Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260800 | XP_003595919.1 | 97.306 | 594 | 6 | 1 | 1 | 594 | 1 | 584 | 0.0 | 1189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260800 | sp|Q9LJE5|ECT2_ARATH | 51.546 | 291 | 114 | 6 | 287 | 557 | 338 | 621 | 4.54e-89 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260800 | G7IT77 | 97.306 | 594 | 6 | 1 | 1 | 594 | 1 | 584 | 0.0 | 1189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204780 | Msa0260800 | 0.929964 | 3.257320e-93 | -8.615850e-47 |
| Msa0260790 | Msa0260800 | 0.966423 | 6.693333e-126 | -8.615850e-47 |
| Msa0260800 | Msa0588020 | 0.842594 | 2.350297e-58 | -8.615850e-47 |
| Msa0260800 | Msa0599260 | 0.828652 | 7.979488e-55 | -8.615850e-47 |
| Msa0260800 | Msa0628230 | 0.811909 | 5.530090e-51 | -8.615850e-47 |
| Msa0260800 | Msa1224690 | 0.809064 | 2.276047e-50 | -8.615850e-47 |
| Msa0260800 | Msa1269250 | 0.811871 | 5.635865e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260800 | MtrunA17_Chr2g0309651 | 97.306 | 594 | 6 | 1 | 1 | 594 | 1 | 584 | 0.0 | 1189 |
| Msa0260800 | MtrunA17_Chr4g0069011 | 42.270 | 511 | 246 | 15 | 70 | 547 | 11 | 505 | 6.87e-105 | 330 |
| Msa0260800 | MtrunA17_Chr2g0293641 | 42.308 | 520 | 226 | 18 | 70 | 544 | 46 | 536 | 2.67e-104 | 330 |
| Msa0260800 | MtrunA17_Chr4g0000071 | 64.783 | 230 | 75 | 2 | 318 | 545 | 337 | 562 | 4.57e-96 | 307 |
| Msa0260800 | MtrunA17_Chr2g0277111 | 63.388 | 183 | 67 | 0 | 360 | 542 | 268 | 450 | 1.56e-83 | 270 |
| Msa0260800 | MtrunA17_Chr7g0253191 | 58.768 | 211 | 77 | 2 | 357 | 567 | 414 | 614 | 5.43e-81 | 268 |
| Msa0260800 | MtrunA17_Chr6g0461531 | 52.033 | 246 | 88 | 4 | 322 | 547 | 349 | 584 | 2.23e-78 | 260 |
| Msa0260800 | MtrunA17_Chr8g0380431 | 50.000 | 254 | 95 | 8 | 276 | 503 | 299 | 546 | 2.33e-67 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260800 | AT1G79270.2 | 45.287 | 488 | 205 | 11 | 91 | 568 | 63 | 498 | 1.62e-124 | 377 |
| Msa0260800 | AT1G79270.4 | 45.287 | 488 | 205 | 11 | 91 | 568 | 63 | 498 | 1.62e-124 | 377 |
| Msa0260800 | AT1G79270.3 | 45.287 | 488 | 205 | 11 | 91 | 568 | 63 | 498 | 1.62e-124 | 377 |
| Msa0260800 | AT1G79270.1 | 45.287 | 488 | 205 | 11 | 91 | 568 | 78 | 513 | 2.31e-124 | 377 |
| Msa0260800 | AT1G48110.2 | 39.804 | 510 | 244 | 13 | 71 | 546 | 13 | 493 | 5.90e-100 | 317 |
| Msa0260800 | AT1G48110.1 | 39.804 | 510 | 244 | 13 | 71 | 546 | 13 | 493 | 5.90e-100 | 317 |
| Msa0260800 | AT3G13060.3 | 54.007 | 287 | 107 | 7 | 306 | 573 | 294 | 574 | 2.05e-92 | 297 |
| Msa0260800 | AT3G13060.6 | 54.007 | 287 | 107 | 7 | 306 | 573 | 294 | 574 | 2.05e-92 | 297 |
| Msa0260800 | AT3G13060.2 | 57.031 | 256 | 88 | 4 | 306 | 545 | 316 | 565 | 2.61e-92 | 297 |
| Msa0260800 | AT3G13060.4 | 54.007 | 287 | 107 | 7 | 306 | 573 | 306 | 586 | 3.17e-92 | 296 |
| Msa0260800 | AT3G17330.2 | 58.407 | 226 | 91 | 1 | 325 | 547 | 116 | 341 | 5.39e-91 | 290 |
| Msa0260800 | AT3G17330.1 | 41.031 | 446 | 212 | 13 | 116 | 547 | 35 | 443 | 3.17e-90 | 290 |
| Msa0260800 | AT3G17330.3 | 41.031 | 446 | 212 | 13 | 116 | 547 | 35 | 443 | 3.17e-90 | 290 |
| Msa0260800 | AT3G13460.2 | 51.546 | 291 | 114 | 6 | 287 | 557 | 335 | 618 | 4.25e-90 | 292 |
| Msa0260800 | AT3G13460.1 | 51.546 | 291 | 114 | 6 | 287 | 557 | 338 | 621 | 4.61e-90 | 292 |
| Msa0260800 | AT3G13460.4 | 51.546 | 291 | 114 | 6 | 287 | 557 | 337 | 620 | 4.95e-90 | 292 |
| Msa0260800 | AT1G09810.2 | 52.878 | 278 | 123 | 5 | 273 | 546 | 88 | 361 | 2.88e-87 | 278 |
| Msa0260800 | AT1G09810.1 | 58.261 | 230 | 95 | 1 | 317 | 546 | 175 | 403 | 3.21e-87 | 279 |
| Msa0260800 | AT1G09810.3 | 58.261 | 230 | 95 | 1 | 317 | 546 | 156 | 384 | 3.54e-87 | 278 |
| Msa0260800 | AT1G55500.1 | 53.307 | 257 | 97 | 4 | 303 | 540 | 268 | 520 | 3.72e-85 | 276 |
| Msa0260800 | AT1G55500.4 | 53.307 | 257 | 97 | 4 | 303 | 540 | 324 | 576 | 3.82e-85 | 277 |
| Msa0260800 | AT1G55500.2 | 53.307 | 257 | 97 | 4 | 303 | 540 | 324 | 576 | 3.98e-85 | 277 |
| Msa0260800 | AT5G61020.2 | 55.696 | 237 | 85 | 4 | 322 | 545 | 197 | 426 | 4.41e-85 | 274 |
| Msa0260800 | AT1G55500.6 | 53.307 | 257 | 97 | 4 | 303 | 540 | 281 | 533 | 4.86e-85 | 276 |
| Msa0260800 | AT5G61020.1 | 55.696 | 237 | 85 | 4 | 322 | 545 | 199 | 428 | 4.91e-85 | 274 |
| Msa0260800 | AT1G55500.5 | 53.307 | 257 | 97 | 4 | 303 | 540 | 324 | 576 | 5.98e-85 | 277 |
| Msa0260800 | AT1G55500.3 | 53.307 | 257 | 97 | 4 | 303 | 540 | 311 | 563 | 6.05e-85 | 276 |
| Msa0260800 | AT3G03950.1 | 55.357 | 224 | 96 | 1 | 322 | 545 | 190 | 409 | 2.10e-81 | 262 |
| Msa0260800 | AT3G03950.2 | 55.357 | 224 | 96 | 1 | 322 | 545 | 189 | 408 | 2.22e-81 | 262 |
| Msa0260800 | AT3G03950.3 | 55.357 | 224 | 96 | 1 | 322 | 545 | 193 | 412 | 2.34e-81 | 262 |
| Msa0260800 | AT1G27960.3 | 56.250 | 224 | 83 | 3 | 322 | 545 | 215 | 423 | 1.18e-79 | 259 |
| Msa0260800 | AT1G27960.1 | 56.250 | 224 | 83 | 3 | 322 | 545 | 289 | 497 | 8.24e-79 | 259 |
| Msa0260800 | AT5G58190.2 | 56.621 | 219 | 85 | 4 | 328 | 540 | 275 | 489 | 4.57e-78 | 256 |
| Msa0260800 | AT5G58190.1 | 56.621 | 219 | 85 | 4 | 328 | 540 | 274 | 488 | 6.18e-78 | 256 |
| Msa0260800 | AT3G13060.1 | 56.075 | 214 | 72 | 4 | 306 | 503 | 316 | 523 | 3.29e-71 | 239 |
| Msa0260800 | AT3G13460.3 | 46.203 | 158 | 50 | 6 | 303 | 432 | 346 | 496 | 1.44e-29 | 123 |
| Msa0260800 | AT3G13060.5 | 43.357 | 143 | 59 | 4 | 306 | 432 | 316 | 452 | 6.59e-25 | 108 |
| Msa0260800 | AT1G27960.2 | 48.214 | 112 | 43 | 3 | 322 | 433 | 289 | 385 | 2.18e-20 | 94.7 |
