Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539620 | XP_039689920.1 | 97.245 | 363 | 4 | 1 | 1 | 363 | 1 | 357 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539620 | sp|O24305|M3OM1_PEA | 77.961 | 363 | 77 | 2 | 1 | 363 | 1 | 360 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539620 | A0A072UJL0 | 96.970 | 363 | 5 | 1 | 1 | 363 | 1 | 357 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0152990 | Msa0539620 | 0.800058 | 1.721943e-48 | -8.615850e-47 |
| Msa0209060 | Msa0539620 | 0.802453 | 5.569714e-49 | -8.615850e-47 |
| Msa0374030 | Msa0539620 | 0.805953 | 1.040447e-49 | -8.615850e-47 |
| Msa0288540 | Msa0539620 | 0.808414 | 3.133694e-50 | -8.615850e-47 |
| Msa0299030 | Msa0539620 | 0.804286 | 2.323331e-49 | -8.615850e-47 |
| Msa0326770 | Msa0539620 | 0.811949 | 5.420428e-51 | -8.615850e-47 |
| Msa0539620 | Msa0539630 | 0.805022 | 1.631601e-49 | -8.615850e-47 |
| Msa0539620 | Msa0580100 | 0.818993 | 1.466787e-52 | -8.615850e-47 |
| Msa0539620 | Msa0595390 | 0.911057 | 9.354163e-83 | -8.615850e-47 |
| Msa0539620 | Msa0946010 | 0.834617 | 2.703002e-56 | -8.615850e-47 |
| Msa0539620 | Msa1205910 | 0.803910 | 2.781468e-49 | -8.615850e-47 |
| Msa0539620 | Msa1406840 | 0.809729 | 1.638256e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539620 | MtrunA17_Chr4g0014591 | 96.970 | 363 | 5 | 1 | 1 | 363 | 1 | 357 | 0.0 | 716 |
| Msa0539620 | MtrunA17_Chr4g0014661 | 96.419 | 363 | 7 | 1 | 1 | 363 | 1 | 357 | 0.0 | 712 |
| Msa0539620 | MtrunA17_Chr4g0046361 | 77.135 | 363 | 81 | 1 | 1 | 363 | 1 | 361 | 0.0 | 581 |
| Msa0539620 | MtrunA17_Chr4g0014681 | 78.571 | 364 | 76 | 2 | 1 | 363 | 1 | 363 | 0.0 | 573 |
| Msa0539620 | MtrunA17_Chr4g0014561 | 78.022 | 364 | 78 | 2 | 1 | 363 | 1 | 363 | 0.0 | 569 |
| Msa0539620 | MtrunA17_Chr4g0014641 | 76.923 | 364 | 82 | 2 | 1 | 363 | 1 | 363 | 0.0 | 561 |
| Msa0539620 | MtrunA17_Chr4g0046341 | 77.473 | 364 | 81 | 1 | 1 | 363 | 1 | 364 | 0.0 | 550 |
| Msa0539620 | MtrunA17_Chr4g0014601 | 95.865 | 266 | 5 | 1 | 1 | 266 | 1 | 260 | 0.0 | 515 |
| Msa0539620 | MtrunA17_Chr1g0188391 | 50.000 | 366 | 175 | 6 | 1 | 363 | 1 | 361 | 9.47e-122 | 355 |
| Msa0539620 | MtrunA17_Chr7g0219141 | 48.045 | 358 | 180 | 4 | 6 | 363 | 6 | 357 | 2.12e-121 | 354 |
| Msa0539620 | MtrunA17_Chr7g0219161 | 48.844 | 346 | 171 | 4 | 6 | 351 | 6 | 345 | 1.18e-118 | 347 |
| Msa0539620 | MtrunA17_Chr7g0223231 | 48.034 | 356 | 173 | 5 | 6 | 361 | 5 | 348 | 4.96e-117 | 343 |
| Msa0539620 | MtrunA17_Chr5g0432251 | 47.606 | 355 | 178 | 5 | 11 | 363 | 11 | 359 | 2.43e-115 | 339 |
| Msa0539620 | MtrunA17_Chr5g0432301 | 46.027 | 365 | 186 | 6 | 3 | 362 | 1 | 359 | 9.64e-114 | 335 |
| Msa0539620 | MtrunA17_Chr4g0046531 | 49.311 | 363 | 175 | 4 | 1 | 362 | 1 | 355 | 7.51e-111 | 339 |
| Msa0539620 | MtrunA17_Chr4g0046531 | 48.352 | 364 | 179 | 4 | 1 | 363 | 363 | 718 | 1.20e-108 | 333 |
| Msa0539620 | MtrunA17_Chr7g0223241 | 47.472 | 356 | 175 | 5 | 6 | 361 | 5 | 348 | 1.46e-110 | 327 |
| Msa0539620 | MtrunA17_Chr5g0432241 | 45.856 | 362 | 188 | 5 | 4 | 363 | 5 | 360 | 3.48e-110 | 326 |
| Msa0539620 | MtrunA17_Chr5g0432261 | 45.326 | 353 | 161 | 3 | 11 | 363 | 7 | 327 | 1.37e-105 | 313 |
| Msa0539620 | MtrunA17_Chr5g0432211 | 44.225 | 355 | 176 | 6 | 11 | 363 | 11 | 345 | 3.59e-104 | 310 |
| Msa0539620 | MtrunA17_Chr4g0040621 | 44.350 | 354 | 188 | 3 | 11 | 363 | 24 | 369 | 4.52e-102 | 305 |
| Msa0539620 | MtrunA17_Chr1g0188371 | 46.746 | 338 | 171 | 5 | 9 | 343 | 9 | 340 | 2.05e-98 | 296 |
| Msa0539620 | MtrunA17_Chr4g0022021 | 33.425 | 365 | 229 | 8 | 3 | 363 | 14 | 368 | 1.28e-56 | 189 |
| Msa0539620 | MtrunA17_Chr3g0121301 | 36.628 | 344 | 201 | 11 | 20 | 359 | 27 | 357 | 6.14e-56 | 187 |
| Msa0539620 | MtrunA17_Chr4g0021981 | 33.151 | 365 | 230 | 8 | 3 | 363 | 14 | 368 | 2.04e-55 | 186 |
| Msa0539620 | MtrunA17_Chr7g0219171 | 58.209 | 134 | 55 | 1 | 230 | 363 | 116 | 248 | 4.96e-50 | 168 |
| Msa0539620 | MtrunA17_Chr7g0219171 | 42.373 | 118 | 61 | 1 | 6 | 123 | 6 | 116 | 4.73e-26 | 104 |
| Msa0539620 | MtrunA17_Chr4g0014611 | 96.000 | 100 | 4 | 0 | 264 | 363 | 8 | 107 | 2.74e-45 | 150 |
| Msa0539620 | MtrunA17_Chr5g0448091 | 32.448 | 339 | 210 | 12 | 29 | 359 | 31 | 358 | 3.82e-44 | 155 |
| Msa0539620 | MtrunA17_Chr4g0014671 | 96.190 | 105 | 4 | 0 | 259 | 363 | 30 | 134 | 7.51e-42 | 143 |
| Msa0539620 | MtrunA17_Chr3g0128011 | 32.676 | 355 | 203 | 12 | 9 | 349 | 71 | 403 | 3.71e-41 | 149 |
| Msa0539620 | MtrunA17_Chr1g0200491 | 30.398 | 352 | 227 | 8 | 5 | 349 | 17 | 357 | 1.45e-40 | 146 |
| Msa0539620 | MtrunA17_Chr1g0163601 | 30.240 | 334 | 219 | 7 | 24 | 350 | 29 | 355 | 7.90e-39 | 142 |
| Msa0539620 | MtrunA17_Chr7g0276401 | 30.473 | 338 | 219 | 10 | 26 | 358 | 42 | 368 | 1.15e-38 | 141 |
| Msa0539620 | MtrunA17_Chr7g0218131 | 29.290 | 338 | 224 | 9 | 32 | 362 | 40 | 369 | 2.50e-38 | 140 |
| Msa0539620 | MtrunA17_Chr8g0367501 | 29.752 | 363 | 241 | 9 | 5 | 361 | 6 | 360 | 4.55e-38 | 141 |
