Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112890 | XP_003624048.1 | 87.578 | 483 | 15 | 3 | 1 | 438 | 1 | 483 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112890 | sp|A7PZL3|PGLR_VITVI | 67.699 | 452 | 100 | 4 | 30 | 436 | 39 | 489 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112890 | G7L6K9 | 87.578 | 483 | 15 | 3 | 1 | 438 | 1 | 483 | 0.0 | 833 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0675120 | Msa1112890 | 0.858636 | 7.192112e-63 | -8.615850e-47 |
| Msa1067320 | Msa1112890 | 0.843447 | 1.393407e-58 | -8.615850e-47 |
| Msa1112890 | Msa1155990 | 0.979598 | 2.538935e-148 | -8.615850e-47 |
| Msa1112890 | Msa1259160 | 0.808314 | 3.291143e-50 | -8.615850e-47 |
| Msa1112890 | Msa1299650 | 0.807435 | 5.061682e-50 | -8.615850e-47 |
| Msa0596630 | Msa1112890 | 0.827920 | 1.198237e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112890 | MtrunA17_Chr7g0248451 | 87.578 | 483 | 15 | 3 | 1 | 438 | 1 | 483 | 0.0 | 833 |
| Msa1112890 | MtrunA17_Chr8g0348491 | 69.937 | 479 | 99 | 3 | 1 | 434 | 1 | 479 | 0.0 | 672 |
| Msa1112890 | MtrunA17_Chr8g0387391 | 66.667 | 450 | 105 | 3 | 32 | 436 | 21 | 470 | 0.0 | 617 |
| Msa1112890 | MtrunA17_Chr1g0202641 | 58.442 | 462 | 142 | 5 | 17 | 432 | 16 | 473 | 0.0 | 545 |
| Msa1112890 | MtrunA17_Chr1g0202641 | 58.009 | 462 | 145 | 6 | 17 | 432 | 516 | 974 | 0.0 | 540 |
| Msa1112890 | MtrunA17_Chr1g0202651 | 59.152 | 448 | 133 | 5 | 31 | 432 | 30 | 473 | 0.0 | 530 |
| Msa1112890 | MtrunA17_Chr1g0202621 | 55.054 | 465 | 153 | 6 | 14 | 432 | 6 | 460 | 0.0 | 513 |
| Msa1112890 | MtrunA17_Chr7g0255311 | 56.250 | 464 | 143 | 7 | 16 | 431 | 32 | 483 | 6.79e-180 | 511 |
| Msa1112890 | MtrunA17_Chr7g0270821 | 45.270 | 444 | 186 | 6 | 16 | 413 | 12 | 444 | 9.09e-128 | 377 |
| Msa1112890 | MtrunA17_Chr1g0193961 | 46.210 | 409 | 170 | 6 | 51 | 413 | 39 | 443 | 3.38e-124 | 369 |
| Msa1112890 | MtrunA17_Chr3g0095221 | 41.913 | 439 | 205 | 6 | 21 | 413 | 13 | 447 | 1.93e-108 | 327 |
| Msa1112890 | MtrunA17_Chr4g0067811 | 42.640 | 394 | 180 | 4 | 51 | 399 | 36 | 428 | 8.44e-108 | 326 |
| Msa1112890 | MtrunA17_Chr2g0295241 | 41.310 | 397 | 187 | 4 | 51 | 402 | 33 | 428 | 3.68e-107 | 324 |
| Msa1112890 | MtrunA17_Chr4g0070281 | 41.397 | 401 | 187 | 6 | 49 | 402 | 69 | 468 | 3.84e-102 | 313 |
| Msa1112890 | MtrunA17_Chr3g0130251 | 38.940 | 434 | 216 | 5 | 19 | 406 | 40 | 470 | 6.43e-100 | 306 |
| Msa1112890 | MtrunA17_Chr2g0301091 | 38.964 | 444 | 219 | 8 | 13 | 406 | 15 | 456 | 2.40e-99 | 305 |
| Msa1112890 | MtrunA17_Chr5g0442221 | 42.857 | 413 | 180 | 8 | 51 | 413 | 40 | 446 | 2.11e-95 | 294 |
| Msa1112890 | MtrunA17_Chr2g0319881 | 57.895 | 114 | 42 | 1 | 51 | 158 | 39 | 152 | 1.45e-38 | 137 |
| Msa1112890 | MtrunA17_Chr6g0468871 | 70.130 | 77 | 23 | 0 | 203 | 279 | 22 | 98 | 1.33e-33 | 121 |
| Msa1112890 | MtrunA17_Chr6g0468861 | 55.224 | 67 | 30 | 0 | 305 | 371 | 3 | 69 | 1.43e-19 | 82.8 |
| Msa1112890 | MtrunA17_Chr2g0303941 | 25.897 | 390 | 223 | 14 | 52 | 399 | 25 | 390 | 1.95e-18 | 86.7 |
| Msa1112890 | MtrunA17_Chr5g0418411 | 26.797 | 306 | 159 | 10 | 60 | 321 | 34 | 318 | 1.86e-15 | 77.8 |
| Msa1112890 | MtrunA17_Chr8g0348981 | 22.194 | 392 | 232 | 10 | 56 | 398 | 28 | 395 | 2.10e-13 | 71.6 |
| Msa1112890 | MtrunA17_Chr4g0043431 | 23.684 | 380 | 238 | 14 | 56 | 399 | 36 | 399 | 1.70e-12 | 68.9 |
| Msa1112890 | MtrunA17_Chr3g0121891 | 27.016 | 248 | 155 | 8 | 160 | 399 | 165 | 394 | 4.67e-12 | 67.4 |
| Msa1112890 | MtrunA17_Chr2g0332801 | 24.291 | 247 | 169 | 5 | 160 | 399 | 193 | 428 | 5.19e-12 | 67.4 |
| Msa1112890 | MtrunA17_Chr4g0043661 | 24.314 | 255 | 167 | 7 | 155 | 396 | 148 | 389 | 2.25e-11 | 65.1 |
| Msa1112890 | MtrunA17_Chr3g0121881 | 26.437 | 261 | 147 | 11 | 159 | 399 | 163 | 398 | 5.63e-11 | 63.9 |
| Msa1112890 | MtrunA17_Chr8g0337571 | 28.175 | 252 | 150 | 10 | 159 | 399 | 156 | 387 | 6.86e-11 | 63.9 |
| Msa1112890 | MtrunA17_Chr8g0336481 | 26.531 | 196 | 118 | 5 | 159 | 348 | 79 | 254 | 8.73e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112890 | AT3G61490.4 | 61.006 | 477 | 132 | 5 | 12 | 434 | 112 | 588 | 0.0 | 599 |
| Msa1112890 | AT3G61490.5 | 61.006 | 477 | 132 | 5 | 12 | 434 | 14 | 490 | 0.0 | 596 |
| Msa1112890 | AT3G61490.2 | 63.077 | 455 | 117 | 4 | 31 | 434 | 21 | 475 | 0.0 | 595 |
| Msa1112890 | AT3G61490.3 | 63.077 | 455 | 117 | 4 | 31 | 434 | 21 | 475 | 0.0 | 595 |
| Msa1112890 | AT3G61490.1 | 63.077 | 455 | 117 | 4 | 31 | 434 | 21 | 475 | 0.0 | 595 |
| Msa1112890 | AT4G23500.1 | 59.637 | 441 | 132 | 4 | 43 | 438 | 56 | 495 | 0.0 | 538 |
| Msa1112890 | AT3G48950.1 | 56.550 | 458 | 152 | 5 | 20 | 430 | 10 | 467 | 0.0 | 532 |
