3_4:41247672-41247691 Msa0500700:three_prime_UTR 35.0%
!! TCTACTTTTGCACGAGTTAA+GGG + chr3_4:41247673-41247692 Msa0500700:three_prime_UTR 35.0%
TTGCAGGTGTTTGAACTATT+TGG + chr3_4:41247738-41247757 Msa0500700:three_prime_UTR 35.0%
CTCGGATTCTGTCTTAATTG+TGG - chr3_4:41243937-41243956 None:intergenic 40.0%
! ATCCGCTTCTATCATTTTCG+CGG + chr3_4:41244041-41244060 Msa0500700:CDS 40.0%
AACCGCGAAAATGATAGAAG+CGG - chr3_4:41244046-41244065 None:intergenic 40.0%
TGTCTTCAAAACGAGTTGCA+AGG - chr3_4:41244090-41244109 None:intergenic 40.0%
GAAGACACAAAAAAACTCGC+CGG + chr3_4:41244103-41244122 Msa0500700:CDS 40.0%
GTGAGATTGAATTAGGGTTC+CGG - chr3_4:41244125-41244144 None:intergenic 40.0%
GCGAGTGTGAGATTGAATTA+GGG - chr3_4:41244131-41244150 None:intergenic 40.0%
TGCGAGTGTGAGATTGAATT+AGG - chr3_4:41244132-41244151 None:intergenic 40.0%
GACGTTGTTGGAAGTTAAAG+CGG - chr3_4:41244173-41244192 None:intergenic 40.0%
!!! CGTTGTTTTAGGTTCGATCA+CGG + chr3_4:41244409-41244428 Msa0500700:intron 40.0%
TGAATTTCGAGGCAATGCTA+AGG + chr3_4:41244437-41244456 Msa0500700:CDS 40.0%
GTGATAAAACCAGCATTAGC+AGG - chr3_4:41244515-41244534 None:intergenic 40.0%
TGCTATATGTCAGTAGCACA+TGG - chr3_4:41244930-41244949 None:intergenic 40.0%
GAAGTGGATCTGGTAAGAAT+CGG - chr3_4:41245117-41245136 None:intergenic 40.0%
TCAAATAAGGAATGCACTGG+AGG + chr3_4:41245135-41245154 Msa0500700:CDS 40.0%
TTCCATAGTGACACTGCTAT+AGG - chr3_4:41245232-41245251 None:intergenic 40.0%
!! TGATGGAGTTCCTGTTTTTC+AGG + chr3_4:41245448-41245467 Msa0500700:CDS 40.0%
GACTAATTGGGGAATGTTGA+GGG + chr3_4:41245509-41245528 Msa0500700:intron 40.0%
AATTAACTGCAGCCAATGCA+TGG + chr3_4:41245644-41245663 Msa0500700:intron 40.0%
TTTAAGCTGTTTGCCAGTCT+TGG - chr3_4:41245687-41245706 None:intergenic 40.0%
CTAAGGTTTGTCTAACCCAT+TGG + chr3_4:41245882-41245901 Msa0500700:intron 40.0%
GTTGCAGTTAAAGAGACCAA+TGG - chr3_4:41245901-41245920 None:intergenic 40.0%
ATTGGATGACAACTTGACAG+AGG - chr3_4:41246020-41246039 None:intergenic 40.0%
! CTATGATGATGATGATGTGG+CGG + chr3_4:41246046-41246065 Msa0500700:intron 40.0%
!! ATGGCTATAGAGTGCTGATA+TGG + chr3_4:41246101-41246120 Msa0500700:intron 40.0%
CTACCGGAATATAGCAAGTA+TGG + chr3_4:41246205-41246224 Msa0500700:intron 40.0%
! TTACTGCCAATCTGCACTTT+TGG - chr3_4:41246386-41246405 None:intergenic 40.0%
TAGTTAGGCATGTAGCTTGA+TGG + chr3_4:41246440-41246459 Msa0500700:intron 40.0%
! CGTTTGTTGGTTAAATGGAC+AGG + chr3_4:41246485-41246504 Msa0500700:intron 40.0%
TGGACAGGAAGATATTGAAC+AGG + chr3_4:41246500-41246519 Msa0500700:intron 40.0%
! AGGAACTATCTAAGGTTTCC+AGG + chr3_4:41246520-41246539 Msa0500700:CDS 40.0%
! GGAACTATCTAAGGTTTCCA+GGG + chr3_4:41246521-41246540 Msa0500700:CDS 40.0%
! TTGTTAGTCTGCTTGATACC+TGG + chr3_4:41246955-41246974 Msa0500700:intron 40.0%