| Msa0539620 | MtrunA17_Chr8g0367441 | 30.769 | 325 | 212 | 8 | 26 | 344 | 41 | 358 | 5.16e-38 | 140 |
| Msa0539620 | MtrunA17_Chr7g0276411 | 30.699 | 329 | 215 | 8 | 26 | 348 | 26 | 347 | 5.24e-38 | 139 |
| Msa0539620 | MtrunA17_Chr1g0163611 | 29.023 | 348 | 231 | 8 | 24 | 362 | 29 | 369 | 5.31e-38 | 139 |
| Msa0539620 | MtrunA17_Chr8g0367491 | 29.377 | 337 | 224 | 9 | 26 | 355 | 40 | 369 | 7.57e-37 | 137 |
| Msa0539620 | MtrunA17_Chr7g0218301 | 28.739 | 341 | 222 | 8 | 32 | 361 | 40 | 370 | 9.71e-37 | 136 |
| Msa0539620 | MtrunA17_Chr7g0218261 | 28.443 | 334 | 226 | 8 | 32 | 361 | 39 | 363 | 3.91e-36 | 134 |
| Msa0539620 | MtrunA17_Chr8g0367451 | 30.462 | 325 | 213 | 8 | 26 | 344 | 40 | 357 | 4.98e-36 | 134 |
| Msa0539620 | MtrunA17_Chr7g0218271 | 28.529 | 340 | 224 | 8 | 32 | 361 | 40 | 370 | 5.42e-36 | 134 |
| Msa0539620 | MtrunA17_Chr2g0314271 | 33.232 | 328 | 194 | 11 | 31 | 348 | 27 | 339 | 1.15e-35 | 133 |
| Msa0539620 | MtrunA17_Chr1g0163621 | 29.464 | 336 | 217 | 9 | 25 | 350 | 44 | 369 | 2.74e-35 | 132 |
| Msa0539620 | MtrunA17_Chr7g0218181 | 26.706 | 337 | 231 | 9 | 32 | 362 | 40 | 366 | 4.26e-35 | 132 |
| Msa0539620 | MtrunA17_Chr2g0307521 | 29.204 | 339 | 217 | 10 | 32 | 361 | 34 | 358 | 8.28e-35 | 131 |
| Msa0539620 | MtrunA17_Chr7g0218211 | 29.254 | 335 | 223 | 8 | 32 | 361 | 39 | 364 | 5.51e-34 | 129 |
| Msa0539620 | MtrunA17_Chr8g0345851 | 31.765 | 255 | 165 | 5 | 98 | 350 | 30 | 277 | 1.76e-32 | 123 |
| Msa0539620 | MtrunA17_Chr3g0085211 | 29.969 | 327 | 217 | 8 | 28 | 350 | 38 | 356 | 1.79e-32 | 125 |
| Msa0539620 | MtrunA17_Chr8g0367381 | 29.677 | 310 | 188 | 8 | 26 | 330 | 41 | 325 | 1.30e-30 | 119 |
| Msa0539620 | MtrunA17_Chr3g0085201 | 29.851 | 335 | 214 | 12 | 32 | 358 | 29 | 350 | 4.66e-30 | 118 |
| Msa0539620 | MtrunA17_Chr4g0014621 | 96.970 | 66 | 2 | 0 | 298 | 363 | 197 | 262 | 6.26e-29 | 112 |
| Msa0539620 | MtrunA17_Chr3g0130011 | 27.299 | 348 | 231 | 12 | 23 | 362 | 24 | 357 | 1.87e-27 | 110 |
| Msa0539620 | MtrunA17_Chr3g0130061 | 26.426 | 333 | 225 | 11 | 23 | 348 | 24 | 343 | 1.98e-25 | 105 |
| Msa0539620 | MtrunA17_Chr8g0367461 | 37.963 | 108 | 62 | 3 | 250 | 355 | 1 | 105 | 5.58e-18 | 79.0 |
| Msa0539620 | MtrunA17_Chr6g0482291 | 29.560 | 159 | 100 | 3 | 191 | 348 | 14 | 161 | 3.54e-17 | 78.6 |
| Msa0539620 | MtrunA17_Chr8g0367401 | 33.945 | 109 | 70 | 1 | 155 | 263 | 4 | 110 | 8.05e-14 | 68.2 |
| Msa0539620 | MtrunA17_Chr4g0014551 | 88.636 | 44 | 5 | 0 | 320 | 363 | 1 | 44 | 3.08e-13 | 63.5 |
| Msa0539620 | MtrunA17_Chr4g0011691 | 37.255 | 102 | 54 | 3 | 6 | 107 | 16 | 107 | 8.12e-13 | 67.4 |
| Msa0539620 | MtrunA17_Chr4g0011691 | 39.583 | 96 | 54 | 3 | 265 | 359 | 140 | 232 | 2.12e-11 | 63.2 |
| Msa0539620 | MtrunA17_Chr1g0170941 | 43.939 | 66 | 37 | 0 | 196 | 261 | 11 | 76 | 8.01e-11 | 57.8 |
| Msa0539620 | MtrunA17_Chr8g0367391 | 32.203 | 118 | 73 | 4 | 234 | 348 | 6 | 119 | 8.11e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539620 | AT4G35150.1 | 32.123 | 358 | 183 | 10 | 16 | 362 | 15 | 323 | 1.40e-46 | 161 |
| Msa0539620 | AT4G35160.1 | 33.791 | 364 | 212 | 12 | 16 | 362 | 29 | 380 | 9.32e-45 | 158 |
| Msa0539620 | AT5G54160.1 | 31.921 | 354 | 221 | 9 | 8 | 350 | 4 | 348 | 1.13e-43 | 155 |
| Msa0539620 | AT1G77520.1 | 31.686 | 344 | 216 | 10 | 31 | 362 | 44 | 380 | 8.96e-39 | 142 |
| Msa0539620 | AT3G53140.1 | 31.304 | 345 | 207 | 11 | 31 | 360 | 27 | 356 | 5.03e-36 | 134 |
| Msa0539620 | AT1G33030.1 | 29.518 | 332 | 215 | 10 | 31 | 353 | 21 | 342 | 4.56e-35 | 132 |
| Msa0539620 | AT1G51990.2 | 31.471 | 340 | 215 | 11 | 33 | 363 | 32 | 362 | 1.01e-34 | 131 |
| Msa0539620 | AT5G53810.1 | 31.897 | 348 | 215 | 11 | 29 | 362 | 38 | 377 | 1.58e-34 | 131 |
| Msa0539620 | AT1G51990.1 | 31.471 | 340 | 215 | 11 | 33 | 363 | 32 | 362 | 9.86e-34 | 128 |
| Msa0539620 | AT1G63140.2 | 28.726 | 369 | 241 | 11 | 9 | 362 | 19 | 380 | 1.35e-31 | 123 |
| Msa0539620 | AT1G63140.4 | 29.167 | 360 | 231 | 12 | 9 | 353 | 39 | 389 | 1.68e-31 | 123 |
| Msa0539620 | AT1G77530.1 | 30.814 | 344 | 219 | 9 | 31 | 362 | 44 | 380 | 8.52e-30 | 118 |
| Msa0539620 | AT1G76790.1 | 27.371 | 369 | 222 | 14 | 7 | 355 | 9 | 351 | 7.32e-26 | 107 |
| Msa0539620 | AT1G62900.1 | 32.812 | 192 | 124 | 3 | 173 | 362 | 16 | 204 | 8.75e-24 | 97.8 |
| Msa0539620 | AT1G21100.1 | 26.488 | 336 | 216 | 11 | 31 | 350 | 40 | 360 | 3.13e-20 | 91.3 |
| Msa0539620 | AT1G21130.1 | 26.126 | 333 | 217 | 10 | 31 | 348 | 40 | 358 | 4.38e-20 | 90.9 |
| Msa0539620 | AT5G37170.2 | 28.866 | 194 | 132 | 4 | 172 | 362 | 43 | 233 | 8.10e-20 | 87.8 |
| Msa0539620 | AT1G21110.1 | 25.152 | 330 | 218 | 10 | 31 | 345 | 40 | 355 | 1.66e-19 | 89.4 |
| Msa0539620 | AT5G37170.1 | 28.866 | 194 | 132 | 4 | 172 | 362 | 143 | 333 | 2.43e-19 | 88.2 |
| Msa0539620 | AT1G21120.1 | 25.526 | 333 | 219 | 10 | 31 | 348 | 40 | 358 | 7.16e-19 | 87.4 |
