AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1155990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155990 MtrunA17_Chr7g0248451 96.406 473 17 0 6 478 11 483 0.0 935
Msa1155990 MtrunA17_Chr8g0348491 79.104 469 98 0 6 474 11 479 0.0 778
Msa1155990 MtrunA17_Chr8g0387391 74.000 450 117 0 27 476 21 470 0.0 726
Msa1155990 MtrunA17_Chr1g0202641 65.152 462 156 2 12 472 16 473 0.0 652
Msa1155990 MtrunA17_Chr1g0202641 64.502 462 160 3 12 472 516 974 0.0 645
Msa1155990 MtrunA17_Chr1g0202651 65.848 448 148 2 26 472 30 473 0.0 629
Msa1155990 MtrunA17_Chr1g0202621 61.720 465 167 3 9 472 6 460 0.0 617
Msa1155990 MtrunA17_Chr7g0255311 62.716 464 158 4 11 471 32 483 0.0 614
Msa1155990 MtrunA17_Chr7g0270821 50.901 444 206 3 11 453 12 444 3.78e-162 467
Msa1155990 MtrunA17_Chr1g0193961 52.567 409 189 3 46 453 39 443 2.15e-159 460
Msa1155990 MtrunA17_Chr3g0095221 47.178 443 229 3 12 453 9 447 5.67e-142 415
Msa1155990 MtrunA17_Chr4g0067811 48.985 394 200 1 46 439 36 428 6.02e-141 412
Msa1155990 MtrunA17_Chr2g0295241 46.851 397 210 1 46 442 33 428 6.08e-139 407
Msa1155990 MtrunA17_Chr4g0070281 47.631 401 207 3 44 442 69 468 1.70e-135 400
Msa1155990 MtrunA17_Chr3g0130251 44.494 445 240 3 6 446 29 470 9.59e-134 394
Msa1155990 MtrunA17_Chr2g0301091 44.595 444 239 5 8 446 15 456 9.86e-132 389
Msa1155990 MtrunA17_Chr5g0442221 48.910 413 200 5 46 453 40 446 1.72e-129 383
Msa1155990 MtrunA17_Chr2g0319881 58.865 141 58 0 46 186 39 179 6.10e-55 181
Msa1155990 MtrunA17_Chr6g0468871 70.130 77 23 0 243 319 22 98 2.14e-33 121
Msa1155990 MtrunA17_Chr5g0418411 30.476 315 181 11 55 361 34 318 5.89e-30 120
Msa1155990 MtrunA17_Chr3g0121881 25.934 455 256 20 9 439 1 398 3.45e-26 110
Msa1155990 MtrunA17_Chr2g0303941 26.173 405 248 13 47 439 25 390 3.45e-26 109
Msa1155990 MtrunA17_Chr3g0121891 25.693 397 247 12 55 439 34 394 9.53e-26 108
Msa1155990 MtrunA17_Chr6g0449961 24.664 446 280 14 16 451 17 416 4.42e-23 101
Msa1155990 MtrunA17_Chr4g0043661 23.810 399 258 12 51 436 24 389 4.36e-22 98.2
Msa1155990 MtrunA17_Chr1g0173451 25.436 287 191 7 163 444 172 440 2.26e-21 96.7
Msa1155990 MtrunA17_Chr5g0413141 26.282 312 187 10 52 350 61 342 2.48e-21 96.3
Msa1155990 MtrunA17_Chr8g0365901 25.135 370 238 10 51 411 66 405 1.14e-20 94.4
Msa1155990 MtrunA17_Chr2g0332971 26.899 316 184 13 51 350 29 313 1.46e-19 90.5
Msa1155990 MtrunA17_Chr6g0468861 55.224 67 30 0 345 411 3 69 1.61e-19 82.8
Msa1155990 MtrunA17_Chr7g0230891 23.297 455 277 16 1 439 1 399 3.40e-19 89.4
Msa1155990 MtrunA17_Chr1g0150291 24.041 391 254 10 55 437 50 405 3.47e-19 89.7
Msa1155990 MtrunA17_Chr4g0043431 24.812 399 255 14 51 439 36 399 4.17e-19 89.4
Msa1155990 MtrunA17_Chr3g0100091 30.457 197 120 4 151 345 75 256 5.25e-19 88.2
Msa1155990 MtrunA17_Chr2g0332801 25.413 303 204 7 145 439 140 428 9.51e-19 88.6
Msa1155990 MtrunA17_Chr8g0337571 25.688 436 263 17 13 439 4 387 1.22e-18 87.8
Msa1155990 MtrunA17_Chr4g0067631 25.307 407 245 16 51 438 53 419 7.27e-18 85.5
Msa1155990 MtrunA17_Chr8g0336481 27.391 230 137 6 163 388 51 254 1.06e-17 83.2
Msa1155990 MtrunA17_Chr8g0348981 23.500 400 262 9 51 438 28 395 3.06e-17 83.6
Msa1155990 MtrunA17_Chr2g0291841 24.309 362 233 10 85 437 29 358 6.75e-17 82.0
Msa1155990 MtrunA17_Chr7g0258111 26.045 311 187 8 51 347 49 330 7.40e-17 82.8
Msa1155990 MtrunA17_Chr7g0270361 25.649 308 189 10 55 349 72 352 1.29e-16 82.0
Msa1155990 MtrunA17_Chr3g0089021 21.806 454 305 12 5 439 14 436 2.35e-16 81.3
Msa1155990 MtrunA17_Chr1g0194231 26.537 309 186 11 55 349 86 367 1.04e-15 79.3
Msa1155990 MtrunA17_Chr4g0052621 23.317 416 273 13 52 451 67 452 1.06e-15 79.3
Msa1155990 MtrunA17_Chr1g0150301 23.785 391 263 10 51 437 28 387 1.56e-15 78.2
Msa1155990 MtrunA17_Chr8g0337581 30.412 194 116 5 155 345 121 298 3.73e-15 77.0
Msa1155990 MtrunA17_Chr8g0365891 20.930 430 269 13 51 442 108 504 5.95e-15 77.0
Msa1155990 MtrunA17_Chr1g0195221 24.528 371 236 11 52 411 37 374 8.89e-15 76.3
Msa1155990 MtrunA17_Chr4g0018151 28.175 252 159 8 196 439 202 439 1.12e-14 75.9
Msa1155990 MtrunA17_Chr4g0020771 24.809 262 169 6 163 411 168 414 2.42e-14 75.1
Msa1155990 MtrunA17_Chr8g0337601 26.939 245 159 6 195 436 8 235 1.88e-13 70.1
Msa1155990 MtrunA17_Chr7g0257721 25.466 322 190 13 19 327 46 330 5.10e-13 70.1
Msa1155990 MtrunA17_Chr2g0307811 25.899 278 161 11 85 348 56 302 6.34e-13 70.5
Msa1155990 MtrunA17_Chr1g0149241 21.465 396 245 10 51 442 29 362 2.02e-12 68.6
Msa1155990 MtrunA17_Chr2g0293681 23.171 410 239 13 55 450 72 419 2.15e-12 68.9
Msa1155990 MtrunA17_Chr2g0307831 24.476 429 254 20 33 436 6 389 6.25e-12 67.4
Msa1155990 MtrunA17_Chr2g0307821 24.476 429 254 20 33 436 6 389 6.25e-12 67.4
Msa1155990 MtrunA17_Chr7g0257701 27.179 195 117 6 157 345 191 366 6.37e-12 67.4
