Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204780 | XP_024632100.1 | 96.863 | 510 | 6 | 1 | 1 | 510 | 1 | 500 | 0.0 | 1014 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204780 | sp|Q9LJE5|ECT2_ARATH | 49.074 | 324 | 134 | 9 | 203 | 506 | 338 | 650 | 8.64e-90 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204780 | G7IT77 | 96.844 | 507 | 6 | 1 | 4 | 510 | 88 | 584 | 0.0 | 1013 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204780 | Msa0260790 | 0.964283 | 3.928050e-123 | -8.615850e-47 |
| Msa0204780 | Msa0260800 | 0.929964 | 3.257320e-93 | -8.615850e-47 |
| Msa0204780 | Msa0328380 | 0.864237 | 1.405100e-64 | -8.615850e-47 |
| Msa0204780 | Msa0370870 | 0.832172 | 1.099853e-55 | -8.615850e-47 |
| Msa0204780 | Msa0419050 | 0.814030 | 1.895771e-51 | -8.615850e-47 |
| Msa0204780 | Msa0431020 | 0.822020 | 2.961734e-53 | -8.615850e-47 |
| Msa0204780 | Msa0510560 | 0.815066 | 1.118077e-51 | -8.615850e-47 |
| Msa0204780 | Msa0520860 | -0.802471 | 5.524107e-49 | -8.615850e-47 |
| Msa0204780 | Msa0542360 | 0.806410 | 8.339903e-50 | -8.615850e-47 |
| Msa0204780 | Msa0588020 | 0.802699 | 4.957362e-49 | -8.615850e-47 |
| Msa0204780 | Msa0598560 | 0.832033 | 1.190881e-55 | -8.615850e-47 |
| Msa0204780 | Msa0599260 | 0.801497 | 8.755754e-49 | -8.615850e-47 |
| Msa0204780 | Msa0677570 | 0.822332 | 2.506977e-53 | -8.615850e-47 |
| Msa0204780 | Msa0866800 | 0.845506 | 3.891972e-59 | -8.615850e-47 |
| Msa0204780 | Msa0982590 | 0.815150 | 1.071556e-51 | -8.615850e-47 |
| Msa0204780 | Msa1143790 | 0.808482 | 3.030924e-50 | -8.615850e-47 |
| Msa0204780 | Msa1224690 | 0.808168 | 3.535427e-50 | -8.615850e-47 |
| Msa0204780 | Msa1368180 | 0.822679 | 2.082599e-53 | -8.615850e-47 |
| Msa0204780 | Msa1385580 | 0.818927 | 1.518437e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204780 | MtrunA17_Chr2g0309651 | 96.844 | 507 | 6 | 1 | 4 | 510 | 88 | 584 | 0.0 | 1013 |
| Msa0204780 | MtrunA17_Chr4g0069011 | 42.455 | 497 | 231 | 15 | 7 | 463 | 24 | 505 | 4.11e-102 | 320 |
| Msa0204780 | MtrunA17_Chr2g0293641 | 42.540 | 496 | 212 | 17 | 10 | 460 | 69 | 536 | 1.00e-100 | 318 |
| Msa0204780 | MtrunA17_Chr4g0000071 | 63.291 | 237 | 81 | 2 | 227 | 461 | 330 | 562 | 5.18e-97 | 306 |
| Msa0204780 | MtrunA17_Chr2g0277111 | 63.388 | 183 | 67 | 0 | 276 | 458 | 268 | 450 | 5.49e-84 | 269 |
| Msa0204780 | MtrunA17_Chr7g0253191 | 58.768 | 211 | 77 | 2 | 273 | 483 | 414 | 614 | 1.34e-81 | 266 |
| Msa0204780 | MtrunA17_Chr6g0461531 | 52.033 | 246 | 88 | 4 | 238 | 463 | 349 | 584 | 4.82e-79 | 259 |
| Msa0204780 | MtrunA17_Chr8g0380431 | 50.000 | 254 | 95 | 8 | 192 | 419 | 299 | 546 | 4.32e-68 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204780 | AT1G79270.2 | 45.287 | 488 | 205 | 11 | 7 | 484 | 63 | 498 | 2.17e-125 | 376 |
| Msa0204780 | AT1G79270.4 | 45.287 | 488 | 205 | 11 | 7 | 484 | 63 | 498 | 2.17e-125 | 376 |
| Msa0204780 | AT1G79270.3 | 45.287 | 488 | 205 | 11 | 7 | 484 | 63 | 498 | 2.17e-125 | 376 |
| Msa0204780 | AT1G79270.1 | 45.287 | 488 | 205 | 11 | 7 | 484 | 78 | 513 | 5.21e-125 | 375 |
| Msa0204780 | AT1G48110.2 | 39.798 | 495 | 235 | 13 | 2 | 462 | 28 | 493 | 2.48e-96 | 305 |
| Msa0204780 | AT1G48110.1 | 39.798 | 495 | 235 | 13 | 2 | 462 | 28 | 493 | 2.48e-96 | 305 |
| Msa0204780 | AT3G13060.2 | 54.007 | 287 | 107 | 7 | 222 | 489 | 316 | 596 | 2.39e-93 | 297 |
| Msa0204780 | AT3G13060.3 | 54.007 | 287 | 107 | 7 | 222 | 489 | 294 | 574 | 2.79e-93 | 296 |
| Msa0204780 | AT3G13060.6 | 54.007 | 287 | 107 | 7 | 222 | 489 | 294 | 574 | 2.79e-93 | 296 |
| Msa0204780 | AT3G13060.4 | 54.007 | 287 | 107 | 7 | 222 | 489 | 306 | 586 | 3.04e-93 | 296 |
| Msa0204780 | AT3G17330.2 | 58.407 | 226 | 91 | 1 | 241 | 463 | 116 | 341 | 1.06e-91 | 288 |
| Msa0204780 | AT3G17330.1 | 41.031 | 446 | 212 | 13 | 32 | 463 | 35 | 443 | 4.39e-91 | 290 |
| Msa0204780 | AT3G17330.3 | 41.031 | 446 | 212 | 13 | 32 | 463 | 35 | 443 | 4.39e-91 | 290 |
| Msa0204780 | AT3G13460.1 | 49.074 | 324 | 134 | 9 | 203 | 506 | 338 | 650 | 8.78e-91 | 291 |
| Msa0204780 | AT3G13460.2 | 49.074 | 324 | 134 | 9 | 203 | 506 | 335 | 647 | 8.91e-91 | 291 |
| Msa0204780 | AT3G13460.4 | 49.074 | 324 | 134 | 9 | 203 | 506 | 337 | 649 | 1.26e-90 | 291 |
| Msa0204780 | AT1G09810.2 | 52.878 | 278 | 123 | 5 | 189 | 462 | 88 | 361 | 8.74e-88 | 276 |
| Msa0204780 | AT1G09810.1 | 52.878 | 278 | 123 | 5 | 189 | 462 | 130 | 403 | 9.76e-88 | 278 |
| Msa0204780 | AT1G09810.3 | 52.878 | 278 | 123 | 5 | 189 | 462 | 111 | 384 | 1.46e-87 | 276 |
| Msa0204780 | AT1G55500.1 | 53.307 | 257 | 97 | 4 | 219 | 456 | 268 | 520 | 6.50e-86 | 275 |
| Msa0204780 | AT5G61020.1 | 55.696 | 237 | 85 | 4 | 238 | 461 | 199 | 428 | 7.10e-86 | 273 |
| Msa0204780 | AT5G61020.2 | 55.696 | 237 | 85 | 4 | 238 | 461 | 197 | 426 | 7.72e-86 | 273 |
| Msa0204780 | AT1G55500.2 | 53.307 | 257 | 97 | 4 | 219 | 456 | 324 | 576 | 8.60e-86 | 276 |
| Msa0204780 | AT1G55500.6 | 53.307 | 257 | 97 | 4 | 219 | 456 | 281 | 533 | 9.44e-86 | 275 |
| Msa0204780 | AT1G55500.4 | 53.307 | 257 | 97 | 4 | 219 | 456 | 324 | 576 | 1.04e-85 | 276 |
| Msa0204780 | AT1G55500.3 | 53.307 | 257 | 97 | 4 | 219 | 456 | 311 | 563 | 1.12e-85 | 276 |
| Msa0204780 | AT1G55500.5 | 53.307 | 257 | 97 | 4 | 219 | 456 | 324 | 576 | 1.32e-85 | 276 |
| Msa0204780 | AT3G03950.2 | 55.357 | 224 | 96 | 1 | 238 | 461 | 189 | 408 | 6.44e-82 | 261 |
| Msa0204780 | AT3G03950.1 | 55.357 | 224 | 96 | 1 | 238 | 461 | 190 | 409 | 6.48e-82 | 261 |