| Msa0539620 | AT5G37170.3 | 31.214 | 173 | 110 | 5 | 194 | 360 | 14 | 183 | 8.65e-19 | 83.6 |
| Msa0539620 | AT1G21120.2 | 25.373 | 335 | 221 | 10 | 31 | 350 | 88 | 408 | 8.65e-19 | 87.4 |
| Msa0539620 | AT1G63140.1 | 27.239 | 268 | 178 | 8 | 9 | 263 | 39 | 302 | 2.41e-14 | 73.2 |
| Msa0539620 | AT1G33030.2 | 26.778 | 239 | 162 | 8 | 31 | 263 | 21 | 252 | 1.26e-13 | 70.5 |
| Msa0539620 | AT1G33030.3 | 26.778 | 239 | 162 | 8 | 31 | 263 | 21 | 252 | 2.80e-13 | 69.7 |
Find 72 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGTTCTTCAATATCTTTA+AGG | 0.222796 | 4_1:+20725551 | None:intergenic |
| AACAGTAAAGAAGCTATTTC+AGG | 0.249373 | 4_1:-20725534 | Msa0539620:CDS |
| TTCAAAGATGAGGCTAATTC+AGG | 0.265492 | 4_1:+20727173 | None:intergenic |
| TATAGGACACTAACTTTAGA+AGG | 0.276793 | 4_1:+20727143 | None:intergenic |
| TTGAAACAAACTAAGTTTAT+CGG | 0.284493 | 4_1:+20726833 | None:intergenic |
| CAGCCATGTGTTTGAGGGTT+TGG | 0.297695 | 4_1:-20726760 | Msa0539620:CDS |
| GTTTGAGGGTTTGGAATCTT+TGG | 0.299287 | 4_1:-20726751 | Msa0539620:CDS |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4_1:+20726929 | None:intergenic |
| CTAAAGTTAGTGTCCTATAT+AGG | 0.347448 | 4_1:-20727139 | Msa0539620:CDS |
| CTTAACAAGTGGTGCAAAAC+AGG | 0.354102 | 4_1:+20726989 | None:intergenic |
| CAGGTTGTTGCTAACTTATC+TGG | 0.370478 | 4_1:-20726642 | Msa0539620:CDS |
| CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 4_1:+20727020 | None:intergenic |
| AAGAAAGAGAAAAGAAAGAA+TGG | 0.396191 | 4_1:-20725389 | Msa0539620:CDS |
| GAGAGACTTGAAGCCGCATA+TGG | 0.397843 | 4_1:+20725320 | None:intergenic |
| AATTCTTCATCCATGTTCTC+TGG | 0.398747 | 4_1:-20726964 | Msa0539620:CDS |
| TCATAGGCTTTCCATGTTTG+TGG | 0.399025 | 4_1:+20727201 | None:intergenic |
| AGTTTAATCTATAAAACAAA+TGG | 0.421106 | 4_1:-20727354 | Msa0539620:exon |
| GATAAACTTAGTTTGTTTCA+AGG | 0.435308 | 4_1:-20726831 | Msa0539620:CDS |
| GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4_1:-20725414 | Msa0539620:CDS |
| GCAACAACTAATTAAAATCA+AGG | 0.441531 | 4_1:+20725285 | None:intergenic |
| GCTAATTCAGGAACAGTCAT+AGG | 0.442962 | 4_1:+20727185 | None:intergenic |
| GCACTTTATGAAAGTGCAAT+GGG | 0.443790 | 4_1:-20726894 | Msa0539620:CDS |
| GTTGATGTAGCAGGTGGAAC+TGG | 0.443796 | 4_1:-20726729 | Msa0539620:CDS |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4_1:-20726938 | Msa0539620:CDS |
| ACAGCTGTGAAAGGCAAAGA+TGG | 0.453024 | 4_1:-20727077 | Msa0539620:CDS |
| ACTCAAAATTTGAACTTTGT+TGG | 0.456655 | 4_1:-20726618 | Msa0539620:CDS |
| GACTGCAGCCATGTGTTTGA+GGG | 0.460568 | 4_1:-20726765 | Msa0539620:CDS |
| CAAAATTTGAACTTTGTTGG+TGG | 0.461431 | 4_1:-20726615 | Msa0539620:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 4_1:+20727126 | None:intergenic |
| CTCAAATCTGCTGTGGAACT+AGG | 0.472122 | 4_1:-20727239 | Msa0539620:CDS |
| GGACTGCAGCCATGTGTTTG+AGG | 0.478258 | 4_1:-20726766 | Msa0539620:CDS |
| AATGTTCAAGCTTGCTCTCA+AGG | 0.483289 | 4_1:-20726787 | Msa0539620:CDS |
| ATAAACTTAGTTTGTTTCAA+GGG | 0.487361 | 4_1:-20726830 | Msa0539620:CDS |
| AAGAAGCTATTTCAGGGAAA+GGG | 0.498374 | 4_1:-20725527 | Msa0539620:CDS |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4_1:-20726956 | Msa0539620:CDS |
| GAATCTTTGGTTGATGTAGC+AGG | 0.509095 | 4_1:-20726738 | Msa0539620:CDS |
| AAAGAAGCTATTTCAGGGAA+AGG | 0.517368 | 4_1:-20725528 | Msa0539620:CDS |
| CACAGCAGATTTGAGTGCCA+TGG | 0.520024 | 4_1:+20727247 | None:intergenic |
| ACAGTAAAGAAGCTATTTCA+GGG | 0.521168 | 4_1:-20725533 | Msa0539620:CDS |
| CAGCTGTGAAAGGCAAAGAT+GGG | 0.527384 | 4_1:-20727076 | Msa0539620:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4_1:-20726922 | Msa0539620:CDS |
| CAAATGGATTTCAAGAGCAA+TGG | 0.555834 | 4_1:-20727338 | Msa0539620:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_1:+20726570 | None:intergenic |
| TAAACTTAGTTTGTTTCAAG+GGG | 0.557782 | 4_1:-20726829 | Msa0539620:CDS |
| AGCACTTTATGAAAGTGCAA+TGG | 0.570154 | 4_1:-20726895 | Msa0539620:CDS |
| AGAGACTTGAAGCCGCATAT+GGG | 0.571433 | 4_1:+20725321 | None:intergenic |
| ATACAGCTTTATAAGTTCCA+TGG | 0.573273 | 4_1:-20727264 | Msa0539620:CDS |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4_1:-20725436 | Msa0539620:CDS |
| CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 4_1:-20727020 | Msa0539620:CDS |
| CATGGCACTCAAATCTGCTG+TGG | 0.591711 | 4_1:-20727246 | Msa0539620:CDS |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4_1:+20726954 | None:intergenic |
| CATTTGTGAATCAGCTGCCA+TGG | 0.594995 | 4_1:+20726806 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4_1:+20725440 | None:intergenic |
| TAGTTTGTTTCAAGGGGCCA+TGG | 0.599443 | 4_1:-20726823 | Msa0539620:CDS |
| AAAACAGTGCATTTGATGTG+AGG | 0.606781 | 4_1:+20726675 | None:intergenic |
| AGGGTGAAGTTTCAAAGATG+AGG | 0.607728 | 4_1:+20727163 | None:intergenic |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4_1:+20726573 | None:intergenic |