| Msa1112890 | AT2G23900.1 | 52.878 | 469 | 171 | 6 | 11 | 431 | 10 | 476 | 1.04e-175 | 500 |
| Msa1112890 | AT3G62110.1 | 42.959 | 419 | 188 | 5 | 51 | 418 | 39 | 457 | 2.10e-122 | 364 |
| Msa1112890 | AT3G62110.2 | 42.959 | 419 | 188 | 5 | 51 | 418 | 39 | 457 | 2.10e-122 | 364 |
| Msa1112890 | AT4G23820.1 | 41.685 | 451 | 209 | 6 | 10 | 415 | 3 | 444 | 6.92e-114 | 342 |
| Msa1112890 | AT4G33440.1 | 43.842 | 406 | 178 | 6 | 56 | 415 | 73 | 474 | 9.53e-103 | 314 |
| Msa1112890 | AT5G41870.1 | 40.807 | 446 | 207 | 10 | 17 | 414 | 10 | 446 | 7.28e-100 | 306 |
| Msa1112890 | AT3G42950.1 | 40.863 | 394 | 185 | 6 | 56 | 402 | 67 | 459 | 1.92e-95 | 295 |
| Msa1112890 | AT3G16850.1 | 39.750 | 400 | 193 | 4 | 48 | 402 | 33 | 429 | 4.05e-95 | 294 |
| Msa1112890 | AT5G49215.2 | 38.734 | 395 | 196 | 4 | 51 | 399 | 37 | 431 | 3.39e-90 | 281 |
| Msa1112890 | AT5G49215.1 | 38.734 | 395 | 196 | 4 | 51 | 399 | 39 | 433 | 4.13e-90 | 281 |
| Msa1112890 | AT1G19170.1 | 38.265 | 392 | 193 | 7 | 57 | 400 | 89 | 479 | 1.11e-89 | 281 |
| Msa1112890 | AT3G06770.5 | 36.721 | 433 | 226 | 5 | 12 | 399 | 3 | 432 | 2.18e-89 | 279 |
| Msa1112890 | AT3G06770.2 | 36.364 | 429 | 227 | 4 | 16 | 399 | 4 | 431 | 5.57e-89 | 278 |
| Msa1112890 | AT3G06770.1 | 36.438 | 365 | 186 | 4 | 83 | 402 | 2 | 365 | 1.29e-73 | 236 |
| Msa1112890 | AT3G06770.3 | 36.438 | 365 | 186 | 4 | 83 | 402 | 2 | 365 | 1.29e-73 | 236 |
| Msa1112890 | AT3G06770.4 | 33.432 | 338 | 183 | 4 | 104 | 402 | 13 | 347 | 3.78e-57 | 192 |
| Msa1112890 | AT5G17200.1 | 26.567 | 335 | 176 | 11 | 9 | 305 | 1 | 303 | 1.26e-18 | 88.2 |
| Msa1112890 | AT3G07970.1 | 24.194 | 248 | 170 | 5 | 159 | 399 | 202 | 438 | 1.59e-12 | 69.3 |
| Msa1112890 | AT2G41850.1 | 24.112 | 394 | 223 | 14 | 54 | 400 | 67 | 431 | 7.99e-12 | 67.4 |
| Msa1112890 | AT5G27530.1 | 25.830 | 271 | 161 | 11 | 60 | 305 | 58 | 313 | 8.71e-12 | 67.4 |
| Msa1112890 | AT2G43860.1 | 24.088 | 274 | 177 | 11 | 135 | 399 | 146 | 397 | 4.51e-11 | 64.7 |
| Msa1112890 | AT5G14650.1 | 23.650 | 389 | 246 | 13 | 56 | 408 | 52 | 425 | 6.46e-11 | 64.3 |
Find 101 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTACTCTCAGCTCTTTC+TGG | 0.103596 | 7_3:-58890432 | None:intergenic |
| GCAATACAAATTCCCTTAAA+AGG | 0.142744 | 7_3:-58893749 | None:intergenic |
| ATAAGTTTGGAATTTGATTT+TGG | 0.176122 | 7_3:-58890189 | None:intergenic |
| AGTGCTTCATTGACAGATTT+TGG | 0.197810 | 7_3:+58890510 | Msa1112890:CDS |
| GAGTTTACCTATTGATAATT+TGG | 0.201553 | 7_3:+58893925 | Msa1112890:CDS |
| TAGTCACTTTACTCTCTATT+TGG | 0.208391 | 7_3:+58890671 | Msa1112890:CDS |
| GAAGACTGCTACATAGTTTC+TGG | 0.221963 | 7_3:+58893299 | Msa1112890:CDS |
| AGATTCAGAAGCTTCATATT+TGG | 0.225619 | 7_3:+58891972 | Msa1112890:CDS |
| TACTAGTTTATGGAACTTAA+TGG | 0.252132 | 7_3:+58894045 | Msa1112890:three_prime_UTR |
| GCAATCTCAGGCAAAGCATT+AGG | 0.278588 | 7_3:-58893653 | None:intergenic |
| GATGAGTATGGCATCAAATT+TGG | 0.279744 | 7_3:+58893353 | Msa1112890:CDS |
| CATTCCATGATGGGGAATTA+AGG | 0.295292 | 7_3:-58892861 | None:intergenic |
| TGTATGTTCCAGCAGGAAAA+TGG | 0.341261 | 7_3:+58890625 | Msa1112890:CDS |
| TTAAGCTCCAAATTATCAAT+AGG | 0.350545 | 7_3:-58893932 | None:intergenic |
| TGTGATCTGTTGCCTGATCA+AGG | 0.381355 | 7_3:+58893866 | Msa1112890:CDS |
| CAATCTCAGGCAAAGCATTA+GGG | 0.397084 | 7_3:-58893652 | None:intergenic |
| ACAGCCATTCGAACAGAATC+AGG | 0.401749 | 7_3:+58893494 | Msa1112890:CDS |
| TTACCATGCATACTATGAAA+TGG | 0.406911 | 7_3:+58893579 | Msa1112890:CDS |
| ATGTAATGTAGTTACTGTTA+AGG | 0.408424 | 7_3:+58893978 | Msa1112890:exon |
| GATCAAGGGCCTGAGAAAAT+CGG | 0.410347 | 7_3:+58893881 | Msa1112890:CDS |
| GGAGAGTTAGATTTGAGACT+TGG | 0.415256 | 7_3:-58892840 | None:intergenic |
| ATCAAGGGCCTGAGAAAATC+GGG | 0.416111 | 7_3:+58893882 | Msa1112890:CDS |
| TCTTGTGGAAAACTCACATA+AGG | 0.416981 | 7_3:+58890229 | Msa1112890:CDS |
| CAATACAAATTCCCTTAAAA+GGG | 0.421496 | 7_3:-58893748 | None:intergenic |
| TGCTCTCTTTGTGGTGACAC+TGG | 0.434597 | 7_3:+58890404 | Msa1112890:CDS |
| ATTAGTCACCTAAGTCAGTA+TGG | 0.440976 | 7_3:+58890582 | Msa1112890:CDS |
| TCAATAGGTAAACTCTCTGC+TGG | 0.453641 | 7_3:-58893917 | None:intergenic |
| AAGAGTGGATGGGATGAGTA+TGG | 0.455331 | 7_3:+58893341 | Msa1112890:CDS |
| GACACTAGGGATGGCTGTTA+AGG | 0.457483 | 7_3:+58893778 | Msa1112890:CDS |
| ACCATAGCAGCTAGGTTTCA+AGG | 0.460046 | 7_3:+58893713 | Msa1112890:CDS |
| AAGACTGCTACATAGTTTCT+GGG | 0.462202 | 7_3:+58893300 | Msa1112890:CDS |
| TAGTTGATATTTGCAATCTC+AGG | 0.469997 | 7_3:-58893665 | None:intergenic |
| TACCATGCATACTATGAAAT+GGG | 0.473494 | 7_3:+58893580 | Msa1112890:CDS |
| TCGAATGGCTGTGATGTCTT+CGG | 0.474760 | 7_3:-58893483 | None:intergenic |
