Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596630 | XP_013455361.1 | 90.709 | 409 | 22 | 4 | 1 | 409 | 1 | 393 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596630 | sp|Q9LVA0|BAG7_ARATH | 42.241 | 464 | 192 | 14 | 1 | 407 | 1 | 445 | 2.36e-88 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0540670 | Msa0596630 | 0.827589 | 1.439100e-54 | -8.615850e-47 |
| Msa0579080 | Msa0596630 | 0.810029 | 1.412507e-50 | -8.615850e-47 |
| Msa0596630 | Msa0675120 | 0.882545 | 9.519566e-71 | -8.615850e-47 |
| Msa0596630 | Msa1112890 | 0.827920 | 1.198237e-54 | -8.615850e-47 |
| Msa0596630 | Msa1155990 | 0.837911 | 3.929748e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596630 | MtrunA17_Chr4g0018451 | 90.709 | 409 | 22 | 4 | 1 | 409 | 1 | 393 | 0.0 | 664 |
| Msa0596630 | MtrunA17_Chr8g0347891 | 30.508 | 118 | 80 | 1 | 251 | 366 | 467 | 584 | 7.49e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596630 | AT5G62390.1 | 42.241 | 464 | 192 | 14 | 1 | 407 | 1 | 445 | 2.40e-89 | 278 |
Find 120 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAATAGCCAGCTCTCTA+AGG | 0.271737 | 4_2:+27279389 | None:intergenic |
| CACCTTCTTCGATTTCCTTC+CGG | 0.276264 | 4_2:+27278504 | None:intergenic |
| AAATGGACGGCTGAGATTAA+AGG | 0.302872 | 4_2:-27281590 | Msa0596630:CDS |
| GGCTTTCATATTTCATCTAA+TGG | 0.317196 | 4_2:-27278306 | Msa0596630:three_prime_UTR |
| CAGTGATCTTCCAGCAGGTT+GGG | 0.323133 | 4_2:+27278568 | None:intergenic |
| TATTGCAAAATCCAAGTTAA+AGG | 0.339832 | 4_2:-27279374 | Msa0596630:CDS |
| GGGAGGATAGTGGGAATGAT+AGG | 0.341527 | 4_2:-27281562 | Msa0596630:CDS |
| GGTTTGATAGAAAGTATAAA+TGG | 0.378976 | 4_2:-27281679 | Msa0596630:CDS |
| AAGGCATTTGCAAAGAGGTT+TGG | 0.379969 | 4_2:-27279526 | Msa0596630:CDS |
| TGTTTACTAGTACTAAATAA+TGG | 0.388249 | 4_2:+27278185 | None:intergenic |
| TATTGCTTTCTTAATCTCAC+TGG | 0.404706 | 4_2:+27278429 | None:intergenic |
| TCGAGGAAGGAAGGGAATAA+TGG | 0.405045 | 4_2:+27281989 | None:intergenic |
| AGCTCTGATTTCCTTTAACT+TGG | 0.408724 | 4_2:+27279363 | None:intergenic |
| ATTAAAGATGGAGAGAAGAA+TGG | 0.417845 | 4_2:-27281701 | Msa0596630:CDS |
| AAGAATGACGGTGGCGGTTG+TGG | 0.420021 | 4_2:-27281761 | Msa0596630:CDS |
| CGGCTGAGATTAAAGGAAAA+GGG | 0.425111 | 4_2:-27281583 | Msa0596630:CDS |
| AAAGGAAAAGGGGAGGATAG+TGG | 0.431105 | 4_2:-27281572 | Msa0596630:CDS |
| CAGATCGTCATCGGAGGAAA+GGG | 0.433313 | 4_2:-27281806 | Msa0596630:CDS |
| TATACATTTGCTGTTGAAAG+TGG | 0.443436 | 4_2:-27281536 | Msa0596630:CDS |
| TTGAAAGGGAATGGTGTGGT+GGG | 0.448106 | 4_2:+27282233 | None:intergenic |
| ATTAAAGATGAGATTAAAGA+TGG | 0.449408 | 4_2:-27281713 | Msa0596630:CDS |
| TTAAAGATGGAGAGAAGAAT+GGG | 0.455656 | 4_2:-27281700 | Msa0596630:CDS |
| GAAATCAATGGTGGATGAGC+TGG | 0.456593 | 4_2:-27278615 | Msa0596630:CDS |
| AGTGAGTGAAATCGGTGTTA+AGG | 0.467927 | 4_2:+27282121 | None:intergenic |
| TCCTTCCGGATGACTCCATC+AGG | 0.481251 | 4_2:+27278518 | None:intergenic |
| AGAGGAAGAAGAAGAGAACA+AGG | 0.483805 | 4_2:+27282039 | None:intergenic |
| GTGGTAGATCCCCAACCTGC+TGG | 0.488649 | 4_2:-27278578 | Msa0596630:CDS |
| TGGTGGGGTTTAAAGTGTGA+TGG | 0.493747 | 4_2:+27282249 | None:intergenic |
| AAGGAAAAGGGGAGGATAGT+GGG | 0.496611 | 4_2:-27281571 | Msa0596630:CDS |
| GAAGATCACTGTCCTTCAAA+AGG | 0.497000 | 4_2:-27278556 | Msa0596630:CDS |
| AGAAAGAAGATTGCGTATTG+TGG | 0.500097 | 4_2:-27281423 | Msa0596630:CDS |
| ACAACTTTATGATCATCATC+AGG | 0.501579 | 4_2:+27281389 | None:intergenic |
| ACGGCTGAGATTAAAGGAAA+AGG | 0.506485 | 4_2:-27281584 | Msa0596630:CDS |
| AGTCAGTGAGTGAGTGAAAT+CGG | 0.507383 | 4_2:+27282113 | None:intergenic |
| ACAGTGATCTTCCAGCAGGT+TGG | 0.507749 | 4_2:+27278567 | None:intergenic |
| GTTGAAAGGGAATGGTGTGG+TGG | 0.513929 | 4_2:+27282232 | None:intergenic |
| CGGTTGTGAAGAATCTGAAA+TGG | 0.514882 | 4_2:-27281607 | Msa0596630:CDS |
| GGTTTAAAGTGTGATGGAGG+TGG | 0.517686 | 4_2:+27282255 | None:intergenic |
| TGGGGTTTAAAGTGTGATGG+AGG | 0.519035 | 4_2:+27282252 | None:intergenic |
| ACTCAGCGACTCGGTCACTC+AGG | 0.521666 | 4_2:+27281846 | None:intergenic |
| CACGAAGAGCCTTTGACCTA+CGG | 0.522271 | 4_2:+27279413 | None:intergenic |
| GGAGATTGTTCGAGGAAGGA+AGG | 0.523689 | 4_2:+27281980 | None:intergenic |
| ATCTCACTGGGATACTTCCT+AGG | 0.523827 | 4_2:+27278442 | None:intergenic |