| TACAAGATTACTCCCATATG+CGG | 0.624719 | 4_1:-20725333 | Msa0539620:CDS |
| GTAGATGCAATCCACAAACA+TGG | 0.627357 | 4_1:-20727212 | Msa0539620:CDS |
| ACTTTATGAAAGTGCAATGG+GGG | 0.627971 | 4_1:-20726892 | Msa0539620:CDS |
| ATAGGACACTAACTTTAGAA+GGG | 0.629455 | 4_1:+20727144 | None:intergenic |
| TCTTTGGTTGATGTAGCAGG+TGG | 0.640559 | 4_1:-20726735 | Msa0539620:CDS |
| TTGCGCTTGCTAACCCACGA+TGG | 0.643441 | 4_1:-20727113 | Msa0539620:CDS |
| ATTCCAAACCCTCAAACACA+TGG | 0.643702 | 4_1:+20726757 | None:intergenic |
| GATAAGTTAGCAACAACCTG+TGG | 0.647209 | 4_1:+20726645 | None:intergenic |
| CACTTTATGAAAGTGCAATG+GGG | 0.650114 | 4_1:-20726893 | Msa0539620:CDS |
| TGAAGAATTCCCTTAACAAG+TGG | 0.661082 | 4_1:+20726978 | None:intergenic |
| AAGAAACTCATATATGACGC+AGG | 0.661175 | 4_1:-20725366 | Msa0539620:CDS |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4_1:-20726928 | Msa0539620:CDS |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4_1:+20726574 | None:intergenic |
| AGCTGTGAAAGGCAAAGATG+GGG | 0.684767 | 4_1:-20727075 | Msa0539620:CDS |
| CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 4_1:+20727023 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTATTTTAATTTAT+TGG | - | chr4_1:20726929-20726948 | Msa0539620:CDS | 0.0% |
| !!! | ATAATATTATTTTAATTTAT+TGG | - | chr4_1:20726929-20726948 | Msa0539620:CDS | 0.0% |
| !! | TCAAAAAGTAAAAATTAAAA+TGG | + | chr4_1:20726075-20726094 | None:intergenic | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr4_1:20726630-20726649 | Msa0539620:CDS | 10.0% |
| !!! | TTTTACAATTTTATTTCTTT+GGG | + | chr4_1:20726910-20726929 | None:intergenic | 10.0% |
| !!! | ATTTTACAATTTTATTTCTT+TGG | + | chr4_1:20726911-20726930 | None:intergenic | 10.0% |
| !! | TCAAAAAGTAAAAATTAAAA+TGG | + | chr4_1:20726075-20726094 | None:intergenic | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr4_1:20726630-20726649 | Msa0539620:CDS | 10.0% |
| !!! | TTTTACAATTTTATTTCTTT+GGG | + | chr4_1:20726910-20726929 | None:intergenic | 10.0% |
| !!! | ATTTTACAATTTTATTTCTT+TGG | + | chr4_1:20726911-20726930 | None:intergenic | 10.0% |
| !! | AGTTTAATCTATAAAACAAA+TGG | - | chr4_1:20725229-20725248 | Msa0539620:three_prime_UTR | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | + | chr4_1:20725720-20725739 | None:intergenic | 15.0% |
| !! | CATATATAGACAAAATAAAA+TGG | + | chr4_1:20726100-20726119 | None:intergenic | 15.0% |
| !! | AGATAAAAAAAAATTACATG+TGG | - | chr4_1:20726149-20726168 | Msa0539620:intron | 15.0% |
| !! | GATAAAAAAAAATTACATGT+GGG | - | chr4_1:20726150-20726169 | Msa0539620:intron | 15.0% |
| !! | ATAAAAAAAAATTACATGTG+GGG | - | chr4_1:20726151-20726170 | Msa0539620:intron | 15.0% |
| !! | AGTTTAATCTATAAAACAAA+TGG | - | chr4_1:20725229-20725248 | Msa0539620:three_prime_UTR | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | + | chr4_1:20725720-20725739 | None:intergenic | 15.0% |
| !! | CATATATAGACAAAATAAAA+TGG | + | chr4_1:20726100-20726119 | None:intergenic | 15.0% |
| !! | AGATAAAAAAAAATTACATG+TGG | - | chr4_1:20726149-20726168 | Msa0539620:intron | 15.0% |
| !! | GATAAAAAAAAATTACATGT+GGG | - | chr4_1:20726150-20726169 | Msa0539620:intron | 15.0% |
| !! | ATAAAAAAAAATTACATGTG+GGG | - | chr4_1:20726151-20726170 | Msa0539620:intron | 15.0% |
| !! | TTGAAACAAACTAAGTTTAT+CGG | + | chr4_1:20725753-20725772 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | - | chr4_1:20725753-20725772 | Msa0539620:intron | 20.0% |
| !!! | CGTAAGAACAATTTTAATTT+TGG | + | chr4_1:20726358-20726377 | None:intergenic | 20.0% |
| !!! | CGTAAGAACAATTTTAATTT+TGG | + | chr4_1:20726358-20726377 | None:intergenic | 20.0% |
| !! | ACAAATTTATATCTTTGATC+AGG | + | chr4_1:20726575-20726594 | None:intergenic | 20.0% |
| !! | TGATCAAAGATATAAATTTG+TGG | - | chr4_1:20726574-20726593 | Msa0539620:CDS | 20.0% |
| !! | ATTTCATTGAAAACATATGA+AGG | - | chr4_1:20726747-20726766 | Msa0539620:CDS | 20.0% |
| !!! | TTCATAGATGAAAAATTTTG+AGG | - | chr4_1:20726806-20726825 | Msa0539620:CDS | 20.0% |
| !!! | TCATAGATGAAAAATTTTGA+GGG | - | chr4_1:20726807-20726826 | Msa0539620:CDS | 20.0% |
| !! | TTGAAACAAACTAAGTTTAT+CGG | + | chr4_1:20725753-20725772 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | - | chr4_1:20725753-20725772 | Msa0539620:intron | 20.0% |
| !!! | CGTAAGAACAATTTTAATTT+TGG | + | chr4_1:20726358-20726377 | None:intergenic | 20.0% |
| !!! | CGTAAGAACAATTTTAATTT+TGG | + | chr4_1:20726358-20726377 | None:intergenic | 20.0% |
| !! | ACAAATTTATATCTTTGATC+AGG | + | chr4_1:20726575-20726594 | None:intergenic | 20.0% |
| !! | TGATCAAAGATATAAATTTG+TGG | - | chr4_1:20726574-20726593 | Msa0539620:CDS | 20.0% |
| !! | ATTTCATTGAAAACATATGA+AGG | - | chr4_1:20726747-20726766 | Msa0539620:CDS | 20.0% |
| !!! | TTCATAGATGAAAAATTTTG+AGG | - | chr4_1:20726806-20726825 | Msa0539620:CDS | 20.0% |