| GGGTTGATACCATCAGTGTT+AGG | 0.479630 | 7_3:-58893041 | None:intergenic |
| TTCTTAGAATGAAGCTCTTG+TGG | 0.485346 | 7_3:+58890214 | Msa1112890:exon |
| TGTATTGCAAACGTGACACT+AGG | 0.504435 | 7_3:+58893764 | Msa1112890:CDS |
| TTCAGTGCAACCATTGCCTT+AGG | 0.506121 | 7_3:+58893425 | Msa1112890:CDS |
| TAGTGGTACCTGCTGTAAAC+AGG | 0.506759 | 7_3:-58892889 | None:intergenic |
| CTCTCCTTAATTCCCCATCA+TGG | 0.508913 | 7_3:+58892857 | Msa1112890:CDS |
| TCCTTGAAACCTAGCTGCTA+TGG | 0.510139 | 7_3:-58893714 | None:intergenic |
| CCTCTACCGTATGATGGTAA+TGG | 0.510333 | 7_3:-58891930 | None:intergenic |
| CAGGATGAACATTCCATGAT+GGG | 0.511992 | 7_3:-58892870 | None:intergenic |
| ATCAAAACAGCTGTTGGTAG+AGG | 0.513531 | 7_3:+58893524 | Msa1112890:CDS |
| CTTGAGAACCATACTGACTT+AGG | 0.516248 | 7_3:-58890590 | None:intergenic |
| TCCTGACATCTCACTTCCTA+AGG | 0.516582 | 7_3:-58893441 | None:intergenic |
| GACACCTGATTCTGTTCGAA+TGG | 0.523626 | 7_3:-58893498 | None:intergenic |
| GATGGTAATGGTTCAAGCGC+AGG | 0.530658 | 7_3:-58891918 | None:intergenic |
| TGGACATGCACTGATATTGA+AGG | 0.532216 | 7_3:+58893815 | Msa1112890:CDS |
| TGGAAATACATCTAATACAA+AGG | 0.532307 | 7_3:+58890545 | Msa1112890:CDS |
| TCTCTTCCTCTACCGTATGA+TGG | 0.537275 | 7_3:-58891936 | None:intergenic |
| GCCTTAGGAAGTGAGATGTC+AGG | 0.537657 | 7_3:+58893440 | Msa1112890:CDS |
| AAGCTTCTGAATCTTCCTGC+TGG | 0.539199 | 7_3:-58891963 | None:intergenic |
| ACAGGATGAACATTCCATGA+TGG | 0.539320 | 7_3:-58892871 | None:intergenic |
| GTGATCTGTTGCCTGATCAA+GGG | 0.542192 | 7_3:+58893867 | Msa1112890:CDS |
| AGAGGAAGAGATGCACCAGC+AGG | 0.542607 | 7_3:+58891948 | Msa1112890:CDS |
| CTCACGGATGTTATTGTCAC+AGG | 0.543826 | 7_3:+58892002 | Msa1112890:CDS |
| GTGTTGCTGTGAAGAGTGGA+TGG | 0.544315 | 7_3:+58893330 | Msa1112890:CDS |
| TGCCCATTTCATAGTATGCA+TGG | 0.547287 | 7_3:-58893582 | None:intergenic |
| CCAGCAGGAAAATGGCTCAC+TGG | 0.548013 | 7_3:+58890633 | Msa1112890:CDS |
| ATGTTCATCCTGTTTACAGC+AGG | 0.549806 | 7_3:+58892881 | Msa1112890:CDS |
| AAAACAGCTGTTGGTAGAGG+AGG | 0.553170 | 7_3:+58893527 | Msa1112890:CDS |
| CTAAGTCAGTATGGTTCTCA+AGG | 0.555173 | 7_3:+58890591 | Msa1112890:CDS |
| ATCTCATCTCCTAACACTGA+TGG | 0.557144 | 7_3:+58893032 | Msa1112890:CDS |
| AAGGCAATGGTTGCACTGAA+TGG | 0.560248 | 7_3:-58893422 | None:intergenic |
| TCTCAGCTGTATGTTCCAGC+AGG | 0.565650 | 7_3:+58890618 | Msa1112890:CDS |
| AAATGGGCATTTAAGATGAC+TGG | 0.567772 | 7_3:+58893596 | Msa1112890:CDS |
| AGTATGGCATCAAATTTGGC+AGG | 0.573064 | 7_3:+58893357 | Msa1112890:CDS |
| GACTGTGTTGCTGTGAAGAG+TGG | 0.579759 | 7_3:+58893326 | Msa1112890:CDS |
| TCAGTGTTAGGAGATGAGAT+AGG | 0.579789 | 7_3:-58893029 | None:intergenic |
| GTCAGAATCAAAACAGCTGT+TGG | 0.583176 | 7_3:+58893518 | Msa1112890:CDS |
| CAATAGGTAAACTCTCTGCT+GGG | 0.588902 | 7_3:-58893916 | None:intergenic |
| CCATTACCATCATACGGTAG+AGG | 0.588919 | 7_3:+58891930 | Msa1112890:CDS |
| CATCTCACTTCCTAAGGCAA+TGG | 0.591067 | 7_3:-58893435 | None:intergenic |
| CTTGAACCATTACCATCATA+CGG | 0.596573 | 7_3:+58891924 | Msa1112890:CDS |
| TGGCTGTTAAGGCCAAGAAA+AGG | 0.599659 | 7_3:+58893789 | Msa1112890:CDS |
| ACTCTCTGCTGGGAAATCAC+AGG | 0.604357 | 7_3:-58893906 | None:intergenic |
| CTTGTGGAAAACTCACATAA+GGG | 0.605147 | 7_3:+58890230 | Msa1112890:CDS |
| ACAACTTCATTTGAGTACAA+TGG | 0.606953 | 7_3:+58890468 | Msa1112890:CDS |
| GGCAACAGATCACAAGGCGG+AGG | 0.607948 | 7_3:-58893857 | None:intergenic |
| TACAGCAACATTATTATACA+AGG | 0.609021 | 7_3:+58892990 | Msa1112890:intron |
| TTAAGGCCAAGAAAAGGTCA+TGG | 0.613134 | 7_3:+58893795 | Msa1112890:CDS |
| AAACAGCTGTTGGTAGAGGA+GGG | 0.626382 | 7_3:+58893528 | Msa1112890:CDS |
| AGAATGTTACCATAGCAGCT+AGG | 0.630037 | 7_3:+58893705 | Msa1112890:CDS |
| GTATTGCAAACGTGACACTA+GGG | 0.632461 | 7_3:+58893765 | Msa1112890:CDS |
| TGCAAACGTGACACTAGGGA+TGG | 0.639488 | 7_3:+58893769 | Msa1112890:CDS |
| TATCAACTATAGAGATGTCG+TGG | 0.647148 | 7_3:+58893679 | Msa1112890:CDS |
| TGATCAGGCAACAGATCACA+AGG | 0.647899 | 7_3:-58893863 | None:intergenic |
| TTAGGAAGTGAGATGTCAGG+AGG | 0.656161 | 7_3:+58893443 | Msa1112890:CDS |
| CATATTTGGAACAAACCTCA+CGG | 0.657666 | 7_3:+58891986 | Msa1112890:CDS |
| AGGATGAACATTCCATGATG+GGG | 0.669694 | 7_3:-58892869 | None:intergenic |
| AGTCAGTATGGTTCTCAAGG+TGG | 0.672780 | 7_3:+58890594 | Msa1112890:CDS |
| AGACTGCTACATAGTTTCTG+GGG | 0.678381 | 7_3:+58893301 | Msa1112890:CDS |
| TCAAGGGCCTGAGAAAATCG+GGG | 0.683370 | 7_3:+58893883 | Msa1112890:CDS |
| GGACATGCACTGATATTGAA+GGG | 0.687510 | 7_3:+58893816 | Msa1112890:CDS |
| TGGTAGAGGAGGGTATGTGA+AGG | 0.693483 | 7_3:+58893538 | Msa1112890:CDS |
| TAGGAAGTGAGATGTCAGGA+GGG | 0.694750 | 7_3:+58893444 | Msa1112890:CDS |