Msa1155990 MtrunA17_Chr7g0228411 22.151 465 278 18 8 436 9 425 6.37e-12 67.4
Msa1155990 MtrunA17_Chr2g0319871 44.444 63 35 0 192 254 1 63 1.53e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155990 AT3G61490.4 68.894 479 140 2 5 474 110 588 0.0 717
Msa1155990 AT3G61490.5 68.894 479 140 2 5 474 12 490 0.0 714
Msa1155990 AT3G61490.2 71.429 455 124 1 26 474 21 475 0.0 712
Msa1155990 AT3G61490.3 71.429 455 124 1 26 474 21 475 0.0 712
Msa1155990 AT3G61490.1 71.429 455 124 1 26 474 21 475 0.0 712
Msa1155990 AT4G23500.1 67.347 441 143 1 38 478 56 495 0.0 643
Msa1155990 AT3G48950.1 63.100 458 167 2 15 470 10 467 0.0 634
Msa1155990 AT2G23900.1 58.849 469 188 4 6 471 10 476 0.0 590
Msa1155990 AT3G62110.1 49.165 419 207 2 46 458 39 457 1.24e-156 453
Msa1155990 AT3G62110.2 49.165 419 207 2 46 458 39 457 1.24e-156 453
Msa1155990 AT4G23820.1 47.682 453 228 3 3 455 1 444 1.55e-147 429
Msa1155990 AT4G33440.1 50.000 406 198 3 51 455 73 474 4.38e-135 398
Msa1155990 AT5G41870.1 46.374 455 232 7 3 454 1 446 2.49e-132 390
Msa1155990 AT3G16850.1 45.750 400 214 1 43 442 33 429 1.63e-127 378
Msa1155990 AT3G42950.1 46.447 394 208 3 51 442 67 459 1.84e-125 374
Msa1155990 AT5G49215.2 45.316 395 215 1 46 439 37 431 4.49e-125 372
Msa1155990 AT5G49215.1 45.316 395 215 1 46 439 39 433 4.68e-125 372
Msa1155990 AT3G06770.5 43.187 433 243 2 7 439 3 432 1.01e-124 371
Msa1155990 AT3G06770.2 42.890 429 244 1 11 439 4 431 4.06e-124 369
Msa1155990 AT1G19170.1 43.878 392 216 4 52 440 89 479 4.44e-120 361
Msa1155990 AT3G06770.1 44.110 365 203 1 78 442 2 365 8.19e-109 328
Msa1155990 AT3G06770.3 44.110 365 203 1 78 442 2 365 8.19e-109 328
Msa1155990 AT3G06770.4 40.698 344 198 2 101 439 2 344 1.02e-88 275
Msa1155990 AT5G17200.1 30.178 338 191 11 11 345 8 303 2.19e-31 125
Msa1155990 AT3G15720.1 28.485 330 187 10 29 349 3 292 5.10e-25 107
Msa1155990 AT3G15720.3 28.485 330 187 10 29 349 2 291 6.04e-25 107
Msa1155990 AT2G41850.1 27.073 410 236 15 49 440 67 431 1.02e-23 103
Msa1155990 AT3G15720.2 28.485 330 184 11 29 349 2 288 4.30e-23 102
Msa1155990 AT5G14650.1 24.631 406 266 12 51 448 52 425 8.35e-23 100
Msa1155990 AT1G23460.2 25.879 398 252 13 55 442 48 412 2.55e-22 99.8
Msa1155990 AT3G57510.1 23.866 419 242 12 46 439 64 430 2.87e-22 99.4
Msa1155990 AT1G23460.1 25.879 398 252 13 55 442 72 436 3.00e-22 99.8
Msa1155990 AT1G70500.1 24.598 435 282 13 39 463 60 458 3.88e-21 96.3
Msa1155990 AT3G57790.2 26.603 312 190 7 51 347 36 323 4.98e-21 96.3
Msa1155990 AT3G57790.1 26.603 312 190 7 51 347 36 323 4.98e-21 96.3
Msa1155990 AT3G15720.4 30.244 205 123 5 147 349 42 228 6.30e-21 95.1
Msa1155990 AT5G44840.1 27.729 339 199 14 54 382 28 330 1.23e-20 94.0
Msa1155990 AT3G26610.1 23.913 368 238 11 55 411 72 408 1.48e-20 94.7
Msa1155990 AT1G10640.1 23.218 435 266 14 51 449 120 522 2.71e-20 94.4
Msa1155990 AT2G43870.1 25.495 404 258 11 44 439 15 383 2.93e-20 92.8
Msa1155990 AT3G07970.1 24.917 301 208 6 145 439 150 438 5.37e-20 92.8
Msa1155990 AT4G35670.1 26.861 309 181 12 51 349 25 298 3.27e-19 89.7
Msa1155990 AT2G43880.2 27.597 308 182 10 49 349 30 303 1.14e-18 87.4
Msa1155990 AT5G27530.1 25.253 297 175 10 55 345 58 313 1.28e-18 88.6
Msa1155990 AT1G60590.1 22.072 444 269 14 51 452 124 532 2.00e-18 88.6
Msa1155990 AT2G43880.1 24.433 397 256 12 49 437 30 390 2.18e-18 87.4
Msa1155990 AT4G32380.1 29.907 214 128 6 153 362 118 313 3.26e-18 87.4
Msa1155990 AT5G44830.1 27.232 224 132 6 163 382 75 271 4.67e-18 85.5
Msa1155990 AT4G35670.2 30.693 202 117 7 153 349 8 191 7.29e-18 84.3
Msa1155990 AT1G56710.1 22.438 361 227 9 3 349 13 334 1.55e-17 85.1
Msa1155990 AT1G43090.1 29.032 279 161 10 55 327 36 283 5.07e-17 83.6
Msa1155990 AT1G78400.1 23.618 398 256 11 55 439 40 402 5.19e-17 83.2
Msa1155990 AT1G02460.1 24.679 312 191 8 55 349 94 378 6.38e-17 83.6
Msa1155990 AT1G43100.1 29.537 281 157 12 55 327 36 283 7.34e-17 83.2
Msa1155990 AT1G48100.1 22.912 419 263 13 52 447 82 463 1.21e-16 82.8
Msa1155990 AT4G32380.2 30.093 216 128 7 153 363 118 315 1.30e-16 82.0
Msa1155990 AT2G26620.1 28.623 276 164 8 56 327 37 283 1.95e-16 81.6
Msa1155990 AT2G15460.1 29.856 278 158 10 56 327 37 283 1.99e-16 81.6
Msa1155990 AT1G02790.1 25.776 322 190 13 52 362 54 337 1.99e-16 81.6
Msa1155990 AT1G65570.1 24.265 408 251 15 49 439 30 396 2.07e-16 81.3
Msa1155990 AT1G43080.1 24.874 398 255 15 55 439 36 402 2.51e-16 81.3
Msa1155990 AT2G43860.1 24.427 393 256 15 55 439 38 397 2.71e-16 81.3
Msa1155990 AT5G14650.2 27.305 282 170 12 51 327 52 303 3.42e-16 79.7
Msa1155990 AT1G80170.1 22.727 396 267 11 54 439 57 423 6.16e-16 80.5
Msa1155990 AT3G59850.1 25.867 375 234 11 47 411 20 360 8.68e-16 79.3
Msa1155990 AT3G59850.2 25.867 375 234 11 47 411 64 404 9.57e-16 79.7