| !!! | TCATAGATGAAAAATTTTGA+GGG | - | chr4_1:20726807-20726826 | Msa0539620:CDS | 20.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | - | chr4_1:20725752-20725771 | Msa0539620:intron | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | - | chr4_1:20725754-20725773 | Msa0539620:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | - | chr4_1:20725965-20725984 | Msa0539620:intron | 25.0% |
| ! | ATGTTCATGATTTCATAATC+AGG | - | chr4_1:20726117-20726136 | Msa0539620:intron | 25.0% |
| !! | TATACAGAGAGAGATATTTT+CGG | + | chr4_1:20726520-20726539 | None:intergenic | 25.0% |
| ! | AATCAAATGTTGGTACATTT+AGG | - | chr4_1:20726864-20726883 | Msa0539620:CDS | 25.0% |
| ! | ATCAAATGTTGGTACATTTA+GGG | - | chr4_1:20726865-20726884 | Msa0539620:CDS | 25.0% |
| ! | ACTGTTCTTCAATATCTTTA+AGG | + | chr4_1:20727035-20727054 | None:intergenic | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | - | chr4_1:20727194-20727213 | Msa0539620:CDS | 25.0% |
| ! | GCAACAACTAATTAAAATCA+AGG | + | chr4_1:20727301-20727320 | None:intergenic | 25.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | - | chr4_1:20725752-20725771 | Msa0539620:intron | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | - | chr4_1:20725754-20725773 | Msa0539620:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | - | chr4_1:20725965-20725984 | Msa0539620:intron | 25.0% |
| ! | ATGTTCATGATTTCATAATC+AGG | - | chr4_1:20726117-20726136 | Msa0539620:intron | 25.0% |
| !! | TATACAGAGAGAGATATTTT+CGG | + | chr4_1:20726520-20726539 | None:intergenic | 25.0% |
| ! | AATCAAATGTTGGTACATTT+AGG | - | chr4_1:20726864-20726883 | Msa0539620:CDS | 25.0% |
| ! | ATCAAATGTTGGTACATTTA+GGG | - | chr4_1:20726865-20726884 | Msa0539620:CDS | 25.0% |
| ! | ACTGTTCTTCAATATCTTTA+AGG | + | chr4_1:20727035-20727054 | None:intergenic | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | - | chr4_1:20727194-20727213 | Msa0539620:CDS | 25.0% |
| ! | GCAACAACTAATTAAAATCA+AGG | + | chr4_1:20727301-20727320 | None:intergenic | 25.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | - | chr4_1:20725319-20725338 | Msa0539620:CDS | 30.0% |
| ! | ATAGGACACTAACTTTAGAA+GGG | + | chr4_1:20725442-20725461 | None:intergenic | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | + | chr4_1:20725443-20725462 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | - | chr4_1:20725444-20725463 | Msa0539620:CDS | 30.0% | |
| CAAAATTTGAACTTTGTTGG+TGG | - | chr4_1:20725968-20725987 | Msa0539620:intron | 30.0% | |
| TTTATATCTTTGATCAGGCA+CGG | + | chr4_1:20726570-20726589 | None:intergenic | 30.0% | |
| !!! | ATAAGTTTTGACTAACACGT+AGG | - | chr4_1:20726776-20726795 | Msa0539620:CDS | 30.0% |
| !!! | TAAGTTTTGACTAACACGTA+GGG | - | chr4_1:20726777-20726796 | Msa0539620:CDS | 30.0% |
| !! | AAGCCTAAGGAATATTTTAG+AGG | - | chr4_1:20726835-20726854 | Msa0539620:CDS | 30.0% |
| !! | AGCCTAAGGAATATTTTAGA+GGG | - | chr4_1:20726836-20726855 | Msa0539620:CDS | 30.0% |
| TCAAATGTTGGTACATTTAG+GGG | - | chr4_1:20726866-20726885 | Msa0539620:CDS | 30.0% | |
| ! | CTTTGGGTTAAATACGTAAA+TGG | + | chr4_1:20726894-20726913 | None:intergenic | 30.0% |
| ATCTCAAATGTCTTTCAAAG+TGG | - | chr4_1:20726981-20727000 | Msa0539620:CDS | 30.0% | |
| TCTCAAATGTCTTTCAAAGT+GGG | - | chr4_1:20726982-20727001 | Msa0539620:CDS | 30.0% | |
| ! | AACAGTAAAGAAGCTATTTC+AGG | - | chr4_1:20727049-20727068 | Msa0539620:CDS | 30.0% |
| ! | ACAGTAAAGAAGCTATTTCA+GGG | - | chr4_1:20727050-20727069 | Msa0539620:CDS | 30.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | - | chr4_1:20725319-20725338 | Msa0539620:CDS | 30.0% |
| ! | ATAGGACACTAACTTTAGAA+GGG | + | chr4_1:20725442-20725461 | None:intergenic | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | + | chr4_1:20725443-20725462 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | - | chr4_1:20725444-20725463 | Msa0539620:CDS | 30.0% | |
| CAAAATTTGAACTTTGTTGG+TGG | - | chr4_1:20725968-20725987 | Msa0539620:intron | 30.0% | |
| TTTATATCTTTGATCAGGCA+CGG | + | chr4_1:20726570-20726589 | None:intergenic | 30.0% | |
| !!! | ATAAGTTTTGACTAACACGT+AGG | - | chr4_1:20726776-20726795 | Msa0539620:CDS | 30.0% |
| !!! | TAAGTTTTGACTAACACGTA+GGG | - | chr4_1:20726777-20726796 | Msa0539620:CDS | 30.0% |
| !! | AAGCCTAAGGAATATTTTAG+AGG | - | chr4_1:20726835-20726854 | Msa0539620:CDS | 30.0% |
| !! | AGCCTAAGGAATATTTTAGA+GGG | - | chr4_1:20726836-20726855 | Msa0539620:CDS | 30.0% |
| TCAAATGTTGGTACATTTAG+GGG | - | chr4_1:20726866-20726885 | Msa0539620:CDS | 30.0% | |
| ! | CTTTGGGTTAAATACGTAAA+TGG | + | chr4_1:20726894-20726913 | None:intergenic | 30.0% |
| ATCTCAAATGTCTTTCAAAG+TGG | - | chr4_1:20726981-20727000 | Msa0539620:CDS | 30.0% | |
| TCTCAAATGTCTTTCAAAGT+GGG | - | chr4_1:20726982-20727001 | Msa0539620:CDS | 30.0% | |
| ! | AACAGTAAAGAAGCTATTTC+AGG | - | chr4_1:20727049-20727068 | Msa0539620:CDS | 30.0% |
| ! | ACAGTAAAGAAGCTATTTCA+GGG | - | chr4_1:20727050-20727069 | Msa0539620:CDS | 30.0% |
| ! | CAAATGGATTTCAAGAGCAA+TGG | - | chr4_1:20725245-20725264 | Msa0539620:three_prime_UTR | 35.0% |