| GCAGATCGTCATCGGAGGAA+AGG | 0.527239 | 4_2:-27281807 | Msa0596630:CDS |
| AAGGACAGTGATCTTCCAGC+AGG | 0.527636 | 4_2:+27278563 | None:intergenic |
| ACGGATCAAATACGCTCTAA+AGG | 0.532420 | 4_2:+27279432 | None:intergenic |
| TGCAATAGCCAGCTCTCTAA+GGG | 0.534983 | 4_2:+27279390 | None:intergenic |
| AGTGATCTTCCAGCAGGTTG+GGG | 0.536862 | 4_2:+27278569 | None:intergenic |
| ATCAAATACGCAGCATCTTG+AGG | 0.539023 | 4_2:+27279463 | None:intergenic |
| GCGCAGTAGATCTGCATGGA+AGG | 0.539620 | 4_2:+27281916 | None:intergenic |
| GAAAGAGAAAGAAAGTGTGA+AGG | 0.539793 | 4_2:-27281456 | Msa0596630:CDS |
| ATTGCTTTCTTAATCTCACT+GGG | 0.540374 | 4_2:+27278430 | None:intergenic |
| ATGATGATTGTGATGTTGAA+AGG | 0.542267 | 4_2:+27282218 | None:intergenic |
| TTAGAGCGTATTTGATCCGT+AGG | 0.545775 | 4_2:-27279429 | Msa0596630:CDS |
| AGTAATGAAGAAATGTGAAG+AGG | 0.546341 | 4_2:+27282021 | None:intergenic |
| TAGATCTGCAAAGAAATCAA+TGG | 0.548595 | 4_2:-27278627 | Msa0596630:CDS |
| CGATTCGAGCAGATCGTCAT+CGG | 0.549464 | 4_2:-27281815 | Msa0596630:CDS |
| CAACAAACTAAAACAGCGGA+TGG | 0.549712 | 4_2:+27278372 | None:intergenic |
| TGAAAGGGAATGGTGTGGTG+GGG | 0.551329 | 4_2:+27282234 | None:intergenic |
| CCTCACTGTTGATGCCATTG+AGG | 0.551515 | 4_2:-27279254 | Msa0596630:intron |
| ATCCGGAAGGAAATCGAAGA+AGG | 0.554549 | 4_2:-27278506 | Msa0596630:CDS |
| TCTTCGTGCCCTTAGAGAGC+TGG | 0.556613 | 4_2:-27279398 | Msa0596630:CDS |
| TATTTAGTACTAGTAAACAT+TGG | 0.557998 | 4_2:-27278181 | Msa0596630:three_prime_UTR |
| AGATCTGCATGGAAGGGAGA+TGG | 0.558123 | 4_2:+27281923 | None:intergenic |
| ATTGTGATGTTGAAAGGGAA+TGG | 0.560170 | 4_2:+27282224 | None:intergenic |
| GAGATTGTTCGAGGAAGGAA+GGG | 0.562842 | 4_2:+27281981 | None:intergenic |
| TGATGATTGTGATGTTGAAA+GGG | 0.567412 | 4_2:+27282219 | None:intergenic |
| GAAGAAGAGAACAAGGGTAA+TGG | 0.567431 | 4_2:+27282046 | None:intergenic |
| ATATGCCTGATGGAGTCATC+CGG | 0.568869 | 4_2:-27278523 | Msa0596630:CDS |
| ACTAGCTATGTGGCGTCGGA+AGG | 0.569101 | 4_2:+27279324 | None:intergenic |
| AGATCGAGATCGAACGGTAA+CGG | 0.569274 | 4_2:+27281956 | None:intergenic |
| ATGACGGTGGCGGTTGTGGT+CGG | 0.572857 | 4_2:-27281757 | Msa0596630:CDS |
| CGGTGGAGATTGTTCGAGGA+AGG | 0.573092 | 4_2:+27281976 | None:intergenic |
| CGACGCCACATAGCTAGTGA+TGG | 0.574821 | 4_2:-27279319 | Msa0596630:CDS |
| CGCAGTAGATCTGCATGGAA+GGG | 0.575195 | 4_2:+27281917 | None:intergenic |
| GAATGTGAATGAAAAGGAGA+AGG | 0.575569 | 4_2:-27281486 | Msa0596630:CDS |
| TCAAATCTTAGACTAAGATC+CGG | 0.581767 | 4_2:+27278345 | None:intergenic |
| AATGGGAGGTACTACCTCAA+TGG | 0.582597 | 4_2:+27279240 | None:intergenic |
| TGATGAAGGCATTTGCAAAG+AGG | 0.583010 | 4_2:-27279531 | Msa0596630:intron |
| CTTAACTTAGATTAAAACCA+TGG | 0.586963 | 4_2:+27278227 | None:intergenic |
| CATCACTAGCTATGTGGCGT+CGG | 0.590169 | 4_2:+27279320 | None:intergenic |
| AGGACCTTTGATATGCCTGA+TGG | 0.594745 | 4_2:-27278533 | Msa0596630:CDS |
| AAGAAGAAGAATGACGGTGG+CGG | 0.595538 | 4_2:-27281767 | Msa0596630:CDS |
| GTATTTGATCCGTAGGTCAA+AGG | 0.598182 | 4_2:-27279422 | Msa0596630:CDS |
| GTATCTTCTGAATCGAGACA+TGG | 0.606222 | 4_2:+27282087 | None:intergenic |
| GACTCCATCAGGCATATCAA+AGG | 0.607706 | 4_2:+27278529 | None:intergenic |
| GGAAGGAAGGGAATAATGGA+AGG | 0.611992 | 4_2:+27281993 | None:intergenic |
| GTAACGGTGGAGATTGTTCG+AGG | 0.613194 | 4_2:+27281972 | None:intergenic |
| GAGGAAGAAGAAGAGAACAA+GGG | 0.617295 | 4_2:+27282040 | None:intergenic |
| TGTGTAGGGAGTTGATCTGA+TGG | 0.617974 | 4_2:-27278651 | Msa0596630:intron |
| ATCTGCAAAGAAATCAATGG+TGG | 0.618866 | 4_2:-27278624 | Msa0596630:CDS |
| CCACTCCATCACTAGCTATG+TGG | 0.620746 | 4_2:+27279314 | None:intergenic |
| AGACATAGATCGAGATCGAA+CGG | 0.622354 | 4_2:+27281950 | None:intergenic |
| CCACATAGCTAGTGATGGAG+TGG | 0.623101 | 4_2:-27279314 | Msa0596630:CDS |
| GCTTTGAAGCAACAACAACT+CGG | 0.626224 | 4_2:-27281878 | Msa0596630:CDS |
| CTAAAACAGCGGATGGAATG+CGG | 0.634340 | 4_2:+27278379 | None:intergenic |
| CTCAGCGACTCGGTCACTCA+GGG | 0.634703 | 4_2:+27281847 | None:intergenic |
| TTCGAGCAGATCGTCATCGG+AGG | 0.638433 | 4_2:-27281812 | Msa0596630:CDS |
| TGATGAAGCTGAGAGTACCT+AGG | 0.646123 | 4_2:-27278459 | Msa0596630:exon |
| TGGTCGGAAGTACACGTGGA+CGG | 0.646408 | 4_2:-27281741 | Msa0596630:CDS |
| GAAAGAGAAGAAGAAATGTG+CGG | 0.646481 | 4_2:-27281627 | Msa0596630:CDS |