| TGTTGCTGTGAAGAGTGGAT+GGG | 0.695217 | 7_3:+58893331 | Msa1112890:CDS |
| TAATGTAGGATATCACTGAG+TGG | 0.726207 | 7_3:+58891895 | Msa1112890:intron |
| CTGTGACAATAACATCCGTG+AGG | 0.748176 | 7_3:-58892001 | None:intergenic |
| TCAGGCAACAGATCACAAGG+CGG | 0.811321 | 7_3:-58893860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATCAAACATTTT+AGG | + | chr7_3:58891036-58891055 | Msa1112890:intron | 10.0% |
| !! | TTGTATTAATAAAATAATGT+AGG | + | chr7_3:58891881-58891900 | Msa1112890:intron | 10.0% |
| !!! | TTTCTAACTATTTATTTTCA+TGG | + | chr7_3:58890347-58890366 | Msa1112890:intron | 15.0% |
| !! | AATGTTTGATAAAAAATTGT+GGG | - | chr7_3:58891034-58891053 | None:intergenic | 15.0% |
| !! | AAATGTTTGATAAAAAATTG+TGG | - | chr7_3:58891035-58891054 | None:intergenic | 15.0% |
| !!! | TTTTCTTGATATTCTTAAAT+TGG | - | chr7_3:58891452-58891471 | None:intergenic | 15.0% |
| !!! | GTTAATCATACATTTTTATT+GGG | - | chr7_3:58893102-58893121 | None:intergenic | 15.0% |
| !!! | GAATTTGATTTTGGTATATT+TGG | - | chr7_3:58890183-58890202 | None:intergenic | 20.0% |
| !!! | ATAAGTTTGGAATTTGATTT+TGG | - | chr7_3:58890192-58890211 | None:intergenic | 20.0% |
| !!! | CATTCTAAGAAAAATAAGTT+TGG | - | chr7_3:58890205-58890224 | None:intergenic | 20.0% |
| !! | GAATAAAATATGAGAATGAT+AGG | - | chr7_3:58890287-58890306 | None:intergenic | 20.0% |
| !!! | CATTAATTTTTACTCCATTT+TGG | + | chr7_3:58890729-58890748 | Msa1112890:intron | 20.0% |
| !! | ATGTTTGATAAAAAATTGTG+GGG | - | chr7_3:58891033-58891052 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTAAAACTCTC+CGG | + | chr7_3:58891101-58891120 | Msa1112890:intron | 20.0% |
| !! | AGTTGGAAGAAAATTAAAAA+CGG | - | chr7_3:58891292-58891311 | None:intergenic | 20.0% |
| !! | TATACACACTATAATTTAGT+TGG | - | chr7_3:58891309-58891328 | None:intergenic | 20.0% |
| !! | AATTATAGTGTGTATATGTT+TGG | + | chr7_3:58891313-58891332 | Msa1112890:intron | 20.0% |
| !! | AAGAATATCAAGAAAATAGA+TGG | + | chr7_3:58891456-58891475 | Msa1112890:intron | 20.0% |
| !! | ATAGCAAAAGACAAATTTAA+CGG | - | chr7_3:58891713-58891732 | None:intergenic | 20.0% |
| !!! | GATTTTGAGAAAATTAGTTA+TGG | + | chr7_3:58892152-58892171 | Msa1112890:intron | 20.0% |
| !!! | GATTTTGAACAATTAGTTTA+AGG | + | chr7_3:58892229-58892248 | Msa1112890:intron | 20.0% |
| !!! | TATAATGGCAAATTGTATTT+TGG | - | chr7_3:58892476-58892495 | None:intergenic | 20.0% |
| !!! | TGCCATTATAGATAAATTTT+AGG | + | chr7_3:58892486-58892505 | Msa1112890:intron | 20.0% |
| !!! | GCCATTATAGATAAATTTTA+GGG | + | chr7_3:58892487-58892506 | Msa1112890:intron | 20.0% |
| !! | ACCCTAAAATTTATCTATAA+TGG | - | chr7_3:58892491-58892510 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAACTTCTACTTT+TGG | + | chr7_3:58892627-58892646 | Msa1112890:intron | 20.0% |
| !!! | CACAGTTGATATTAAAATTT+AGG | - | chr7_3:58892692-58892711 | None:intergenic | 20.0% |
| !!! | CGTTAATCATACATTTTTAT+TGG | - | chr7_3:58893103-58893122 | None:intergenic | 20.0% |
| !! | AATAATTTTTGCTCTCTTTG+TGG | + | chr7_3:58890395-58890414 | Msa1112890:CDS | 25.0% |
| ! | TGGAAATACATCTAATACAA+AGG | + | chr7_3:58890545-58890564 | Msa1112890:CDS | 25.0% |
| ! | TAGTTAATTAGTCACCAAAA+TGG | - | chr7_3:58890746-58890765 | None:intergenic | 25.0% |
| ! | TTCCTCATGAAAATTTACTA+TGG | + | chr7_3:58891124-58891143 | Msa1112890:intron | 25.0% |
| !! | TACCATAGTAAATTTTCATG+AGG | - | chr7_3:58891129-58891148 | None:intergenic | 25.0% |
| ! | ATTTACCTTTAGCTGAATTT+CGG | - | chr7_3:58891154-58891173 | None:intergenic | 25.0% |
| ! | TCAAGTGATTAATGAATTCA+CGG | + | chr7_3:58891410-58891429 | Msa1112890:intron | 25.0% |
| ! | AAGAAAATAGATGGTTATAG+AGG | + | chr7_3:58891465-58891484 | Msa1112890:intron | 25.0% |
| ! | AGAAAATAGATGGTTATAGA+GGG | + | chr7_3:58891466-58891485 | Msa1112890:intron | 25.0% |
| !! | TTTTTGTGAATCAAAGGTTT+AGG | - | chr7_3:58891622-58891641 | None:intergenic | 25.0% |
| !!! | AAGTTGTTTTTGTGAATCAA+AGG | - | chr7_3:58891628-58891647 | None:intergenic | 25.0% |
| !!! | GAATAGGCTATGTTTTTTTT+TGG | - | chr7_3:58892111-58892130 | None:intergenic | 25.0% |
| ! | TGAGTTAAGTTTATTGATGT+CGG | - | chr7_3:58892284-58892303 | None:intergenic | 25.0% |
| ! | AACATAAGTTCAATCAAGTA+TGG | - | chr7_3:58892808-58892827 | None:intergenic | 25.0% |
| !! | CAGTCTTTAAAAGTAAAAGA+GGG | - | chr7_3:58892947-58892966 | None:intergenic | 25.0% |
| !! | ACAGTCTTTAAAAGTAAAAG+AGG | - | chr7_3:58892948-58892967 | None:intergenic | 25.0% |
| ! | TGTATAATAATGTTGCTGTA+TGG | - | chr7_3:58892990-58893009 | None:intergenic | 25.0% |
| ! | TACAGCAACATTATTATACA+AGG | + | chr7_3:58892990-58893009 | Msa1112890:intron | 25.0% |
| !! | CTTTTCTGTTAGATTATGTT+TGG | - | chr7_3:58893159-58893178 | None:intergenic | 25.0% |