| TTCAAAGATGAGGCTAATTC+AGG | + | chr4_1:20725413-20725432 | None:intergenic | 35.0% | |
| ! | TTTTGCAAAGAAACCATCGT+GGG | + | chr4_1:20725486-20725505 | None:intergenic | 35.0% |
| ! | TTTTTGCAAAGAAACCATCG+TGG | + | chr4_1:20725487-20725506 | None:intergenic | 35.0% |
| TTTGCAAAAACAGCTGTGAA+AGG | - | chr4_1:20725497-20725516 | Msa0539620:CDS | 35.0% | |
| !! | TGTTTTGCACCACTTGTTAA+GGG | - | chr4_1:20725596-20725615 | Msa0539620:intron | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | + | chr4_1:20725608-20725627 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | - | chr4_1:20725619-20725638 | Msa0539620:intron | 35.0% | |
| ! | AGCACTTTATGAAAGTGCAA+TGG | - | chr4_1:20725688-20725707 | Msa0539620:intron | 35.0% |
| ! | GCACTTTATGAAAGTGCAAT+GGG | - | chr4_1:20725689-20725708 | Msa0539620:intron | 35.0% |
| ! | CACTTTATGAAAGTGCAATG+GGG | - | chr4_1:20725690-20725709 | Msa0539620:intron | 35.0% |
| ! | ACTTTATGAAAGTGCAATGG+GGG | - | chr4_1:20725691-20725710 | Msa0539620:intron | 35.0% |
| AAAACAGTGCATTTGATGTG+AGG | + | chr4_1:20725911-20725930 | None:intergenic | 35.0% | |
| !! | GTCCCTCTAAAATATTCCTT+AGG | + | chr4_1:20726841-20726860 | None:intergenic | 35.0% |
| GAGGGACTAAAATCAAATGT+TGG | - | chr4_1:20726854-20726873 | Msa0539620:CDS | 35.0% | |
| CAAATGTTGGTACATTTAGG+GGG | - | chr4_1:20726867-20726886 | Msa0539620:CDS | 35.0% | |
| !! | AAAGTGGGTTTTGCATGATT+GGG | - | chr4_1:20726997-20727016 | Msa0539620:CDS | 35.0% |
| ! | AAAGAAGCTATTTCAGGGAA+AGG | - | chr4_1:20727055-20727074 | Msa0539620:CDS | 35.0% |
| ! | AAGAAGCTATTTCAGGGAAA+GGG | - | chr4_1:20727056-20727075 | Msa0539620:CDS | 35.0% |
| ATTTCAGGGAAAGGGAAAAA+AGG | - | chr4_1:20727064-20727083 | Msa0539620:CDS | 35.0% | |
| GTAATGATGACTCTGCATAA+TGG | - | chr4_1:20727169-20727188 | Msa0539620:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | - | chr4_1:20727217-20727236 | Msa0539620:CDS | 35.0% | |
| TACAAGATTACTCCCATATG+CGG | - | chr4_1:20727250-20727269 | Msa0539620:CDS | 35.0% | |
| ! | CAAATGGATTTCAAGAGCAA+TGG | - | chr4_1:20725245-20725264 | Msa0539620:three_prime_UTR | 35.0% |
| TTCAAAGATGAGGCTAATTC+AGG | + | chr4_1:20725413-20725432 | None:intergenic | 35.0% | |
| ! | TTTTGCAAAGAAACCATCGT+GGG | + | chr4_1:20725486-20725505 | None:intergenic | 35.0% |
| ! | TTTTTGCAAAGAAACCATCG+TGG | + | chr4_1:20725487-20725506 | None:intergenic | 35.0% |
| TTTGCAAAAACAGCTGTGAA+AGG | - | chr4_1:20725497-20725516 | Msa0539620:CDS | 35.0% | |
| !! | TGTTTTGCACCACTTGTTAA+GGG | - | chr4_1:20725596-20725615 | Msa0539620:intron | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | + | chr4_1:20725608-20725627 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | - | chr4_1:20725619-20725638 | Msa0539620:intron | 35.0% | |
| ! | AGCACTTTATGAAAGTGCAA+TGG | - | chr4_1:20725688-20725707 | Msa0539620:intron | 35.0% |
| ! | GCACTTTATGAAAGTGCAAT+GGG | - | chr4_1:20725689-20725708 | Msa0539620:intron | 35.0% |
| ! | CACTTTATGAAAGTGCAATG+GGG | - | chr4_1:20725690-20725709 | Msa0539620:intron | 35.0% |
| ! | ACTTTATGAAAGTGCAATGG+GGG | - | chr4_1:20725691-20725710 | Msa0539620:intron | 35.0% |
| AAAACAGTGCATTTGATGTG+AGG | + | chr4_1:20725911-20725930 | None:intergenic | 35.0% | |
| !! | GTCCCTCTAAAATATTCCTT+AGG | + | chr4_1:20726841-20726860 | None:intergenic | 35.0% |
| GAGGGACTAAAATCAAATGT+TGG | - | chr4_1:20726854-20726873 | Msa0539620:CDS | 35.0% | |
| CAAATGTTGGTACATTTAGG+GGG | - | chr4_1:20726867-20726886 | Msa0539620:CDS | 35.0% | |
| !! | AAAGTGGGTTTTGCATGATT+GGG | - | chr4_1:20726997-20727016 | Msa0539620:CDS | 35.0% |
| ! | AAAGAAGCTATTTCAGGGAA+AGG | - | chr4_1:20727055-20727074 | Msa0539620:CDS | 35.0% |
| ! | AAGAAGCTATTTCAGGGAAA+GGG | - | chr4_1:20727056-20727075 | Msa0539620:CDS | 35.0% |
| ATTTCAGGGAAAGGGAAAAA+AGG | - | chr4_1:20727064-20727083 | Msa0539620:CDS | 35.0% | |
| GTAATGATGACTCTGCATAA+TGG | - | chr4_1:20727169-20727188 | Msa0539620:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | - | chr4_1:20727217-20727236 | Msa0539620:CDS | 35.0% | |
| TACAAGATTACTCCCATATG+CGG | - | chr4_1:20727250-20727269 | Msa0539620:CDS | 35.0% | |
| GTAGATGCAATCCACAAACA+TGG | - | chr4_1:20725371-20725390 | Msa0539620:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | + | chr4_1:20725385-20725404 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | + | chr4_1:20725401-20725420 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | + | chr4_1:20725423-20725442 | None:intergenic | 40.0% | |
| CTTAACAAGTGGTGCAAAAC+AGG | + | chr4_1:20725597-20725616 | None:intergenic | 40.0% | |
| !! | CTGTTTTGCACCACTTGTTA+AGG | - | chr4_1:20725595-20725614 | Msa0539620:intron | 40.0% |