Msa1155990 AT2G15470.1 30.466 279 155 13 56 327 37 283 1.29e-15 79.0
Msa1155990 AT4G13760.1 28.058 278 163 10 56 327 37 283 1.42e-15 79.0
Msa1155990 AT2G15450.1 29.137 278 160 10 56 327 37 283 1.47e-15 79.0
Msa1155990 AT4G32375.1 27.778 216 138 6 145 358 11 210 1.80e-15 79.0
Msa1155990 AT4G01890.1 25.962 312 187 11 55 349 70 354 2.52e-15 78.6
Msa1155990 AT2G43890.1 22.581 279 199 6 163 437 123 388 6.32e-15 77.0
Msa1155990 AT1G17150.1 23.192 401 254 12 55 439 38 400 1.19e-14 76.3
Msa1155990 AT1G80140.1 29.924 264 134 13 89 338 6 232 5.61e-14 73.6
Msa1155990 AT2G40310.1 28.276 290 167 12 46 327 27 283 1.30e-13 72.8
Msa1155990 AT5G48140.1 24.783 230 148 6 163 382 113 327 2.31e-13 72.0
Msa1155990 AT1G80170.2 24.382 283 175 10 54 327 57 309 7.94e-13 69.7
Msa1155990 AT1G05650.1 21.961 255 180 7 163 411 122 363 6.54e-12 67.8
Msa1155990 AT3G07820.1 26.471 272 165 11 71 327 19 270 8.00e-12 67.4
Msa1155990 AT4G32370.1 26.496 234 155 6 145 374 119 339 1.53e-11 66.2
Msa1155990 AT1G05660.1 21.961 255 180 7 163 411 122 363 1.60e-11 66.2
Msa1155990 AT5G39910.1 28.488 172 106 4 185 352 145 303 2.56e-11 65.5
Msa1155990 AT3G14040.1 22.295 305 215 8 152 447 154 445 5.82e-11 64.7

Find 105 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTACTCTCAGCTCTTTC+TGG 0.103596 7_4:-44163722 None:intergenic
GCAATACAAATTCCCTTAAA+AGG 0.142744 7_4:-44166988 None:intergenic
AGTGCTTCATTGACAGATTT+TGG 0.197810 7_4:+44163800 Msa1155990:CDS
GAGTTTACCTATTGATAATT+TGG 0.201553 7_4:+44167164 Msa1155990:CDS
TAGTCACTTTACTCTCTATT+TGG 0.208391 7_4:+44163961 Msa1155990:CDS
GAAGACTGCTACATAGTTTC+TGG 0.221963 7_4:+44166538 Msa1155990:CDS
AGATTCAGAAGCTTCATATT+TGG 0.225619 7_4:+44165211 Msa1155990:CDS
TACTAGTTTATGGAACTTAA+TGG 0.252132 7_4:+44167284 Msa1155990:three_prime_UTR
GCAATCTCAGGCAAAGCATT+AGG 0.278588 7_4:-44166892 None:intergenic
GATGAGTATGGCATCAAATT+TGG 0.279744 7_4:+44166592 Msa1155990:CDS
TAGATGGTCAAGGTGCATTT+TGG 0.290178 7_4:+44165982 Msa1155990:CDS
CATTCCATGATGGGGAATTA+AGG 0.295292 7_4:-44166100 None:intergenic
AAATGCACCTTGACCATCTA+TGG 0.318934 7_4:-44165979 None:intergenic
TGTATGTTCCAGCAGGAAAA+TGG 0.341261 7_4:+44163915 Msa1155990:CDS
TTAAGCTCCAAATTATCAAT+AGG 0.350545 7_4:-44167171 None:intergenic
AACATAAGTTCAATCAAGTA+TGG 0.351704 7_4:-44166044 None:intergenic
TGCTGTTCTCCTTGCTTCTC+AGG 0.364969 7_4:+44163991 Msa1155990:CDS
TGTGATCTGTTGCCTGATCA+AGG 0.381355 7_4:+44167105 Msa1155990:CDS
CAATCTCAGGCAAAGCATTA+GGG 0.397084 7_4:-44166891 None:intergenic
ACAGCCATTCGAACAGAATC+AGG 0.401749 7_4:+44166733 Msa1155990:CDS
TTACCATGCATACTATGAAA+TGG 0.406911 7_4:+44166818 Msa1155990:CDS
ATGTAATGTAGTTACTGTTA+AGG 0.408424 7_4:+44167217 Msa1155990:exon
GATCAAGGGCCTGAGAAAAT+CGG 0.410347 7_4:+44167120 Msa1155990:CDS
GGAGAGTTAGATTTGAGACT+TGG 0.415256 7_4:-44166079 None:intergenic
ATCAAGGGCCTGAGAAAATC+GGG 0.416111 7_4:+44167121 Msa1155990:CDS
CAATACAAATTCCCTTAAAA+GGG 0.421496 7_4:-44166987 None:intergenic
TGCTCTCTTTGTGGTGACAC+TGG 0.434597 7_4:+44163694 Msa1155990:CDS
TAGTGGTACCTGCTGTAAAC+AGG 0.438108 7_4:-44166128 None:intergenic
ATTAGTCACCTAAGTCAGTA+TGG 0.440976 7_4:+44163872 Msa1155990:CDS
TCAATAGGTAAACTCTCTGC+TGG 0.453641 7_4:-44167156 None:intergenic
AAGAGTGGATGGGATGAGTA+TGG 0.455331 7_4:+44166580 Msa1155990:CDS
GACACTAGGGATGGCTGTTA+AGG 0.457483 7_4:+44167017 Msa1155990:CDS
ACCATAGCAGCTAGGTTTCA+AGG 0.460046 7_4:+44166952 Msa1155990:CDS
AAGACTGCTACATAGTTTCT+GGG 0.462202 7_4:+44166539 Msa1155990:CDS
GGGGAAAATGGCACCATAGA+TGG 0.463012 7_4:+44165966 Msa1155990:intron
TAGTTGATATTTGCAATCTC+AGG 0.469997 7_4:-44166904 None:intergenic
TACCATGCATACTATGAAAT+GGG 0.473494 7_4:+44166819 Msa1155990:CDS
TCGAATGGCTGTGATGTCTT+CGG 0.474760 7_4:-44166722 None:intergenic
GGGTTGATACCATCAGTGTT+AGG 0.479630 7_4:-44166280 None:intergenic
TGTATTGCAAACGTGACACT+AGG 0.504435 7_4:+44167003 Msa1155990:CDS
TTCAGTGCAACCATTGCCTT+AGG 0.506121 7_4:+44166664 Msa1155990:CDS
CTCTCCTTAATTCCCCATCA+TGG 0.508913 7_4:+44166096 Msa1155990:CDS
TCCTTGAAACCTAGCTGCTA+TGG 0.510139 7_4:-44166953 None:intergenic
CCTCTACCGTATGATGGTAA+TGG 0.510333 7_4:-44165169 None:intergenic
CAGGATGAACATTCCATGAT+GGG 0.511992 7_4:-44166109 None:intergenic
ATCAAAACAGCTGTTGGTAG+AGG 0.513531 7_4:+44166763 Msa1155990:CDS
CTTGAGAACCATACTGACTT+AGG 0.516248 7_4:-44163880 None:intergenic
TCCTGACATCTCACTTCCTA+AGG 0.516582 7_4:-44166680 None:intergenic
GACACCTGATTCTGTTCGAA+TGG 0.523626 7_4:-44166737 None:intergenic
GATGGTAATGGTTCAAGCGC+AGG 0.530658 7_4:-44165157 None:intergenic
TGGACATGCACTGATATTGA+AGG 0.532216 7_4:+44167054 Msa1155990:CDS
TGGAAATACATCTAATACAA+AGG 0.532307 7_4:+44163835 Msa1155990:CDS
TCTCTTCCTCTACCGTATGA+TGG 0.537275 7_4:-44165175 None:intergenic
GCCTTAGGAAGTGAGATGTC+AGG 0.537657 7_4:+44166679 Msa1155990:CDS