| Msa0260800 | AT4G11970.5 | 29.612 | 206 | 101 | 8 | 355 | 534 | 44 | 231 | 2.73e-13 | 72.4 |
| Msa0260800 | AT4G11970.2 | 30.357 | 168 | 82 | 5 | 355 | 503 | 44 | 195 | 3.51e-13 | 71.6 |
| Msa0260800 | AT4G11970.3 | 30.357 | 168 | 82 | 5 | 355 | 503 | 44 | 195 | 3.68e-13 | 72.0 |
| Msa0260800 | AT4G11970.1 | 30.460 | 174 | 84 | 6 | 355 | 509 | 44 | 199 | 9.31e-13 | 71.2 |
| Msa0260800 | AT4G11970.4 | 30.460 | 174 | 84 | 6 | 355 | 509 | 44 | 199 | 9.31e-13 | 71.2 |
Find 143 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTTGTTGCTTTCATATT+AGG | 0.139929 | 2_2:+58641851 | None:intergenic |
| TATTCTGCTGGTAGTTATTA+TGG | 0.145347 | 2_2:-58643632 | Msa0260800:CDS |
| TCAACAAAAGTATGGATTTC+TGG | 0.157531 | 2_2:-58641271 | Msa0260800:CDS |
| GAAAAGTGCATGATCATATT+TGG | 0.231336 | 2_2:+58641637 | None:intergenic |
| TTAAACTCTGGAGGTAATTC+TGG | 0.231621 | 2_2:-58641725 | Msa0260800:CDS |
| GTTACCTTGTTTGCTTGTTT+TGG | 0.232110 | 2_2:+58642244 | None:intergenic |
| GAGGCTCGACAATGCATTTC+AGG | 0.241866 | 2_2:-58641531 | Msa0260800:CDS |
| ATATTGATCTGTCCTGATTT+TGG | 0.248014 | 2_2:+58641679 | None:intergenic |
| GATTATAAGTGCTTCTTCTA+TGG | 0.253854 | 2_2:-58644181 | Msa0260800:exon |
| CCTGGCTATATTTCACCTTA+TGG | 0.275162 | 2_2:-58642511 | Msa0260800:CDS |
| GTGTCTCTACTATTTGTTAC+AGG | 0.280235 | 2_2:+58641143 | None:intergenic |
| GGTTGTATTATAAGAGCTTT+TGG | 0.307205 | 2_2:-58644203 | Msa0260800:five_prime_UTR |
| TGTATCAAGAACATCGATAT+TGG | 0.319476 | 2_2:-58640958 | Msa0260800:CDS |
| AGTGGATTTCAACAAAAGTA+TGG | 0.322061 | 2_2:-58641279 | Msa0260800:CDS |
| TCATATTTGGTTGGAAAATC+AGG | 0.322709 | 2_2:+58641650 | None:intergenic |
| CGATCTACCACTCGGTTTAC+TGG | 0.323936 | 2_2:+58642405 | None:intergenic |
| TGAATAGAATGTCTATATAA+AGG | 0.324868 | 2_2:+58644572 | None:intergenic |
| ATTTCTGGCAGCAAGATAAA+TGG | 0.351407 | 2_2:-58641256 | Msa0260800:CDS |
| TTTGTTGTGTCTAGATTTCT+GGG | 0.358011 | 2_2:+58644436 | None:intergenic |
| ATATGCCGTAGCTGAGGATT+TGG | 0.367053 | 2_2:+58641191 | None:intergenic |
| AGGGAATCGTTATAATGAAT+TGG | 0.374688 | 2_2:-58642428 | Msa0260800:CDS |
| TTTATAATGTGCCATTTGAC+AGG | 0.415396 | 2_2:+58641221 | None:intergenic |
| TCCGTCTTTCAACAACCAAT+TGG | 0.421822 | 2_2:-58642538 | Msa0260800:CDS |
| ATGTTCTTTACAACCAACTT+AGG | 0.426914 | 2_2:+58640158 | None:intergenic |
| TGGTGTCGATGTCCAGTATC+AGG | 0.429764 | 2_2:-58642575 | Msa0260800:CDS |
| TAGGTCATGCAAGCAGATAA+TGG | 0.430474 | 2_2:-58642664 | Msa0260800:CDS |
| TCGAGCCTCTTATTGCCATT+AGG | 0.430781 | 2_2:+58641545 | None:intergenic |
| CGGGAGGGTAAACCTGATAC+TGG | 0.436348 | 2_2:+58642563 | None:intergenic |
| GCGACGGGAAAAGAACCCTT+TGG | 0.439928 | 2_2:+58641929 | None:intergenic |
| GATAATCTTATTACGTTGGT+TGG | 0.440104 | 2_2:+58644532 | None:intergenic |
| AGATCATGTGTATCATCAAT+AGG | 0.445206 | 2_2:-58643725 | Msa0260800:CDS |
| TTCACTTTCTCAACCAACTT+AGG | 0.446586 | 2_2:+58640128 | None:intergenic |
| ATGGAGAACAGGACCAGAAA+TGG | 0.448479 | 2_2:+58641964 | None:intergenic |
| AGAGCATCAAGTACGATGTA+TGG | 0.449332 | 2_2:-58641577 | Msa0260800:CDS |
| TGTGGAGTAGCCGAGATGAT+TGG | 0.450864 | 2_2:-58641305 | Msa0260800:CDS |
| TTTGGGTTTCTTGCATGTAG+TGG | 0.453515 | 2_2:-58644253 | Msa0260800:five_prime_UTR |
| GTTGAAGAAACATCTAATAT+TGG | 0.457075 | 2_2:+58642286 | None:intergenic |
| TCATCAATAGGAGATGCTTC+TGG | 0.457910 | 2_2:-58643713 | Msa0260800:CDS |
| CAGAATGTTGCTTATTCTGC+TGG | 0.462148 | 2_2:-58643644 | Msa0260800:CDS |
| TATATTAAGGTTTCTTCAAA+GGG | 0.466093 | 2_2:-58643773 | Msa0260800:intron |
| TCAATGGTGACACCAAAATC+AGG | 0.467791 | 2_2:-58641691 | Msa0260800:CDS |
| TTATGTCGGCGCTGATGCTA+TGG | 0.468389 | 2_2:-58643291 | Msa0260800:CDS |
| CAGTATCAGGTTTACCCTCC+CGG | 0.470159 | 2_2:-58642562 | Msa0260800:CDS |
| CAACAACCAATTGGATCCCC+TGG | 0.475726 | 2_2:-58642529 | Msa0260800:CDS |
| ATTGCATCTGAATGGAGAAC+AGG | 0.476903 | 2_2:+58641953 | None:intergenic |
| CAACATTCTGATCAGTGGAT+TGG | 0.479321 | 2_2:+58643657 | None:intergenic |
| TACCGAAAAGAAAAGGAATA+CGG | 0.480275 | 2_2:+58641469 | None:intergenic |
| CCATAAGGTGAAATATAGCC+AGG | 0.480961 | 2_2:+58642511 | None:intergenic |
| GAGTAGCCAGTCTGATATCC+TGG | 0.482425 | 2_2:+58642622 | None:intergenic |
| CCTAGAACAGTTAATGCAAA+AGG | 0.482609 | 2_2:-58641752 | Msa0260800:CDS |
| GAATCCCATGAGTATGTTGA+TGG | 0.482741 | 2_2:+58642478 | None:intergenic |
| TTATATTAAGGTTTCTTCAA+AGG | 0.484480 | 2_2:-58643774 | Msa0260800:intron |
| CCTTTGGCATTGCATCTGAA+TGG | 0.488787 | 2_2:+58641945 | None:intergenic |
| TGGTTGTTGAAAGACGGAAC+CGG | 0.490975 | 2_2:+58642543 | None:intergenic |
| AGAGAGAAAATGAAGAACAA+TGG | 0.492903 | 2_2:+58644635 | None:intergenic |
| TATGGAGAGCAAGAAAATCA+AGG | 0.500681 | 2_2:-58643317 | Msa0260800:CDS |
| ACGGATATTTCCCTGTCAAA+TGG | 0.501338 | 2_2:-58641232 | Msa0260800:CDS |
| TACTTTCCTGTGAACACACC+TGG | 0.502118 | 2_2:-58642595 | Msa0260800:CDS |
| GATAGCATACCGAAAAGAAA+AGG | 0.504322 | 2_2:+58641462 | None:intergenic |
| TATGTAGAAAACTTTGCGAC+GGG | 0.505982 | 2_2:+58641914 | None:intergenic |
| GCAAAAGGTACTTTAAACTC+TGG | 0.507406 | 2_2:-58641737 | Msa0260800:CDS |
| GGTTGTTGAAAGACGGAACC+GGG | 0.507448 | 2_2:+58642544 | None:intergenic |
| TCTGGAGATAAGAGTGTCAA+TGG | 0.513122 | 2_2:-58641707 | Msa0260800:CDS |
| TATTATGGATACTACTATCC+AGG | 0.514216 | 2_2:-58643617 | Msa0260800:intron |
| TACTTCCATCAACATACTCA+TGG | 0.517546 | 2_2:-58642483 | Msa0260800:CDS |
| CACATGCAAGCTTACCATGT+TGG | 0.518787 | 2_2:+58643947 | None:intergenic |