| Msa0204780 | AT3G03950.3 | 55.357 | 224 | 96 | 1 | 238 | 461 | 193 | 412 | 7.69e-82 | 261 |
| Msa0204780 | AT1G27960.3 | 56.250 | 224 | 83 | 3 | 238 | 461 | 215 | 423 | 2.44e-80 | 258 |
| Msa0204780 | AT1G27960.1 | 56.250 | 224 | 83 | 3 | 238 | 461 | 289 | 497 | 2.54e-79 | 258 |
| Msa0204780 | AT5G58190.2 | 52.033 | 246 | 106 | 5 | 244 | 483 | 275 | 514 | 7.66e-79 | 256 |
| Msa0204780 | AT5G58190.1 | 52.033 | 246 | 106 | 5 | 244 | 483 | 274 | 513 | 8.40e-79 | 256 |
| Msa0204780 | AT3G13060.1 | 56.075 | 214 | 72 | 4 | 222 | 419 | 316 | 523 | 3.76e-72 | 239 |
| Msa0204780 | AT3G13460.3 | 46.386 | 166 | 62 | 6 | 203 | 348 | 338 | 496 | 5.87e-30 | 123 |
| Msa0204780 | AT3G13060.5 | 43.357 | 143 | 59 | 4 | 222 | 348 | 316 | 452 | 2.41e-25 | 108 |
| Msa0204780 | AT1G27960.2 | 48.214 | 112 | 43 | 3 | 238 | 349 | 289 | 385 | 1.89e-20 | 94.4 |
| Msa0204780 | AT4G11970.5 | 29.612 | 206 | 101 | 8 | 271 | 450 | 44 | 231 | 4.32e-13 | 71.2 |
| Msa0204780 | AT4G11970.2 | 29.327 | 208 | 103 | 8 | 271 | 452 | 44 | 233 | 5.05e-13 | 70.9 |
| Msa0204780 | AT4G11970.3 | 29.327 | 208 | 103 | 8 | 271 | 452 | 44 | 233 | 5.91e-13 | 70.9 |
| Msa0204780 | AT4G11970.1 | 30.357 | 168 | 82 | 5 | 271 | 419 | 44 | 195 | 1.22e-12 | 70.5 |
| Msa0204780 | AT4G11970.4 | 30.357 | 168 | 82 | 5 | 271 | 419 | 44 | 195 | 1.22e-12 | 70.5 |
Find 140 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTTGTTGCTTTCATATT+AGG | 0.139929 | 2_1:+30620324 | None:intergenic |
| TATTCTGCTGGTAGTTATTA+TGG | 0.145347 | 2_1:-30622107 | Msa0204780:five_prime_UTR |
| TCAACAAAAGTATGGATTTC+TGG | 0.157531 | 2_1:-30619744 | Msa0204780:CDS |
| GAAAAGTGCATGATCATATT+TGG | 0.231336 | 2_1:+30620110 | None:intergenic |
| TTAAACTCTGGAGGTAATTC+TGG | 0.231621 | 2_1:-30620198 | Msa0204780:CDS |
| GTTACCTTGTTTGCTTGTTT+TGG | 0.232110 | 2_1:+30620718 | None:intergenic |
| GAGGCTCGACAATGCATTTC+AGG | 0.241866 | 2_1:-30620004 | Msa0204780:CDS |
| ATATTGATCTGTCCTGATTT+TGG | 0.248014 | 2_1:+30620152 | None:intergenic |
| GATTATAAGTGCTTCTTCTA+TGG | 0.253854 | 2_1:-30622655 | Msa0204780:five_prime_UTR |
| CCTGGCTATATTTCACCTTA+TGG | 0.275162 | 2_1:-30620985 | Msa0204780:CDS |
| GTGTCTCTACTATTTGTTAC+AGG | 0.280235 | 2_1:+30619616 | None:intergenic |
| TGTTTCAAGAACATCGATAT+TGG | 0.281374 | 2_1:-30619429 | Msa0204780:CDS |
| GGTTGTATTATAAGAGCTTT+TGG | 0.307205 | 2_1:-30622677 | Msa0204780:five_prime_UTR |
| AGTGGATTTCAACAAAAGTA+TGG | 0.322061 | 2_1:-30619752 | Msa0204780:CDS |
| TCATATTTGGTTGGAAAATC+AGG | 0.322709 | 2_1:+30620123 | None:intergenic |
| CGATCTACCACTCGGTTTAC+TGG | 0.323936 | 2_1:+30620879 | None:intergenic |
| ATTTCTGGCAGCAAGATAAA+TGG | 0.351407 | 2_1:-30619729 | Msa0204780:CDS |
| ATATGCCGTAGCTGAGGATT+TGG | 0.367053 | 2_1:+30619664 | None:intergenic |
| AGGGAATCGTTATAATGAAT+TGG | 0.374688 | 2_1:-30620902 | Msa0204780:CDS |
| GGTAGAATGATTACAGGTTA+TGG | 0.390409 | 2_1:-30621822 | Msa0204780:intron |
| TCTTACGGTAGAATGATTAC+AGG | 0.392006 | 2_1:-30621828 | Msa0204780:intron |
| TTTATAATGTGCCATTTGAC+AGG | 0.415396 | 2_1:+30619694 | None:intergenic |
| TCCGTCTTTCAACAACCAAT+TGG | 0.421822 | 2_1:-30621012 | Msa0204780:CDS |
| ATGTTCTTTACAACCAACTT+AGG | 0.426914 | 2_1:+30618623 | None:intergenic |
| TGGTGTCGATGTCCAGTATC+AGG | 0.429764 | 2_1:-30621049 | Msa0204780:CDS |
| TAGGTCATGCAAGCAGATAA+TGG | 0.430474 | 2_1:-30621138 | Msa0204780:CDS |
| TCGAGCCTCTTATTGCCATT+AGG | 0.430781 | 2_1:+30620018 | None:intergenic |
| CGGGAGGGTAAACCTGATAC+TGG | 0.436348 | 2_1:+30621037 | None:intergenic |
| GCGACGGGAAAAGAACCCTT+TGG | 0.439928 | 2_1:+30620402 | None:intergenic |
| AGATCATGTGTATCATCAAT+AGG | 0.445206 | 2_1:-30622200 | Msa0204780:five_prime_UTR |
| TTCACTTTCTCAACCAACTT+AGG | 0.446586 | 2_1:+30618593 | None:intergenic |
| ATGGAGAACAGGACCAGAAA+TGG | 0.448479 | 2_1:+30620437 | None:intergenic |
| AGAGCATCAAGTACGATGTA+TGG | 0.449332 | 2_1:-30620050 | Msa0204780:CDS |
| TGTGGAGTAGCCGAGATGAT+TGG | 0.450864 | 2_1:-30619778 | Msa0204780:CDS |
| TTTGGGTTTCTTGCATGTAG+TGG | 0.453515 | 2_1:-30622727 | Msa0204780:five_prime_UTR |
| GTTGAAGAAACATCTAATAT+TGG | 0.457075 | 2_1:+30620760 | None:intergenic |
| TCATCAATAGGAGATGCTTC+TGG | 0.457910 | 2_1:-30622188 | Msa0204780:five_prime_UTR |
| CAGAATGTTGCTTATTCTGC+TGG | 0.462148 | 2_1:-30622119 | Msa0204780:five_prime_UTR |
| TATATTAAGGTTTCTTCAAA+GGG | 0.466093 | 2_1:-30622248 | Msa0204780:intron |
| TCAATGGTGACACCAAAATC+AGG | 0.467791 | 2_1:-30620164 | Msa0204780:CDS |
| TTATGTCGGCGCTGATGCTA+TGG | 0.468389 | 2_1:-30621766 | Msa0204780:CDS |
| CAGTATCAGGTTTACCCTCC+CGG | 0.470159 | 2_1:-30621036 | Msa0204780:CDS |
| CAACAACCAATTGGATCCCC+TGG | 0.475726 | 2_1:-30621003 | Msa0204780:CDS |
| ATTGCATCTGAATGGAGAAC+AGG | 0.476903 | 2_1:+30620426 | None:intergenic |
| CAACATTCTGATCAGTGGAT+TGG | 0.479321 | 2_1:+30622132 | None:intergenic |
| TACCGAAAAGAAAAGGAATA+CGG | 0.480275 | 2_1:+30619942 | None:intergenic |
| CCATAAGGTGAAATATAGCC+AGG | 0.480961 | 2_1:+30620985 | None:intergenic |
| GAGTAGCCAGTCTGATATCC+TGG | 0.482425 | 2_1:+30621096 | None:intergenic |
| CCTAGAACAGTTAATGCAAA+AGG | 0.482609 | 2_1:-30620225 | Msa0204780:CDS |
| GAATCCCATGAGTATGTTGA+TGG | 0.482741 | 2_1:+30620952 | None:intergenic |
| TTATATTAAGGTTTCTTCAA+AGG | 0.484480 | 2_1:-30622249 | Msa0204780:intron |
| CCTTTGGCATTGCATCTGAA+TGG | 0.488787 | 2_1:+30620418 | None:intergenic |
| TGGTTGTTGAAAGACGGAAC+CGG | 0.490975 | 2_1:+30621017 | None:intergenic |
| TATGGAGAGCAAGAAAATCA+AGG | 0.500681 | 2_1:-30621792 | Msa0204780:CDS |