AAGCTTCTGAATCTTCCTGC+TGG 0.539199 7_4:-44165202 None:intergenic
ACAGGATGAACATTCCATGA+TGG 0.539320 7_4:-44166110 None:intergenic
GTGATCTGTTGCCTGATCAA+GGG 0.542192 7_4:+44167106 Msa1155990:CDS
AGAGGAAGAGATGCACCAGC+AGG 0.542607 7_4:+44165187 Msa1155990:CDS
CTCACGGATGTTATTGTCAC+AGG 0.543826 7_4:+44165241 Msa1155990:CDS
GTGTTGCTGTGAAGAGTGGA+TGG 0.544315 7_4:+44166569 Msa1155990:CDS
TGCCCATTTCATAGTATGCA+TGG 0.547287 7_4:-44166821 None:intergenic
CCAGCAGGAAAATGGCTCAC+TGG 0.548013 7_4:+44163923 Msa1155990:CDS
ATGTTCATCCTGTTTACAGC+AGG 0.549806 7_4:+44166120 Msa1155990:CDS
AAAACAGCTGTTGGTAGAGG+AGG 0.553170 7_4:+44166766 Msa1155990:CDS
CTAAGTCAGTATGGTTCTCA+AGG 0.555173 7_4:+44163881 Msa1155990:CDS
ATCTCATCTCCTAACACTGA+TGG 0.557144 7_4:+44166271 Msa1155990:CDS
AAGGCAATGGTTGCACTGAA+TGG 0.560248 7_4:-44166661 None:intergenic
TCTCAGCTGTATGTTCCAGC+AGG 0.565650 7_4:+44163908 Msa1155990:CDS
AAATGGGCATTTAAGATGAC+TGG 0.567772 7_4:+44166835 Msa1155990:CDS
AGTATGGCATCAAATTTGGC+AGG 0.573064 7_4:+44166596 Msa1155990:CDS
GACTGTGTTGCTGTGAAGAG+TGG 0.579759 7_4:+44166565 Msa1155990:CDS
TCAGTGTTAGGAGATGAGAT+AGG 0.579789 7_4:-44166268 None:intergenic
GTCAGAATCAAAACAGCTGT+TGG 0.583176 7_4:+44166757 Msa1155990:CDS
CAATAGGTAAACTCTCTGCT+GGG 0.588902 7_4:-44167155 None:intergenic
CCATTACCATCATACGGTAG+AGG 0.588919 7_4:+44165169 Msa1155990:CDS
CATCTCACTTCCTAAGGCAA+TGG 0.591067 7_4:-44166674 None:intergenic
CTTGAACCATTACCATCATA+CGG 0.596573 7_4:+44165163 Msa1155990:CDS
TGGCTGTTAAGGCCAAGAAA+AGG 0.599659 7_4:+44167028 Msa1155990:CDS
ACTCTCTGCTGGGAAATCAC+AGG 0.604357 7_4:-44167145 None:intergenic
ACAACTTCATTTGAGTACAA+TGG 0.606953 7_4:+44163758 Msa1155990:CDS
GGCAACAGATCACAAGGCGG+AGG 0.607948 7_4:-44167096 None:intergenic
TACAGCAACATTATTATACA+AGG 0.609021 7_4:+44166229 Msa1155990:intron
TTAAGGCCAAGAAAAGGTCA+TGG 0.613134 7_4:+44167034 Msa1155990:CDS
AAACAGCTGTTGGTAGAGGA+GGG 0.626382 7_4:+44166767 Msa1155990:CDS
AGAATGTTACCATAGCAGCT+AGG 0.630037 7_4:+44166944 Msa1155990:CDS
AATGAGATACCTGAGAAGCA+AGG 0.630823 7_4:-44164000 None:intergenic
GTATTGCAAACGTGACACTA+GGG 0.632461 7_4:+44167004 Msa1155990:CDS
TGCAAACGTGACACTAGGGA+TGG 0.639488 7_4:+44167008 Msa1155990:CDS
TATCAACTATAGAGATGTCG+TGG 0.647148 7_4:+44166918 Msa1155990:CDS
TGATCAGGCAACAGATCACA+AGG 0.647899 7_4:-44167102 None:intergenic
AATGGCACCATAGATGGTCA+AGG 0.649066 7_4:+44165972 Msa1155990:CDS
TTAGGAAGTGAGATGTCAGG+AGG 0.656161 7_4:+44166682 Msa1155990:CDS
CATATTTGGAACAAACCTCA+CGG 0.657666 7_4:+44165225 Msa1155990:CDS
AACACTGATGGTATCAACCC+AGG 0.663362 7_4:+44166283 Msa1155990:CDS
AGGATGAACATTCCATGATG+GGG 0.669694 7_4:-44166108 None:intergenic
AGTCAGTATGGTTCTCAAGG+TGG 0.672780 7_4:+44163884 Msa1155990:CDS
AGACTGCTACATAGTTTCTG+GGG 0.678381 7_4:+44166540 Msa1155990:CDS
TCAAGGGCCTGAGAAAATCG+GGG 0.683370 7_4:+44167122 Msa1155990:CDS
GGACATGCACTGATATTGAA+GGG 0.687510 7_4:+44167055 Msa1155990:CDS
TGGTAGAGGAGGGTATGTGA+AGG 0.693483 7_4:+44166777 Msa1155990:CDS
TAGGAAGTGAGATGTCAGGA+GGG 0.694750 7_4:+44166683 Msa1155990:CDS
TGTTGCTGTGAAGAGTGGAT+GGG 0.695217 7_4:+44166570 Msa1155990:CDS
TAATGTAGGATATCACTGAG+TGG 0.726207 7_4:+44165134 Msa1155990:intron
CTGTGACAATAACATCCGTG+AGG 0.748176 7_4:-44165240 None:intergenic
TCAGGCAACAGATCACAAGG+CGG 0.811321 7_4:-44167099 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTATCAAACATTTT+AGG + chr7_4:44164327-44164346 Msa1155990:intron 10.0%
!! TTGTATTAATAAAATAATGT+AGG + chr7_4:44165120-44165139 Msa1155990:intron 10.0%
!! AATGTTTGATAAAAAATTGT+GGG - chr7_4:44164325-44164344 None:intergenic 15.0%
!! AAATGTTTGATAAAAAATTG+TGG - chr7_4:44164326-44164345 None:intergenic 15.0%
!!! TTTTCTTGATATTCTTAAAT+TGG - chr7_4:44164745-44164764 None:intergenic 15.0%
!!! GTTAATCATACATTTTTATT+GGG - chr7_4:44166341-44166360 None:intergenic 15.0%
!!! CATTAATTTTTACTCCATTT+TGG + chr7_4:44164019-44164038 Msa1155990:intron 20.0%
!! ATGTTTGATAAAAAATTGTG+GGG - chr7_4:44164324-44164343 None:intergenic 20.0%
!!! TTTTTTTTGTTAAAACTCTC+CGG + chr7_4:44164394-44164413 Msa1155990:intron 20.0%
!! AGTTGGAAGAAAATTAAAAA+CGG - chr7_4:44164585-44164604 None:intergenic 20.0%
!! TATACACACTATAATTTAGT+TGG - chr7_4:44164602-44164621 None:intergenic 20.0%
!! AATTATAGTGTGTATATGTT+TGG + chr7_4:44164606-44164625 Msa1155990:intron 20.0%
!! AAGAATATCAAGAAAATAGA+TGG + chr7_4:44164749-44164768 Msa1155990:intron 20.0%
!! ATAGCAAAAGACAAATTTAA+CGG - chr7_4:44165006-44165025 None:intergenic 20.0%
!!! GATTTTGAGAAAATTAGTTA+TGG + chr7_4:44165391-44165410 Msa1155990:intron 20.0%
!!! GATTTTGAACAATTAGTTTA+AGG + chr7_4:44165468-44165487 Msa1155990:intron 20.0%
!!! TATAATGGCAAATTGTATTT+TGG - chr7_4:44165715-44165734 None:intergenic 20.0%
!!! TGCCATTATAGATAAATTTT+AGG + chr7_4:44165725-44165744 Msa1155990:intron 20.0%