| TCTCTTGCATGACTTTCTGA+CGG | 0.519675 | 2_2:+58640913 | None:intergenic |
| AGTGCATGATCATATTTGGT+TGG | 0.527014 | 2_2:+58641641 | None:intergenic |
| ATATAGCCAGGGGATCCAAT+TGG | 0.527493 | 2_2:+58642523 | None:intergenic |
| TCACAGAGTCGTACTGGTAG+TGG | 0.528587 | 2_2:-58642373 | Msa0260800:CDS |
| CCCTTGTGCTACATCTTGTG+TGG | 0.528879 | 2_2:+58642447 | None:intergenic |
| GTACACCTAATGGCAATAAG+AGG | 0.531549 | 2_2:-58641550 | Msa0260800:CDS |
| TCTTATGTCTATCTCATGCC+AGG | 0.534138 | 2_2:-58642640 | Msa0260800:CDS |
| GATGGAAGTAACTCACCATA+AGG | 0.536031 | 2_2:+58642496 | None:intergenic |
| TCCAATTGGTTGTTGAAAGA+CGG | 0.536670 | 2_2:+58642537 | None:intergenic |
| GTATGGGCGAGTACACCTAA+TGG | 0.536841 | 2_2:-58641560 | Msa0260800:CDS |
| TCACTTAATGAGCAGAATCA+AGG | 0.540048 | 2_2:-58641776 | Msa0260800:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_2:-58640141 | Msa0260800:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_2:-58640171 | Msa0260800:CDS |
| AAGGTTTCTTCAAAGGGTGG+TGG | 0.540738 | 2_2:-58643767 | Msa0260800:CDS |
| TCGACACCAGGTGTGTTCAC+AGG | 0.547002 | 2_2:+58642589 | None:intergenic |
| CCAGCCAAAACAAGCAAACA+AGG | 0.547719 | 2_2:-58642248 | Msa0260800:intron |
| CCATTCAGATGCAATGCCAA+AGG | 0.548568 | 2_2:-58641945 | Msa0260800:CDS |
| CATTCAGATGCAATGCCAAA+GGG | 0.552432 | 2_2:-58641944 | Msa0260800:CDS |
| AATGGATAATCTTATTACGT+TGG | 0.554331 | 2_2:+58644528 | None:intergenic |
| CAGAATCGAATGGAAGAGAA+AGG | 0.555397 | 2_2:-58641503 | Msa0260800:CDS |
| CAAACCTGTACATTGGTATG+TGG | 0.555627 | 2_2:+58640870 | None:intergenic |
| GAGCATCAAGTACGATGTAT+GGG | 0.559060 | 2_2:-58641576 | Msa0260800:CDS |
| TATGCCACATACCAATGTAC+AGG | 0.568570 | 2_2:-58640874 | Msa0260800:intron |
| GAGCAACTCATCAGAAGTGA+AGG | 0.569571 | 2_2:-58642317 | Msa0260800:CDS |
| CATATCAGCTGTAAAGAACA+TGG | 0.571245 | 2_2:-58640186 | Msa0260800:CDS |
| CTCAGTACTAACCCATCCCT+TGG | 0.572036 | 2_2:+58641829 | None:intergenic |
| TTATAATGTGCCATTTGACA+GGG | 0.573430 | 2_2:+58641222 | None:intergenic |
| GAAGACTTAACAAGTGCACT+TGG | 0.574492 | 2_2:-58640218 | Msa0260800:CDS |
| AGCAACAAGTACCAAGGGAT+GGG | 0.576647 | 2_2:-58641840 | Msa0260800:CDS |
| CTCATGCCAGGATATCAGAC+TGG | 0.577228 | 2_2:-58642628 | Msa0260800:CDS |
| ACCGAAAAGAAAAGGAATAC+GGG | 0.578211 | 2_2:+58641470 | None:intergenic |
| GTATGTAGAAAACTTTGCGA+CGG | 0.581650 | 2_2:+58641913 | None:intergenic |
| ACATACAATCAAGGAAAGAG+TGG | 0.582689 | 2_2:-58641896 | Msa0260800:CDS |
| GCTTGTGATCATTATTCTCG+AGG | 0.582868 | 2_2:+58641165 | None:intergenic |
| ATGAAAGCAACAAGTACCAA+GGG | 0.583635 | 2_2:-58641845 | Msa0260800:CDS |
| AGCCGAGATGATTGGACGAG+TGG | 0.583728 | 2_2:-58641297 | Msa0260800:CDS |
| ACTTCCATCAACATACTCAT+GGG | 0.589217 | 2_2:-58642482 | Msa0260800:CDS |
| ATTAAGGTTTCTTCAAAGGG+TGG | 0.589556 | 2_2:-58643770 | Msa0260800:intron |
| ATCCACTCGTCCAATCATCT+CGG | 0.591466 | 2_2:+58641295 | None:intergenic |
| AAGCAACAAGTACCAAGGGA+TGG | 0.592367 | 2_2:-58641841 | Msa0260800:CDS |
| TGAGTTCAGGTCAACGCTAG+TGG | 0.593166 | 2_2:-58641335 | Msa0260800:intron |
| GAAGAAACATCTAATATTGG+TGG | 0.594302 | 2_2:+58642289 | None:intergenic |
| ATAAGCAACATTCTGATCAG+TGG | 0.595793 | 2_2:+58643652 | None:intergenic |
| ATATTCCAAATCCTCAGCTA+CGG | 0.598835 | 2_2:-58641196 | Msa0260800:CDS |
| GTAAAATCAAACCTGTACAT+TGG | 0.599665 | 2_2:+58640863 | None:intergenic |
| GAAAATCAAGGATATTATGT+CGG | 0.602073 | 2_2:-58643305 | Msa0260800:CDS |
| TGTACATTGGTATGTGGCAT+AGG | 0.603452 | 2_2:+58640876 | None:intergenic |
| TTGAGCATTTCAATACCTTG+CGG | 0.609987 | 2_2:+58640996 | None:intergenic |
| AGAATGATTACAGGTTATGG+TGG | 0.612198 | 2_2:-58643344 | Msa0260800:intron |
| AAAGGTACTTTAAACTCTGG+AGG | 0.617094 | 2_2:-58641734 | Msa0260800:CDS |
| TGAGTTGCTCACATTAGATG+AGG | 0.617233 | 2_2:+58642330 | None:intergenic |
| TGATACTGGACATCGACACC+AGG | 0.618053 | 2_2:+58642577 | None:intergenic |
| ATTTGGTTGGAAAATCAGGA+AGG | 0.619406 | 2_2:+58641654 | None:intergenic |
| CATAAGGTGAAATATAGCCA+GGG | 0.620198 | 2_2:+58642512 | None:intergenic |
| ACACATGATCTTGCATCAGA+TGG | 0.625382 | 2_2:+58643737 | None:intergenic |
| TAAGTTGGTTGTAAAGAACA+TGG | 0.629871 | 2_2:-58640156 | Msa0260800:CDS |
| TATGAAAGCAACAAGTACCA+AGG | 0.634095 | 2_2:-58641846 | Msa0260800:CDS |
| CATACAATCAAGGAAAGAGT+GGG | 0.635967 | 2_2:-58641895 | Msa0260800:CDS |
| TCAGGATGCACAGAATCGAA+TGG | 0.637168 | 2_2:-58641513 | Msa0260800:CDS |
| AGGATAATATGCCGTAGCTG+AGG | 0.638343 | 2_2:+58641185 | None:intergenic |
| ATGAATAAGAAGAAGCTGCA+TGG | 0.646230 | 2_2:-58643999 | Msa0260800:CDS |
| GAGTTGCTCACATTAGATGA+GGG | 0.650819 | 2_2:+58642331 | None:intergenic |
| TGGCAGCAAGATAAATGGAA+CGG | 0.653548 | 2_2:-58641251 | Msa0260800:CDS |
| AGCAACTCATCAGAAGTGAA+GGG | 0.655536 | 2_2:-58642316 | Msa0260800:CDS |
| AAATAGTAGAGACACTCAAG+AGG | 0.657180 | 2_2:-58641135 | Msa0260800:intron |
| GAAAAGATCGATCTACCACT+CGG | 0.658289 | 2_2:+58642397 | None:intergenic |
| GTTGAAAGACGGAACCGGGA+GGG | 0.658514 | 2_2:+58642548 | None:intergenic |
| GAAGCTGAAACTCAGAAACA+AGG | 0.666505 | 2_2:-58641807 | Msa0260800:CDS |
| ACCACACAAGATGTAGCACA+AGG | 0.668664 | 2_2:-58642448 | Msa0260800:CDS |
| ATAAGGTGAAATATAGCCAG+GGG | 0.699657 | 2_2:+58642513 | None:intergenic |
| GTTGAGAAAGTGAATGACTG+AGG | 0.708180 | 2_2:-58640119 | None:intergenic |
| TGAACATAATAATTCCAACA+TGG | 0.712248 | 2_2:-58643961 | Msa0260800:intron |
| TGTTGAAAGACGGAACCGGG+AGG | 0.716372 | 2_2:+58642547 | None:intergenic |
| GTTGGTTGTAAAGAACATGG+AGG | 0.739574 | 2_2:-58640153 | Msa0260800:CDS |