| GCCTGATGGAGTCATCCGGA+AGG | 0.646491 | 4_2:-27278519 | Msa0596630:CDS |
| AGATCGTCATCGGAGGAAAG+GGG | 0.652003 | 4_2:-27281805 | Msa0596630:CDS |
| CTAGCAACAAACTAAAACAG+CGG | 0.652177 | 4_2:+27278368 | None:intergenic |
| GGCTGAGATTAAAGGAAAAG+GGG | 0.652927 | 4_2:-27281582 | Msa0596630:CDS |
| GATCACTGTCCTTCAAAAGG+AGG | 0.656472 | 4_2:-27278553 | Msa0596630:CDS |
| TCACGCGCAGTAGATCTGCA+TGG | 0.658500 | 4_2:+27281912 | None:intergenic |
| GTTGTGGTCGGAAGTACACG+TGG | 0.660360 | 4_2:-27281745 | Msa0596630:CDS |
| AAACAGCGGATGGAATGCGG+TGG | 0.662985 | 4_2:+27278382 | None:intergenic |
| TCGAGATCGAACGGTAACGG+TGG | 0.668277 | 4_2:+27281959 | None:intergenic |
| GTGATGGAGTGGAACACCAG+AGG | 0.676023 | 4_2:-27279303 | Msa0596630:CDS |
| GTGACTCTAACTCAGCGACT+CGG | 0.678594 | 4_2:+27281837 | None:intergenic |
| GAAGGAAGGGAATAATGGAA+GGG | 0.689303 | 4_2:+27281994 | None:intergenic |
| TGAGATTAAAGGAAAAGGGG+AGG | 0.694137 | 4_2:-27281579 | Msa0596630:CDS |
| TGTGAAGAATCTGAAATGGA+CGG | 0.699523 | 4_2:-27281603 | Msa0596630:CDS |
| AAGAAGAAGAAGAATGACGG+TGG | 0.719107 | 4_2:-27281770 | Msa0596630:CDS |
| CCTCAATGGCATCAACAGTG+AGG | 0.722927 | 4_2:+27279254 | None:intergenic |
| GGAGCAGTTCAAAATCAGAG+AGG | 0.727584 | 4_2:-27279505 | Msa0596630:CDS |
| GCTGGAAGCAATGCTTGATG+TGG | 0.729343 | 4_2:-27278597 | Msa0596630:CDS |
| GATGTTGAAAGGGAATGGTG+TGG | 0.745945 | 4_2:+27282229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAAATTTAGATAC+TGG | - | chr4_2:27279146-27279165 | Msa0596630:intron | 10.0% |
| !! | TTAAATTAAATTTAGATACT+GGG | - | chr4_2:27279147-27279166 | Msa0596630:intron | 10.0% |
| !! | ACAATATTCAAATATTTCAT+TGG | + | chr4_2:27281681-27281700 | None:intergenic | 15.0% |
| !! | ATTAAAGATGAGATTAAAGA+TGG | - | chr4_2:27278711-27278730 | Msa0596630:intron | 20.0% |
| !!! | ACAAGTTGAATAAATTCTAA+AGG | + | chr4_2:27279380-27279399 | None:intergenic | 20.0% |
| !!! | CTAACTTGTAATTTTATGTT+TGG | + | chr4_2:27279745-27279764 | None:intergenic | 20.0% |
| !!! | GTCATTTATCTTTTGAAAAA+TGG | + | chr4_2:27279780-27279799 | None:intergenic | 20.0% |
| !! | ACGTTTCAACATAAATAAAT+TGG | - | chr4_2:27279798-27279817 | Msa0596630:intron | 20.0% |
| !!! | AAATAAATTGGTGTCTTATA+CGG | - | chr4_2:27279810-27279829 | Msa0596630:intron | 20.0% |
| !! | TGTAAAACAATTCAAAAGTT+TGG | + | chr4_2:27281213-27281232 | None:intergenic | 20.0% |
| !!! | AATTCCTATATTTCCTTTTT+TGG | + | chr4_2:27281649-27281668 | None:intergenic | 20.0% |
| !! | ATTTGAATATTGTTCGATAT+TGG | - | chr4_2:27281688-27281707 | Msa0596630:CDS | 20.0% |
| !! | TTTGAATATTGTTCGATATT+GGG | - | chr4_2:27281689-27281708 | Msa0596630:CDS | 20.0% |
| !!! | TTTGAGTACTTTTATATGTT+AGG | - | chr4_2:27282097-27282116 | Msa0596630:exon | 20.0% |
| !! | ACTTTGATGAATGAAAAAAA+AGG | - | chr4_2:27282166-27282185 | Msa0596630:five_prime_UTR | 20.0% |
| !! | CTTTGATGAATGAAAAAAAA+GGG | - | chr4_2:27282167-27282186 | Msa0596630:five_prime_UTR | 20.0% |
| !! | TGTTTACTAGTACTAAATAA+TGG | + | chr4_2:27282242-27282261 | None:intergenic | 20.0% |
| !! | TATTTAGTACTAGTAAACAT+TGG | - | chr4_2:27282243-27282262 | Msa0596630:five_prime_UTR | 20.0% |
| !! | GGTTTGATAGAAAGTATAAA+TGG | - | chr4_2:27278745-27278764 | Msa0596630:intron | 25.0% |
| ! | GAAAAAGAATGTGAATGAAA+AGG | - | chr4_2:27278932-27278951 | Msa0596630:intron | 25.0% |
| !!! | TAAAGTTGTTGTTTTAAGAC+AGG | - | chr4_2:27279049-27279068 | Msa0596630:intron | 25.0% |
| !! | ATTGATTTCAAGTGTATGTT+TGG | - | chr4_2:27279269-27279288 | Msa0596630:CDS | 25.0% |
| !! | TTGATTTCAAGTGTATGTTT+GGG | - | chr4_2:27279270-27279289 | Msa0596630:CDS | 25.0% |
| !! | GTGTAAAATTGATTCTAACA+TGG | - | chr4_2:27279325-27279344 | Msa0596630:CDS | 25.0% |
| !! | AAAATTGATTCTAACATGGT+TGG | - | chr4_2:27279329-27279348 | Msa0596630:CDS | 25.0% |
| !! | TCAGTTAGAATCAATTTTTG+AGG | - | chr4_2:27279632-27279651 | Msa0596630:intron | 25.0% |
| !! | TACTCTTCTCAAATCAATTT+TGG | - | chr4_2:27279702-27279721 | Msa0596630:intron | 25.0% |
| ! | ATTTGAAAACAGCTGTTATT+TGG | + | chr4_2:27279853-27279872 | None:intergenic | 25.0% |
| !!! | AGCTGTTTTCAAATTATTAC+CGG | - | chr4_2:27279859-27279878 | Msa0596630:intron | 25.0% |
| !! | TCTTCCATTTGTTAATTATG+AGG | - | chr4_2:27280021-27280040 | Msa0596630:intron | 25.0% |
| !! | CTTCCATTTGTTAATTATGA+GGG | - | chr4_2:27280022-27280041 | Msa0596630:intron | 25.0% |