!!! GCCATTATAGATAAATTTTA+GGG + chr7_4:44165726-44165745 Msa1155990:intron 20.0%
!! ACCCTAAAATTTATCTATAA+TGG - chr7_4:44165730-44165749 None:intergenic 20.0%
!!! TAAGAAAAAACTTCTACTTT+TGG + chr7_4:44165866-44165885 Msa1155990:intron 20.0%
!!! CACAGTTGATATTAAAATTT+AGG - chr7_4:44165931-44165950 None:intergenic 20.0%
!!! CGTTAATCATACATTTTTAT+TGG - chr7_4:44166342-44166361 None:intergenic 20.0%
!! AATAATTTTTGCTCTCTTTG+TGG + chr7_4:44163685-44163704 Msa1155990:CDS 25.0%
! TGGAAATACATCTAATACAA+AGG + chr7_4:44163835-44163854 Msa1155990:CDS 25.0%
! TAGTTAATTAGTCACCAAAA+TGG - chr7_4:44164036-44164055 None:intergenic 25.0%
!! GCTTTTAACATAACAAGTTA+TGG - chr7_4:44164282-44164301 None:intergenic 25.0%
! TTCCTCATGAAAATTTACTA+TGG + chr7_4:44164417-44164436 Msa1155990:intron 25.0%
!! TACCATAGTAAATTTTCATG+AGG - chr7_4:44164422-44164441 None:intergenic 25.0%
! ATTTACCTTTAGCTGAATTT+CGG - chr7_4:44164447-44164466 None:intergenic 25.0%
! TCAAGTGATTAATGAATTCA+CGG + chr7_4:44164703-44164722 Msa1155990:intron 25.0%
! AAGAAAATAGATGGTTATAG+AGG + chr7_4:44164758-44164777 Msa1155990:intron 25.0%
! AGAAAATAGATGGTTATAGA+GGG + chr7_4:44164759-44164778 Msa1155990:intron 25.0%
!! TTTTTGTGAATCAAAGGTTT+AGG - chr7_4:44164915-44164934 None:intergenic 25.0%
!!! AAGTTGTTTTTGTGAATCAA+AGG - chr7_4:44164921-44164940 None:intergenic 25.0%
!!! GAATAGGCTATGTTTTTTTT+TGG - chr7_4:44165350-44165369 None:intergenic 25.0%
! TGAGTTAAGTTTATTGATGT+CGG - chr7_4:44165523-44165542 None:intergenic 25.0%
! AACATAAGTTCAATCAAGTA+TGG - chr7_4:44166047-44166066 None:intergenic 25.0%
!! CAGTCTTTAAAAGTAAAAGA+GGG - chr7_4:44166186-44166205 None:intergenic 25.0%
!! ACAGTCTTTAAAAGTAAAAG+AGG - chr7_4:44166187-44166206 None:intergenic 25.0%
! TGTATAATAATGTTGCTGTA+TGG - chr7_4:44166229-44166248 None:intergenic 25.0%
! TACAGCAACATTATTATACA+AGG + chr7_4:44166229-44166248 Msa1155990:intron 25.0%
!! CTTTTCTGTTAGATTATGTT+TGG - chr7_4:44166398-44166417 None:intergenic 25.0%
! AGAATCTAACATCAACATAA+AGG - chr7_4:44166500-44166519 None:intergenic 25.0%
! CAATACAAATTCCCTTAAAA+GGG - chr7_4:44166990-44167009 None:intergenic 25.0%
!! GAGTTTACCTATTGATAATT+TGG + chr7_4:44167164-44167183 Msa1155990:CDS 25.0%
! TTAAGCTCCAAATTATCAAT+AGG - chr7_4:44167174-44167193 None:intergenic 25.0%
! ATGTAATGTAGTTACTGTTA+AGG + chr7_4:44167217-44167236 Msa1155990:exon 25.0%
!!! CTTTTTTCTCTACTAGTTTA+TGG + chr7_4:44167274-44167293 Msa1155990:three_prime_UTR 25.0%
!! TACTAGTTTATGGAACTTAA+TGG + chr7_4:44167284-44167303 Msa1155990:three_prime_UTR 25.0%
ACAACTTCATTTGAGTACAA+TGG + chr7_4:44163758-44163777 Msa1155990:CDS 30.0%
! TAGTCACTTTACTCTCTATT+TGG + chr7_4:44163961-44163980 Msa1155990:CDS 30.0%
! AACTATGAAGTACTCGAATT+TGG + chr7_4:44164051-44164070 Msa1155990:intron 30.0%
TTCAATGTAATCATATGCGT+CGG - chr7_4:44164113-44164132 None:intergenic 30.0%
TGTCAGTATATGGACTTTAA+AGG + chr7_4:44164170-44164189 Msa1155990:intron 30.0%
CTTAGCAAGTGTTTATTATG+TGG + chr7_4:44164221-44164240 Msa1155990:intron 30.0%
! AGTAAATTTTCATGAGGAAC+CGG - chr7_4:44164416-44164435 None:intergenic 30.0%
CTCACGTAAACTTAACTTTA+CGG + chr7_4:44164662-44164681 Msa1155990:intron 30.0%
TAACTTTACGGTGAATCAAT+TGG + chr7_4:44164674-44164693 Msa1155990:intron 30.0%
TATTGCTCTAATAGAAAGTG+AGG - chr7_4:44164851-44164870 None:intergenic 30.0%
! TTCTGAGTGTGAAACATTTT+TGG + chr7_4:44165043-44165062 Msa1155990:intron 30.0%
AGATTCAGAAGCTTCATATT+TGG + chr7_4:44165211-44165230 Msa1155990:CDS 30.0%
GTAAGATTAAAAAAACCGCA+AGG + chr7_4:44165597-44165616 Msa1155990:intron 30.0%
! GTTCTACTTCTTCTAGAAAA+CGG + chr7_4:44165619-44165638 Msa1155990:intron 30.0%
! ATTTTCCCCTGTTAACAAAA+GGG - chr7_4:44165955-44165974 None:intergenic 30.0%
AAATCTTCAAATACTGACCT+GGG - chr7_4:44166303-44166322 None:intergenic 30.0%
AAAATCTTCAAATACTGACC+TGG - chr7_4:44166304-44166323 None:intergenic 30.0%
ACAATGCAACCAAAAAACTA+TGG + chr7_4:44166446-44166465 Msa1155990:intron 30.0%
!!! CAATCCAATCCATAGTTTTT+TGG - chr7_4:44166458-44166477 None:intergenic 30.0%
!! CTGATTACTAGTTGTTTTGT+AGG - chr7_4:44166622-44166641 None:intergenic 30.0%
TTACCATGCATACTATGAAA+TGG + chr7_4:44166818-44166837 Msa1155990:CDS 30.0%
TACCATGCATACTATGAAAT+GGG + chr7_4:44166819-44166838 Msa1155990:CDS 30.0%
! TAGTTGATATTTGCAATCTC+AGG - chr7_4:44166907-44166926 None:intergenic 30.0%
! AATCTCTAATGACCCTTTTA+AGG + chr7_4:44166975-44166994 Msa1155990:CDS 30.0%
! ATCTCTAATGACCCTTTTAA+GGG + chr7_4:44166976-44166995 Msa1155990:CDS 30.0%
GCAATACAAATTCCCTTAAA+AGG - chr7_4:44166991-44167010 None:intergenic 30.0%
! AGTGCTTCATTGACAGATTT+TGG + chr7_4:44163800-44163819 Msa1155990:CDS 35.0%
ATTAGTCACCTAAGTCAGTA+TGG + chr7_4:44163872-44163891 Msa1155990:CDS 35.0%
GTAATCCGAAATTCAGCTAA+AGG + chr7_4:44164439-44164458 Msa1155990:intron 35.0%
