AlfalfaGEDB | Msa1112890

M. sativa cultivar zhongmu-4 / Msa1112890

KEGG: -
GO: -
PFAM: PF12708.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112890	XP_003624048.1	87.578	483	15	3	1	438	1	483	0.0	833

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112890	sp\|A7PZL3\|PGLR_VITVI	67.699	452	100	4	30	436	39	489	0.0	632

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112890	G7L6K9	87.578	483	15	3	1	438	1	483	0.0	833

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0596630	Msa1112890	0.827920	1.198237e-54	-8.615850e-47
Msa0675120	Msa1112890	0.858636	7.192112e-63	-8.615850e-47
Msa1067320	Msa1112890	0.843447	1.393407e-58	-8.615850e-47
Msa1112890	Msa1155990	0.979598	2.538935e-148	-8.615850e-47
Msa1112890	Msa1259160	0.808314	3.291143e-50	-8.615850e-47
Msa1112890	Msa1299650	0.807435	5.061682e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112890	MtrunA17_Chr7g0248451	87.578	483	15	3	1	438	1	483	0.0	833
Msa1112890	MtrunA17_Chr8g0348491	69.937	479	99	3	1	434	1	479	0.0	672
Msa1112890	MtrunA17_Chr8g0387391	66.667	450	105	3	32	436	21	470	0.0	617
Msa1112890	MtrunA17_Chr1g0202641	58.442	462	142	5	17	432	16	473	0.0	545
Msa1112890	MtrunA17_Chr1g0202641	58.009	462	145	6	17	432	516	974	0.0	540
Msa1112890	MtrunA17_Chr1g0202651	59.152	448	133	5	31	432	30	473	0.0	530
Msa1112890	MtrunA17_Chr1g0202621	55.054	465	153	6	14	432	6	460	0.0	513
Msa1112890	MtrunA17_Chr7g0255311	56.250	464	143	7	16	431	32	483	6.79e-180	511
Msa1112890	MtrunA17_Chr7g0270821	45.270	444	186	6	16	413	12	444	9.09e-128	377
Msa1112890	MtrunA17_Chr1g0193961	46.210	409	170	6	51	413	39	443	3.38e-124	369

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112890	AT3G61490.4	61.006	477	132	5	12	434	112	588	0.0	599
Msa1112890	AT3G61490.5	61.006	477	132	5	12	434	14	490	0.0	596
Msa1112890	AT3G61490.2	63.077	455	117	4	31	434	21	475	0.0	595
Msa1112890	AT3G61490.3	63.077	455	117	4	31	434	21	475	0.0	595
Msa1112890	AT3G61490.1	63.077	455	117	4	31	434	21	475	0.0	595
Msa1112890	AT4G23500.1	59.637	441	132	4	43	438	56	495	0.0	538
Msa1112890	AT3G48950.1	56.550	458	152	5	20	430	10	467	0.0	532
Msa1112890	AT2G23900.1	52.878	469	171	6	11	431	10	476	1.04e-175	500
Msa1112890	AT3G62110.1	42.959	419	188	5	51	418	39	457	2.10e-122	364
Msa1112890	AT3G62110.2	42.959	419	188	5	51	418	39	457	2.10e-122	364

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Find 101 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCTGTTGGTAGAGG+AGG	0.553170	7_3:+58893527	Msa1112890:CDS
AAACAGCTGTTGGTAGAGGA+GGG	0.626382	7_3:+58893528	Msa1112890:CDS
AAATGGGCATTTAAGATGAC+TGG	0.567772	7_3:+58893596	Msa1112890:CDS
AAGACTGCTACATAGTTTCT+GGG	0.462202	7_3:+58893300	Msa1112890:CDS
AAGAGTGGATGGGATGAGTA+TGG	0.455331	7_3:+58893341	Msa1112890:CDS
AAGCTTCTGAATCTTCCTGC+TGG	0.539199	7_3:-58891963	None:intergenic
AAGGCAATGGTTGCACTGAA+TGG	0.560248	7_3:-58893422	None:intergenic
ACAACTTCATTTGAGTACAA+TGG	0.606953	7_3:+58890468	Msa1112890:CDS
ACAGCCATTCGAACAGAATC+AGG	0.401749	7_3:+58893494	Msa1112890:CDS
ACAGGATGAACATTCCATGA+TGG	0.539320	7_3:-58892871	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACTTCATTTGAGTACAA+TGG	+	chr7_3:58890468-58890487	Msa1112890:CDS	30.0%
TTCAATGTAATCATATGCGT+CGG	-	chr7_3:58890823-58890842	None:intergenic	30.0%
TGTCAGTATATGGACTTTAA+AGG	+	chr7_3:58890880-58890899	Msa1112890:intron	30.0%
CTTAGCAAGTGTTTATTATG+TGG	+	chr7_3:58890931-58890950	Msa1112890:intron	30.0%
CTCACGTAAACTTAACTTTA+CGG	+	chr7_3:58891369-58891388	Msa1112890:intron	30.0%
TAACTTTACGGTGAATCAAT+TGG	+	chr7_3:58891381-58891400	Msa1112890:intron	30.0%
TATTGCTCTAATAGAAAGTG+AGG	-	chr7_3:58891558-58891577	None:intergenic	30.0%
AGATTCAGAAGCTTCATATT+TGG	+	chr7_3:58891972-58891991	Msa1112890:CDS	30.0%
GTAAGATTAAAAAAACCGCA+AGG	+	chr7_3:58892358-58892377	Msa1112890:intron	30.0%
TGAAATGTGAATATACGCAT+TGG	-	chr7_3:58892915-58892934	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	58890178	58894130	58890178	ID=Msa1112890;Name=Msa1112890
chr7_3	mRNA	58890178	58894130	58890178	ID=Msa1112890-mRNA-1;Parent=Msa1112890;Name=Msa1112890-mRNA-1;_AED=0.20;_eAED=0.20;_QI=44\|0.4\|0.5\|1\|1\|1\|6\|142\|438
chr7_3	exon	58890178	58890257	58890178	ID=Msa1112890-mRNA-1:exon:13009;Parent=Msa1112890-mRNA-1
chr7_3	exon	58890387	58890704	58890387	ID=Msa1112890-mRNA-1:exon:13010;Parent=Msa1112890-mRNA-1
chr7_3	exon	58891903	58892023	58891903	ID=Msa1112890-mRNA-1:exon:13011;Parent=Msa1112890-mRNA-1
chr7_3	exon	58892833	58892902	58892833	ID=Msa1112890-mRNA-1:exon:13012;Parent=Msa1112890-mRNA-1
chr7_3	exon	58892995	58893053	58892995	ID=Msa1112890-mRNA-1:exon:13013;Parent=Msa1112890-mRNA-1
chr7_3	exon	58893276	58894130	58893276	ID=Msa1112890-mRNA-1:exon:13014;Parent=Msa1112890-mRNA-1
chr7_3	five_prime_UTR	58890178	58890221	58890178	ID=Msa1112890-mRNA-1:five_prime_utr;Parent=Msa1112890-mRNA-1
chr7_3	CDS	58890222	58890257	58890222	ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1
chr7_3	CDS	58890387	58890704	58890387	ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1
chr7_3	CDS	58891903	58892023	58891903	ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1
chr7_3	CDS	58892833	58892902	58892833	ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1
chr7_3	CDS	58892995	58893053	58892995	ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1
chr7_3	CDS	58893276	58893988	58893276	ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1
chr7_3	three_prime_UTR	58893989	58894130	58893989	ID=Msa1112890-mRNA-1:three_prime_utr;Parent=Msa1112890-mRNA-1