| ! | AAACCCTCATAATTAACAAA+TGG | + | chr4_2:27280028-27280047 | None:intergenic | 25.0% |
| ! | AGTTGGAAACAAAAAAAGAT+AGG | - | chr4_2:27280059-27280078 | Msa0596630:intron | 25.0% |
| ! | AAAATATGACGACTTGAATT+TGG | - | chr4_2:27280118-27280137 | Msa0596630:intron | 25.0% |
| ! | TTAAATTATGAGTCACAAGT+TGG | + | chr4_2:27280241-27280260 | None:intergenic | 25.0% |
| ! | TTTAATAAGTCAGAATGAGT+AGG | - | chr4_2:27280268-27280287 | Msa0596630:intron | 25.0% |
| !!! | TAGGTATATAAGGTTTTGAA+AGG | - | chr4_2:27280287-27280306 | Msa0596630:intron | 25.0% |
| !! | GTTTTTCTTTGATTCCAAAT+TGG | + | chr4_2:27280628-27280647 | None:intergenic | 25.0% |
| ! | TATTAAGATTTAGATGCCAA+TGG | - | chr4_2:27280660-27280679 | Msa0596630:intron | 25.0% |
| ! | AAAATTTATCTCACTATGTG+AGG | + | chr4_2:27280746-27280765 | None:intergenic | 25.0% |
| ! | TATTGCAAAATCCAAGTTAA+AGG | - | chr4_2:27281050-27281069 | Msa0596630:intron | 25.0% |
| ! | ATTCAAAAGTTTGGAGAAAT+GGG | + | chr4_2:27281204-27281223 | None:intergenic | 25.0% |
| ! | AATTCAAAAGTTTGGAGAAA+TGG | + | chr4_2:27281205-27281224 | None:intergenic | 25.0% |
| ! | AACAAAATACTACCATTCAT+CGG | - | chr4_2:27281721-27281740 | Msa0596630:CDS | 25.0% |
| !! | TTTGTCTTTTGCTTAATGTT+TGG | - | chr4_2:27282142-27282161 | Msa0596630:five_prime_UTR | 25.0% |
| ! | CTTAACTTAGATTAAAACCA+TGG | + | chr4_2:27282200-27282219 | None:intergenic | 25.0% |
| !!! | CATGGTTTTAATCTAAGTTA+AGG | - | chr4_2:27282198-27282217 | Msa0596630:five_prime_UTR | 25.0% |
| !!! | GTTTTAATCTAAGTTAAGGT+AGG | - | chr4_2:27282202-27282221 | Msa0596630:five_prime_UTR | 25.0% |
| TGATGATTGTGATGTTGAAA+GGG | + | chr4_2:27278208-27278227 | None:intergenic | 30.0% | |
| ATGATGATTGTGATGTTGAA+AGG | + | chr4_2:27278209-27278228 | None:intergenic | 30.0% | |
| AGTAATGAAGAAATGTGAAG+AGG | + | chr4_2:27278406-27278425 | None:intergenic | 30.0% | |
| ATTAAAGATGGAGAGAAGAA+TGG | - | chr4_2:27278723-27278742 | Msa0596630:intron | 30.0% | |
| TTAAAGATGGAGAGAAGAAT+GGG | - | chr4_2:27278724-27278743 | Msa0596630:intron | 30.0% | |
| !! | TATACATTTGCTGTTGAAAG+TGG | - | chr4_2:27278888-27278907 | Msa0596630:intron | 30.0% |
| ACAACTTTATGATCATCATC+AGG | + | chr4_2:27279038-27279057 | None:intergenic | 30.0% | |
| GTAACGAGGATATTAATGAA+GGG | - | chr4_2:27279169-27279188 | Msa0596630:intron | 30.0% | |
| TAACGAGGATATTAATGAAG+GGG | - | chr4_2:27279170-27279189 | Msa0596630:intron | 30.0% | |
| ! | TTTACACCTCGAATCAATTT+TGG | + | chr4_2:27279312-27279331 | None:intergenic | 30.0% |
| !! | TTTGGTTCTATGACAAGATT+TGG | + | chr4_2:27279533-27279552 | None:intergenic | 30.0% |
| ! | AGAATTGACTTTGACATGTT+TGG | + | chr4_2:27279683-27279702 | None:intergenic | 30.0% |
| !! | TTTATGTTTGGTTCCACTTT+TGG | + | chr4_2:27279733-27279752 | None:intergenic | 30.0% |
| !!! | AGATTTTTAAAACCCTAGCT+AGG | - | chr4_2:27279935-27279954 | Msa0596630:intron | 30.0% |
| ATTATGAGGGTTTATGATCT+TGG | - | chr4_2:27280035-27280054 | Msa0596630:intron | 30.0% | |
| !!! | GGATAAAATGTTTTTTGCTG+TGG | - | chr4_2:27280184-27280203 | Msa0596630:intron | 30.0% |
| TCAGAATGAGTAGGTATATA+AGG | - | chr4_2:27280277-27280296 | Msa0596630:intron | 30.0% | |
| !!! | GTATATAAGGTTTTGAAAGG+TGG | - | chr4_2:27280290-27280309 | Msa0596630:intron | 30.0% |
| !! | TGTGCATTACTTTTCCTTTT+GGG | - | chr4_2:27280494-27280513 | Msa0596630:intron | 30.0% |
| AGATCCTTACAATTCCAATT+TGG | - | chr4_2:27280611-27280630 | Msa0596630:intron | 30.0% | |
| GATTCCAAATTGGAATTGTA+AGG | + | chr4_2:27280618-27280637 | None:intergenic | 30.0% | |
| ! | TAATTTTCTCAGAAAACCTC+TGG | + | chr4_2:27281140-27281159 | None:intergenic | 30.0% |
| ! | AAACTGTAGTGCAATTTTTG+TGG | - | chr4_2:27281272-27281291 | Msa0596630:intron | 30.0% |
| CTGTATTTGCTTCAAGAATT+AGG | - | chr4_2:27281430-27281449 | Msa0596630:CDS | 30.0% | |
| ACTCAAGAAATCAAACTTTG+TGG | + | chr4_2:27281510-27281529 | None:intergenic | 30.0% | |
| ! | TTGCAACAACAAAGTCTTTT+TGG | + | chr4_2:27281554-27281573 | None:intergenic | 30.0% |
| GTAGCCAAAAAAGGAAATAT+AGG | - | chr4_2:27281642-27281661 | Msa0596630:CDS | 30.0% | |
| ATGTTAGATAAACCGATGAA+TGG | + | chr4_2:27281736-27281755 | None:intergenic | 30.0% | |
| TAGATCTGCAAAGAAATCAA+TGG | - | chr4_2:27281797-27281816 | Msa0596630:CDS | 30.0% | |
| ATTGCTTTCTTAATCTCACT+GGG | + | chr4_2:27281997-27282016 | None:intergenic | 30.0% | |