CGTAAAGTTAAGTTTACGTG+AGG - chr7_4:44164664-44164683 None:intergenic 35.0%
! ATTTAACGGACCACACATTA+TGG - chr7_4:44164992-44165011 None:intergenic 35.0%
TAATGTAGGATATCACTGAG+TGG + chr7_4:44165134-44165153 Msa1155990:intron 35.0%
CTTGAACCATTACCATCATA+CGG + chr7_4:44165163-44165182 Msa1155990:CDS 35.0%
! CATATTTGGAACAAACCTCA+CGG + chr7_4:44165225-44165244 Msa1155990:CDS 35.0%
GATGTTATTGTCACAGGTAT+GGG + chr7_4:44165247-44165266 Msa1155990:intron 35.0%
ATGTTATTGTCACAGGTATG+GGG + chr7_4:44165248-44165267 Msa1155990:intron 35.0%
! GTCAATCACTGTTAGTGTTT+TGG + chr7_4:44165643-44165662 Msa1155990:intron 35.0%
TTCCTTAACTTATGCCCTAA+GGG + chr7_4:44165889-44165908 Msa1155990:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+GGG - chr7_4:44165906-44165925 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+AGG - chr7_4:44165907-44165926 None:intergenic 35.0%
! CATTTTCCCCTGTTAACAAA+AGG - chr7_4:44165956-44165975 None:intergenic 35.0%
! CTTTTGTTAACAGGGGAAAA+TGG + chr7_4:44165954-44165973 Msa1155990:intron 35.0%
GTGAATATACGCATTAGTAG+TGG - chr7_4:44166148-44166167 None:intergenic 35.0%
GCAACCAAAAAACTATGGAT+TGG + chr7_4:44166451-44166470 Msa1155990:intron 35.0%
AAGACTGCTACATAGTTTCT+GGG + chr7_4:44166539-44166558 Msa1155990:CDS 35.0%
GATGAGTATGGCATCAAATT+TGG + chr7_4:44166592-44166611 Msa1155990:CDS 35.0%
! AAATGGGCATTTAAGATGAC+TGG + chr7_4:44166835-44166854 Msa1155990:CDS 35.0%
TATCAACTATAGAGATGTCG+TGG + chr7_4:44166918-44166937 Msa1155990:CDS 35.0%
TTTCTACTCTCAGCTCTTTC+TGG - chr7_4:44163725-44163744 None:intergenic 40.0%
! GCTTCATTGACAGATTTTGG+TGG + chr7_4:44163803-44163822 Msa1155990:CDS 40.0%
!!! TTGACAGATTTTGGTGGTGT+TGG + chr7_4:44163809-44163828 Msa1155990:CDS 40.0%
!! CTTGAGAACCATACTGACTT+AGG - chr7_4:44163883-44163902 None:intergenic 40.0%
CTAAGTCAGTATGGTTCTCA+AGG + chr7_4:44163881-44163900 Msa1155990:CDS 40.0%
TGTATGTTCCAGCAGGAAAA+TGG + chr7_4:44163915-44163934 Msa1155990:CDS 40.0%
AATGAGATACCTGAGAAGCA+AGG - chr7_4:44164003-44164022 None:intergenic 40.0%
TTATAGAGGGAATCACGTGA+GGG + chr7_4:44164772-44164791 Msa1155990:intron 40.0%
GGATGTTATTGTCACAGGTA+TGG + chr7_4:44165246-44165265 Msa1155990:intron 40.0%
CTAGAAGAAGTAGAACCTTG+CGG - chr7_4:44165615-44165634 None:intergenic 40.0%
!! GTATTTTGGACCACCTATGA+AGG - chr7_4:44165701-44165720 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr7_4:44165749-44165768 Msa1155990:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr7_4:44165750-44165769 Msa1155990:intron 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG - chr7_4:44165767-44165786 None:intergenic 40.0%
GTTCCTTAACTTATGCCCTA+AGG + chr7_4:44165888-44165907 Msa1155990:intron 40.0%
! ACTGTGACCCTTTTGTTAAC+AGG + chr7_4:44165945-44165964 Msa1155990:intron 40.0%
! CTGTGACCCTTTTGTTAACA+GGG + chr7_4:44165946-44165965 Msa1155990:intron 40.0%
! TGTGACCCTTTTGTTAACAG+GGG + chr7_4:44165947-44165966 Msa1155990:intron 40.0%
AAATGCACCTTGACCATCTA+TGG - chr7_4:44165982-44166001 None:intergenic 40.0%
! TAGATGGTCAAGGTGCATTT+TGG + chr7_4:44165982-44166001 Msa1155990:CDS 40.0%
! GGAGAGTTAGATTTGAGACT+TGG - chr7_4:44166082-44166101 None:intergenic 40.0%
! CATTCCATGATGGGGAATTA+AGG - chr7_4:44166103-44166122 None:intergenic 40.0%
AGGATGAACATTCCATGATG+GGG - chr7_4:44166111-44166130 None:intergenic 40.0%
CAGGATGAACATTCCATGAT+GGG - chr7_4:44166112-44166131 None:intergenic 40.0%
ACAGGATGAACATTCCATGA+TGG - chr7_4:44166113-44166132 None:intergenic 40.0%
ATGTTCATCCTGTTTACAGC+AGG + chr7_4:44166120-44166139 Msa1155990:CDS 40.0%
TCAGTGTTAGGAGATGAGAT+AGG - chr7_4:44166271-44166290 None:intergenic 40.0%
ATCTCATCTCCTAACACTGA+TGG + chr7_4:44166271-44166290 Msa1155990:CDS 40.0%
GAAGACTGCTACATAGTTTC+TGG + chr7_4:44166538-44166557 Msa1155990:CDS 40.0%
AGACTGCTACATAGTTTCTG+GGG + chr7_4:44166540-44166559 Msa1155990:CDS 40.0%
AGTATGGCATCAAATTTGGC+AGG + chr7_4:44166596-44166615 Msa1155990:CDS 40.0%
GTCAGAATCAAAACAGCTGT+TGG + chr7_4:44166757-44166776 Msa1155990:CDS 40.0%
! ATCAAAACAGCTGTTGGTAG+AGG + chr7_4:44166763-44166782 Msa1155990:CDS 40.0%
TGCCCATTTCATAGTATGCA+TGG - chr7_4:44166824-44166843 None:intergenic 40.0%
! CAATCTCAGGCAAAGCATTA+GGG - chr7_4:44166894-44166913 None:intergenic 40.0%
AGAATGTTACCATAGCAGCT+AGG + chr7_4:44166944-44166963 Msa1155990:CDS 40.0%
TGTATTGCAAACGTGACACT+AGG + chr7_4:44167003-44167022 Msa1155990:CDS 40.0%
GTATTGCAAACGTGACACTA+GGG + chr7_4:44167004-44167023 Msa1155990:CDS 40.0%
TTAAGGCCAAGAAAAGGTCA+TGG + chr7_4:44167034-44167053 Msa1155990:CDS 40.0%
! TGGACATGCACTGATATTGA+AGG + chr7_4:44167054-44167073 Msa1155990:CDS 40.0%
! GGACATGCACTGATATTGAA+GGG + chr7_4:44167055-44167074 Msa1155990:CDS 40.0%
CAATAGGTAAACTCTCTGCT+GGG - chr7_4:44167158-44167177 None:intergenic 40.0%