! CTTTTCACTCATCTGCAATG+TGG - chr3_4:41247216-41247235 None:intergenic 40.0%
TGAGTGAAAAGAATTCCGGA+TGG + chr3_4:41247225-41247244 Msa0500700:CDS 40.0%
GAGTGAAAAGAATTCCGGAT+GGG + chr3_4:41247226-41247245 Msa0500700:CDS 40.0%
! TTAGCTTAAGTTTGCTCCCA+CGG - chr3_4:41247319-41247338 None:intergenic 40.0%
!! TATATGTGAGAGGGCATTAC+GGG + chr3_4:41247513-41247532 Msa0500700:three_prime_UTR 40.0%
ATTTCAGTTTAAGGGTCCCA+TGG + chr3_4:41247544-41247563 Msa0500700:three_prime_UTR 40.0%
CTCAAAAATCGCAGTTCCAT+GGG - chr3_4:41247563-41247582 None:intergenic 40.0%
ACTCAAAAATCGCAGTTCCA+TGG - chr3_4:41247564-41247583 None:intergenic 40.0%
TTAAGGGAGGTCTATGGATA+TGG + chr3_4:41247689-41247708 Msa0500700:three_prime_UTR 40.0%
GAGGTCTATGGATATGGATT+TGG + chr3_4:41247695-41247714 Msa0500700:three_prime_UTR 40.0%
CAGGTGTTTGAACTATTTGG+AGG + chr3_4:41247741-41247760 Msa0500700:three_prime_UTR 40.0%
AAATGGAGTCACAAGGACAG+TGG + chr3_4:41244017-41244036 Msa0500700:exon 45.0%
! CAAGGTGGTTACAGTGTTGA+TGG - chr3_4:41244072-41244091 None:intergenic 45.0%
CTTCAAAACGAGTTGCAAGG+TGG - chr3_4:41244087-41244106 None:intergenic 45.0%
GTTGTTGGAAGTTAAAGCGG+CGG - chr3_4:41244170-41244189 None:intergenic 45.0%
GGAACTACTGACGGTGTAAA+CGG - chr3_4:41244218-41244237 None:intergenic 45.0%
GCGAAAGCAAAGCAATCCAA+TGG - chr3_4:41244284-41244303 None:intergenic 45.0%
GGTGTGACATTCATGGTTGT+AGG - chr3_4:41244953-41244972 None:intergenic 45.0%
! AATGCACTGGAGGTTAGTTC+CGG + chr3_4:41245145-41245164 Msa0500700:intron 45.0%
! GTCCTATAGCAGTGTCACTA+TGG + chr3_4:41245227-41245246 Msa0500700:intron 45.0%
ATCAAAACCTTCCTTGCTGG+CGG - chr3_4:41245432-41245451 None:intergenic 45.0%
TCCATCAAAACCTTCCTTGC+TGG - chr3_4:41245435-41245454 None:intergenic 45.0%
GGACTAATTGGGGAATGTTG+AGG + chr3_4:41245508-41245527 Msa0500700:intron 45.0%
GGTCTCTTTAACTGCAACTC+TGG + chr3_4:41245903-41245922 Msa0500700:intron 45.0%
CAACTCTGGTCCCTCTATTA+TGG + chr3_4:41245917-41245936 Msa0500700:intron 45.0%
!! ACACCAACTTAATGGGCTAC+CGG + chr3_4:41246189-41246208 Msa0500700:intron 45.0%
ATTCCGGTAGCCCATTAAGT+TGG - chr3_4:41246195-41246214 None:intergenic 45.0%
! GGATGACCAAAAGTGCAGAT+TGG + chr3_4:41246377-41246396 Msa0500700:intron 45.0%
TGCAGATTGGCAGTAAGAGA+GGG + chr3_4:41246390-41246409 Msa0500700:intron 45.0%
! TCCAGGGTATCTAAAAGTCC+TGG + chr3_4:41246537-41246556 Msa0500700:CDS 45.0%
! TCCAGGACTTTTAGATACCC+TGG - chr3_4:41246541-41246560 None:intergenic 45.0%
!! TTGAGAACGGCTTTTTCCAG+GGG - chr3_4:41247270-41247289 None:intergenic 45.0%
!! GTTGAGAACGGCTTTTTCCA+GGG - chr3_4:41247271-41247290 None:intergenic 45.0%
!! TGTTGAGAACGGCTTTTTCC+AGG - chr3_4:41247272-41247291 None:intergenic 45.0%
! GTTGACTCATTCTTGTCAGC+TGG + chr3_4:41247387-41247406 Msa0500700:three_prime_UTR 45.0%
! ACTTTTGCACGAGTTAAGGG+AGG + chr3_4:41247676-41247695 Msa0500700:three_prime_UTR 45.0%