| TATTGCTTTCTTAATCTCAC+TGG | + | chr4_2:27281998-27282017 | None:intergenic | 30.0% | |
| TCAAATCTTAGACTAAGATC+CGG | + | chr4_2:27282082-27282101 | None:intergenic | 30.0% | |
| GGCTTTCATATTTCATCTAA+TGG | - | chr4_2:27282118-27282137 | Msa0596630:five_prime_UTR | 30.0% | |
| ATTGTGATGTTGAAAGGGAA+TGG | + | chr4_2:27278203-27278222 | None:intergenic | 35.0% | |
| ! | TTTGGAAGAAAAGCGGTTTT+AGG | + | chr4_2:27278279-27278298 | None:intergenic | 35.0% |
| !! | AGGAGTTTTTGGAAGAAAAG+CGG | + | chr4_2:27278286-27278305 | None:intergenic | 35.0% |
| !!! | AATCGGTGTTAAGGAGTTTT+TGG | + | chr4_2:27278297-27278316 | None:intergenic | 35.0% |
| GAGAAGAAGAAGAAGAATGA+CGG | - | chr4_2:27278651-27278670 | Msa0596630:intron | 35.0% | |
| GAAAGAGAAGAAGAAATGTG+CGG | - | chr4_2:27278797-27278816 | Msa0596630:intron | 35.0% | |
| ! | TGTGAAGAATCTGAAATGGA+CGG | - | chr4_2:27278821-27278840 | Msa0596630:intron | 35.0% |
| GAATGTGAATGAAAAGGAGA+AGG | - | chr4_2:27278938-27278957 | Msa0596630:intron | 35.0% | |
| ! | GAAAGAGAAAGAAAGTGTGA+AGG | - | chr4_2:27278968-27278987 | Msa0596630:intron | 35.0% |
| AGAAAGAAGATTGCGTATTG+TGG | - | chr4_2:27279001-27279020 | Msa0596630:intron | 35.0% | |
| AATTTAGATACTGGGTAACG+AGG | - | chr4_2:27279155-27279174 | Msa0596630:intron | 35.0% | |
| GGTAACGAGGATATTAATGA+AGG | - | chr4_2:27279168-27279187 | Msa0596630:intron | 35.0% | |
| CAAAACCAAAAGACACGTTT+GGG | + | chr4_2:27279238-27279257 | None:intergenic | 35.0% | |
| ACAAAACCAAAAGACACGTT+TGG | + | chr4_2:27279239-27279258 | None:intergenic | 35.0% | |
| !!! | AAACGTGTCTTTTGGTTTTG+TGG | - | chr4_2:27279238-27279257 | Msa0596630:intron | 35.0% |
| !! | ACCTTCAACTCACTTTTAGT+CGG | - | chr4_2:27279490-27279509 | Msa0596630:CDS | 35.0% |
| !! | TTGACTCACTTTTAGACGTT+TGG | + | chr4_2:27279551-27279570 | None:intergenic | 35.0% |
| AACGTCTAAAAGTGAGTCAA+AGG | - | chr4_2:27279551-27279570 | Msa0596630:intron | 35.0% | |
| ! | TAAATTGGTGTCTTATACGG+TGG | - | chr4_2:27279813-27279832 | Msa0596630:intron | 35.0% |
| TGCTAGTATCATGTAATGTG+TGG | - | chr4_2:27279891-27279910 | Msa0596630:intron | 35.0% | |
| GCTAGTATCATGTAATGTGT+GGG | - | chr4_2:27279892-27279911 | Msa0596630:intron | 35.0% | |
| GTGTGGGTGTTTCATATATT+AGG | - | chr4_2:27279908-27279927 | Msa0596630:intron | 35.0% | |
| TAACAAATGGAAGAGTAACG+TGG | + | chr4_2:27280015-27280034 | None:intergenic | 35.0% | |
| !! | GTGTGCATTACTTTTCCTTT+TGG | - | chr4_2:27280493-27280512 | Msa0596630:intron | 35.0% |
| CCATGTAGAATTGTAACACA+CGG | + | chr4_2:27280541-27280560 | None:intergenic | 35.0% | |
| CGTGTGTTACAATTCTACAT+GGG | - | chr4_2:27280539-27280558 | Msa0596630:intron | 35.0% | |
| AGATTTAGATGCCAATGGTT+TGG | - | chr4_2:27280665-27280684 | Msa0596630:intron | 35.0% | |
| !! | ACTAACTTGCTTGATGATGA+AGG | - | chr4_2:27280879-27280898 | Msa0596630:intron | 35.0% |
| AAATCAGAGAGGCAAAAAGA+AGG | - | chr4_2:27280930-27280949 | Msa0596630:intron | 35.0% | |
| ! | AGCTCTGATTTCCTTTAACT+TGG | + | chr4_2:27281064-27281083 | None:intergenic | 35.0% |
| TTGAAGCAAATACAGACATC+TGG | + | chr4_2:27281425-27281444 | None:intergenic | 35.0% | |
| CATTCAAATTTCAAACCGAC+TGG | + | chr4_2:27281579-27281598 | None:intergenic | 35.0% | |
| TTTGCTGCATTATCATAGTG+TGG | - | chr4_2:27281620-27281639 | Msa0596630:CDS | 35.0% | |
| TGTTCATTTCCTGTTGTGTA+GGG | - | chr4_2:27281759-27281778 | Msa0596630:CDS | 35.0% | |
| ATCTGCAAAGAAATCAATGG+TGG | - | chr4_2:27281800-27281819 | Msa0596630:CDS | 35.0% | |
| CTAGCAACAAACTAAAACAG+CGG | + | chr4_2:27282059-27282078 | None:intergenic | 35.0% | |
| !!! | TGTTTTAGTTTGTTGCTAGC+CGG | - | chr4_2:27282060-27282079 | Msa0596630:CDS | 35.0% |
| !! | AGTGAGTGAAATCGGTGTTA+AGG | + | chr4_2:27278306-27278325 | None:intergenic | 40.0% |
| AGTCAGTGAGTGAGTGAAAT+CGG | + | chr4_2:27278314-27278333 | None:intergenic | 40.0% | |
| GTATCTTCTGAATCGAGACA+TGG | + | chr4_2:27278340-27278359 | None:intergenic | 40.0% | |
| GAAGAAGAGAACAAGGGTAA+TGG | + | chr4_2:27278381-27278400 | None:intergenic | 40.0% | |
| GAGGAAGAAGAAGAGAACAA+GGG | + | chr4_2:27278387-27278406 | None:intergenic | 40.0% | |
| AGAGGAAGAAGAAGAGAACA+AGG | + | chr4_2:27278388-27278407 | None:intergenic | 40.0% | |
| ! | GAAGGAAGGGAATAATGGAA+GGG | + | chr4_2:27278433-27278452 | None:intergenic | 40.0% |