| ACGGATATTTCCCTGTCAAA+TGG | 0.501338 | 2_1:-30619705 | Msa0204780:CDS |
| TACTTTCCTGTGAACACACC+TGG | 0.502118 | 2_1:-30621069 | Msa0204780:CDS |
| GATAGCATACCGAAAAGAAA+AGG | 0.504322 | 2_1:+30619935 | None:intergenic |
| TATGTAGAAAACTTTGCGAC+GGG | 0.505982 | 2_1:+30620387 | None:intergenic |
| GCAAAAGGTACTTTAAACTC+TGG | 0.507406 | 2_1:-30620210 | Msa0204780:CDS |
| GGTTGTTGAAAGACGGAACC+GGG | 0.507448 | 2_1:+30621018 | None:intergenic |
| TCGCAGAGTCGTACTGGTAG+TGG | 0.507501 | 2_1:-30620847 | Msa0204780:CDS |
| TCTGGAGATAAGAGTGTCAA+TGG | 0.513122 | 2_1:-30620180 | Msa0204780:CDS |
| TCAGGATGCACAGAATCAAA+TGG | 0.513178 | 2_1:-30619986 | Msa0204780:CDS |
| TATTATGGATACTACTATCC+AGG | 0.514216 | 2_1:-30622092 | Msa0204780:intron |
| TACTTCCATCAACATACTCA+TGG | 0.517546 | 2_1:-30620957 | Msa0204780:CDS |
| CACATGCAAGCTTACCATGT+TGG | 0.518787 | 2_1:+30622420 | None:intergenic |
| TCTCTTGCATGACCTTCTGA+CGG | 0.519675 | 2_1:+30619384 | None:intergenic |
| AGTGCATGATCATATTTGGT+TGG | 0.527014 | 2_1:+30620114 | None:intergenic |
| ATATAGCCAGGGGATCCAAT+TGG | 0.527493 | 2_1:+30620997 | None:intergenic |
| CCCTTGTGCTACATCTTGTG+TGG | 0.528879 | 2_1:+30620921 | None:intergenic |
| GTACACCTAATGGCAATAAG+AGG | 0.531549 | 2_1:-30620023 | Msa0204780:CDS |
| TCTTATGTCTATCTCATGCC+AGG | 0.534138 | 2_1:-30621114 | Msa0204780:CDS |
| GATGGAAGTAACTCACCATA+AGG | 0.536031 | 2_1:+30620970 | None:intergenic |
| TCCAATTGGTTGTTGAAAGA+CGG | 0.536670 | 2_1:+30621011 | None:intergenic |
| GTATGGGCGAGTACACCTAA+TGG | 0.536841 | 2_1:-30620033 | Msa0204780:CDS |
| TCACTTAATGAGCAGAATCA+AGG | 0.540048 | 2_1:-30620249 | Msa0204780:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_1:-30618606 | Msa0204780:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_1:-30618636 | Msa0204780:CDS |
| CAGAATCAAATGGAAGAGAA+AGG | 0.540329 | 2_1:-30619976 | Msa0204780:CDS |
| AAGGTTTCTTCAAAGGGTGG+TGG | 0.540738 | 2_1:-30622242 | Msa0204780:five_prime_UTR |
| TCGACACCAGGTGTGTTCAC+AGG | 0.547002 | 2_1:+30621063 | None:intergenic |
| CCAGCCAAAACAAGCAAACA+AGG | 0.547719 | 2_1:-30620722 | Msa0204780:intron |
| CCATTCAGATGCAATGCCAA+AGG | 0.548568 | 2_1:-30620418 | Msa0204780:CDS |
| CATTCAGATGCAATGCCAAA+GGG | 0.552432 | 2_1:-30620417 | Msa0204780:CDS |
| CAAACCTGTACATTGGTATG+TGG | 0.555627 | 2_1:+30619341 | None:intergenic |
| GAGCATCAAGTACGATGTAT+GGG | 0.559060 | 2_1:-30620049 | Msa0204780:CDS |
| TATGCCACATACCAATGTAC+AGG | 0.568570 | 2_1:-30619345 | Msa0204780:intron |
| GAGCAACTCATCAGAAGTGA+AGG | 0.569571 | 2_1:-30620791 | Msa0204780:CDS |
| CATATCAGCTGTAAAGAACA+TGG | 0.571245 | 2_1:-30618651 | Msa0204780:CDS |
| CTCAGTACTAACCCATCCCT+TGG | 0.572036 | 2_1:+30620302 | None:intergenic |
| TTATAATGTGCCATTTGACA+GGG | 0.573430 | 2_1:+30619695 | None:intergenic |
| GAAGACTTAACAAGTGCACT+TGG | 0.574492 | 2_1:-30618683 | Msa0204780:CDS |
| AGCAACAAGTACCAAGGGAT+GGG | 0.576647 | 2_1:-30620313 | Msa0204780:CDS |
| CTCATGCCAGGATATCAGAC+TGG | 0.577228 | 2_1:-30621102 | Msa0204780:CDS |
| ACCGAAAAGAAAAGGAATAC+GGG | 0.578211 | 2_1:+30619943 | None:intergenic |
| GTATGTAGAAAACTTTGCGA+CGG | 0.581650 | 2_1:+30620386 | None:intergenic |
| ACATACAATCAAGGAAAGAG+TGG | 0.582689 | 2_1:-30620369 | Msa0204780:CDS |
| GCTTGTGATCATTATTCTCG+AGG | 0.582868 | 2_1:+30619638 | None:intergenic |
| ATGAAAGCAACAAGTACCAA+GGG | 0.583635 | 2_1:-30620318 | Msa0204780:CDS |
| AGCCGAGATGATTGGACGAG+TGG | 0.583728 | 2_1:-30619770 | Msa0204780:CDS |
| ACTTCCATCAACATACTCAT+GGG | 0.589217 | 2_1:-30620956 | Msa0204780:CDS |
| ATTAAGGTTTCTTCAAAGGG+TGG | 0.589556 | 2_1:-30622245 | Msa0204780:intron |
| ATCCACTCGTCCAATCATCT+CGG | 0.591466 | 2_1:+30619768 | None:intergenic |
| AAGCAACAAGTACCAAGGGA+TGG | 0.592367 | 2_1:-30620314 | Msa0204780:CDS |
| TGAGTTCAGGTCAACGCTAG+TGG | 0.593166 | 2_1:-30619808 | Msa0204780:intron |
| GAAGAAACATCTAATATTGG+TGG | 0.594302 | 2_1:+30620763 | None:intergenic |
| ATAAGCAACATTCTGATCAG+TGG | 0.595793 | 2_1:+30622127 | None:intergenic |
| ATATTCCAAATCCTCAGCTA+CGG | 0.598835 | 2_1:-30619669 | Msa0204780:CDS |
| GTAAAATCAAACCTGTACAT+TGG | 0.599665 | 2_1:+30619334 | None:intergenic |
| GAAAATCAAGGATATTATGT+CGG | 0.602073 | 2_1:-30621780 | Msa0204780:CDS |
| TGTACATTGGTATGTGGCAT+AGG | 0.603452 | 2_1:+30619347 | None:intergenic |
| TTGAGCATTTCAATACCTTG+CGG | 0.609987 | 2_1:+30619467 | None:intergenic |
| AGAATGATTACAGGTTATGG+TGG | 0.612198 | 2_1:-30621819 | Msa0204780:CDS |
| AAAGGTACTTTAAACTCTGG+AGG | 0.617094 | 2_1:-30620207 | Msa0204780:CDS |
| TGAGTTGCTCACATTAGATG+AGG | 0.617233 | 2_1:+30620804 | None:intergenic |
| TGATACTGGACATCGACACC+AGG | 0.618053 | 2_1:+30621051 | None:intergenic |
| ATTTGGTTGGAAAATCAGGA+AGG | 0.619406 | 2_1:+30620127 | None:intergenic |
| CATAAGGTGAAATATAGCCA+GGG | 0.620198 | 2_1:+30620986 | None:intergenic |
| ACACATGATCTTGCATCAGA+TGG | 0.625382 | 2_1:+30622212 | None:intergenic |
| TAAGTTGGTTGTAAAGAACA+TGG | 0.629871 | 2_1:-30618621 | Msa0204780:CDS |
| TATGAAAGCAACAAGTACCA+AGG | 0.634095 | 2_1:-30620319 | Msa0204780:CDS |
| CATACAATCAAGGAAAGAGT+GGG | 0.635967 | 2_1:-30620368 | Msa0204780:CDS |
| AGGATAATATGCCGTAGCTG+AGG | 0.638343 | 2_1:+30619658 | None:intergenic |
| ATGAATAAGAAGAAGCTGCA+TGG | 0.646230 | 2_1:-30622472 | Msa0204780:five_prime_UTR |
| GAGTTGCTCACATTAGATGA+GGG | 0.650819 | 2_1:+30620805 | None:intergenic |
| TGGCAGCAAGATAAATGGAA+CGG | 0.653548 | 2_1:-30619724 | Msa0204780:CDS |
| AGCAACTCATCAGAAGTGAA+GGG | 0.655536 | 2_1:-30620790 | Msa0204780:CDS |
| AAATAGTAGAGACACTCAAG+AGG | 0.657180 | 2_1:-30619608 | Msa0204780:intron |