TCAATAGGTAAACTCTCTGC+TGG - chr7_4:44167159-44167178 None:intergenic 40.0%
!!! GATTTTGGTGGTGTTGGAGA+TGG + chr7_4:44163815-44163834 Msa1155990:CDS 45.0%
AGTCAGTATGGTTCTCAAGG+TGG + chr7_4:44163884-44163903 Msa1155990:CDS 45.0%
!! TACTCGAATTTGGTGTGTCC+TGG + chr7_4:44164061-44164080 Msa1155990:intron 45.0%
! GTAATCATATGCGTCGGTGT+GGG - chr7_4:44164107-44164126 None:intergenic 45.0%
! TGTAATCATATGCGTCGGTG+TGG - chr7_4:44164108-44164127 None:intergenic 45.0%
GGGTAGCTGCATCTTGAAAA+GGG - chr7_4:44164304-44164323 None:intergenic 45.0%
GTTATAGAGGGAATCACGTG+AGG + chr7_4:44164771-44164790 Msa1155990:intron 45.0%
CCTGATTGGTGTGTGAATGT+AGG - chr7_4:44164969-44164988 None:intergenic 45.0%
CCTACATTCACACACCAATC+AGG + chr7_4:44164966-44164985 Msa1155990:intron 45.0%
ACCAATCAGGCCATAATGTG+TGG + chr7_4:44164979-44164998 Msa1155990:intron 45.0%
ACCACACATTATGGCCTGAT+TGG - chr7_4:44164983-44165002 None:intergenic 45.0%
CCTCTACCGTATGATGGTAA+TGG - chr7_4:44165172-44165191 None:intergenic 45.0%
CCATTACCATCATACGGTAG+AGG + chr7_4:44165169-44165188 Msa1155990:CDS 45.0%
TCTCTTCCTCTACCGTATGA+TGG - chr7_4:44165178-44165197 None:intergenic 45.0%
AAGCTTCTGAATCTTCCTGC+TGG - chr7_4:44165205-44165224 None:intergenic 45.0%
CTGTGACAATAACATCCGTG+AGG - chr7_4:44165243-44165262 None:intergenic 45.0%
CTCACGGATGTTATTGTCAC+AGG + chr7_4:44165241-44165260 Msa1155990:CDS 45.0%
ACATAGCCTATTCGACGTTG+CGG + chr7_4:44165357-44165376 Msa1155990:intron 45.0%
TTATCACCGCAACGTCGAAT+AGG - chr7_4:44165366-44165385 None:intergenic 45.0%
GACAGTGACTTGACTGATGT+CGG - chr7_4:44165571-44165590 None:intergenic 45.0%
! TTTTGGACCACCTATGAAGG+TGG - chr7_4:44165698-44165717 None:intergenic 45.0%
!! GTTCCTTAACTTGTGCCCTA+AGG - chr7_4:44165768-44165787 None:intergenic 45.0%
TGCCCTTAGGGCATAAGTTA+AGG - chr7_4:44165894-44165913 None:intergenic 45.0%
AATGGCACCATAGATGGTCA+AGG + chr7_4:44165972-44165991 Msa1155990:CDS 45.0%
! ATGGTCAAGGTGCATTTTGG+TGG + chr7_4:44165985-44166004 Msa1155990:CDS 45.0%
CTCTCCTTAATTCCCCATCA+TGG + chr7_4:44166096-44166115 Msa1155990:CDS 45.0%
TAGTGGTACCTGCTGTAAAC+AGG - chr7_4:44166131-44166150 None:intergenic 45.0%
!! GGGTTGATACCATCAGTGTT+AGG - chr7_4:44166283-44166302 None:intergenic 45.0%
AACACTGATGGTATCAACCC+AGG + chr7_4:44166283-44166302 Msa1155990:CDS 45.0%
TGTTGCTGTGAAGAGTGGAT+GGG + chr7_4:44166570-44166589 Msa1155990:CDS 45.0%
AAGAGTGGATGGGATGAGTA+TGG + chr7_4:44166580-44166599 Msa1155990:CDS 45.0%
AAGGCAATGGTTGCACTGAA+TGG - chr7_4:44166664-44166683 None:intergenic 45.0%
TTCAGTGCAACCATTGCCTT+AGG + chr7_4:44166664-44166683 Msa1155990:CDS 45.0%
CATCTCACTTCCTAAGGCAA+TGG - chr7_4:44166677-44166696 None:intergenic 45.0%
TCCTGACATCTCACTTCCTA+AGG - chr7_4:44166683-44166702 None:intergenic 45.0%
TTAGGAAGTGAGATGTCAGG+AGG + chr7_4:44166682-44166701 Msa1155990:CDS 45.0%
TAGGAAGTGAGATGTCAGGA+GGG + chr7_4:44166683-44166702 Msa1155990:CDS 45.0%
TCGAATGGCTGTGATGTCTT+CGG - chr7_4:44166725-44166744 None:intergenic 45.0%
ACAGCCATTCGAACAGAATC+AGG + chr7_4:44166733-44166752 Msa1155990:CDS 45.0%
GACACCTGATTCTGTTCGAA+TGG - chr7_4:44166740-44166759 None:intergenic 45.0%
! AAAACAGCTGTTGGTAGAGG+AGG + chr7_4:44166766-44166785 Msa1155990:CDS 45.0%
! AAACAGCTGTTGGTAGAGGA+GGG + chr7_4:44166767-44166786 Msa1155990:CDS 45.0%
! GCAATCTCAGGCAAAGCATT+AGG - chr7_4:44166895-44166914 None:intergenic 45.0%
ACCATAGCAGCTAGGTTTCA+AGG + chr7_4:44166952-44166971 Msa1155990:CDS 45.0%
TCCTTGAAACCTAGCTGCTA+TGG - chr7_4:44166956-44166975 None:intergenic 45.0%
TGGCTGTTAAGGCCAAGAAA+AGG + chr7_4:44167028-44167047 Msa1155990:CDS 45.0%
! GCATGTCCATGACCTTTTCT+TGG - chr7_4:44167043-44167062 None:intergenic 45.0%
TGATCAGGCAACAGATCACA+AGG - chr7_4:44167105-44167124 None:intergenic 45.0%
TGTGATCTGTTGCCTGATCA+AGG + chr7_4:44167105-44167124 Msa1155990:CDS 45.0%
GTGATCTGTTGCCTGATCAA+GGG + chr7_4:44167106-44167125 Msa1155990:CDS 45.0%
! ATTTTCTCAGGCCCTTGATC+AGG - chr7_4:44167120-44167139 None:intergenic 45.0%
GATCAAGGGCCTGAGAAAAT+CGG + chr7_4:44167120-44167139 Msa1155990:CDS 45.0%
ATCAAGGGCCTGAGAAAATC+GGG + chr7_4:44167121-44167140 Msa1155990:CDS 45.0%
!!! AAAAAAAAAAAAAAAGATTT+TGG - chr7_4:44164378-44164397 None:intergenic 5.0%
TGCTCTCTTTGTGGTGACAC+TGG + chr7_4:44163694-44163713 Msa1155990:CDS 50.0%
TCTCAGCTGTATGTTCCAGC+AGG + chr7_4:44163908-44163927 Msa1155990:CDS 50.0%
TGCTGTTCTCCTTGCTTCTC+AGG + chr7_4:44163991-44164010 Msa1155990:CDS 50.0%
GACGTCGACGTGTCAGTATA+TGG + chr7_4:44164160-44164179 Msa1155990:intron 50.0%
GGGGTAGCTGCATCTTGAAA+AGG - chr7_4:44164305-44164324 None:intergenic 50.0%
!! GATGGTAATGGTTCAAGCGC+AGG - chr7_4:44165160-44165179 None:intergenic 50.0%
CCTATGAAGGTGGTACACTG+TGG - chr7_4:44165688-44165707 None:intergenic 50.0%
CCACAGTGTACCACCTTCAT+AGG + chr7_4:44165685-44165704 Msa1155990:intron 50.0%