| AGACATAGATCGAGATCGAA+CGG | + | chr4_2:27278477-27278496 | None:intergenic | 40.0% | |
| !! | GCTTTGAAGCAACAACAACT+CGG | - | chr4_2:27278546-27278565 | Msa0596630:CDS | 40.0% |
| AAGAAGAAGAAGAATGACGG+TGG | - | chr4_2:27278654-27278673 | Msa0596630:intron | 40.0% | |
| CGGTTGTGAAGAATCTGAAA+TGG | - | chr4_2:27278817-27278836 | Msa0596630:intron | 40.0% | |
| AAATGGACGGCTGAGATTAA+AGG | - | chr4_2:27278834-27278853 | Msa0596630:intron | 40.0% | |
| ACGGCTGAGATTAAAGGAAA+AGG | - | chr4_2:27278840-27278859 | Msa0596630:intron | 40.0% | |
| CGGCTGAGATTAAAGGAAAA+GGG | - | chr4_2:27278841-27278860 | Msa0596630:intron | 40.0% | |
| GGCTGAGATTAAAGGAAAAG+GGG | - | chr4_2:27278842-27278861 | Msa0596630:intron | 40.0% | |
| TGAGATTAAAGGAAAAGGGG+AGG | - | chr4_2:27278845-27278864 | Msa0596630:intron | 40.0% | |
| TGAACACTTAACACTGAAGG+TGG | - | chr4_2:27279193-27279212 | Msa0596630:intron | 40.0% | |
| TGTATGTTTGGGTCTACTTC+TGG | - | chr4_2:27279281-27279300 | Msa0596630:CDS | 40.0% | |
| !! | GATAGGCCAAAATTGATTCG+AGG | - | chr4_2:27279303-27279322 | Msa0596630:CDS | 40.0% |
| ! | TCCGACTAAAAGTGAGTTGA+AGG | + | chr4_2:27279494-27279513 | None:intergenic | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | - | chr4_2:27279717-27279736 | Msa0596630:intron | 40.0% |
| !! | ATGTTTGGTTCCACTTTTGG+AGG | + | chr4_2:27279730-27279749 | None:intergenic | 40.0% |
| !! | GATACTAGCATTGACAACAC+CGG | + | chr4_2:27279881-27279900 | None:intergenic | 40.0% |
| ! | TTTAAAACCCTAGCTAGGAC+AGG | - | chr4_2:27279940-27279959 | Msa0596630:intron | 40.0% |
| TTAAAACCCTAGCTAGGACA+GGG | - | chr4_2:27279941-27279960 | Msa0596630:intron | 40.0% | |
| GGGTTTATGATCTTGGAAGT+TGG | - | chr4_2:27280042-27280061 | Msa0596630:intron | 40.0% | |
| AAATATTTGCCTCCTATCCC+TGG | - | chr4_2:27280145-27280164 | Msa0596630:intron | 40.0% | |
| !!! | TTTTTTGCTGTGGCTTGATG+TGG | - | chr4_2:27280194-27280213 | Msa0596630:intron | 40.0% |
| CCGTGTGTTACAATTCTACA+TGG | - | chr4_2:27280538-27280557 | Msa0596630:intron | 40.0% | |
| !! | CATGTTGATAGCCAAACCAT+TGG | + | chr4_2:27280679-27280698 | None:intergenic | 40.0% |
| !! | TGATGAAGGCATTTGCAAAG+AGG | - | chr4_2:27280893-27280912 | Msa0596630:intron | 40.0% |
| ! | AAGGCATTTGCAAAGAGGTT+TGG | - | chr4_2:27280898-27280917 | Msa0596630:intron | 40.0% |
| ATCAAATACGCAGCATCTTG+AGG | + | chr4_2:27280964-27280983 | None:intergenic | 40.0% | |
| ACGGATCAAATACGCTCTAA+AGG | + | chr4_2:27280995-27281014 | None:intergenic | 40.0% | |
| TTAGAGCGTATTTGATCCGT+AGG | - | chr4_2:27280995-27281014 | Msa0596630:intron | 40.0% | |
| GTATTTGATCCGTAGGTCAA+AGG | - | chr4_2:27281002-27281021 | Msa0596630:intron | 40.0% | |
| CAAAAGTTTGGAGAAATGGG+AGG | + | chr4_2:27281201-27281220 | None:intergenic | 40.0% | |
| TATGATACAAGCTCTCGTCA+AGG | + | chr4_2:27281301-27281320 | None:intergenic | 40.0% | |
| AACAGTTGCAAAATCGACCT+TGG | - | chr4_2:27281390-27281409 | Msa0596630:CDS | 40.0% | |
| !! | TTTGTTGTTGCAAGACCAGT+CGG | - | chr4_2:27281561-27281580 | Msa0596630:CDS | 40.0% |
| AGCAAATTCTGAATGTCACG+TGG | + | chr4_2:27281606-27281625 | None:intergenic | 40.0% | |
| CATAGTGTGGTAGCCAAAAA+AGG | - | chr4_2:27281633-27281652 | Msa0596630:CDS | 40.0% | |
| CTGTTCATTTCCTGTTGTGT+AGG | - | chr4_2:27281758-27281777 | Msa0596630:CDS | 40.0% | |
| GAAGATCACTGTCCTTCAAA+AGG | - | chr4_2:27281868-27281887 | Msa0596630:CDS | 40.0% | |
| ! | ATCAAAGGTCCTCCTTTTGA+AGG | + | chr4_2:27281883-27281902 | None:intergenic | 40.0% |
| CAACAAACTAAAACAGCGGA+TGG | + | chr4_2:27282055-27282074 | None:intergenic | 40.0% | |
| ! | GGTTTAAAGTGTGATGGAGG+TGG | + | chr4_2:27278172-27278191 | None:intergenic | 45.0% |
| ! | TGGGGTTTAAAGTGTGATGG+AGG | + | chr4_2:27278175-27278194 | None:intergenic | 45.0% |
| ! | TGGTGGGGTTTAAAGTGTGA+TGG | + | chr4_2:27278178-27278197 | None:intergenic | 45.0% |
| TTGAAAGGGAATGGTGTGGT+GGG | + | chr4_2:27278194-27278213 | None:intergenic | 45.0% | |
| GATGTTGAAAGGGAATGGTG+TGG | + | chr4_2:27278198-27278217 | None:intergenic | 45.0% | |
| ! | GGAAGGAAGGGAATAATGGA+AGG | + | chr4_2:27278434-27278453 | None:intergenic | 45.0% |
| TCGAGGAAGGAAGGGAATAA+TGG | + | chr4_2:27278438-27278457 | None:intergenic | 45.0% | |
| GAGATTGTTCGAGGAAGGAA+GGG | + | chr4_2:27278446-27278465 | None:intergenic | 45.0% | |
| AGATCGAGATCGAACGGTAA+CGG | + | chr4_2:27278471-27278490 | None:intergenic | 45.0% | |