| ! | AGAATCTAACATCAACATAA+AGG | - | chr7_3:58893261-58893280 | None:intergenic | 25.0% |
| ! | CAATACAAATTCCCTTAAAA+GGG | - | chr7_3:58893751-58893770 | None:intergenic | 25.0% |
| !! | GAGTTTACCTATTGATAATT+TGG | + | chr7_3:58893925-58893944 | Msa1112890:CDS | 25.0% |
| ! | TTAAGCTCCAAATTATCAAT+AGG | - | chr7_3:58893935-58893954 | None:intergenic | 25.0% |
| ! | ATGTAATGTAGTTACTGTTA+AGG | + | chr7_3:58893978-58893997 | Msa1112890:exon | 25.0% |
| !!! | CTTTTTTCTCTACTAGTTTA+TGG | + | chr7_3:58894035-58894054 | Msa1112890:three_prime_UTR | 25.0% |
| !! | TACTAGTTTATGGAACTTAA+TGG | + | chr7_3:58894045-58894064 | Msa1112890:three_prime_UTR | 25.0% |
| ACAACTTCATTTGAGTACAA+TGG | + | chr7_3:58890468-58890487 | Msa1112890:CDS | 30.0% | |
| ! | TAGTCACTTTACTCTCTATT+TGG | + | chr7_3:58890671-58890690 | Msa1112890:CDS | 30.0% |
| ! | AACTATGAAGTACTCGAATT+TGG | + | chr7_3:58890761-58890780 | Msa1112890:intron | 30.0% |
| TTCAATGTAATCATATGCGT+CGG | - | chr7_3:58890823-58890842 | None:intergenic | 30.0% | |
| TGTCAGTATATGGACTTTAA+AGG | + | chr7_3:58890880-58890899 | Msa1112890:intron | 30.0% | |
| CTTAGCAAGTGTTTATTATG+TGG | + | chr7_3:58890931-58890950 | Msa1112890:intron | 30.0% | |
| ! | GGCTTTAACATAACAAGTTA+TGG | - | chr7_3:58890992-58891011 | None:intergenic | 30.0% |
| ! | AGTAAATTTTCATGAGGAAC+CGG | - | chr7_3:58891123-58891142 | None:intergenic | 30.0% |
| CTCACGTAAACTTAACTTTA+CGG | + | chr7_3:58891369-58891388 | Msa1112890:intron | 30.0% | |
| TAACTTTACGGTGAATCAAT+TGG | + | chr7_3:58891381-58891400 | Msa1112890:intron | 30.0% | |
| TATTGCTCTAATAGAAAGTG+AGG | - | chr7_3:58891558-58891577 | None:intergenic | 30.0% | |
| ! | TTCTGAGTGTGAAACATTTT+TGG | + | chr7_3:58891750-58891769 | Msa1112890:intron | 30.0% |
| AGATTCAGAAGCTTCATATT+TGG | + | chr7_3:58891972-58891991 | Msa1112890:CDS | 30.0% | |
| GTAAGATTAAAAAAACCGCA+AGG | + | chr7_3:58892358-58892377 | Msa1112890:intron | 30.0% | |
| ! | GTTCTACTTCTTCTAGAAAA+CGG | + | chr7_3:58892380-58892399 | Msa1112890:intron | 30.0% |
| ! | ATTTTCCCCTGTTAACAAAA+GGG | - | chr7_3:58892716-58892735 | None:intergenic | 30.0% |
| TGAAATGTGAATATACGCAT+TGG | - | chr7_3:58892915-58892934 | None:intergenic | 30.0% | |
| AAATCTTCAAATACTGACCT+GGG | - | chr7_3:58893064-58893083 | None:intergenic | 30.0% | |
| AAAATCTTCAAATACTGACC+TGG | - | chr7_3:58893065-58893084 | None:intergenic | 30.0% | |
| ACAATGCAACCAAAAAACTA+TGG | + | chr7_3:58893207-58893226 | Msa1112890:intron | 30.0% | |
| !!! | CAATCCAATCCATAGTTTTT+TGG | - | chr7_3:58893219-58893238 | None:intergenic | 30.0% |
| !! | CTGATTACTAGTTGTTTTGT+AGG | - | chr7_3:58893383-58893402 | None:intergenic | 30.0% |
| TTACCATGCATACTATGAAA+TGG | + | chr7_3:58893579-58893598 | Msa1112890:CDS | 30.0% | |
| TACCATGCATACTATGAAAT+GGG | + | chr7_3:58893580-58893599 | Msa1112890:CDS | 30.0% | |
| ! | TAGTTGATATTTGCAATCTC+AGG | - | chr7_3:58893668-58893687 | None:intergenic | 30.0% |
| ! | AATCTCTAATGACCCTTTTA+AGG | + | chr7_3:58893736-58893755 | Msa1112890:CDS | 30.0% |
| ! | ATCTCTAATGACCCTTTTAA+GGG | + | chr7_3:58893737-58893756 | Msa1112890:CDS | 30.0% |
| GCAATACAAATTCCCTTAAA+AGG | - | chr7_3:58893752-58893771 | None:intergenic | 30.0% | |
| TTCTTAGAATGAAGCTCTTG+TGG | + | chr7_3:58890214-58890233 | Msa1112890:exon | 35.0% | |
| TCTTGTGGAAAACTCACATA+AGG | + | chr7_3:58890229-58890248 | Msa1112890:CDS | 35.0% | |
| CTTGTGGAAAACTCACATAA+GGG | + | chr7_3:58890230-58890249 | Msa1112890:CDS | 35.0% | |
| TGATAGGTGATGAGGATAAA+GGG | - | chr7_3:58890271-58890290 | None:intergenic | 35.0% | |
| ATGATAGGTGATGAGGATAA+AGG | - | chr7_3:58890272-58890291 | None:intergenic | 35.0% | |
| TATGAGAATGATAGGTGATG+AGG | - | chr7_3:58890279-58890298 | None:intergenic | 35.0% | |
| !!! | CATGGCTATGTTGATTTTAC+AGG | + | chr7_3:58890365-58890384 | Msa1112890:intron | 35.0% |
| ! | AGTGCTTCATTGACAGATTT+TGG | + | chr7_3:58890510-58890529 | Msa1112890:CDS | 35.0% |
| ATTAGTCACCTAAGTCAGTA+TGG | + | chr7_3:58890582-58890601 | Msa1112890:CDS | 35.0% | |
| GTAATCCGAAATTCAGCTAA+AGG | + | chr7_3:58891146-58891165 | Msa1112890:intron | 35.0% | |
| CGTAAAGTTAAGTTTACGTG+AGG | - | chr7_3:58891371-58891390 | None:intergenic | 35.0% | |
| ! | ATTTAACGGACCACACATTA+TGG | - | chr7_3:58891699-58891718 | None:intergenic | 35.0% |
| TAATGTAGGATATCACTGAG+TGG | + | chr7_3:58891895-58891914 | Msa1112890:intron | 35.0% | |
| CTTGAACCATTACCATCATA+CGG | + | chr7_3:58891924-58891943 | Msa1112890:CDS | 35.0% | |
| ! | CATATTTGGAACAAACCTCA+CGG | + | chr7_3:58891986-58892005 | Msa1112890:CDS | 35.0% |
| GATGTTATTGTCACAGGTAT+GGG | + | chr7_3:58892008-58892027 | Msa1112890:intron | 35.0% | |