CAGTGTACCACCTTCATAGG+TGG + chr7_4:44165688-44165707 Msa1155990:intron 50.0%
TGCCCTTAGGGCACAAGTTA+AGG + chr7_4:44165762-44165781 Msa1155990:intron 50.0%
GGGGAAAATGGCACCATAGA+TGG + chr7_4:44165966-44165985 Msa1155990:intron 50.0%
! GACTGTGTTGCTGTGAAGAG+TGG + chr7_4:44166565-44166584 Msa1155990:CDS 50.0%
! GTGTTGCTGTGAAGAGTGGA+TGG + chr7_4:44166569-44166588 Msa1155990:CDS 50.0%
GCCTTAGGAAGTGAGATGTC+AGG + chr7_4:44166679-44166698 Msa1155990:CDS 50.0%
! TGGTAGAGGAGGGTATGTGA+AGG + chr7_4:44166777-44166796 Msa1155990:CDS 50.0%
TGCAAACGTGACACTAGGGA+TGG + chr7_4:44167008-44167027 Msa1155990:CDS 50.0%
GACACTAGGGATGGCTGTTA+AGG + chr7_4:44167017-44167036 Msa1155990:CDS 50.0%
TCAGGCAACAGATCACAAGG+CGG - chr7_4:44167102-44167121 None:intergenic 50.0%
TCAAGGGCCTGAGAAAATCG+GGG + chr7_4:44167122-44167141 Msa1155990:CDS 50.0%
ACTCTCTGCTGGGAAATCAC+AGG - chr7_4:44167148-44167167 None:intergenic 50.0%
!! CCAGTGAGCCATTTTCCTGC+TGG - chr7_4:44163926-44163945 None:intergenic 55.0%
CCAGCAGGAAAATGGCTCAC+TGG + chr7_4:44163923-44163942 Msa1155990:CDS 55.0%
AACGACTCATGTGCGACACC+AGG - chr7_4:44164082-44164101 None:intergenic 55.0%
AGAGGAAGAGATGCACCAGC+AGG + chr7_4:44165187-44165206 Msa1155990:CDS 55.0%
! TCACAGGCCCCGATTTTCTC+AGG - chr7_4:44167132-44167151 None:intergenic 55.0%
GGCAACAGATCACAAGGCGG+AGG - chr7_4:44167099-44167118 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44163656 44167369 44163656 ID=Msa1155990;Name=Msa1155990
chr7_4 mRNA 44163656 44167369 44163656 ID=Msa1155990-mRNA-1;Parent=Msa1155990;Name=Msa1155990-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0.8|1|1|1|5|142|478
chr7_4 exon 44163656 44164012 44163656 ID=Msa1155990-mRNA-1:exon:11211;Parent=Msa1155990-mRNA-1
chr7_4 exon 44165142 44165262 44165142 ID=Msa1155990-mRNA-1:exon:11212;Parent=Msa1155990-mRNA-1
chr7_4 exon 44165967 44166141 44165967 ID=Msa1155990-mRNA-1:exon:11213;Parent=Msa1155990-mRNA-1
chr7_4 exon 44166234 44166304 44166234 ID=Msa1155990-mRNA-1:exon:11214;Parent=Msa1155990-mRNA-1
chr7_4 exon 44166515 44167369 44166515 ID=Msa1155990-mRNA-1:exon:11215;Parent=Msa1155990-mRNA-1
chr7_4 CDS 44163656 44164012 44163656 ID=Msa1155990-mRNA-1:cds;Parent=Msa1155990-mRNA-1
chr7_4 CDS 44165142 44165262 44165142 ID=Msa1155990-mRNA-1:cds;Parent=Msa1155990-mRNA-1
chr7_4 CDS 44165967 44166141 44165967 ID=Msa1155990-mRNA-1:cds;Parent=Msa1155990-mRNA-1
chr7_4 CDS 44166234 44166304 44166234 ID=Msa1155990-mRNA-1:cds;Parent=Msa1155990-mRNA-1
chr7_4 CDS 44166515 44167227 44166515 ID=Msa1155990-mRNA-1:cds;Parent=Msa1155990-mRNA-1
chr7_4 three_prime_UTR 44167228 44167369 44167228 ID=Msa1155990-mRNA-1:three_prime_utr;Parent=Msa1155990-mRNA-1
Gene Sequence

>Msa1155990

ATGGCTATGTTGATTTTACAGGTTCTAAAAATAATTTTTGCTCTCTTTGTGGTGACACTGGTGTATCCAGAAAGAGCTGAGAGTAGAAAAGCAAAAATTGTGACAACTTCATTTGAGTACAATGGTATAAATTGTAGAGCACATAGTGCTTCATTGACAGATTTTGGTGGTGTTGGAGATGGAAATACATCTAATACAAAGGCTTTTGAGTCTGCAATTAGTCACCTAAGTCAGTATGGTTCTCAAGGTGGCTCTCAGCTGTATGTTCCAGCAGGAAAATGGCTCACTGGTAGTTTTAGTCTTACTAGTCACTTTACTCTCTATTTGGATAAAGATGCTGTTCTCCTTGCTTCTCAGGATATCACTGAGTGGCCTGCGCTTGAACCATTACCATCATACGGTAGAGGAAGAGATGCACCAGCAGGAAGATTCAGAAGCTTCATATTTGGAACAAACCTCACGGATGTTATTGTCACAGGGGAAAATGGCACCATAGATGGTCAAGGTGCATTTTGGTGGCAACAATTTCACAGAAAAAAATTGAAGTACACTCGTCCATACTTGATTGAACTTATGTTCTCAGACAGCATCCAAGTCTCAAATCTAACTCTCCTTAATTCCCCATCATGGAATGTTCATCCTGTTTACAGCAGCAACATTATTATACAAGGTATCACAATCATTGCTCCTATCTCATCTCCTAACACTGATGGTATCAACCCAGATTCTTGCACAAATACAAAAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTTGCTGTGAAGAGTGGATGGGATGAGTATGGCATCAAATTTGGCAGGCCTACAAAACAACTAGTAATCAGAAGACTAACATGCATTTCACCATTCAGTGCAACCATTGCCTTAGGAAGTGAGATGTCAGGAGGGATACAAGACGTCAGAGCCGAAGACATCACAGCCATTCGAACAGAATCAGGTGTCAGAATCAAAACAGCTGTTGGTAGAGGAGGGTATGTGAAGGACATATATGTAAAAAGATTTACCATGCATACTATGAAATGGGCATTTAAGATGACTGGTGATTATAATTCACATGCTGATACTCACTTTGACCCTAATGCTTTGCCTGAGATTGCAAATATCAACTATAGAGATGTCGTGGCTGAGAATGTTACCATAGCAGCTAGGTTTCAAGGAATCTCTAATGACCCTTTTAAGGGAATTTGTATTGCAAACGTGACACTAGGGATGGCTGTTAAGGCCAAGAAAAGGTCATGGACATGCACTGATATTGAAGGGATGACTAGCAGTGTGACGCCTCCGCCTTGTGATCTGTTGCCTGATCAAGGGCCTGAGAAAATCGGGGCCTGTGATTTCCCAGCAGAGAGTTTACCTATTGATAATTTGGAGCTTAAGAAGTGTAGTTACAGCATGAAATATGTAATGTAG
Protein sequence

>Msa1155990

MAMLILQVLKIIFALFVVTLVYPERAESRKAKIVTTSFEYNGINCRAHSASLTDFGGVGDGNTSNTKAFESAISHLSQYGSQGGSQLYVPAGKWLTGSFSLTSHFTLYLDKDAVLLASQDITEWPALEPLPSYGRGRDAPAGRFRSFIFGTNLTDVIVTGENGTIDGQGAFWWQQFHRKKLKYTRPYLIELMFSDSIQVSNLTLLNSPSWNVHPVYSSNIIIQGITIIAPISSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIKFGRPTKQLVIRRLTCISPFSATIALGSEMSGGIQDVRAEDITAIRTESGVRIKTAVGRGGYVKDIYVKRFTMHTMKWAFKMTGDYNSHADTHFDPNALPEIANINYRDVVAENVTIAARFQGISNDPFKGICIANVTLGMAVKAKKRSWTCTDIEGMTSSVTPPPCDLLPDQGPEKIGACDFPAESLPIDNLELKKCSYSMKYVM*