| CCACACAAGATGTAGCACAA+GGG | 0.750655 | 2_2:-58642447 | Msa0260800:CDS |
| ATCAGCTGTAAAGAACATGG+AGG | 0.773499 | 2_2:-58640183 | Msa0260800:CDS |
| GAATTGGCCAGTAAACCGAG+TGG | 0.774424 | 2_2:-58642412 | Msa0260800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTGAAAAAGAAATTT+GGG | + | chr2_2:58640371-58640390 | None:intergenic | 10.0% |
| !!! | ATATTTTTGAAAAAGAAATT+TGG | + | chr2_2:58640372-58640391 | None:intergenic | 10.0% |
| !! | ATTTATTGTATGTTATATTA+AGG | - | chr2_2:58640977-58640996 | Msa0260800:CDS | 10.0% |
| !!! | ATTTAGAATAATCTAATTTA+AGG | + | chr2_2:58642757-58642776 | None:intergenic | 10.0% |
| !!! | AAATATTGTTTTTTGTCTTT+TGG | - | chr2_2:58640492-58640511 | Msa0260800:intron | 15.0% |
| !!! | AATATTGTTTTTTGTCTTTT+GGG | - | chr2_2:58640493-58640512 | Msa0260800:intron | 15.0% |
| !!! | ATGTTTTCTTATTGTATTTT+TGG | - | chr2_2:58640954-58640973 | Msa0260800:CDS | 15.0% |
| !!! | TTTGAATTCTGAAATAAATT+TGG | - | chr2_2:58641819-58641838 | Msa0260800:CDS | 15.0% |
| !! | GAAAATAACATGTTAATAAA+AGG | - | chr2_2:58641860-58641879 | Msa0260800:CDS | 15.0% |
| !!! | GTAAATATCTAAATTTTTGT+TGG | - | chr2_2:58642069-58642088 | Msa0260800:intron | 15.0% |
| !!! | AATTTTTGTTGGTTTTATTT+AGG | - | chr2_2:58642080-58642099 | Msa0260800:intron | 15.0% |
| !!! | TTTCTCTTTCTAAAATTATA+AGG | + | chr2_2:58642648-58642667 | None:intergenic | 15.0% |
| !! | CATTTATTAAATATTGTGAA+AGG | + | chr2_2:58644076-58644095 | None:intergenic | 15.0% |
| !! | TAGTAGAAAAATAAAGAATT+GGG | + | chr2_2:58644216-58644235 | None:intergenic | 15.0% |
| !! | ATAGTAGAAAAATAAAGAAT+TGG | + | chr2_2:58644217-58644236 | None:intergenic | 15.0% |
| !!! | AATTCTTTATTTTTCTACTA+TGG | - | chr2_2:58644216-58644235 | Msa0260800:five_prime_UTR | 15.0% |
| !! | AAGACTTCTAAATAAATTAT+TGG | + | chr2_2:58644261-58644280 | None:intergenic | 15.0% |
| !! | TAATTGTAACACAATTAAAA+AGG | + | chr2_2:58644291-58644310 | None:intergenic | 15.0% |
| !! | TATAAATGAAAAGTAAAGAA+GGG | + | chr2_2:58644317-58644336 | None:intergenic | 15.0% |
| !! | ATATAAATGAAAAGTAAAGA+AGG | + | chr2_2:58644318-58644337 | None:intergenic | 15.0% |
| !!! | TCTTTGCTTATATATAATTT+TGG | - | chr2_2:58644510-58644529 | Msa0260800:five_prime_UTR | 15.0% |
| !! | TGAATAGAATGTCTATATAA+AGG | + | chr2_2:58640194-58640213 | None:intergenic | 20.0% |
| !!! | TCTTTTTCAAAAATATCTTC+TGG | - | chr2_2:58640376-58640395 | Msa0260800:intron | 20.0% |
| !!! | CTTTTTCAAAAATATCTTCT+GGG | - | chr2_2:58640377-58640396 | Msa0260800:intron | 20.0% |
| !!! | TGTTCTTCTTGTTTATTTTT+TGG | - | chr2_2:58640637-58640656 | Msa0260800:intron | 20.0% |
| !!! | TTCTTGTTTATTTTTTGGTT+TGG | - | chr2_2:58640642-58640661 | Msa0260800:intron | 20.0% |
| !! | TTATATTAAGGTTTCTTCAA+AGG | - | chr2_2:58640989-58641008 | Msa0260800:CDS | 20.0% |
| !! | TATATTAAGGTTTCTTCAAA+GGG | - | chr2_2:58640990-58641009 | Msa0260800:CDS | 20.0% |
| !!! | TTTATGTTTTTCCTTTCTTA+CGG | - | chr2_2:58641395-58641414 | Msa0260800:intron | 20.0% |
| !!! | TCATGATAATTGTGTTATTA+TGG | - | chr2_2:58641542-58641561 | Msa0260800:CDS | 20.0% |
| !! | TTAAGCATATATCTTAAGAA+AGG | - | chr2_2:58641744-58641763 | Msa0260800:CDS | 20.0% |
| !! | TAAGCATATATCTTAAGAAA+GGG | - | chr2_2:58641745-58641764 | Msa0260800:CDS | 20.0% |
| !!! | ATTCTGAAATAAATTTGGAT+TGG | - | chr2_2:58641824-58641843 | Msa0260800:CDS | 20.0% |
| !!! | ATTTTTTACTTGAATGTTAC+AGG | + | chr2_2:58641961-58641980 | None:intergenic | 20.0% |
| !! | TAACATTCAAGTAAAAAATG+TGG | - | chr2_2:58641962-58641981 | Msa0260800:CDS | 20.0% |
| !! | AAACAATAGTTAAAACAGAA+CGG | + | chr2_2:58642555-58642574 | None:intergenic | 20.0% |
| !! | AAACTATATATTGAACTGTA+GGG | - | chr2_2:58642674-58642693 | Msa0260800:intron | 20.0% |
| !! | AGATTATTCTAAATAGTTTG+TGG | - | chr2_2:58642763-58642782 | Msa0260800:intron | 20.0% |
| !! | AAGATACAGAAGAAATAATT+AGG | + | chr2_2:58643701-58643720 | None:intergenic | 20.0% |
| !! | AATGTCAAAAAAGAATTCAT+TGG | + | chr2_2:58643993-58644012 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTGACATTATTGA+TGG | - | chr2_2:58643998-58644017 | Msa0260800:CDS | 20.0% |
| !! | CAAAGTAATTAATAACTCTT+TGG | - | chr2_2:58644159-58644178 | Msa0260800:intron | 20.0% |
| !! | TGAGTAGATTATGAAAATTT+GGG | + | chr2_2:58644347-58644366 | None:intergenic | 20.0% |
| !! | ATGAGTAGATTATGAAAATT+TGG | + | chr2_2:58644348-58644367 | None:intergenic | 20.0% |
| !!! | AAGAAATGAAATGGTTTTTT+CGG | + | chr2_2:58644473-58644492 | None:intergenic | 20.0% |
| !! | CAAAAACTAAAGAAATGAAA+TGG | + | chr2_2:58644482-58644501 | None:intergenic | 20.0% |
| ! | AATGGATAATCTTATTACGT+TGG | + | chr2_2:58640238-58640257 | None:intergenic | 25.0% |
| ! | AAAGAAGAAAGAGAAAAACA+CGG | + | chr2_2:58640263-58640282 | None:intergenic | 25.0% |
| !! | ATTTGGGTAAGAACTATTTT+TGG | + | chr2_2:58640355-58640374 | None:intergenic | 25.0% |
| ! | TGAACATAATAATTCCAACA+TGG | - | chr2_2:58640802-58640821 | Msa0260800:intron | 25.0% |
| ! | GAAAATCAAGGATATTATGT+CGG | - | chr2_2:58641458-58641477 | Msa0260800:intron | 25.0% |
| ! | TCAGATTCAAGTATTTATAC+AGG | + | chr2_2:58641630-58641649 | None:intergenic | 25.0% |
| !!! | AAATTTGGATTGGCTAATTT+TGG | - | chr2_2:58641834-58641853 | Msa0260800:CDS | 25.0% |
| ! | TATTGCATTACACATGAAAA+TGG | - | chr2_2:58641892-58641911 | Msa0260800:CDS | 25.0% |
| ! | GTTGAAGAAACATCTAATAT+TGG | + | chr2_2:58642480-58642499 | None:intergenic | 25.0% |
| ! | GAAACTATATATTGAACTGT+AGG | - | chr2_2:58642673-58642692 | Msa0260800:intron | 25.0% |