| ATCCATGTTCTCTGGATATG+TGG | - | chr4_1:20725627-20725646 | Msa0539620:intron | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | + | chr4_1:20725657-20725676 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | - | chr4_1:20725655-20725674 | Msa0539620:intron | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | - | chr4_1:20725796-20725815 | Msa0539620:intron | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | + | chr4_1:20725829-20725848 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | - | chr4_1:20725832-20725851 | Msa0539620:intron | 40.0% |
| ! | GAATCTTTGGTTGATGTAGC+AGG | - | chr4_1:20725845-20725864 | Msa0539620:intron | 40.0% |
| !! | CACTGTTTTAGATCAACCAC+AGG | - | chr4_1:20725922-20725941 | Msa0539620:intron | 40.0% |
| GATAAGTTAGCAACAACCTG+TGG | + | chr4_1:20725941-20725960 | None:intergenic | 40.0% | |
| CAGGTTGTTGCTAACTTATC+TGG | - | chr4_1:20725941-20725960 | Msa0539620:intron | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_1:20726016-20726035 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_1:20726015-20726034 | Msa0539620:intron | 40.0% |
| ATCCACTCAGATGAGATTTG+GGG | + | chr4_1:20726547-20726566 | None:intergenic | 40.0% | |
| GATCCACTCAGATGAGATTT+GGG | + | chr4_1:20726548-20726567 | None:intergenic | 40.0% | |
| !! | CAAAGTGGGTTTTGCATGAT+TGG | - | chr4_1:20726996-20727015 | Msa0539620:CDS | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | + | chr4_1:20727146-20727165 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | - | chr4_1:20727147-20727166 | Msa0539620:CDS | 40.0% | |
| GTAGATGCAATCCACAAACA+TGG | - | chr4_1:20725371-20725390 | Msa0539620:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | + | chr4_1:20725385-20725404 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | + | chr4_1:20725401-20725420 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | + | chr4_1:20725423-20725442 | None:intergenic | 40.0% | |
| CTTAACAAGTGGTGCAAAAC+AGG | + | chr4_1:20725597-20725616 | None:intergenic | 40.0% | |
| !! | CTGTTTTGCACCACTTGTTA+AGG | - | chr4_1:20725595-20725614 | Msa0539620:intron | 40.0% |
| ATCCATGTTCTCTGGATATG+TGG | - | chr4_1:20725627-20725646 | Msa0539620:intron | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | + | chr4_1:20725657-20725676 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | - | chr4_1:20725655-20725674 | Msa0539620:intron | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | - | chr4_1:20725796-20725815 | Msa0539620:intron | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | + | chr4_1:20725829-20725848 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | - | chr4_1:20725832-20725851 | Msa0539620:intron | 40.0% |
| ! | GAATCTTTGGTTGATGTAGC+AGG | - | chr4_1:20725845-20725864 | Msa0539620:intron | 40.0% |
| !! | CACTGTTTTAGATCAACCAC+AGG | - | chr4_1:20725922-20725941 | Msa0539620:intron | 40.0% |
| GATAAGTTAGCAACAACCTG+TGG | + | chr4_1:20725941-20725960 | None:intergenic | 40.0% | |
| CAGGTTGTTGCTAACTTATC+TGG | - | chr4_1:20725941-20725960 | Msa0539620:intron | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_1:20726016-20726035 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_1:20726015-20726034 | Msa0539620:intron | 40.0% |
| ATCCACTCAGATGAGATTTG+GGG | + | chr4_1:20726547-20726566 | None:intergenic | 40.0% | |
| GATCCACTCAGATGAGATTT+GGG | + | chr4_1:20726548-20726567 | None:intergenic | 40.0% | |
| !! | CAAAGTGGGTTTTGCATGAT+TGG | - | chr4_1:20726996-20727015 | Msa0539620:CDS | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | + | chr4_1:20727146-20727165 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | - | chr4_1:20727147-20727166 | Msa0539620:CDS | 40.0% | |
| CTCAAATCTGCTGTGGAACT+AGG | - | chr4_1:20725344-20725363 | Msa0539620:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | + | chr4_1:20725460-20725479 | None:intergenic | 45.0% | |
| ACAGCTGTGAAAGGCAAAGA+TGG | - | chr4_1:20725506-20725525 | Msa0539620:CDS | 45.0% | |
| CAGCTGTGAAAGGCAAAGAT+GGG | - | chr4_1:20725507-20725526 | Msa0539620:CDS | 45.0% | |
| AGCTGTGAAAGGCAAAGATG+GGG | - | chr4_1:20725508-20725527 | Msa0539620:CDS | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | + | chr4_1:20725563-20725582 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | + | chr4_1:20725566-20725585 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | - | chr4_1:20725563-20725582 | Msa0539620:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | + | chr4_1:20725632-20725651 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | - | chr4_1:20725645-20725664 | Msa0539620:intron | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | - | chr4_1:20725661-20725680 | Msa0539620:intron | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | - | chr4_1:20725760-20725779 | Msa0539620:intron | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | + | chr4_1:20725780-20725799 | None:intergenic | 45.0% | |
| ! | TCTTTGGTTGATGTAGCAGG+TGG | - | chr4_1:20725848-20725867 | Msa0539620:intron | 45.0% |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_1:20726012-20726031 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_1:20726013-20726032 | None:intergenic | 45.0% | |