| ATGTTATTGTCACAGGTATG+GGG | + | chr7_3:58892009-58892028 | Msa1112890:intron | 35.0% | |
| ! | GTCAATCACTGTTAGTGTTT+TGG | + | chr7_3:58892404-58892423 | Msa1112890:intron | 35.0% |
| TTCCTTAACTTATGCCCTAA+GGG | + | chr7_3:58892650-58892669 | Msa1112890:intron | 35.0% | |
| !! | AATGTTAACTTGTGCCCTTA+GGG | - | chr7_3:58892667-58892686 | None:intergenic | 35.0% |
| !! | AAATGTTAACTTGTGCCCTT+AGG | - | chr7_3:58892668-58892687 | None:intergenic | 35.0% |
| ! | CATTTTCCCCTGTTAACAAA+AGG | - | chr7_3:58892717-58892736 | None:intergenic | 35.0% |
| ! | CTTTTGTTAACAGGGGAAAA+TGG | + | chr7_3:58892715-58892734 | Msa1112890:intron | 35.0% |
| GCAACCAAAAAACTATGGAT+TGG | + | chr7_3:58893212-58893231 | Msa1112890:intron | 35.0% | |
| AAGACTGCTACATAGTTTCT+GGG | + | chr7_3:58893300-58893319 | Msa1112890:CDS | 35.0% | |
| GATGAGTATGGCATCAAATT+TGG | + | chr7_3:58893353-58893372 | Msa1112890:CDS | 35.0% | |
| ! | AAATGGGCATTTAAGATGAC+TGG | + | chr7_3:58893596-58893615 | Msa1112890:CDS | 35.0% |
| TATCAACTATAGAGATGTCG+TGG | + | chr7_3:58893679-58893698 | Msa1112890:CDS | 35.0% | |
| TTTCTACTCTCAGCTCTTTC+TGG | - | chr7_3:58890435-58890454 | None:intergenic | 40.0% | |
| ! | GCTTCATTGACAGATTTTGG+TGG | + | chr7_3:58890513-58890532 | Msa1112890:CDS | 40.0% |
| !!! | TTGACAGATTTTGGTGGTGT+TGG | + | chr7_3:58890519-58890538 | Msa1112890:CDS | 40.0% |
| !! | CTTGAGAACCATACTGACTT+AGG | - | chr7_3:58890593-58890612 | None:intergenic | 40.0% |
| CTAAGTCAGTATGGTTCTCA+AGG | + | chr7_3:58890591-58890610 | Msa1112890:CDS | 40.0% | |
| TGTATGTTCCAGCAGGAAAA+TGG | + | chr7_3:58890625-58890644 | Msa1112890:CDS | 40.0% | |
| AATGAGATACCTGAGAAGCA+AGG | - | chr7_3:58890713-58890732 | None:intergenic | 40.0% | |
| TTATAGAGGGAATCACGTGA+GGG | + | chr7_3:58891479-58891498 | Msa1112890:intron | 40.0% | |
| GGATGTTATTGTCACAGGTA+TGG | + | chr7_3:58892007-58892026 | Msa1112890:intron | 40.0% | |
| CTAGAAGAAGTAGAACCTTG+CGG | - | chr7_3:58892376-58892395 | None:intergenic | 40.0% | |
| !! | GTATTTTGGACCACCTATGA+AGG | - | chr7_3:58892462-58892481 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr7_3:58892510-58892529 | Msa1112890:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr7_3:58892511-58892530 | Msa1112890:intron | 40.0% |
| !! | TTCCTTAACTTGTGCCCTAA+GGG | - | chr7_3:58892528-58892547 | None:intergenic | 40.0% |
| GTTCCTTAACTTATGCCCTA+AGG | + | chr7_3:58892649-58892668 | Msa1112890:intron | 40.0% | |
| ! | ACTGTGACCCTTTTGTTAAC+AGG | + | chr7_3:58892706-58892725 | Msa1112890:intron | 40.0% |
| ! | CTGTGACCCTTTTGTTAACA+GGG | + | chr7_3:58892707-58892726 | Msa1112890:intron | 40.0% |
| ! | TGTGACCCTTTTGTTAACAG+GGG | + | chr7_3:58892708-58892727 | Msa1112890:intron | 40.0% |
| AAATGCACCTTGACCATCTA+TGG | - | chr7_3:58892743-58892762 | None:intergenic | 40.0% | |
| ! | TAGATGGTCAAGGTGCATTT+TGG | + | chr7_3:58892743-58892762 | Msa1112890:intron | 40.0% |
| ! | GGAGAGTTAGATTTGAGACT+TGG | - | chr7_3:58892843-58892862 | None:intergenic | 40.0% |
| ! | CATTCCATGATGGGGAATTA+AGG | - | chr7_3:58892864-58892883 | None:intergenic | 40.0% |
| AGGATGAACATTCCATGATG+GGG | - | chr7_3:58892872-58892891 | None:intergenic | 40.0% | |
| CAGGATGAACATTCCATGAT+GGG | - | chr7_3:58892873-58892892 | None:intergenic | 40.0% | |
| ACAGGATGAACATTCCATGA+TGG | - | chr7_3:58892874-58892893 | None:intergenic | 40.0% | |
| ATGTTCATCCTGTTTACAGC+AGG | + | chr7_3:58892881-58892900 | Msa1112890:CDS | 40.0% | |
| ! | GTGAATATACGCATTGGTAG+TGG | - | chr7_3:58892909-58892928 | None:intergenic | 40.0% |
| TCAGTGTTAGGAGATGAGAT+AGG | - | chr7_3:58893032-58893051 | None:intergenic | 40.0% | |
| ATCTCATCTCCTAACACTGA+TGG | + | chr7_3:58893032-58893051 | Msa1112890:CDS | 40.0% | |
| GAAGACTGCTACATAGTTTC+TGG | + | chr7_3:58893299-58893318 | Msa1112890:CDS | 40.0% | |
| AGACTGCTACATAGTTTCTG+GGG | + | chr7_3:58893301-58893320 | Msa1112890:CDS | 40.0% | |
| AGTATGGCATCAAATTTGGC+AGG | + | chr7_3:58893357-58893376 | Msa1112890:CDS | 40.0% | |
| GTCAGAATCAAAACAGCTGT+TGG | + | chr7_3:58893518-58893537 | Msa1112890:CDS | 40.0% | |
| ! | ATCAAAACAGCTGTTGGTAG+AGG | + | chr7_3:58893524-58893543 | Msa1112890:CDS | 40.0% |
| TGCCCATTTCATAGTATGCA+TGG | - | chr7_3:58893585-58893604 | None:intergenic | 40.0% | |
| ! | CAATCTCAGGCAAAGCATTA+GGG | - | chr7_3:58893655-58893674 | None:intergenic | 40.0% |
| AGAATGTTACCATAGCAGCT+AGG | + | chr7_3:58893705-58893724 | Msa1112890:CDS | 40.0% | |
| TGTATTGCAAACGTGACACT+AGG | + | chr7_3:58893764-58893783 | Msa1112890:CDS | 40.0% | |
| GTATTGCAAACGTGACACTA+GGG | + | chr7_3:58893765-58893784 | Msa1112890:CDS | 40.0% | |
| TTAAGGCCAAGAAAAGGTCA+TGG | + | chr7_3:58893795-58893814 | Msa1112890:CDS | 40.0% | |