| ! | AACTATATATTGAACTGTAG+GGG | - | chr2_2:58642675-58642694 | Msa0260800:intron | 25.0% |
| !! | AAGTTTTCTACATACAATCA+AGG | - | chr2_2:58642858-58642877 | Msa0260800:intron | 25.0% |
| !!! | TTAGGAAAGTTGTTTTGATA+GGG | + | chr2_2:58642897-58642916 | None:intergenic | 25.0% |
| !!! | ATTAGGAAAGTTGTTTTGAT+AGG | + | chr2_2:58642898-58642917 | None:intergenic | 25.0% |
| ! | ATGAGCAAATAAAACACAAA+CGG | + | chr2_2:58643360-58643379 | None:intergenic | 25.0% |
| !!! | TTTTGATAATTGTTGAGTTC+AGG | - | chr2_2:58643415-58643434 | Msa0260800:intron | 25.0% |
| ! | TTAGTAAGAAGTAAGAACTT+TGG | + | chr2_2:58643946-58643965 | None:intergenic | 25.0% |
| !! | TTTAGAATAGTTTGTCAACT+AGG | + | chr2_2:58644099-58644118 | None:intergenic | 25.0% |
| ! | ACTCCAAATTATTCCAAAAA+GGG | + | chr2_2:58644129-58644148 | None:intergenic | 25.0% |
| ! | AACTCCAAATTATTCCAAAA+AGG | + | chr2_2:58644130-58644149 | None:intergenic | 25.0% |
| !!! | TTTTTGGAATAATTTGGAGT+TGG | - | chr2_2:58644129-58644148 | Msa0260800:intron | 25.0% |
| !!! | TTTTGGAATAATTTGGAGTT+GGG | - | chr2_2:58644130-58644149 | Msa0260800:intron | 25.0% |
| ! | TGTAACACAATTAAAAAGGT+GGG | + | chr2_2:58644287-58644306 | None:intergenic | 25.0% |
| ! | TTGTAACACAATTAAAAAGG+TGG | + | chr2_2:58644288-58644307 | None:intergenic | 25.0% |
| AGAGAGAAAATGAAGAACAA+TGG | + | chr2_2:58640131-58640150 | None:intergenic | 30.0% | |
| GATAATCTTATTACGTTGGT+TGG | + | chr2_2:58640234-58640253 | None:intergenic | 30.0% | |
| ! | TTTGGTGTAAAAATGAGAGA+TGG | + | chr2_2:58640291-58640310 | None:intergenic | 30.0% |
| GGTGCTAAAAAAATGGAATT+TGG | + | chr2_2:58640309-58640328 | None:intergenic | 30.0% | |
| ! | ATTTCTGGGTGCTAAAAAAA+TGG | + | chr2_2:58640316-58640335 | None:intergenic | 30.0% |
| ! | TTTGTTGTGTCTAGATTTCT+GGG | + | chr2_2:58640330-58640349 | None:intergenic | 30.0% |
| !! | TTTTGTTGTGTCTAGATTTC+TGG | + | chr2_2:58640331-58640350 | None:intergenic | 30.0% |
| ! | TTTTGTCTCTTCAACTGAAA+AGG | + | chr2_2:58640444-58640463 | None:intergenic | 30.0% |
| !!! | CATGTAGTGGATTGTTTTAA+GGG | - | chr2_2:58640523-58640542 | Msa0260800:intron | 30.0% |
| !!! | ATGTAGTGGATTGTTTTAAG+GGG | - | chr2_2:58640524-58640543 | Msa0260800:intron | 30.0% |
| !!! | TTAAGGGGTTTTGAGAATTT+TGG | - | chr2_2:58640539-58640558 | Msa0260800:intron | 30.0% |
| ! | GGTTGTATTATAAGAGCTTT+TGG | - | chr2_2:58640560-58640579 | Msa0260800:intron | 30.0% |
| GATTATAAGTGCTTCTTCTA+TGG | - | chr2_2:58640582-58640601 | Msa0260800:intron | 30.0% | |
| AGATCATGTGTATCATCAAT+AGG | - | chr2_2:58641038-58641057 | Msa0260800:intron | 30.0% | |
| TATTCTGCTGGTAGTTATTA+TGG | - | chr2_2:58641131-58641150 | Msa0260800:intron | 30.0% | |
| TATTATGGATACTACTATCC+AGG | - | chr2_2:58641146-58641165 | Msa0260800:CDS | 30.0% | |
| ! | ATTGATAACACTGACGAATA+GGG | + | chr2_2:58641192-58641211 | None:intergenic | 30.0% |
| TAATCATTCTACCGTAAGAA+AGG | + | chr2_2:58641409-58641428 | None:intergenic | 30.0% | |
| ! | CTGATAATTTGCATTGCATT+AGG | - | chr2_2:58641646-58641665 | Msa0260800:CDS | 30.0% |
| AGGGAATCGTTATAATGAAT+TGG | - | chr2_2:58642335-58642354 | Msa0260800:CDS | 30.0% | |
| GAAGAAACATCTAATATTGG+TGG | + | chr2_2:58642477-58642496 | None:intergenic | 30.0% | |
| TTAGACAGCGATAAATAAAC+AGG | + | chr2_2:58642583-58642602 | None:intergenic | 30.0% | |
| !! | AAATAGTTTGTGGTGTTTTC+AGG | - | chr2_2:58642773-58642792 | Msa0260800:intron | 30.0% |
| !!! | TAGGAAAGTTGTTTTGATAG+GGG | + | chr2_2:58642896-58642915 | None:intergenic | 30.0% |
| !! | GTACTTGTTGCTTTCATATT+AGG | + | chr2_2:58642915-58642934 | None:intergenic | 30.0% |
| ! | ATATTGATCTGTCCTGATTT+TGG | + | chr2_2:58643087-58643106 | None:intergenic | 30.0% |
| TCATATTTGGTTGGAAAATC+AGG | + | chr2_2:58643116-58643135 | None:intergenic | 30.0% | |
| ! | GAAAAGTGCATGATCATATT+TGG | + | chr2_2:58643129-58643148 | None:intergenic | 30.0% |
| TACCGAAAAGAAAAGGAATA+CGG | + | chr2_2:58643297-58643316 | None:intergenic | 30.0% | |
| TGAGCAAATAAAACACAAAC+GGG | + | chr2_2:58643359-58643378 | None:intergenic | 30.0% | |
| ! | AGTGGATTTCAACAAAAGTA+TGG | - | chr2_2:58643484-58643503 | Msa0260800:intron | 30.0% |
| ! | TCAACAAAAGTATGGATTTC+TGG | - | chr2_2:58643492-58643511 | Msa0260800:intron | 30.0% |
| !! | TTATAATGTGCCATTTGACA+GGG | + | chr2_2:58643544-58643563 | None:intergenic | 30.0% |
| !! | TTTATAATGTGCCATTTGAC+AGG | + | chr2_2:58643545-58643564 | None:intergenic | 30.0% |
| TGTATCAAGAACATCGATAT+TGG | - | chr2_2:58643805-58643824 | Msa0260800:intron | 30.0% | |
| GTAAAATCAAACCTGTACAT+TGG | + | chr2_2:58643903-58643922 | None:intergenic | 30.0% | |
| !! | AGAACTTTGGAATAAGAACA+AGG | + | chr2_2:58643933-58643952 | None:intergenic | 30.0% |
| CAACCACAATTATGCAAAAA+TGG | + | chr2_2:58644046-58644065 | None:intergenic | 30.0% | |
| ! | CATTTTTGCATAATTGTGGT+TGG | - | chr2_2:58644044-58644063 | Msa0260800:intron | 30.0% |
| !!! | CTACCCTTTTTGGAATAATT+TGG | - | chr2_2:58644123-58644142 | Msa0260800:intron | 30.0% |
| !! | ACTATGGTTGATGTTTCTTT+TGG | - | chr2_2:58644232-58644251 | Msa0260800:five_prime_UTR | 30.0% |
| !! | ACTGATTTTTACTCGAAACT+CGG | - | chr2_2:58644403-58644422 | Msa0260800:five_prime_UTR | 30.0% |
| !!! | AATGAAATGGTTTTTTCGGT+CGG | + | chr2_2:58644469-58644488 | None:intergenic | 30.0% |
| ATGTTCTTTACAACCAACTT+AGG | + | chr2_2:58644608-58644627 | None:intergenic | 30.0% | |
| !! | TAAGTTGGTTGTAAAGAACA+TGG | - | chr2_2:58644607-58644626 | Msa0260800:five_prime_UTR | 30.0% |