ACTACTGACGGTGTAAACGG+AGG - chr3_4:41244215-41244234 None:intergenic 50.0%
GTTCTGATGTCCGATGCTGA+AGG + chr3_4:41244250-41244269 Msa0500700:CDS 50.0%
GGACTTAGCACCTTCAGCAT+CGG - chr3_4:41244263-41244282 None:intergenic 50.0%
!! GCTGAAGGTGCTAAGTCCAT+TGG + chr3_4:41244265-41244284 Msa0500700:CDS 50.0%
GGAAAGCTTCAGCGTCTTCT+TGG - chr3_4:41244306-41244325 None:intergenic 50.0%
AGAGGAACGTTACCTGAGCA+AGG - chr3_4:41244327-41244346 None:intergenic 50.0%
TATGCATGATAGTTGCGGCG+TGG + chr3_4:41245309-41245328 Msa0500700:intron 50.0%
ATGCATGATAGTTGCGGCGT+GGG + chr3_4:41245310-41245329 Msa0500700:intron 50.0%
!! GCCAGCAAGGAAGGTTTTGA+TGG + chr3_4:41245431-41245450 Msa0500700:CDS 50.0%
GGCAGTCTCCAGTTCTTTAG+AGG + chr3_4:41245487-41245506 Msa0500700:intron 50.0%
ATTGGGGAATGTTGAGGGTG+TGG + chr3_4:41245514-41245533 Msa0500700:intron 50.0%
! TTGGGGAATGTTGAGGGTGT+GGG + chr3_4:41245515-41245534 Msa0500700:intron 50.0%
GTGCAGATTGGCAGTAAGAG+AGG + chr3_4:41246389-41246408 Msa0500700:intron 50.0%
!! TGAGAACGGCTTTTTCCAGG+GGG - chr3_4:41247269-41247288 None:intergenic 50.0%
TTGTCAGCTGGTGAGATGTC+AGG + chr3_4:41247399-41247418 Msa0500700:intron 50.0%
CACGAGTTAAGGGAGGTCTA+TGG + chr3_4:41247683-41247702 Msa0500700:three_prime_UTR 50.0%
AGTTAAAGCGGCGGCGAAAG+CGG - chr3_4:41244161-41244180 None:intergenic 55.0%
GAGGGATTTGGCGACGTTGT+TGG - chr3_4:41244185-41244204 None:intergenic 55.0%
GACGGTGTAAACGGAGGTTC+CGG - chr3_4:41244209-41244228 None:intergenic 55.0%
CGCTGAAGCTTTCCTTGCTC+AGG + chr3_4:41244312-41244331 Msa0500700:CDS 55.0%
TTAAAGCGGCGGCGAAAGCG+GGG - chr3_4:41244159-41244178 None:intergenic 60.0%
GTTAAAGCGGCGGCGAAAGC+GGG - chr3_4:41244160-41244179 None:intergenic 60.0%
AACGTCGCCAAATCCCTCGC+CGG + chr3_4:41244187-41244206 Msa0500700:CDS 60.0%
GTAAACGGAGGTTCCGGCGA+GGG - chr3_4:41244203-41244222 None:intergenic 60.0%
TGTAAACGGAGGTTCCGGCG+AGG - chr3_4:41244204-41244223 None:intergenic 60.0%
! GGAATGTTGAGGGTGTGGGC+AGG + chr3_4:41245519-41245538 Msa0500700:intron 60.0%
GGAGGTTCCGGCGAGGGATT+TGG - chr3_4:41244197-41244216 None:intergenic 65.0%
TCAGCTCAGAGCCGCCAGCA+AGG + chr3_4:41245418-41245437 Msa0500700:intron 65.0%
CTCAGAGCCGCCAGCAAGGA+AGG + chr3_4:41245422-41245441 Msa0500700:CDS 65.0%
AGCGGCGGCGAAAGCGGGGT+TGG - chr3_4:41244155-41244174 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41243916 41247801 41243916 ID=Msa0500700;Name=Msa0500700
chr3_4 mRNA 41243916 41247801 41243916 ID=Msa0500700-mRNA-1;Parent=Msa0500700;Name=Msa0500700-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|0.87|0.77|9|410|252
chr3_4 exon 41243916 41244333 41243916 ID=Msa0500700-mRNA-1:exon:8533;Parent=Msa0500700-mRNA-1
chr3_4 exon 41244420 41244482 41244420 ID=Msa0500700-mRNA-1:exon:8534;Parent=Msa0500700-mRNA-1