| ! | TGGACATGCACTGATATTGA+AGG | + | chr7_3:58893815-58893834 | Msa1112890:CDS | 40.0% |
| ! | GGACATGCACTGATATTGAA+GGG | + | chr7_3:58893816-58893835 | Msa1112890:CDS | 40.0% |
| CAATAGGTAAACTCTCTGCT+GGG | - | chr7_3:58893919-58893938 | None:intergenic | 40.0% | |
| TCAATAGGTAAACTCTCTGC+TGG | - | chr7_3:58893920-58893939 | None:intergenic | 40.0% | |
| !!! | GATTTTGGTGGTGTTGGAGA+TGG | + | chr7_3:58890525-58890544 | Msa1112890:CDS | 45.0% |
| AGTCAGTATGGTTCTCAAGG+TGG | + | chr7_3:58890594-58890613 | Msa1112890:CDS | 45.0% | |
| !! | TACTCGAATTTGGTGTGTCC+TGG | + | chr7_3:58890771-58890790 | Msa1112890:intron | 45.0% |
| ! | GTAATCATATGCGTCGGTGT+GGG | - | chr7_3:58890817-58890836 | None:intergenic | 45.0% |
| ! | TGTAATCATATGCGTCGGTG+TGG | - | chr7_3:58890818-58890837 | None:intergenic | 45.0% |
| GGGTAGCTGCATCTTGAAAA+GGG | - | chr7_3:58891013-58891032 | None:intergenic | 45.0% | |
| GTTATAGAGGGAATCACGTG+AGG | + | chr7_3:58891478-58891497 | Msa1112890:intron | 45.0% | |
| CCTGATTGGTGTGTGAATGT+AGG | - | chr7_3:58891676-58891695 | None:intergenic | 45.0% | |
| CCTACATTCACACACCAATC+AGG | + | chr7_3:58891673-58891692 | Msa1112890:intron | 45.0% | |
| ACCAATCAGGCCATAATGTG+TGG | + | chr7_3:58891686-58891705 | Msa1112890:intron | 45.0% | |
| ACCACACATTATGGCCTGAT+TGG | - | chr7_3:58891690-58891709 | None:intergenic | 45.0% | |
| CCTCTACCGTATGATGGTAA+TGG | - | chr7_3:58891933-58891952 | None:intergenic | 45.0% | |
| CCATTACCATCATACGGTAG+AGG | + | chr7_3:58891930-58891949 | Msa1112890:CDS | 45.0% | |
| TCTCTTCCTCTACCGTATGA+TGG | - | chr7_3:58891939-58891958 | None:intergenic | 45.0% | |
| AAGCTTCTGAATCTTCCTGC+TGG | - | chr7_3:58891966-58891985 | None:intergenic | 45.0% | |
| CTGTGACAATAACATCCGTG+AGG | - | chr7_3:58892004-58892023 | None:intergenic | 45.0% | |
| CTCACGGATGTTATTGTCAC+AGG | + | chr7_3:58892002-58892021 | Msa1112890:CDS | 45.0% | |
| ACATAGCCTATTCGACGTTG+CGG | + | chr7_3:58892118-58892137 | Msa1112890:intron | 45.0% | |
| TTATCACCGCAACGTCGAAT+AGG | - | chr7_3:58892127-58892146 | None:intergenic | 45.0% | |
| GACAGTGACTTGACTGATGT+CGG | - | chr7_3:58892332-58892351 | None:intergenic | 45.0% | |
| ! | TTTTGGACCACCTATGAAGG+TGG | - | chr7_3:58892459-58892478 | None:intergenic | 45.0% |
| !! | GTTCCTTAACTTGTGCCCTA+AGG | - | chr7_3:58892529-58892548 | None:intergenic | 45.0% |
| TGCCCTTAGGGCATAAGTTA+AGG | - | chr7_3:58892655-58892674 | None:intergenic | 45.0% | |
| AATGGCACCATAGATGGTCA+AGG | + | chr7_3:58892733-58892752 | Msa1112890:intron | 45.0% | |
| ! | ATGGTCAAGGTGCATTTTGG+TGG | + | chr7_3:58892746-58892765 | Msa1112890:intron | 45.0% |
| CTCTCCTTAATTCCCCATCA+TGG | + | chr7_3:58892857-58892876 | Msa1112890:CDS | 45.0% | |
| TAGTGGTACCTGCTGTAAAC+AGG | - | chr7_3:58892892-58892911 | None:intergenic | 45.0% | |
| !! | GGGTTGATACCATCAGTGTT+AGG | - | chr7_3:58893044-58893063 | None:intergenic | 45.0% |
| AACACTGATGGTATCAACCC+AGG | + | chr7_3:58893044-58893063 | Msa1112890:intron | 45.0% | |
| TGTTGCTGTGAAGAGTGGAT+GGG | + | chr7_3:58893331-58893350 | Msa1112890:CDS | 45.0% | |
| AAGAGTGGATGGGATGAGTA+TGG | + | chr7_3:58893341-58893360 | Msa1112890:CDS | 45.0% | |
| AAGGCAATGGTTGCACTGAA+TGG | - | chr7_3:58893425-58893444 | None:intergenic | 45.0% | |
| TTCAGTGCAACCATTGCCTT+AGG | + | chr7_3:58893425-58893444 | Msa1112890:CDS | 45.0% | |
| CATCTCACTTCCTAAGGCAA+TGG | - | chr7_3:58893438-58893457 | None:intergenic | 45.0% | |
| TCCTGACATCTCACTTCCTA+AGG | - | chr7_3:58893444-58893463 | None:intergenic | 45.0% | |
| TTAGGAAGTGAGATGTCAGG+AGG | + | chr7_3:58893443-58893462 | Msa1112890:CDS | 45.0% | |
| TAGGAAGTGAGATGTCAGGA+GGG | + | chr7_3:58893444-58893463 | Msa1112890:CDS | 45.0% | |
| TCGAATGGCTGTGATGTCTT+CGG | - | chr7_3:58893486-58893505 | None:intergenic | 45.0% | |
| ACAGCCATTCGAACAGAATC+AGG | + | chr7_3:58893494-58893513 | Msa1112890:CDS | 45.0% | |
| GACACCTGATTCTGTTCGAA+TGG | - | chr7_3:58893501-58893520 | None:intergenic | 45.0% | |
| ! | AAAACAGCTGTTGGTAGAGG+AGG | + | chr7_3:58893527-58893546 | Msa1112890:CDS | 45.0% |
| ! | AAACAGCTGTTGGTAGAGGA+GGG | + | chr7_3:58893528-58893547 | Msa1112890:CDS | 45.0% |
| ! | GCAATCTCAGGCAAAGCATT+AGG | - | chr7_3:58893656-58893675 | None:intergenic | 45.0% |
| ACCATAGCAGCTAGGTTTCA+AGG | + | chr7_3:58893713-58893732 | Msa1112890:CDS | 45.0% | |
| TCCTTGAAACCTAGCTGCTA+TGG | - | chr7_3:58893717-58893736 | None:intergenic | 45.0% | |
| TGGCTGTTAAGGCCAAGAAA+AGG | + | chr7_3:58893789-58893808 | Msa1112890:CDS | 45.0% | |
| ! | GCATGTCCATGACCTTTTCT+TGG | - | chr7_3:58893804-58893823 | None:intergenic | 45.0% |
| TGATCAGGCAACAGATCACA+AGG | - | chr7_3:58893866-58893885 | None:intergenic | 45.0% | |
| TGTGATCTGTTGCCTGATCA+AGG | + | chr7_3:58893866-58893885 | Msa1112890:CDS | 45.0% | |