| AAAGAGAAAAACACGGTGAA+TGG | + | chr2_2:58640256-58640275 | None:intergenic | 35.0% | |
| !!! | GCATGTAGTGGATTGTTTTA+AGG | - | chr2_2:58640522-58640541 | Msa0260800:intron | 35.0% |
| ATGGCTGCTGAATTGAAAAA+AGG | - | chr2_2:58640601-58640620 | Msa0260800:intron | 35.0% | |
| ATGAATAAGAAGAAGCTGCA+TGG | - | chr2_2:58640764-58640783 | Msa0260800:intron | 35.0% | |
| ATTAAGGTTTCTTCAAAGGG+TGG | - | chr2_2:58640993-58641012 | Msa0260800:CDS | 35.0% | |
| !!! | GCTTCTGGTAGTTTTAAAGA+AGG | - | chr2_2:58641065-58641084 | Msa0260800:intron | 35.0% |
| ATAAGCAACATTCTGATCAG+TGG | + | chr2_2:58641114-58641133 | None:intergenic | 35.0% | |
| ! | GATTGATAACACTGACGAAT+AGG | + | chr2_2:58641193-58641212 | None:intergenic | 35.0% |
| TCTTACGGTAGAATGATTAC+AGG | - | chr2_2:58641410-58641429 | Msa0260800:intron | 35.0% | |
| GGTAGAATGATTACAGGTTA+TGG | - | chr2_2:58641416-58641435 | Msa0260800:intron | 35.0% | |
| AGAATGATTACAGGTTATGG+TGG | - | chr2_2:58641419-58641438 | Msa0260800:intron | 35.0% | |
| !!! | ACAGGTTATGGTGGATTTTA+TGG | - | chr2_2:58641428-58641447 | Msa0260800:intron | 35.0% |
| TATGGAGAGCAAGAAAATCA+AGG | - | chr2_2:58641446-58641465 | Msa0260800:intron | 35.0% | |
| ! | AAGTTTCTTGAGCTGGTTTA+TGG | - | chr2_2:58641511-58641530 | Msa0260800:CDS | 35.0% |
| AATTGACCAGATATGCAACA+AGG | + | chr2_2:58641589-58641608 | None:intergenic | 35.0% | |
| CTCACAACAACATGAAACAA+TGG | + | chr2_2:58641692-58641711 | None:intergenic | 35.0% | |
| TCCAATTGGTTGTTGAAAGA+CGG | + | chr2_2:58642229-58642248 | None:intergenic | 35.0% | |
| ATAAGGTGAAATATAGCCAG+GGG | + | chr2_2:58642253-58642272 | None:intergenic | 35.0% | |
| CATAAGGTGAAATATAGCCA+GGG | + | chr2_2:58642254-58642273 | None:intergenic | 35.0% | |
| TACTTCCATCAACATACTCA+TGG | - | chr2_2:58642280-58642299 | Msa0260800:CDS | 35.0% | |
| ACTTCCATCAACATACTCAT+GGG | - | chr2_2:58642281-58642300 | Msa0260800:CDS | 35.0% | |
| !! | GTTACCTTGTTTGCTTGTTT+TGG | + | chr2_2:58642522-58642541 | None:intergenic | 35.0% |
| CAATAGTTAAAACAGAACGG+AGG | + | chr2_2:58642552-58642571 | None:intergenic | 35.0% | |
| TATGTAGAAAACTTTGCGAC+GGG | + | chr2_2:58642852-58642871 | None:intergenic | 35.0% | |
| GTATGTAGAAAACTTTGCGA+CGG | + | chr2_2:58642853-58642872 | None:intergenic | 35.0% | |
| ACATACAATCAAGGAAAGAG+TGG | - | chr2_2:58642867-58642886 | Msa0260800:intron | 35.0% | |
| CATACAATCAAGGAAAGAGT+GGG | - | chr2_2:58642868-58642887 | Msa0260800:intron | 35.0% | |
| TATGAAAGCAACAAGTACCA+AGG | - | chr2_2:58642917-58642936 | Msa0260800:intron | 35.0% | |
| ATGAAAGCAACAAGTACCAA+GGG | - | chr2_2:58642918-58642937 | Msa0260800:intron | 35.0% | |
| TCACTTAATGAGCAGAATCA+AGG | - | chr2_2:58642987-58643006 | Msa0260800:intron | 35.0% | |
| ! | CCTTTTGCATTAACTGTTCT+AGG | + | chr2_2:58643014-58643033 | None:intergenic | 35.0% |
| CCTAGAACAGTTAATGCAAA+AGG | - | chr2_2:58643011-58643030 | Msa0260800:intron | 35.0% | |
| !! | GCAAAAGGTACTTTAAACTC+TGG | - | chr2_2:58643026-58643045 | Msa0260800:intron | 35.0% |
| !! | AAAGGTACTTTAAACTCTGG+AGG | - | chr2_2:58643029-58643048 | Msa0260800:intron | 35.0% |
| ! | TTAAACTCTGGAGGTAATTC+TGG | - | chr2_2:58643038-58643057 | Msa0260800:intron | 35.0% |
| ATTTGGTTGGAAAATCAGGA+AGG | + | chr2_2:58643112-58643131 | None:intergenic | 35.0% | |
| AGTGCATGATCATATTTGGT+TGG | + | chr2_2:58643125-58643144 | None:intergenic | 35.0% | |
| ! | TCCCGTATTCCTTTTCTTTT+CGG | - | chr2_2:58643292-58643311 | Msa0260800:CDS | 35.0% |
| ACCGAAAAGAAAAGGAATAC+GGG | + | chr2_2:58643296-58643315 | None:intergenic | 35.0% | |
| GATAGCATACCGAAAAGAAA+AGG | + | chr2_2:58643304-58643323 | None:intergenic | 35.0% | |
| !! | ATTTCTGGCAGCAAGATAAA+TGG | - | chr2_2:58643507-58643526 | Msa0260800:intron | 35.0% |
| ATATTCCAAATCCTCAGCTA+CGG | - | chr2_2:58643567-58643586 | Msa0260800:intron | 35.0% | |
| ! | GTGTCTCTACTATTTGTTAC+AGG | + | chr2_2:58643623-58643642 | None:intergenic | 35.0% |
| AAATAGTAGAGACACTCAAG+AGG | - | chr2_2:58643628-58643647 | Msa0260800:CDS | 35.0% | |
| TTGAGCATTTCAATACCTTG+CGG | + | chr2_2:58643770-58643789 | None:intergenic | 35.0% | |
| !! | GGACCATTTTTGCATAATTG+TGG | - | chr2_2:58644040-58644059 | Msa0260800:intron | 35.0% |
| ! | TTTTGCATAATTGTGGTTGG+AGG | - | chr2_2:58644047-58644066 | Msa0260800:intron | 35.0% |
| !!! | TCTAAACTTGCTACCCTTTT+TGG | - | chr2_2:58644113-58644132 | Msa0260800:intron | 35.0% |
| CATATCAGCTGTAAAGAACA+TGG | - | chr2_2:58644577-58644596 | Msa0260800:five_prime_UTR | 35.0% | |
| TTCACTTTCTCAACCAACTT+AGG | + | chr2_2:58644638-58644657 | None:intergenic | 35.0% | |
| ! | TTTGGGTTTCTTGCATGTAG+TGG | - | chr2_2:58640510-58640529 | Msa0260800:intron | 40.0% |
| ACACATGATCTTGCATCAGA+TGG | + | chr2_2:58641029-58641048 | None:intergenic | 40.0% | |
| TCATCAATAGGAGATGCTTC+TGG | - | chr2_2:58641050-58641069 | Msa0260800:intron | 40.0% | |
| CAACATTCTGATCAGTGGAT+TGG | + | chr2_2:58641109-58641128 | None:intergenic | 40.0% | |
| ! | CAGAATGTTGCTTATTCTGC+TGG | - | chr2_2:58641119-58641138 | Msa0260800:intron | 40.0% |
| TTTGTTCAGATTCCGCTATG+CGG | - | chr2_2:58641315-58641334 | Msa0260800:CDS | 40.0% | |
| ATATTAACGCTACCGCATAG+CGG | + | chr2_2:58641330-58641349 | None:intergenic | 40.0% | |
| ATCCTGTAAGTTTCTTGAGC+TGG | - | chr2_2:58641504-58641523 | Msa0260800:CDS | 40.0% | |
| AACCAGCTCAAGAAACTTAC+AGG | + | chr2_2:58641509-58641528 | None:intergenic | 40.0% | |
| ! | TAGTTGCCTTGTTGCATATC+TGG | - | chr2_2:58641580-58641599 | Msa0260800:CDS | 40.0% |
| TAGGTCATGCAAGCAGATAA+TGG | - | chr2_2:58642099-58642118 | Msa0260800:intron | 40.0% | |