| AAGAAGAAGAATGACGGTGG+CGG | - | chr4_2:27278657-27278676 | Msa0596630:intron | 45.0% | |
| AAAGGAAAAGGGGAGGATAG+TGG | - | chr4_2:27278852-27278871 | Msa0596630:intron | 45.0% | |
| AAGGAAAAGGGGAGGATAGT+GGG | - | chr4_2:27278853-27278872 | Msa0596630:intron | 45.0% | |
| GGGTGAACACTTAACACTGA+AGG | - | chr4_2:27279190-27279209 | Msa0596630:intron | 45.0% | |
| CTTAACACTGAAGGTGGACA+CGG | - | chr4_2:27279199-27279218 | Msa0596630:intron | 45.0% | |
| ! | TGACACCCAAACGTGTCTTT+TGG | - | chr4_2:27279230-27279249 | Msa0596630:intron | 45.0% |
| GTTTGGGTCTACTTCTGGAT+AGG | - | chr4_2:27279286-27279305 | Msa0596630:CDS | 45.0% | |
| ACAAAACCCTGTCCTAGCTA+GGG | + | chr4_2:27279950-27279969 | None:intergenic | 45.0% | |
| GGCTCATTTCTCCCCAAATT+CGG | - | chr4_2:27280515-27280534 | Msa0596630:intron | 45.0% | |
| TGTAACACACGGCCGAATTT+GGG | + | chr4_2:27280530-27280549 | None:intergenic | 45.0% | |
| TTGTAACACACGGCCGAATT+TGG | + | chr4_2:27280531-27280550 | None:intergenic | 45.0% | |
| GGAGCAGTTCAAAATCAGAG+AGG | - | chr4_2:27280919-27280938 | Msa0596630:intron | 45.0% | |
| TGCAATAGCCAGCTCTCTAA+GGG | + | chr4_2:27281037-27281056 | None:intergenic | 45.0% | |
| TTGCAATAGCCAGCTCTCTA+AGG | + | chr4_2:27281038-27281057 | None:intergenic | 45.0% | |
| !! | AATGGGAGGTACTACCTCAA+TGG | + | chr4_2:27281187-27281206 | None:intergenic | 45.0% |
| ACATCTGGAAAGCAGTACCA+AGG | + | chr4_2:27281410-27281429 | None:intergenic | 45.0% | |
| AGATCAACTCCCTACACAAC+AGG | + | chr4_2:27281771-27281790 | None:intergenic | 45.0% | |
| ! | TGTGTAGGGAGTTGATCTGA+TGG | - | chr4_2:27281773-27281792 | Msa0596630:CDS | 45.0% |
| !! | GAAATCAATGGTGGATGAGC+TGG | - | chr4_2:27281809-27281828 | Msa0596630:CDS | 45.0% |
| GATCACTGTCCTTCAAAAGG+AGG | - | chr4_2:27281871-27281890 | Msa0596630:CDS | 45.0% | |
| AGGACCTTTGATATGCCTGA+TGG | - | chr4_2:27281891-27281910 | Msa0596630:CDS | 45.0% | |
| GACTCCATCAGGCATATCAA+AGG | + | chr4_2:27281898-27281917 | None:intergenic | 45.0% | |
| ATATGCCTGATGGAGTCATC+CGG | - | chr4_2:27281901-27281920 | Msa0596630:CDS | 45.0% | |
| ATCCGGAAGGAAATCGAAGA+AGG | - | chr4_2:27281918-27281937 | Msa0596630:CDS | 45.0% | |
| CACCTTCTTCGATTTCCTTC+CGG | + | chr4_2:27281923-27281942 | None:intergenic | 45.0% | |
| !! | TGATGAAGCTGAGAGTACCT+AGG | - | chr4_2:27281965-27281984 | Msa0596630:CDS | 45.0% |
| ATCTCACTGGGATACTTCCT+AGG | + | chr4_2:27281985-27282004 | None:intergenic | 45.0% | |
| CTAAAACAGCGGATGGAATG+CGG | + | chr4_2:27282048-27282067 | None:intergenic | 45.0% | |
| AAAAAAAGGGCTTCGTGCCA+TGG | - | chr4_2:27282180-27282199 | Msa0596630:five_prime_UTR | 45.0% | |
| TGAAAGGGAATGGTGTGGTG+GGG | + | chr4_2:27278193-27278212 | None:intergenic | 50.0% | |
| GTTGAAAGGGAATGGTGTGG+TGG | + | chr4_2:27278195-27278214 | None:intergenic | 50.0% | |
| GGAGATTGTTCGAGGAAGGA+AGG | + | chr4_2:27278447-27278466 | None:intergenic | 50.0% | |
| GTAACGGTGGAGATTGTTCG+AGG | + | chr4_2:27278455-27278474 | None:intergenic | 50.0% | |
| AGATCTGCATGGAAGGGAGA+TGG | + | chr4_2:27278504-27278523 | None:intergenic | 50.0% | |
| CGCAGTAGATCTGCATGGAA+GGG | + | chr4_2:27278510-27278529 | None:intergenic | 50.0% | |
| GTGACTCTAACTCAGCGACT+CGG | + | chr4_2:27278590-27278609 | None:intergenic | 50.0% | |
| CGATTCGAGCAGATCGTCAT+CGG | - | chr4_2:27278609-27278628 | Msa0596630:CDS | 50.0% | |
| CAGATCGTCATCGGAGGAAA+GGG | - | chr4_2:27278618-27278637 | Msa0596630:CDS | 50.0% | |
| AGATCGTCATCGGAGGAAAG+GGG | - | chr4_2:27278619-27278638 | Msa0596630:CDS | 50.0% | |
| !! | GGGAGGATAGTGGGAATGAT+AGG | - | chr4_2:27278862-27278881 | Msa0596630:intron | 50.0% |
| CACAAAACCCTGTCCTAGCT+AGG | + | chr4_2:27279951-27279970 | None:intergenic | 50.0% | |
| TATTTGCCTCCTATCCCTGG+TGG | - | chr4_2:27280148-27280167 | Msa0596630:intron | 50.0% | |
| TTTGCCATACCACCAGGGAT+AGG | + | chr4_2:27280160-27280179 | None:intergenic | 50.0% | |
| ! | CCTGTTTTGCCATACCACCA+GGG | + | chr4_2:27280165-27280184 | None:intergenic | 50.0% |
| CCTGGTGGTATGGCAAAACA+GGG | - | chr4_2:27280163-27280182 | Msa0596630:intron | 50.0% | |
| TGGGGAGAAATGAGCCCAAA+AGG | + | chr4_2:27280511-27280530 | None:intergenic | 50.0% | |
| GTAACACACGGCCGAATTTG+GGG | + | chr4_2:27280529-27280548 | None:intergenic | 50.0% | |
| CACGAAGAGCCTTTGACCTA+CGG | + | chr4_2:27281014-27281033 | None:intergenic | 50.0% | |