| GTGATCTGTTGCCTGATCAA+GGG | + | chr7_3:58893867-58893886 | Msa1112890:CDS | 45.0% | |
| ! | ATTTTCTCAGGCCCTTGATC+AGG | - | chr7_3:58893881-58893900 | None:intergenic | 45.0% |
| GATCAAGGGCCTGAGAAAAT+CGG | + | chr7_3:58893881-58893900 | Msa1112890:CDS | 45.0% | |
| ATCAAGGGCCTGAGAAAATC+GGG | + | chr7_3:58893882-58893901 | Msa1112890:CDS | 45.0% | |
| !!! | AAAAAAAAAAAAAAAGATTT+TGG | - | chr7_3:58891087-58891106 | None:intergenic | 5.0% |
| TGCTCTCTTTGTGGTGACAC+TGG | + | chr7_3:58890404-58890423 | Msa1112890:CDS | 50.0% | |
| TCTCAGCTGTATGTTCCAGC+AGG | + | chr7_3:58890618-58890637 | Msa1112890:CDS | 50.0% | |
| TGCTGTTCTCCTTGCTTCTC+AGG | + | chr7_3:58890701-58890720 | Msa1112890:intron | 50.0% | |
| GACGTCGACGTGTCAGTATA+TGG | + | chr7_3:58890870-58890889 | Msa1112890:intron | 50.0% | |
| GGGGTAGCTGCATCTTGAAA+AGG | - | chr7_3:58891014-58891033 | None:intergenic | 50.0% | |
| !! | GATGGTAATGGTTCAAGCGC+AGG | - | chr7_3:58891921-58891940 | None:intergenic | 50.0% |
| CCTATGAAGGTGGTACACTG+TGG | - | chr7_3:58892449-58892468 | None:intergenic | 50.0% | |
| CCACAGTGTACCACCTTCAT+AGG | + | chr7_3:58892446-58892465 | Msa1112890:intron | 50.0% | |
| CAGTGTACCACCTTCATAGG+TGG | + | chr7_3:58892449-58892468 | Msa1112890:intron | 50.0% | |
| TGCCCTTAGGGCACAAGTTA+AGG | + | chr7_3:58892523-58892542 | Msa1112890:intron | 50.0% | |
| GGGGAAAATGGCACCATAGA+TGG | + | chr7_3:58892727-58892746 | Msa1112890:intron | 50.0% | |
| ! | GACTGTGTTGCTGTGAAGAG+TGG | + | chr7_3:58893326-58893345 | Msa1112890:CDS | 50.0% |
| ! | GTGTTGCTGTGAAGAGTGGA+TGG | + | chr7_3:58893330-58893349 | Msa1112890:CDS | 50.0% |
| GCCTTAGGAAGTGAGATGTC+AGG | + | chr7_3:58893440-58893459 | Msa1112890:CDS | 50.0% | |
| ! | TGGTAGAGGAGGGTATGTGA+AGG | + | chr7_3:58893538-58893557 | Msa1112890:CDS | 50.0% |
| TGCAAACGTGACACTAGGGA+TGG | + | chr7_3:58893769-58893788 | Msa1112890:CDS | 50.0% | |
| GACACTAGGGATGGCTGTTA+AGG | + | chr7_3:58893778-58893797 | Msa1112890:CDS | 50.0% | |
| TCAGGCAACAGATCACAAGG+CGG | - | chr7_3:58893863-58893882 | None:intergenic | 50.0% | |
| TCAAGGGCCTGAGAAAATCG+GGG | + | chr7_3:58893883-58893902 | Msa1112890:CDS | 50.0% | |
| ACTCTCTGCTGGGAAATCAC+AGG | - | chr7_3:58893909-58893928 | None:intergenic | 50.0% | |
| !! | CCAGTGAGCCATTTTCCTGC+TGG | - | chr7_3:58890636-58890655 | None:intergenic | 55.0% |
| CCAGCAGGAAAATGGCTCAC+TGG | + | chr7_3:58890633-58890652 | Msa1112890:CDS | 55.0% | |
| AACGACTCATGTGCGACACC+AGG | - | chr7_3:58890792-58890811 | None:intergenic | 55.0% | |
| AGAGGAAGAGATGCACCAGC+AGG | + | chr7_3:58891948-58891967 | Msa1112890:CDS | 55.0% | |
| ! | TCACAGGCCCCGATTTTCTC+AGG | - | chr7_3:58893893-58893912 | None:intergenic | 55.0% |
| GGCAACAGATCACAAGGCGG+AGG | - | chr7_3:58893860-58893879 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 58890178 | 58894130 | 58890178 | ID=Msa1112890;Name=Msa1112890 |
| chr7_3 | mRNA | 58890178 | 58894130 | 58890178 | ID=Msa1112890-mRNA-1;Parent=Msa1112890;Name=Msa1112890-mRNA-1;_AED=0.20;_eAED=0.20;_QI=44|0.4|0.5|1|1|1|6|142|438 |
| chr7_3 | exon | 58890178 | 58890257 | 58890178 | ID=Msa1112890-mRNA-1:exon:13009;Parent=Msa1112890-mRNA-1 |
| chr7_3 | exon | 58890387 | 58890704 | 58890387 | ID=Msa1112890-mRNA-1:exon:13010;Parent=Msa1112890-mRNA-1 |
| chr7_3 | exon | 58891903 | 58892023 | 58891903 | ID=Msa1112890-mRNA-1:exon:13011;Parent=Msa1112890-mRNA-1 |
| chr7_3 | exon | 58892833 | 58892902 | 58892833 | ID=Msa1112890-mRNA-1:exon:13012;Parent=Msa1112890-mRNA-1 |
| chr7_3 | exon | 58892995 | 58893053 | 58892995 | ID=Msa1112890-mRNA-1:exon:13013;Parent=Msa1112890-mRNA-1 |
| chr7_3 | exon | 58893276 | 58894130 | 58893276 | ID=Msa1112890-mRNA-1:exon:13014;Parent=Msa1112890-mRNA-1 |
| chr7_3 | five_prime_UTR | 58890178 | 58890221 | 58890178 | ID=Msa1112890-mRNA-1:five_prime_utr;Parent=Msa1112890-mRNA-1 |
| chr7_3 | CDS | 58890222 | 58890257 | 58890222 | ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1 |
| chr7_3 | CDS | 58890387 | 58890704 | 58890387 | ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1 |
| chr7_3 | CDS | 58891903 | 58892023 | 58891903 | ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1 |
| chr7_3 | CDS | 58892833 | 58892902 | 58892833 | ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1 |
| chr7_3 | CDS | 58892995 | 58893053 | 58892995 | ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1 |
| chr7_3 | CDS | 58893276 | 58893988 | 58893276 | ID=Msa1112890-mRNA-1:cds;Parent=Msa1112890-mRNA-1 |
| chr7_3 | three_prime_UTR | 58893989 | 58894130 | 58893989 | ID=Msa1112890-mRNA-1:three_prime_utr;Parent=Msa1112890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