| TCTTATGTCTATCTCATGCC+AGG | - | chr2_2:58642123-58642142 | Msa0260800:intron | 40.0% | |
| TCCGTCTTTCAACAACCAAT+TGG | - | chr2_2:58642225-58642244 | Msa0260800:intron | 40.0% | |
| CCATAAGGTGAAATATAGCC+AGG | + | chr2_2:58642255-58642274 | None:intergenic | 40.0% | |
| CCTGGCTATATTTCACCTTA+TGG | - | chr2_2:58642252-58642271 | Msa0260800:CDS | 40.0% | |
| GATGGAAGTAACTCACCATA+AGG | + | chr2_2:58642270-58642289 | None:intergenic | 40.0% | |
| GAATCCCATGAGTATGTTGA+TGG | + | chr2_2:58642288-58642307 | None:intergenic | 40.0% | |
| GAAAAGATCGATCTACCACT+CGG | + | chr2_2:58642369-58642388 | None:intergenic | 40.0% | |
| ! | TTTTCTTCACAGAGTCGTAC+TGG | - | chr2_2:58642384-58642403 | Msa0260800:CDS | 40.0% |
| GAGTTGCTCACATTAGATGA+GGG | + | chr2_2:58642435-58642454 | None:intergenic | 40.0% | |
| TGAGTTGCTCACATTAGATG+AGG | + | chr2_2:58642436-58642455 | None:intergenic | 40.0% | |
| AGCAACTCATCAGAAGTGAA+GGG | - | chr2_2:58642447-58642466 | Msa0260800:CDS | 40.0% | |
| AAAACAGAACGGAGGAAGTA+AGG | + | chr2_2:58642544-58642563 | None:intergenic | 40.0% | |
| !! | TGTTTTCAGGCATCCATTTC+TGG | - | chr2_2:58642786-58642805 | Msa0260800:intron | 40.0% |
| ATTGCATCTGAATGGAGAAC+AGG | + | chr2_2:58642813-58642832 | None:intergenic | 40.0% | |
| CATTCAGATGCAATGCCAAA+GGG | - | chr2_2:58642819-58642838 | Msa0260800:intron | 40.0% | |
| GAAGCTGAAACTCAGAAACA+AGG | - | chr2_2:58642956-58642975 | Msa0260800:intron | 40.0% | |
| !! | TCTGGAGATAAGAGTGTCAA+TGG | - | chr2_2:58643056-58643075 | Msa0260800:intron | 40.0% |
| TCAATGGTGACACCAAAATC+AGG | - | chr2_2:58643072-58643091 | Msa0260800:intron | 40.0% | |
| ! | AGAGCATCAAGTACGATGTA+TGG | - | chr2_2:58643186-58643205 | Msa0260800:intron | 40.0% |
| GAGCATCAAGTACGATGTAT+GGG | - | chr2_2:58643187-58643206 | Msa0260800:intron | 40.0% | |
| GTACACCTAATGGCAATAAG+AGG | - | chr2_2:58643213-58643232 | Msa0260800:intron | 40.0% | |
| CAGAATCGAATGGAAGAGAA+AGG | - | chr2_2:58643260-58643279 | Msa0260800:intron | 40.0% | |
| CTCTGTTCTGTTAAGACCTA+CGG | - | chr2_2:58643333-58643352 | Msa0260800:CDS | 40.0% | |
| ! | AACGCTAGTGGTCAATTTTG+TGG | - | chr2_2:58643440-58643459 | Msa0260800:intron | 40.0% |
| TGGCAGCAAGATAAATGGAA+CGG | - | chr2_2:58643512-58643531 | Msa0260800:intron | 40.0% | |
| ACGGATATTTCCCTGTCAAA+TGG | - | chr2_2:58643531-58643550 | Msa0260800:intron | 40.0% | |
| GCTTGTGATCATTATTCTCG+AGG | + | chr2_2:58643601-58643620 | None:intergenic | 40.0% | |
| ! | TTCCAGATTCATTTTCCGCA+AGG | - | chr2_2:58643752-58643771 | Msa0260800:CDS | 40.0% |
| TACCTTGCGGAAAATGAATC+TGG | + | chr2_2:58643757-58643776 | None:intergenic | 40.0% | |
| TCTCTTGCATGACTTTCTGA+CGG | + | chr2_2:58643853-58643872 | None:intergenic | 40.0% | |
| TGTACATTGGTATGTGGCAT+AGG | + | chr2_2:58643890-58643909 | None:intergenic | 40.0% | |
| TATGCCACATACCAATGTAC+AGG | - | chr2_2:58643889-58643908 | Msa0260800:intron | 40.0% | |
| CAAACCTGTACATTGGTATG+TGG | + | chr2_2:58643896-58643915 | None:intergenic | 40.0% | |
| !!! | TTTTTTCGGTCGGACTAGTT+TGG | + | chr2_2:58644459-58644478 | None:intergenic | 40.0% |
| GAAGACTTAACAAGTGCACT+TGG | - | chr2_2:58644545-58644564 | Msa0260800:five_prime_UTR | 40.0% | |
| ATCAGCTGTAAAGAACATGG+AGG | - | chr2_2:58644580-58644599 | Msa0260800:five_prime_UTR | 40.0% | |
| GTTGGTTGTAAAGAACATGG+AGG | - | chr2_2:58644610-58644629 | Msa0260800:five_prime_UTR | 40.0% | |
| CACATGCAAGCTTACCATGT+TGG | + | chr2_2:58640819-58640838 | None:intergenic | 45.0% | |
| AAGGTTTCTTCAAAGGGTGG+TGG | - | chr2_2:58640996-58641015 | Msa0260800:CDS | 45.0% | |
| ACTGACGAATAGGGAACCAT+GGG | + | chr2_2:58641183-58641202 | None:intergenic | 45.0% | |
| AGGACATCAGAGATGATGTC+GGG | + | chr2_2:58641941-58641960 | None:intergenic | 45.0% | |
| CAGGACATCAGAGATGATGT+CGG | + | chr2_2:58641942-58641961 | None:intergenic | 45.0% | |
| TACTTTCCTGTGAACACACC+TGG | - | chr2_2:58642168-58642187 | Msa0260800:intron | 45.0% | |
| TGGTTGTTGAAAGACGGAAC+CGG | + | chr2_2:58642223-58642242 | None:intergenic | 45.0% | |
| ATATAGCCAGGGGATCCAAT+TGG | + | chr2_2:58642243-58642262 | None:intergenic | 45.0% | |
| ACCACACAAGATGTAGCACA+AGG | - | chr2_2:58642315-58642334 | Msa0260800:CDS | 45.0% | |
| CCACACAAGATGTAGCACAA+GGG | - | chr2_2:58642316-58642335 | Msa0260800:CDS | 45.0% | |
| GAGCAACTCATCAGAAGTGA+AGG | - | chr2_2:58642446-58642465 | Msa0260800:CDS | 45.0% | |
| !!! | CCTTGTTTGCTTGTTTTGGC+TGG | + | chr2_2:58642518-58642537 | None:intergenic | 45.0% |
| CCAGCCAAAACAAGCAAACA+AGG | - | chr2_2:58642515-58642534 | Msa0260800:CDS | 45.0% | |
| TGAACTGTAGGGGATTTCGT+AGG | - | chr2_2:58642685-58642704 | Msa0260800:intron | 45.0% | |
| ATGGAGAACAGGACCAGAAA+TGG | + | chr2_2:58642802-58642821 | None:intergenic | 45.0% | |
| CCTTTGGCATTGCATCTGAA+TGG | + | chr2_2:58642821-58642840 | None:intergenic | 45.0% | |
| CCATTCAGATGCAATGCCAA+AGG | - | chr2_2:58642818-58642837 | Msa0260800:intron | 45.0% | |
| AAGCAACAAGTACCAAGGGA+TGG | - | chr2_2:58642922-58642941 | Msa0260800:intron | 45.0% | |
| AGCAACAAGTACCAAGGGAT+GGG | - | chr2_2:58642923-58642942 | Msa0260800:intron | 45.0% | |
| TCGAGCCTCTTATTGCCATT+AGG | + | chr2_2:58643221-58643240 | None:intergenic | 45.0% | |
| TCAGGATGCACAGAATCGAA+TGG | - | chr2_2:58643250-58643269 | Msa0260800:intron | 45.0% | |
| ATAAAACACAAACGGGCCGT+AGG | + | chr2_2:58643352-58643371 | None:intergenic | 45.0% | |
| ATCCACTCGTCCAATCATCT+CGG | + | chr2_2:58643471-58643490 | None:intergenic | 45.0% | |
| ATATGCCGTAGCTGAGGATT+TGG | + | chr2_2:58643575-58643594 | None:intergenic | 45.0% | |