| GGATCCACTCAGATGAGATT+TGG | + | chr4_1:20726549-20726568 | None:intergenic | 45.0% | |
| TTTGAGGGATCGAAAGCCTA+AGG | - | chr4_1:20726822-20726841 | Msa0539620:CDS | 45.0% | |
| AGAGACTTGAAGCCGCATAT+GGG | + | chr4_1:20727265-20727284 | None:intergenic | 45.0% | |
| CTCAAATCTGCTGTGGAACT+AGG | - | chr4_1:20725344-20725363 | Msa0539620:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | + | chr4_1:20725460-20725479 | None:intergenic | 45.0% | |
| ACAGCTGTGAAAGGCAAAGA+TGG | - | chr4_1:20725506-20725525 | Msa0539620:CDS | 45.0% | |
| CAGCTGTGAAAGGCAAAGAT+GGG | - | chr4_1:20725507-20725526 | Msa0539620:CDS | 45.0% | |
| AGCTGTGAAAGGCAAAGATG+GGG | - | chr4_1:20725508-20725527 | Msa0539620:CDS | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | + | chr4_1:20725563-20725582 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | + | chr4_1:20725566-20725585 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | - | chr4_1:20725563-20725582 | Msa0539620:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | + | chr4_1:20725632-20725651 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | - | chr4_1:20725645-20725664 | Msa0539620:intron | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | - | chr4_1:20725661-20725680 | Msa0539620:intron | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | - | chr4_1:20725760-20725779 | Msa0539620:intron | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | + | chr4_1:20725780-20725799 | None:intergenic | 45.0% | |
| ! | TCTTTGGTTGATGTAGCAGG+TGG | - | chr4_1:20725848-20725867 | Msa0539620:intron | 45.0% |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_1:20726012-20726031 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_1:20726013-20726032 | None:intergenic | 45.0% | |
| GGATCCACTCAGATGAGATT+TGG | + | chr4_1:20726549-20726568 | None:intergenic | 45.0% | |
| TTTGAGGGATCGAAAGCCTA+AGG | - | chr4_1:20726822-20726841 | Msa0539620:CDS | 45.0% | |
| AGAGACTTGAAGCCGCATAT+GGG | + | chr4_1:20727265-20727284 | None:intergenic | 45.0% | |
| !!! | TTTAATTTTTCTAAATATAA+TGG | + | chr4_1:20726320-20726339 | None:intergenic | 5.0% |
| !!! | TTTAATTTTTCTAAATATAA+TGG | + | chr4_1:20726320-20726339 | None:intergenic | 5.0% |
| CACAGCAGATTTGAGTGCCA+TGG | + | chr4_1:20725339-20725358 | None:intergenic | 50.0% | |
| CATGGCACTCAAATCTGCTG+TGG | - | chr4_1:20725337-20725356 | Msa0539620:CDS | 50.0% | |
| GACTGCAGCCATGTGTTTGA+GGG | - | chr4_1:20725818-20725837 | Msa0539620:intron | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | - | chr4_1:20725823-20725842 | Msa0539620:intron | 50.0% | |
| GTTGATGTAGCAGGTGGAAC+TGG | - | chr4_1:20725854-20725873 | Msa0539620:intron | 50.0% | |
| TGCCCCAAATCTCATCTGAG+TGG | - | chr4_1:20726542-20726561 | Msa0539620:intron | 50.0% | |
| GAGAGACTTGAAGCCGCATA+TGG | + | chr4_1:20727266-20727285 | None:intergenic | 50.0% | |
| CACAGCAGATTTGAGTGCCA+TGG | + | chr4_1:20725339-20725358 | None:intergenic | 50.0% | |
| CATGGCACTCAAATCTGCTG+TGG | - | chr4_1:20725337-20725356 | Msa0539620:CDS | 50.0% | |
| GACTGCAGCCATGTGTTTGA+GGG | - | chr4_1:20725818-20725837 | Msa0539620:intron | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | - | chr4_1:20725823-20725842 | Msa0539620:intron | 50.0% | |
| GTTGATGTAGCAGGTGGAAC+TGG | - | chr4_1:20725854-20725873 | Msa0539620:intron | 50.0% | |
| TGCCCCAAATCTCATCTGAG+TGG | - | chr4_1:20726542-20726561 | Msa0539620:intron | 50.0% | |
| GAGAGACTTGAAGCCGCATA+TGG | + | chr4_1:20727266-20727285 | None:intergenic | 50.0% | |
| ! | TTGCGCTTGCTAACCCACGA+TGG | - | chr4_1:20725470-20725489 | Msa0539620:CDS | 55.0% |
| GGACTGCAGCCATGTGTTTG+AGG | - | chr4_1:20725817-20725836 | Msa0539620:intron | 55.0% | |
| ! | TTGCGCTTGCTAACCCACGA+TGG | - | chr4_1:20725470-20725489 | Msa0539620:CDS | 55.0% |
| GGACTGCAGCCATGTGTTTG+AGG | - | chr4_1:20725817-20725836 | Msa0539620:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20725198 | 20727407 | 20725198 | ID=Msa0539620;Name=Msa0539620 |
| chr4_1 | mRNA | 20725198 | 20727407 | 20725198 | ID=Msa0539620-mRNA-1;Parent=Msa0539620;Name=Msa0539620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=50|1|1|1|1|1|2|104|363 |
| chr4_1 | exon | 20725198 | 20725604 | 20725198 | ID=Msa0539620-mRNA-1:exon:5934;Parent=Msa0539620-mRNA-1 |
| chr4_1 | exon | 20726569 | 20727407 | 20726569 | ID=Msa0539620-mRNA-1:exon:5933;Parent=Msa0539620-mRNA-1 |
| chr4_1 | five_prime_UTR | 20727358 | 20727407 | 20727358 | ID=Msa0539620-mRNA-1:five_prime_utr;Parent=Msa0539620-mRNA-1 |
| chr4_1 | CDS | 20726569 | 20727357 | 20726569 | ID=Msa0539620-mRNA-1:cds;Parent=Msa0539620-mRNA-1 |
| chr4_1 | CDS | 20725302 | 20725604 | 20725302 | ID=Msa0539620-mRNA-1:cds;Parent=Msa0539620-mRNA-1 |
| chr4_1 | three_prime_UTR | 20725198 | 20725301 | 20725198 | ID=Msa0539620-mRNA-1:three_prime_utr;Parent=Msa0539620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