| GTTGAAAGACGGAACCGGGA+GGG | 0.658514 | 2_1:+30621022 | None:intergenic |
| GAAGCTGAAACTCAGAAACA+AGG | 0.666505 | 2_1:-30620280 | Msa0204780:CDS |
| ACCACACAAGATGTAGCACA+AGG | 0.668664 | 2_1:-30620922 | Msa0204780:CDS |
| GAAAAGATCGATCTACCACT+CGG | 0.689012 | 2_1:+30620871 | None:intergenic |
| ATAAGGTGAAATATAGCCAG+GGG | 0.699657 | 2_1:+30620987 | None:intergenic |
| GTTGAGAAAGTGAATGACTG+AGG | 0.708180 | 2_1:-30618584 | None:intergenic |
| TGAACATAATAATTCCAACA+TGG | 0.712248 | 2_1:-30622434 | Msa0204780:intron |
| TGTTGAAAGACGGAACCGGG+AGG | 0.716372 | 2_1:+30621021 | None:intergenic |
| GTTGGTTGTAAAGAACATGG+AGG | 0.739574 | 2_1:-30618618 | Msa0204780:CDS |
| CCACACAAGATGTAGCACAA+GGG | 0.750655 | 2_1:-30620921 | Msa0204780:CDS |
| ATCAGCTGTAAAGAACATGG+AGG | 0.773499 | 2_1:-30618648 | Msa0204780:CDS |
| GAATTGGCCAGTAAACCGAG+TGG | 0.774424 | 2_1:-30620886 | Msa0204780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAATAATCTAATTTA+AGG | + | chr2_1:30620979-30620998 | None:intergenic | 10.0% |
| !!! | ATTTTTGAAAAAGAAAATCT+GGG | + | chr2_1:30618591-30618610 | None:intergenic | 15.0% |
| !!! | TATTTTTGAAAAAGAAAATC+TGG | + | chr2_1:30618592-30618611 | None:intergenic | 15.0% |
| !!! | AAATATTGTTTTTTGTCTTT+TGG | - | chr2_1:30618714-30618733 | Msa0204780:intron | 15.0% |
| !!! | AATATTGTTTTTTGTCTTTT+GGG | - | chr2_1:30618715-30618734 | Msa0204780:intron | 15.0% |
| !!! | ATTTGTTGTATGTTATATTA+AGG | - | chr2_1:30619198-30619217 | Msa0204780:intron | 15.0% |
| !!! | TTTGAATTCTGAAATAAATT+TGG | - | chr2_1:30620040-30620059 | Msa0204780:CDS | 15.0% |
| !!! | TTGAATTCTGAAATAAATTT+GGG | - | chr2_1:30620041-30620060 | Msa0204780:CDS | 15.0% |
| !! | GAAAATAACATGTTAATAAA+AGG | - | chr2_1:30620082-30620101 | Msa0204780:CDS | 15.0% |
| !!! | GTAAATATCTAAATTTTTGT+TGG | - | chr2_1:30620291-30620310 | Msa0204780:CDS | 15.0% |
| !!! | AATTTTTGTTGGTTTTATTT+AGG | - | chr2_1:30620302-30620321 | Msa0204780:CDS | 15.0% |
| !!! | TTTCTCATTCTAAAATTATA+AGG | + | chr2_1:30620870-30620889 | None:intergenic | 15.0% |
| !! | CATTTATTAAATATTGTGAA+AGG | + | chr2_1:30622301-30622320 | None:intergenic | 15.0% |
| !! | TAGTAGAAAAATAAAGAATT+GGG | + | chr2_1:30622443-30622462 | None:intergenic | 15.0% |
| !! | ATAGTAGAAAAATAAAGAAT+TGG | + | chr2_1:30622444-30622463 | None:intergenic | 15.0% |
| !!! | AATTCTTTATTTTTCTACTA+TGG | - | chr2_1:30622443-30622462 | Msa0204780:five_prime_UTR | 15.0% |
| !! | AAGACTTCTAAATAAATTAT+TGG | + | chr2_1:30622489-30622508 | None:intergenic | 15.0% |
| !! | TAATTGTAACACAATTAAAA+AGG | + | chr2_1:30622519-30622538 | None:intergenic | 15.0% |
| !! | TATAAATGAAAAGTAAAGAA+GGG | + | chr2_1:30622545-30622564 | None:intergenic | 15.0% |
| !! | ATATAAATGAAAAGTAAAGA+AGG | + | chr2_1:30622546-30622565 | None:intergenic | 15.0% |
| !!! | TCTTTGCTTATATATAATTT+TGG | - | chr2_1:30622741-30622760 | Msa0204780:five_prime_UTR | 15.0% |
| !!! | TCTTTTTCAAAAATATCTTC+TGG | - | chr2_1:30618597-30618616 | Msa0204780:CDS | 20.0% |
| !!! | CTTTTTCAAAAATATCTTCT+GGG | - | chr2_1:30618598-30618617 | Msa0204780:CDS | 20.0% |
| !!! | TGTTCTTCTTGTTTATTTTT+TGG | - | chr2_1:30618859-30618878 | Msa0204780:intron | 20.0% |
| !!! | ATGTTTTCTTATTGTGTTTT+TGG | - | chr2_1:30619175-30619194 | Msa0204780:intron | 20.0% |
| !! | TTATATTAAGGTTTCTTCAA+AGG | - | chr2_1:30619210-30619229 | Msa0204780:intron | 20.0% |
| !! | TATATTAAGGTTTCTTCAAA+GGG | - | chr2_1:30619211-30619230 | Msa0204780:intron | 20.0% |
| !!! | TTTATGTTTTTCCTTTCTTA+CGG | - | chr2_1:30619616-30619635 | Msa0204780:CDS | 20.0% |
| !!! | TCATGATAATTGTGTTATTA+TGG | - | chr2_1:30619763-30619782 | Msa0204780:CDS | 20.0% |
| !! | TTAAGCATATATCTTAAGAA+AGG | - | chr2_1:30619965-30619984 | Msa0204780:CDS | 20.0% |
| !! | TAAGCATATATCTTAAGAAA+GGG | - | chr2_1:30619966-30619985 | Msa0204780:CDS | 20.0% |
| !! | TATTACATTACACATGAAAA+TGG | - | chr2_1:30620114-30620133 | Msa0204780:CDS | 20.0% |
| !! | AAACTATATATTGAACTGTT+GGG | - | chr2_1:30620896-30620915 | Msa0204780:CDS | 20.0% |
| !! | AGATTATTCTAAATAGTTTG+TGG | - | chr2_1:30620985-30621004 | Msa0204780:CDS | 20.0% |
| !! | AATGTCAAAAAAGAATTCAT+TGG | + | chr2_1:30622218-30622237 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTGACATTATTGA+TGG | - | chr2_1:30622223-30622242 | Msa0204780:five_prime_UTR | 20.0% |
| !! | CAAAGTAATTAATAACTCTT+TGG | - | chr2_1:30622385-30622404 | Msa0204780:intron | 20.0% |
| !! | TGAGTAGATTATGAAAATTT+GGG | + | chr2_1:30622575-30622594 | None:intergenic | 20.0% |
| !! | ATGAGTAGATTATGAAAATT+TGG | + | chr2_1:30622576-30622595 | None:intergenic | 20.0% |
| !!! | AAGAAATGAAATGGTTTTTT+CGG | + | chr2_1:30622704-30622723 | None:intergenic | 20.0% |
| !! | CAAAAACTAAAGAAATGAAA+TGG | + | chr2_1:30622713-30622732 | None:intergenic | 20.0% |
| ! | TGAACATAATAATTCCAACA+TGG | - | chr2_1:30619025-30619044 | Msa0204780:intron | 25.0% |
| ! | GAAAATCAAGGATATTATGT+CGG | - | chr2_1:30619679-30619698 | Msa0204780:CDS | 25.0% |
| ! | TCAGATTCAAGTATTTATAC+AGG | + | chr2_1:30619851-30619870 | None:intergenic | 25.0% |
| !!! | TTCTGAAATAAATTTGGGAT+TGG | - | chr2_1:30620046-30620065 | Msa0204780:CDS | 25.0% |
| !!! | ATTTTTTCCTTGAATGTTAC+AGG | + | chr2_1:30620183-30620202 | None:intergenic | 25.0% |
| ! | TAACATTCAAGGAAAAAATG+TGG | - | chr2_1:30620184-30620203 | Msa0204780:CDS | 25.0% |
| ! | GTTGAAGAAACATCTAATAT+TGG | + | chr2_1:30620702-30620721 | None:intergenic | 25.0% |
| ! | AAACAATAGTTAAACCAGAA+CGG | + | chr2_1:30620777-30620796 | None:intergenic | 25.0% |