| AGGATAATATGCCGTAGCTG+AGG | + | chr2_2:58643581-58643600 | None:intergenic | 45.0% | |
| TGGATGAGTGCATGTGATTG+TGG | - | chr2_2:58644018-58644037 | Msa0260800:intron | 45.0% | |
| GGATGAGTGCATGTGATTGT+GGG | - | chr2_2:58644019-58644038 | Msa0260800:intron | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | - | chr2_2:58644592-58644611 | Msa0260800:five_prime_UTR | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | - | chr2_2:58644592-58644611 | Msa0260800:five_prime_UTR | 45.0% | |
| !!! | TTTATTTTTTTTATATTTTG+TGG | - | chr2_2:58640868-58640887 | Msa0260800:intron | 5.0% |
| ACGAATAGGGAACCATGGGA+GGG | + | chr2_2:58641179-58641198 | None:intergenic | 50.0% | |
| CACTGACGAATAGGGAACCA+TGG | + | chr2_2:58641184-58641203 | None:intergenic | 50.0% | |
| !! | TTATGTCGGCGCTGATGCTA+TGG | - | chr2_2:58641472-58641491 | Msa0260800:CDS | 50.0% |
| CTCATGCCAGGATATCAGAC+TGG | - | chr2_2:58642135-58642154 | Msa0260800:intron | 50.0% | |
| GAGTAGCCAGTCTGATATCC+TGG | + | chr2_2:58642144-58642163 | None:intergenic | 50.0% | |
| TGATACTGGACATCGACACC+AGG | + | chr2_2:58642189-58642208 | None:intergenic | 50.0% | |
| !! | TGGTGTCGATGTCCAGTATC+AGG | - | chr2_2:58642188-58642207 | Msa0260800:intron | 50.0% |
| CAGTATCAGGTTTACCCTCC+CGG | - | chr2_2:58642201-58642220 | Msa0260800:intron | 50.0% | |
| GGTTGTTGAAAGACGGAACC+GGG | + | chr2_2:58642222-58642241 | None:intergenic | 50.0% | |
| CAACAACCAATTGGATCCCC+TGG | - | chr2_2:58642234-58642253 | Msa0260800:intron | 50.0% | |
| CCCTTGTGCTACATCTTGTG+TGG | + | chr2_2:58642319-58642338 | None:intergenic | 50.0% | |
| GAATTGGCCAGTAAACCGAG+TGG | - | chr2_2:58642351-58642370 | Msa0260800:CDS | 50.0% | |
| CGATCTACCACTCGGTTTAC+TGG | + | chr2_2:58642361-58642380 | None:intergenic | 50.0% | |
| ! | TCACAGAGTCGTACTGGTAG+TGG | - | chr2_2:58642390-58642409 | Msa0260800:CDS | 50.0% |
| CTCAGTACTAACCCATCCCT+TGG | + | chr2_2:58642937-58642956 | None:intergenic | 50.0% | |
| GTATGGGCGAGTACACCTAA+TGG | - | chr2_2:58643203-58643222 | Msa0260800:intron | 50.0% | |
| GAGGCTCGACAATGCATTTC+AGG | - | chr2_2:58643232-58643251 | Msa0260800:intron | 50.0% | |
| TGAGTTCAGGTCAACGCTAG+TGG | - | chr2_2:58643428-58643447 | Msa0260800:intron | 50.0% | |
| TGTGGAGTAGCCGAGATGAT+TGG | - | chr2_2:58643458-58643477 | Msa0260800:intron | 50.0% | |
| GACGAATAGGGAACCATGGG+AGG | + | chr2_2:58641180-58641199 | None:intergenic | 55.0% | |
| TCGACACCAGGTGTGTTCAC+AGG | + | chr2_2:58642177-58642196 | None:intergenic | 55.0% | |
| CGGGAGGGTAAACCTGATAC+TGG | + | chr2_2:58642203-58642222 | None:intergenic | 55.0% | |
| GTTGAAAGACGGAACCGGGA+GGG | + | chr2_2:58642218-58642237 | None:intergenic | 55.0% | |
| TGTTGAAAGACGGAACCGGG+AGG | + | chr2_2:58642219-58642238 | None:intergenic | 55.0% | |
| GCGACGGGAAAAGAACCCTT+TGG | + | chr2_2:58642837-58642856 | None:intergenic | 55.0% | |
| AGCCGAGATGATTGGACGAG+TGG | - | chr2_2:58643466-58643485 | Msa0260800:intron | 55.0% | |
| CCATGGGAGGGAAGCTAACC+TGG | + | chr2_2:58641167-58641186 | None:intergenic | 60.0% | |
| !! | CCAGGTTAGCTTCCCTCCCA+TGG | - | chr2_2:58641164-58641183 | Msa0260800:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 58640121 | 58644664 | 58640121 | ID=Msa0260800;Name=Msa0260800 |
| chr2_2 | mRNA | 58640121 | 58644664 | 58640121 | ID=Msa0260800-mRNA-1;Parent=Msa0260800;Name=Msa0260800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=480|1|0.88|1|1|1|9|0|594 |
| chr2_2 | exon | 58640121 | 58640246 | 58640121 | ID=Msa0260800-mRNA-1:exon:18043;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58640875 | 58641027 | 58640875 | ID=Msa0260800-mRNA-1:exon:18042;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58641136 | 58641348 | 58641136 | ID=Msa0260800-mRNA-1:exon:18041;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58641472 | 58641990 | 58641472 | ID=Msa0260800-mRNA-1:exon:18040;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58642249 | 58642683 | 58642249 | ID=Msa0260800-mRNA-1:exon:18039;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58643277 | 58643353 | 58643277 | ID=Msa0260800-mRNA-1:exon:18038;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58643618 | 58643786 | 58643618 | ID=Msa0260800-mRNA-1:exon:18037;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58643962 | 58644032 | 58643962 | ID=Msa0260800-mRNA-1:exon:18036;Parent=Msa0260800-mRNA-1 |
| chr2_2 | exon | 58644163 | 58644664 | 58644163 | ID=Msa0260800-mRNA-1:exon:18035;Parent=Msa0260800-mRNA-1 |
| chr2_2 | five_prime_UTR | 58644185 | 58644664 | 58644185 | ID=Msa0260800-mRNA-1:five_prime_utr;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58644163 | 58644184 | 58644163 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58643962 | 58644032 | 58643962 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58643618 | 58643786 | 58643618 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58643277 | 58643353 | 58643277 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58642249 | 58642683 | 58642249 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58641472 | 58641990 | 58641472 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58641136 | 58641348 | 58641136 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58640875 | 58641027 | 58640875 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| chr2_2 | CDS | 58640121 | 58640246 | 58640121 | ID=Msa0260800-mRNA-1:cds;Parent=Msa0260800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