Gene Sequence

>Msa1112890

ATGAAGCTCTTGTGGAAAACTCACATAAGGGTACAAGTTCTAAAAATAATTTTTGCTCTCTTTGTGGTGACACTGGTGTATCCAGAAAGAGCTGAGAGTAGAAAAGCAAAAATTGTGACAACTTCATTTGAGTACAATGGTATAAATTGTAGAGCACATAGTGCTTCATTGACAGATTTTGGTGGTGTTGGAGATGGAAATACATCTAATACAAAGGCTTTTGAGTCTGCAATTAGTCACCTAAGTCAGTATGGTTCTCAAGGTGGCTCTCAGCTGTATGTTCCAGCAGGAAAATGGCTCACTGGTAGTTTTAGTCTTACTAGTCACTTTACTCTCTATTTGGATAAAGATGCTGATATCACTGAGTGGCCTGCGCTTGAACCATTACCATCATACGGTAGAGGAAGAGATGCACCAGCAGGAAGATTCAGAAGCTTCATATTTGGAACAAACCTCACGGATGTTATTGTCACAGACAGCATCCAAGTCTCAAATCTAACTCTCCTTAATTCCCCATCATGGAATGTTCATCCTGTTTACAGCAGCAACATTATTATACAAGGTATCACAATCATTGCTCCTATCTCATCTCCTAACACTGATGATTCTTGCACAAATACAAAAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTTGCTGTGAAGAGTGGATGGGATGAGTATGGCATCAAATTTGGCAGGCCTACAAAACAACTAGTAATCAGAAGACTAACATGCATTTCACCATTCAGTGCAACCATTGCCTTAGGAAGTGAGATGTCAGGAGGGATACAAGACGTCAGAGCCGAAGACATCACAGCCATTCGAACAGAATCAGGTGTCAGAATCAAAACAGCTGTTGGTAGAGGAGGGTATGTGAAGGACATATATGTAAAAAGATTTACCATGCATACTATGAAATGGGCATTTAAGATGACTGGTGATTATAATTCACATGCTGATACTCACTTTGACCCTAATGCTTTGCCTGAGATTGCAAATATCAACTATAGAGATGTCGTGGCTGAGAATGTTACCATAGCAGCTAGGTTTCAAGGAATCTCTAATGACCCTTTTAAGGGAATTTGTATTGCAAACGTGACACTAGGGATGGCTGTTAAGGCCAAGAAAAGGTCATGGACATGCACTGATATTGAAGGGATGACTAGCAGTGTGACGCCTCCGCCTTGTGATCTGTTGCCTGATCAAGGGCCTGAGAAAATCGGGGCCTGTGATTTCCCAGCAGAGAGTTTACCTATTGATAATTTGGAGCTTAAGAAGTGTAGTTACAGCATGAAATATGTAATGTAG

Protein sequence

>Msa1112890

MKLLWKTHIRVQVLKIIFALFVVTLVYPERAESRKAKIVTTSFEYNGINCRAHSASLTDFGGVGDGNTSNTKAFESAISHLSQYGSQGGSQLYVPAGKWLTGSFSLTSHFTLYLDKDADITEWPALEPLPSYGRGRDAPAGRFRSFIFGTNLTDVIVTDSIQVSNLTLLNSPSWNVHPVYSSNIIIQGITIIAPISSPNTDDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIKFGRPTKQLVIRRLTCISPFSATIALGSEMSGGIQDVRAEDITAIRTESGVRIKTAVGRGGYVKDIYVKRFTMHTMKWAFKMTGDYNSHADTHFDPNALPEIANINYRDVVAENVTIAARFQGISNDPFKGICIANVTLGMAVKAKKRSWTCTDIEGMTSSVTPPPCDLLPDQGPEKIGACDFPAESLPIDNLELKKCSYSMKYVM*