| ! | GAAACTATATATTGAACTGT+TGG | - | chr2_1:30620895-30620914 | Msa0204780:CDS | 25.0% |
| ! | AACTATATATTGAACTGTTG+GGG | - | chr2_1:30620897-30620916 | Msa0204780:CDS | 25.0% |
| !! | AAGTTTTCTACATACAATCA+AGG | - | chr2_1:30621081-30621100 | Msa0204780:CDS | 25.0% |
| !!! | TTAGGAAAGTTGTTTTGATA+GGG | + | chr2_1:30621120-30621139 | None:intergenic | 25.0% |
| !!! | ATTAGGAAAGTTGTTTTGAT+AGG | + | chr2_1:30621121-30621140 | None:intergenic | 25.0% |
| ! | ATGAGCAAATAAAACACAAA+CGG | + | chr2_1:30621583-30621602 | None:intergenic | 25.0% |
| !!! | TTTTGATAATTGTTGAGTTC+AGG | - | chr2_1:30621638-30621657 | Msa0204780:intron | 25.0% |
| ! | AAGATACAGAAGAAATAACT+AGG | + | chr2_1:30621924-30621943 | None:intergenic | 25.0% |
| ! | TTAGTAAGAAGTAAGAACTT+TGG | + | chr2_1:30622171-30622190 | None:intergenic | 25.0% |
| ! | TTAGAATAAGTTTGTCAACT+AGG | + | chr2_1:30622324-30622343 | None:intergenic | 25.0% |
| !!! | ATACCCTTTTTGGAATAATT+TGG | - | chr2_1:30622349-30622368 | Msa0204780:intron | 25.0% |
| ! | ACTCCAAATTATTCCAAAAA+GGG | + | chr2_1:30622355-30622374 | None:intergenic | 25.0% |
| ! | AACTCCAAATTATTCCAAAA+AGG | + | chr2_1:30622356-30622375 | None:intergenic | 25.0% |
| !!! | TTTTTGGAATAATTTGGAGT+TGG | - | chr2_1:30622355-30622374 | Msa0204780:intron | 25.0% |
| !!! | TTTTGGAATAATTTGGAGTT+GGG | - | chr2_1:30622356-30622375 | Msa0204780:intron | 25.0% |
| ! | TGTAACACAATTAAAAAGGT+GGG | + | chr2_1:30622515-30622534 | None:intergenic | 25.0% |
| ! | TTGTAACACAATTAAAAAGG+TGG | + | chr2_1:30622516-30622535 | None:intergenic | 25.0% |
| !!! | ACTTATTTTTACTCGAAACT+CGG | - | chr2_1:30622631-30622650 | Msa0204780:intron | 25.0% |
| ! | TTTTGTCTCTTCAACTGAAA+AGG | + | chr2_1:30618666-30618685 | None:intergenic | 30.0% |
| !!! | CATGTAGTGGATTGTTTTAA+GGG | - | chr2_1:30618745-30618764 | Msa0204780:intron | 30.0% |
| !!! | ATGTAGTGGATTGTTTTAAG+GGG | - | chr2_1:30618746-30618765 | Msa0204780:intron | 30.0% |
| !!! | TTAAGGGGTTTTGAGAATTT+TGG | - | chr2_1:30618761-30618780 | Msa0204780:intron | 30.0% |
| ! | GGTTGTATTATAAGAGCTTT+TGG | - | chr2_1:30618782-30618801 | Msa0204780:intron | 30.0% |
| GATTATAAGTGCTTCTTCTA+TGG | - | chr2_1:30618804-30618823 | Msa0204780:intron | 30.0% | |
| AGATCATGTGTATCATCAAT+AGG | - | chr2_1:30619259-30619278 | Msa0204780:intron | 30.0% | |
| TATTCTGCTGGTAGTTATTA+TGG | - | chr2_1:30619352-30619371 | Msa0204780:CDS | 30.0% | |
| TATTATGGATACTACTATCC+AGG | - | chr2_1:30619367-30619386 | Msa0204780:CDS | 30.0% | |
| ! | ATTGATAACACTGACGAATA+GGG | + | chr2_1:30619413-30619432 | None:intergenic | 30.0% |
| TAATCATTCTACCGTAAGAA+AGG | + | chr2_1:30619630-30619649 | None:intergenic | 30.0% | |
| ! | CTGATAATTTGCATTGCATT+AGG | - | chr2_1:30619867-30619886 | Msa0204780:intron | 30.0% |
| !!! | AATTTGGGATTGGCTAATTT+TGG | - | chr2_1:30620056-30620075 | Msa0204780:CDS | 30.0% |
| AGGGAATCGTTATAATGAAT+TGG | - | chr2_1:30620557-30620576 | Msa0204780:intron | 30.0% | |
| GAAGAAACATCTAATATTGG+TGG | + | chr2_1:30620699-30620718 | None:intergenic | 30.0% | |
| !! | AATAGTTTGTGGTGTTTTTC+AGG | - | chr2_1:30620996-30621015 | Msa0204780:CDS | 30.0% |
| !!! | TAGGAAAGTTGTTTTGATAG+GGG | + | chr2_1:30621119-30621138 | None:intergenic | 30.0% |
| !! | GTACTTGTTGCTTTCATATT+AGG | + | chr2_1:30621138-30621157 | None:intergenic | 30.0% |
| ! | ATATTGATCTGTCCTGATTT+TGG | + | chr2_1:30621310-30621329 | None:intergenic | 30.0% |
| TCATATTTGGTTGGAAAATC+AGG | + | chr2_1:30621339-30621358 | None:intergenic | 30.0% | |
| ! | GAAAAGTGCATGATCATATT+TGG | + | chr2_1:30621352-30621371 | None:intergenic | 30.0% |
| TACCGAAAAGAAAAGGAATA+CGG | + | chr2_1:30621520-30621539 | None:intergenic | 30.0% | |
| TGAGCAAATAAAACACAAAC+GGG | + | chr2_1:30621582-30621601 | None:intergenic | 30.0% | |
| ! | AGTGGATTTCAACAAAAGTA+TGG | - | chr2_1:30621707-30621726 | Msa0204780:intron | 30.0% |
| ! | TCAACAAAAGTATGGATTTC+TGG | - | chr2_1:30621715-30621734 | Msa0204780:intron | 30.0% |
| !! | TTATAATGTGCCATTTGACA+GGG | + | chr2_1:30621767-30621786 | None:intergenic | 30.0% |
| !! | TTTATAATGTGCCATTTGAC+AGG | + | chr2_1:30621768-30621787 | None:intergenic | 30.0% |
| TGTTTCAAGAACATCGATAT+TGG | - | chr2_1:30622030-30622049 | Msa0204780:intron | 30.0% | |
| GTAAAATCAAACCTGTACAT+TGG | + | chr2_1:30622128-30622147 | None:intergenic | 30.0% | |
| !! | AGAACTTTGGAATAAGAACA+AGG | + | chr2_1:30622158-30622177 | None:intergenic | 30.0% |
| CAACCACAATTATGCAAAAA+TGG | + | chr2_1:30622271-30622290 | None:intergenic | 30.0% | |
| ! | CATTTTTGCATAATTGTGGT+TGG | - | chr2_1:30622269-30622288 | Msa0204780:intron | 30.0% |
| ! | TCTAAACTTGATACCCTTTT+TGG | - | chr2_1:30622339-30622358 | Msa0204780:intron | 30.0% |
| !!! | AATGAAATGGTTTTTTCGGT+CGG | + | chr2_1:30622700-30622719 | None:intergenic | 30.0% |
| ATGTTCTTTACAACCAACTT+AGG | + | chr2_1:30622839-30622858 | None:intergenic | 30.0% | |
| !! | TAAGTTGGTTGTAAAGAACA+TGG | - | chr2_1:30622838-30622857 | Msa0204780:five_prime_UTR | 30.0% |
| !!! | GCATGTAGTGGATTGTTTTA+AGG | - | chr2_1:30618744-30618763 | Msa0204780:intron | 35.0% |
| ATGGCTGCTGAATTGAAAAA+AGG | - | chr2_1:30618823-30618842 | Msa0204780:intron | 35.0% | |
| ATGAATAAGAAGAAGCTGCA+TGG | - | chr2_1:30618987-30619006 | Msa0204780:intron | 35.0% | |
| ATTAAGGTTTCTTCAAAGGG+TGG | - | chr2_1:30619214-30619233 | Msa0204780:intron | 35.0% | |
| !!! | GCTTCTGGTAGTTTTAAAGA+AGG | - | chr2_1:30619286-30619305 | Msa0204780:intron | 35.0% |