| CATCACTAGCTATGTGGCGT+CGG | + | chr4_2:27281107-27281126 | None:intergenic | 50.0% | |
| CCACTCCATCACTAGCTATG+TGG | + | chr4_2:27281113-27281132 | None:intergenic | 50.0% | |
| ! | CCACATAGCTAGTGATGGAG+TGG | - | chr4_2:27281110-27281129 | Msa0596630:intron | 50.0% |
| CCTCAATGGCATCAACAGTG+AGG | + | chr4_2:27281173-27281192 | None:intergenic | 50.0% | |
| CCTCACTGTTGATGCCATTG+AGG | - | chr4_2:27281170-27281189 | Msa0596630:intron | 50.0% | |
| GCTGGAAGCAATGCTTGATG+TGG | - | chr4_2:27281827-27281846 | Msa0596630:CDS | 50.0% | |
| AGTGATCTTCCAGCAGGTTG+GGG | + | chr4_2:27281858-27281877 | None:intergenic | 50.0% | |
| CAGTGATCTTCCAGCAGGTT+GGG | + | chr4_2:27281859-27281878 | None:intergenic | 50.0% | |
| ACAGTGATCTTCCAGCAGGT+TGG | + | chr4_2:27281860-27281879 | None:intergenic | 50.0% | |
| AAGGACAGTGATCTTCCAGC+AGG | + | chr4_2:27281864-27281883 | None:intergenic | 50.0% | |
| CGGTGGAGATTGTTCGAGGA+AGG | + | chr4_2:27278451-27278470 | None:intergenic | 55.0% | |
| ! | TCGAGATCGAACGGTAACGG+TGG | + | chr4_2:27278468-27278487 | None:intergenic | 55.0% |
| GCGCAGTAGATCTGCATGGA+AGG | + | chr4_2:27278511-27278530 | None:intergenic | 55.0% | |
| TCACGCGCAGTAGATCTGCA+TGG | + | chr4_2:27278515-27278534 | None:intergenic | 55.0% | |
| TTCGAGCAGATCGTCATCGG+AGG | - | chr4_2:27278612-27278631 | Msa0596630:CDS | 55.0% | |
| GCAGATCGTCATCGGAGGAA+AGG | - | chr4_2:27278617-27278636 | Msa0596630:CDS | 55.0% | |
| ! | AAGAATGACGGTGGCGGTTG+TGG | - | chr4_2:27278663-27278682 | Msa0596630:intron | 55.0% |
| ! | GTTGTGGTCGGAAGTACACG+TGG | - | chr4_2:27278679-27278698 | Msa0596630:intron | 55.0% |
| ! | TGGTCGGAAGTACACGTGGA+CGG | - | chr4_2:27278683-27278702 | Msa0596630:intron | 55.0% |
| CCCTGGTGGTATGGCAAAAC+AGG | - | chr4_2:27280162-27280181 | Msa0596630:intron | 55.0% | |
| ! | CCCTGTTTTGCCATACCACC+AGG | + | chr4_2:27280166-27280185 | None:intergenic | 55.0% |
| TCTTCGTGCCCTTAGAGAGC+TGG | - | chr4_2:27281026-27281045 | Msa0596630:intron | 55.0% | |
| ! | ACTAGCTATGTGGCGTCGGA+AGG | + | chr4_2:27281103-27281122 | None:intergenic | 55.0% |
| CGACGCCACATAGCTAGTGA+TGG | - | chr4_2:27281105-27281124 | Msa0596630:intron | 55.0% | |
| ! | GTGATGGAGTGGAACACCAG+AGG | - | chr4_2:27281121-27281140 | Msa0596630:intron | 55.0% |
| TCCTTCCGGATGACTCCATC+AGG | + | chr4_2:27281909-27281928 | None:intergenic | 55.0% | |
| AAACAGCGGATGGAATGCGG+TGG | + | chr4_2:27282045-27282064 | None:intergenic | 55.0% | |
| !! | CTCAGCGACTCGGTCACTCA+GGG | + | chr4_2:27278580-27278599 | None:intergenic | 60.0% |
| !! | ACTCAGCGACTCGGTCACTC+AGG | + | chr4_2:27278581-27278600 | None:intergenic | 60.0% |
| ! | ATGACGGTGGCGGTTGTGGT+CGG | - | chr4_2:27278667-27278686 | Msa0596630:intron | 60.0% |
| GCCTCCTATCCCTGGTGGTA+TGG | - | chr4_2:27280153-27280172 | Msa0596630:intron | 60.0% | |
| GCCATACCACCAGGGATAGG+AGG | + | chr4_2:27280157-27280176 | None:intergenic | 60.0% | |
| GTGGTAGATCCCCAACCTGC+TGG | - | chr4_2:27281846-27281865 | Msa0596630:CDS | 60.0% | |
| GCCTGATGGAGTCATCCGGA+AGG | - | chr4_2:27281905-27281924 | Msa0596630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 27278155 | 27282291 | 27278155 | ID=Msa0596630;Name=Msa0596630 |
| chr4_2 | mRNA | 27278155 | 27282291 | 27278155 | ID=Msa0596630-mRNA-1;Parent=Msa0596630;Name=Msa0596630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=184|1|1|1|1|1|3|305|409 |
| chr4_2 | exon | 27278155 | 27278666 | 27278155 | ID=Msa0596630-mRNA-1:exon:7202;Parent=Msa0596630-mRNA-1 |
| chr4_2 | exon | 27279255 | 27279545 | 27279255 | ID=Msa0596630-mRNA-1:exon:7201;Parent=Msa0596630-mRNA-1 |
| chr4_2 | exon | 27281376 | 27282291 | 27281376 | ID=Msa0596630-mRNA-1:exon:7200;Parent=Msa0596630-mRNA-1 |
| chr4_2 | five_prime_UTR | 27282108 | 27282291 | 27282108 | ID=Msa0596630-mRNA-1:five_prime_utr;Parent=Msa0596630-mRNA-1 |
| chr4_2 | CDS | 27281376 | 27282107 | 27281376 | ID=Msa0596630-mRNA-1:cds;Parent=Msa0596630-mRNA-1 |
| chr4_2 | CDS | 27279255 | 27279545 | 27279255 | ID=Msa0596630-mRNA-1:cds;Parent=Msa0596630-mRNA-1 |
| chr4_2 | CDS | 27278460 | 27278666 | 27278460 | ID=Msa0596630-mRNA-1:cds;Parent=Msa0596630-mRNA-1 |
| chr4_2 | three_prime_UTR | 27278155 | 27278459 | 27278155 | ID=Msa0596630-mRNA-1:three_prime_utr;Parent=Msa0596630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