chr3_4 exon 41245082 41245156 41245082 ID=Msa0500700-mRNA-1:exon:8535;Parent=Msa0500700-mRNA-1
chr3_4 exon 41245422 41245469 41245422 ID=Msa0500700-mRNA-1:exon:8536;Parent=Msa0500700-mRNA-1
chr3_4 exon 41245827 41245886 41245827 ID=Msa0500700-mRNA-1:exon:8537;Parent=Msa0500700-mRNA-1
chr3_4 exon 41246507 41246578 41246507 ID=Msa0500700-mRNA-1:exon:8538;Parent=Msa0500700-mRNA-1
chr3_4 exon 41247096 41247131 41247096 ID=Msa0500700-mRNA-1:exon:8539;Parent=Msa0500700-mRNA-1
chr3_4 exon 41247224 41247408 41247224 ID=Msa0500700-mRNA-1:exon:8540;Parent=Msa0500700-mRNA-1
chr3_4 exon 41247487 41247801 41247487 ID=Msa0500700-mRNA-1:exon:8541;Parent=Msa0500700-mRNA-1
chr3_4 five_prime_UTR 41243916 41244018 41243916 ID=Msa0500700-mRNA-1:five_prime_utr;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41244019 41244333 41244019 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41244420 41244482 41244420 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41245082 41245156 41245082 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41245422 41245469 41245422 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41245827 41245886 41245827 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41246507 41246578 41246507 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41247096 41247131 41247096 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 CDS 41247224 41247313 41247224 ID=Msa0500700-mRNA-1:cds;Parent=Msa0500700-mRNA-1
chr3_4 three_prime_UTR 41247314 41247408 41247314 ID=Msa0500700-mRNA-1:three_prime_utr;Parent=Msa0500700-mRNA-1
chr3_4 three_prime_UTR 41247487 41247801 41247487 ID=Msa0500700-mRNA-1:three_prime_utr;Parent=Msa0500700-mRNA-1
Gene Sequence

>Msa0500700

ATGGAGTCACAAGGACAGTGGAATCCGCTTCTATCATTTTCGCGGTTCATCCATCAACACTGTAACCACCTTGCAACTCGTTTTGAAGACACAAAAAAACTCGCCGGAACCCTAATTCAATCTCACACTCGCACCAACCCCGCTTTCGCCGCCGCTTTAACTTCCAACAACGTCGCCAAATCCCTCGCCGGAACCTCCGTTTACACCGTCAGTAGTTCCAACAATGAATTCGTTCTGATGTCCGATGCTGAAGGTGCTAAGTCCATTGGATTGCTTTGCTTTCGCCAAGAAGACGCTGAAGCTTTCCTTGCTCAGGTTCGATCACGGAAAAATGAATTTCGAGGCAATGCTAAGGTTGTTCCAATAACTCTTGAACAGGTATACTTGTTGAAGGTTGAAGGTATTGCATTCCGATTCTTACCAGATCCACTTCAAATAAGGAATGCACTGGAGCTCAGAGCCGCCAGCAAGGAAGGTTTTGATGGAGTTCCTGTTTTTCAGTCAGAATTTTTGGTTGTGAAGAAGAAGAATAAACGTTATTGCCCTGTATATTTCTCTAAGGAAGATATTGAACAGGAACTATCTAAGGTTTCCAGGGTATCTAAAAGTCCTGGAGTTTCCAAGCAAATAATGGTTGGTAGCTTCGAAGATGTACTGAAAAAAATGGAGATGAGTGAAAAGAATTCCGGATGGGATGATTTGATTTTTATTCCCCCTGGAAAAAGCCGTTCTCAACATATACAAGAAATTAAGGCTTAA

Protein sequence

>Msa0500700

MESQGQWNPLLSFSRFIHQHCNHLATRFEDTKKLAGTLIQSHTRTNPAFAAALTSNNVAKSLAGTSVYTVSSSNNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVRSRKNEFRGNAKVVPITLEQVYLLKVEGIAFRFLPDPLQIRNALELRAASKEGFDGVPVFQSEFLVVKKKNKRYCPVYFSKEDIEQELSKVSRVSKSPGVSKQIMVGSFEDVLKKMEMSEKNSGWDDLIFIPPGKSRSQHIQEIKA*