| ATAAGCAACATTCTGATCAG+TGG | + | chr2_1:30619335-30619354 | None:intergenic | 35.0% | |
| ! | GATTGATAACACTGACGAAT+AGG | + | chr2_1:30619414-30619433 | None:intergenic | 35.0% |
| TCTTACGGTAGAATGATTAC+AGG | - | chr2_1:30619631-30619650 | Msa0204780:CDS | 35.0% | |
| GGTAGAATGATTACAGGTTA+TGG | - | chr2_1:30619637-30619656 | Msa0204780:CDS | 35.0% | |
| AGAATGATTACAGGTTATGG+TGG | - | chr2_1:30619640-30619659 | Msa0204780:CDS | 35.0% | |
| !!! | ACAGGTTATGGTGGATTTTA+TGG | - | chr2_1:30619649-30619668 | Msa0204780:CDS | 35.0% |
| TATGGAGAGCAAGAAAATCA+AGG | - | chr2_1:30619667-30619686 | Msa0204780:CDS | 35.0% | |
| ! | AAGTTTCTTGAGCTGGTTTA+TGG | - | chr2_1:30619732-30619751 | Msa0204780:CDS | 35.0% |
| AATTGACCAGATATGCAACA+AGG | + | chr2_1:30619810-30619829 | None:intergenic | 35.0% | |
| CTCACAACAACATGAAACAA+TGG | + | chr2_1:30619913-30619932 | None:intergenic | 35.0% | |
| TCCAATTGGTTGTTGAAAGA+CGG | + | chr2_1:30620451-30620470 | None:intergenic | 35.0% | |
| ATAAGGTGAAATATAGCCAG+GGG | + | chr2_1:30620475-30620494 | None:intergenic | 35.0% | |
| CATAAGGTGAAATATAGCCA+GGG | + | chr2_1:30620476-30620495 | None:intergenic | 35.0% | |
| TACTTCCATCAACATACTCA+TGG | - | chr2_1:30620502-30620521 | Msa0204780:intron | 35.0% | |
| ACTTCCATCAACATACTCAT+GGG | - | chr2_1:30620503-30620522 | Msa0204780:intron | 35.0% | |
| !! | GTTACCTTGTTTGCTTGTTT+TGG | + | chr2_1:30620744-30620763 | None:intergenic | 35.0% |
| TTAGACAGCGACAAATAAAC+AGG | + | chr2_1:30620805-30620824 | None:intergenic | 35.0% | |
| TATGTAGAAAACTTTGCGAC+GGG | + | chr2_1:30621075-30621094 | None:intergenic | 35.0% | |
| GTATGTAGAAAACTTTGCGA+CGG | + | chr2_1:30621076-30621095 | None:intergenic | 35.0% | |
| ACATACAATCAAGGAAAGAG+TGG | - | chr2_1:30621090-30621109 | Msa0204780:CDS | 35.0% | |
| CATACAATCAAGGAAAGAGT+GGG | - | chr2_1:30621091-30621110 | Msa0204780:CDS | 35.0% | |
| TATGAAAGCAACAAGTACCA+AGG | - | chr2_1:30621140-30621159 | Msa0204780:intron | 35.0% | |
| ATGAAAGCAACAAGTACCAA+GGG | - | chr2_1:30621141-30621160 | Msa0204780:intron | 35.0% | |
| TCACTTAATGAGCAGAATCA+AGG | - | chr2_1:30621210-30621229 | Msa0204780:intron | 35.0% | |
| ! | CCTTTTGCATTAACTGTTCT+AGG | + | chr2_1:30621237-30621256 | None:intergenic | 35.0% |
| CCTAGAACAGTTAATGCAAA+AGG | - | chr2_1:30621234-30621253 | Msa0204780:intron | 35.0% | |
| !! | GCAAAAGGTACTTTAAACTC+TGG | - | chr2_1:30621249-30621268 | Msa0204780:intron | 35.0% |
| !! | AAAGGTACTTTAAACTCTGG+AGG | - | chr2_1:30621252-30621271 | Msa0204780:intron | 35.0% |
| ! | TTAAACTCTGGAGGTAATTC+TGG | - | chr2_1:30621261-30621280 | Msa0204780:intron | 35.0% |
| ATTTGGTTGGAAAATCAGGA+AGG | + | chr2_1:30621335-30621354 | None:intergenic | 35.0% | |
| AGTGCATGATCATATTTGGT+TGG | + | chr2_1:30621348-30621367 | None:intergenic | 35.0% | |
| CAGAATCAAATGGAAGAGAA+AGG | - | chr2_1:30621483-30621502 | Msa0204780:intron | 35.0% | |
| ! | TCCCGTATTCCTTTTCTTTT+CGG | - | chr2_1:30621515-30621534 | Msa0204780:intron | 35.0% |
| ACCGAAAAGAAAAGGAATAC+GGG | + | chr2_1:30621519-30621538 | None:intergenic | 35.0% | |
| GATAGCATACCGAAAAGAAA+AGG | + | chr2_1:30621527-30621546 | None:intergenic | 35.0% | |
| !! | ATTTCTGGCAGCAAGATAAA+TGG | - | chr2_1:30621730-30621749 | Msa0204780:intron | 35.0% |
| ATATTCCAAATCCTCAGCTA+CGG | - | chr2_1:30621790-30621809 | Msa0204780:CDS | 35.0% | |
| ! | GTGTCTCTACTATTTGTTAC+AGG | + | chr2_1:30621846-30621865 | None:intergenic | 35.0% |
| AAATAGTAGAGACACTCAAG+AGG | - | chr2_1:30621851-30621870 | Msa0204780:intron | 35.0% | |
| TTGAGCATTTCAATACCTTG+CGG | + | chr2_1:30621995-30622014 | None:intergenic | 35.0% | |
| !! | GGACCATTTTTGCATAATTG+TGG | - | chr2_1:30622265-30622284 | Msa0204780:intron | 35.0% |
| ! | TTTTGCATAATTGTGGTTGG+AGG | - | chr2_1:30622272-30622291 | Msa0204780:intron | 35.0% |
| !! | CTATGGTTGATGTGTTCTTT+TGG | - | chr2_1:30622460-30622479 | Msa0204780:five_prime_UTR | 35.0% |
| CATATCAGCTGTAAAGAACA+TGG | - | chr2_1:30622808-30622827 | Msa0204780:five_prime_UTR | 35.0% | |
| TTCACTTTCTCAACCAACTT+AGG | + | chr2_1:30622869-30622888 | None:intergenic | 35.0% | |
| ! | TTTGGGTTTCTTGCATGTAG+TGG | - | chr2_1:30618732-30618751 | Msa0204780:intron | 40.0% |
| ACACATGATCTTGCATCAGA+TGG | + | chr2_1:30619250-30619269 | None:intergenic | 40.0% | |
| TCATCAATAGGAGATGCTTC+TGG | - | chr2_1:30619271-30619290 | Msa0204780:intron | 40.0% | |
| CAACATTCTGATCAGTGGAT+TGG | + | chr2_1:30619330-30619349 | None:intergenic | 40.0% | |
| ! | CAGAATGTTGCTTATTCTGC+TGG | - | chr2_1:30619340-30619359 | Msa0204780:intron | 40.0% |
| TTTGTTCAGATTCCGCTATG+CGG | - | chr2_1:30619536-30619555 | Msa0204780:intron | 40.0% | |
| ATATTAACGCTACCGCATAG+CGG | + | chr2_1:30619551-30619570 | None:intergenic | 40.0% | |
| ATCCTGTAAGTTTCTTGAGC+TGG | - | chr2_1:30619725-30619744 | Msa0204780:CDS | 40.0% | |
| AACCAGCTCAAGAAACTTAC+AGG | + | chr2_1:30619730-30619749 | None:intergenic | 40.0% | |
| ! | TAGTTGCCTTGTTGCATATC+TGG | - | chr2_1:30619801-30619820 | Msa0204780:CDS | 40.0% |
| CTGATGTCCTGTAACATTCA+AGG | - | chr2_1:30620173-30620192 | Msa0204780:CDS | 40.0% | |
| TAGGTCATGCAAGCAGATAA+TGG | - | chr2_1:30620321-30620340 | Msa0204780:CDS | 40.0% | |
| TCTTATGTCTATCTCATGCC+AGG | - | chr2_1:30620345-30620364 | Msa0204780:CDS | 40.0% | |
| TCCGTCTTTCAACAACCAAT+TGG | - | chr2_1:30620447-30620466 | Msa0204780:intron | 40.0% | |
| CCATAAGGTGAAATATAGCC+AGG | + | chr2_1:30620477-30620496 | None:intergenic | 40.0% | |
| CCTGGCTATATTTCACCTTA+TGG | - | chr2_1:30620474-30620493 | Msa0204780:intron | 40.0% | |
| GATGGAAGTAACTCACCATA+AGG | + | chr2_1:30620492-30620511 | None:intergenic | 40.0% | |
| GAATCCCATGAGTATGTTGA+TGG | + | chr2_1:30620510-30620529 | None:intergenic | 40.0% | |
| GAAAAGATCGATCTACCACT+CGG | + | chr2_1:30620591-30620610 | None:intergenic | 40.0% | |
| GAGTTGCTCACATTAGATGA+GGG | + | chr2_1:30620657-30620676 | None:intergenic | 40.0% | |
| TGAGTTGCTCACATTAGATG+AGG | + | chr2_1:30620658-30620677 | None:intergenic | 40.0% | |
| AGCAACTCATCAGAAGTGAA+GGG | - | chr2_1:30620669-30620688 | Msa0204780:intron | 40.0% | |
| CAATAGTTAAACCAGAACGG+AGG | + | chr2_1:30620774-30620793 | None:intergenic | 40.0% | |
| !!! | GTTTTTCAGGCATCCATTTC+TGG | - | chr2_1:30621009-30621028 | Msa0204780:CDS | 40.0% |
| ATTGCATCTGAATGGAGAAC+AGG | + | chr2_1:30621036-30621055 | None:intergenic | 40.0% | |
| CATTCAGATGCAATGCCAAA+GGG | - | chr2_1:30621042-30621061 | Msa0204780:CDS | 40.0% | |
| GAAGCTGAAACTCAGAAACA+AGG | - | chr2_1:30621179-30621198 | Msa0204780:intron | 40.0% | |
| !! | TCTGGAGATAAGAGTGTCAA+TGG | - | chr2_1:30621279-30621298 | Msa0204780:intron | 40.0% |
| TCAATGGTGACACCAAAATC+AGG | - | chr2_1:30621295-30621314 | Msa0204780:intron | 40.0% | |
| ! | AGAGCATCAAGTACGATGTA+TGG | - | chr2_1:30621409-30621428 | Msa0204780:intron | 40.0% |
| GAGCATCAAGTACGATGTAT+GGG | - | chr2_1:30621410-30621429 | Msa0204780:intron | 40.0% | |
| GTACACCTAATGGCAATAAG+AGG | - | chr2_1:30621436-30621455 | Msa0204780:intron | 40.0% | |
| TCAGGATGCACAGAATCAAA+TGG | - | chr2_1:30621473-30621492 | Msa0204780:intron | 40.0% | |
| CTCTGTTCTGTTAAGACCTA+CGG | - | chr2_1:30621556-30621575 | Msa0204780:intron | 40.0% | |
| ! | AACGCTAGTGGTCAATTTTG+TGG | - | chr2_1:30621663-30621682 | Msa0204780:intron | 40.0% |
| TGGCAGCAAGATAAATGGAA+CGG | - | chr2_1:30621735-30621754 | Msa0204780:intron | 40.0% | |
| ACGGATATTTCCCTGTCAAA+TGG | - | chr2_1:30621754-30621773 | Msa0204780:CDS | 40.0% | |
| GCTTGTGATCATTATTCTCG+AGG | + | chr2_1:30621824-30621843 | None:intergenic | 40.0% | |
| ! | TTCCAGATTCATTTTCCGCA+AGG | - | chr2_1:30621977-30621996 | Msa0204780:intron | 40.0% |
| TACCTTGCGGAAAATGAATC+TGG | + | chr2_1:30621982-30622001 | None:intergenic | 40.0% | |
| ! | TTTTTACGAAAGCCGTCAGA+AGG | - | chr2_1:30622063-30622082 | Msa0204780:intron | 40.0% |
| TGTACATTGGTATGTGGCAT+AGG | + | chr2_1:30622115-30622134 | None:intergenic | 40.0% | |
| TATGCCACATACCAATGTAC+AGG | - | chr2_1:30622114-30622133 | Msa0204780:five_prime_UTR | 40.0% | |
| CAAACCTGTACATTGGTATG+TGG | + | chr2_1:30622121-30622140 | None:intergenic | 40.0% | |
| !!! | TTTTTTCGGTCGGACTAGTT+TGG | + | chr2_1:30622690-30622709 | None:intergenic | 40.0% |
| GAAGACTTAACAAGTGCACT+TGG | - | chr2_1:30622776-30622795 | Msa0204780:five_prime_UTR | 40.0% | |
| ATCAGCTGTAAAGAACATGG+AGG | - | chr2_1:30622811-30622830 | Msa0204780:five_prime_UTR | 40.0% | |
| GTTGGTTGTAAAGAACATGG+AGG | - | chr2_1:30622841-30622860 | Msa0204780:five_prime_UTR | 40.0% | |
| CACATGCAAGCTTACCATGT+TGG | + | chr2_1:30619042-30619061 | None:intergenic | 45.0% | |
| AAGGTTTCTTCAAAGGGTGG+TGG | - | chr2_1:30619217-30619236 | Msa0204780:intron | 45.0% | |
| ACTGACGAATAGGGAACCAT+GGG | + | chr2_1:30619404-30619423 | None:intergenic | 45.0% | |
| AGGACATCAGAGATGATGTC+GGG | + | chr2_1:30620163-30620182 | None:intergenic | 45.0% | |
| CAGGACATCAGAGATGATGT+CGG | + | chr2_1:30620164-30620183 | None:intergenic | 45.0% | |
| TACTTTCCTGTGAACACACC+TGG | - | chr2_1:30620390-30620409 | Msa0204780:CDS | 45.0% | |
| TGGTTGTTGAAAGACGGAAC+CGG | + | chr2_1:30620445-30620464 | None:intergenic | 45.0% | |
| ATATAGCCAGGGGATCCAAT+TGG | + | chr2_1:30620465-30620484 | None:intergenic | 45.0% | |
| ACCACACAAGATGTAGCACA+AGG | - | chr2_1:30620537-30620556 | Msa0204780:intron | 45.0% | |
| CCACACAAGATGTAGCACAA+GGG | - | chr2_1:30620538-30620557 | Msa0204780:intron | 45.0% | |
| ! | TTTTCTTCGCAGAGTCGTAC+TGG | - | chr2_1:30620606-30620625 | Msa0204780:intron | 45.0% |
| GAGCAACTCATCAGAAGTGA+AGG | - | chr2_1:30620668-30620687 | Msa0204780:intron | 45.0% | |
| !!! | CCTTGTTTGCTTGTTTTGGC+TGG | + | chr2_1:30620740-30620759 | None:intergenic | 45.0% |
| CCAGCCAAAACAAGCAAACA+AGG | - | chr2_1:30620737-30620756 | Msa0204780:CDS | 45.0% | |
| TAACCTTACTTCCTCCGTTC+TGG | - | chr2_1:30620760-30620779 | Msa0204780:CDS | 45.0% | |
| AAACCAGAACGGAGGAAGTA+AGG | + | chr2_1:30620766-30620785 | None:intergenic | 45.0% | |
| TGAACTGTTGGGGATTTCGT+AGG | - | chr2_1:30620907-30620926 | Msa0204780:CDS | 45.0% | |
| ATGGAGAACAGGACCAGAAA+TGG | + | chr2_1:30621025-30621044 | None:intergenic | 45.0% | |
| CCTTTGGCATTGCATCTGAA+TGG | + | chr2_1:30621044-30621063 | None:intergenic | 45.0% | |
| CCATTCAGATGCAATGCCAA+AGG | - | chr2_1:30621041-30621060 | Msa0204780:CDS | 45.0% | |
| AAGCAACAAGTACCAAGGGA+TGG | - | chr2_1:30621145-30621164 | Msa0204780:intron | 45.0% | |
| AGCAACAAGTACCAAGGGAT+GGG | - | chr2_1:30621146-30621165 | Msa0204780:intron | 45.0% | |
| TCGAGCCTCTTATTGCCATT+AGG | + | chr2_1:30621444-30621463 | None:intergenic | 45.0% | |
| ATAAAACACAAACGGGCCGT+AGG | + | chr2_1:30621575-30621594 | None:intergenic | 45.0% | |
| ATCCACTCGTCCAATCATCT+CGG | + | chr2_1:30621694-30621713 | None:intergenic | 45.0% | |
| ATATGCCGTAGCTGAGGATT+TGG | + | chr2_1:30621798-30621817 | None:intergenic | 45.0% | |
| AGGATAATATGCCGTAGCTG+AGG | + | chr2_1:30621804-30621823 | None:intergenic | 45.0% | |
| TCTCTTGCATGACCTTCTGA+CGG | + | chr2_1:30622078-30622097 | None:intergenic | 45.0% | |
| TGGATGAGTGCATGTGATTG+TGG | - | chr2_1:30622243-30622262 | Msa0204780:intron | 45.0% | |
| GGATGAGTGCATGTGATTGT+GGG | - | chr2_1:30622244-30622263 | Msa0204780:intron | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | - | chr2_1:30622823-30622842 | Msa0204780:five_prime_UTR | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | - | chr2_1:30622823-30622842 | Msa0204780:five_prime_UTR | 45.0% | |
| !!! | TTTATTTTTTTTATATTTTG+CGG | - | chr2_1:30619089-30619108 | Msa0204780:intron | 5.0% |
| ACGAATAGGGAACCATGGGA+GGG | + | chr2_1:30619400-30619419 | None:intergenic | 50.0% | |
| CACTGACGAATAGGGAACCA+TGG | + | chr2_1:30619405-30619424 | None:intergenic | 50.0% | |
| !! | TTATGTCGGCGCTGATGCTA+TGG | - | chr2_1:30619693-30619712 | Msa0204780:CDS | 50.0% |
| CTCATGCCAGGATATCAGAC+TGG | - | chr2_1:30620357-30620376 | Msa0204780:CDS | 50.0% | |
| GAGTAGCCAGTCTGATATCC+TGG | + | chr2_1:30620366-30620385 | None:intergenic | 50.0% | |
| TGATACTGGACATCGACACC+AGG | + | chr2_1:30620411-30620430 | None:intergenic | 50.0% | |
| !! | TGGTGTCGATGTCCAGTATC+AGG | - | chr2_1:30620410-30620429 | Msa0204780:CDS | 50.0% |
| CAGTATCAGGTTTACCCTCC+CGG | - | chr2_1:30620423-30620442 | Msa0204780:CDS | 50.0% | |
| GGTTGTTGAAAGACGGAACC+GGG | + | chr2_1:30620444-30620463 | None:intergenic | 50.0% | |
| CAACAACCAATTGGATCCCC+TGG | - | chr2_1:30620456-30620475 | Msa0204780:intron | 50.0% | |
| CCCTTGTGCTACATCTTGTG+TGG | + | chr2_1:30620541-30620560 | None:intergenic | 50.0% | |
| GAATTGGCCAGTAAACCGAG+TGG | - | chr2_1:30620573-30620592 | Msa0204780:intron | 50.0% | |
| CGATCTACCACTCGGTTTAC+TGG | + | chr2_1:30620583-30620602 | None:intergenic | 50.0% | |
| CTCAGTACTAACCCATCCCT+TGG | + | chr2_1:30621160-30621179 | None:intergenic | 50.0% | |
| GTATGGGCGAGTACACCTAA+TGG | - | chr2_1:30621426-30621445 | Msa0204780:intron | 50.0% | |
| GAGGCTCGACAATGCATTTC+AGG | - | chr2_1:30621455-30621474 | Msa0204780:intron | 50.0% | |
| TGAGTTCAGGTCAACGCTAG+TGG | - | chr2_1:30621651-30621670 | Msa0204780:intron | 50.0% | |
| TGTGGAGTAGCCGAGATGAT+TGG | - | chr2_1:30621681-30621700 | Msa0204780:intron | 50.0% | |
| GACGAATAGGGAACCATGGG+AGG | + | chr2_1:30619401-30619420 | None:intergenic | 55.0% | |
| TCGACACCAGGTGTGTTCAC+AGG | + | chr2_1:30620399-30620418 | None:intergenic | 55.0% | |
| CGGGAGGGTAAACCTGATAC+TGG | + | chr2_1:30620425-30620444 | None:intergenic | 55.0% | |
| GTTGAAAGACGGAACCGGGA+GGG | + | chr2_1:30620440-30620459 | None:intergenic | 55.0% | |
| TGTTGAAAGACGGAACCGGG+AGG | + | chr2_1:30620441-30620460 | None:intergenic | 55.0% | |
| ! | TCGCAGAGTCGTACTGGTAG+TGG | - | chr2_1:30620612-30620631 | Msa0204780:intron | 55.0% |
| GCGACGGGAAAAGAACCCTT+TGG | + | chr2_1:30621060-30621079 | None:intergenic | 55.0% | |
| AGCCGAGATGATTGGACGAG+TGG | - | chr2_1:30621689-30621708 | Msa0204780:intron | 55.0% | |
| CCATGGGAGGGAAGCTAACC+TGG | + | chr2_1:30619388-30619407 | None:intergenic | 60.0% | |
| !! | CCAGGTTAGCTTCCCTCCCA+TGG | - | chr2_1:30619385-30619404 | Msa0204780:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 30618586 | 30622895 | 30618586 | ID=Msa0204780;Name=Msa0204780 |
| chr2_1 | mRNA | 30618586 | 30622895 | 30618586 | ID=Msa0204780-mRNA-1;Parent=Msa0204780;Name=Msa0204780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=500|1|0.88|1|0.87|0.88|9|0|510 |
| chr2_1 | exon | 30618586 | 30618711 | 30618586 | ID=Msa0204780-mRNA-1:exon:10845;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30619346 | 30619498 | 30619346 | ID=Msa0204780-mRNA-1:exon:10844;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30619609 | 30619821 | 30619609 | ID=Msa0204780-mRNA-1:exon:10843;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30619945 | 30620463 | 30619945 | ID=Msa0204780-mRNA-1:exon:10842;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30620723 | 30621157 | 30620723 | ID=Msa0204780-mRNA-1:exon:10841;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30621752 | 30621839 | 30621752 | ID=Msa0204780-mRNA-1:exon:10840;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30622093 | 30622261 | 30622093 | ID=Msa0204780-mRNA-1:exon:10839;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30622435 | 30622505 | 30622435 | ID=Msa0204780-mRNA-1:exon:10838;Parent=Msa0204780-mRNA-1 |
| chr2_1 | exon | 30622637 | 30622895 | 30622637 | ID=Msa0204780-mRNA-1:exon:10837;Parent=Msa0204780-mRNA-1 |
| chr2_1 | five_prime_UTR | 30622637 | 30622895 | 30622637 | ID=Msa0204780-mRNA-1:five_prime_utr;Parent=Msa0204780-mRNA-1 |
| chr2_1 | five_prime_UTR | 30622435 | 30622505 | 30622435 | ID=Msa0204780-mRNA-1:five_prime_utr;Parent=Msa0204780-mRNA-1 |
| chr2_1 | five_prime_UTR | 30622093 | 30622261 | 30622093 | ID=Msa0204780-mRNA-1:five_prime_utr;Parent=Msa0204780-mRNA-1 |
| chr2_1 | five_prime_UTR | 30621839 | 30621839 | 30621839 | ID=Msa0204780-mRNA-1:five_prime_utr;Parent=Msa0204780-mRNA-1 |
| chr2_1 | CDS | 30621752 | 30621838 | 30621752 | ID=Msa0204780-mRNA-1:cds;Parent=Msa0204780-mRNA-1 |
| chr2_1 | CDS | 30620723 | 30621157 | 30620723 | ID=Msa0204780-mRNA-1:cds;Parent=Msa0204780-mRNA-1 |
| chr2_1 | CDS | 30619945 | 30620463 | 30619945 | ID=Msa0204780-mRNA-1:cds;Parent=Msa0204780-mRNA-1 |
| chr2_1 | CDS | 30619609 | 30619821 | 30619609 | ID=Msa0204780-mRNA-1:cds;Parent=Msa0204780-mRNA-1 |
| chr2_1 | CDS | 30619346 | 30619498 | 30619346 | ID=Msa0204780-mRNA-1:cds;Parent=Msa0204780-mRNA-1 |
| chr2_1 | CDS | 30618586 | 30618711 | 30618586 | ID=Msa0204780-mRNA-1:cds;Parent=Msa0204780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
