Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260790 | XP_003595919.1 | 88.721 | 594 | 6 | 2 | 1 | 543 | 1 | 584 | 0.0 | 1057 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260790 | sp|Q9LJE5|ECT2_ARATH | 53.814 | 236 | 82 | 6 | 287 | 502 | 338 | 566 | 5.40e-70 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260790 | G7IT77 | 88.721 | 594 | 6 | 2 | 1 | 543 | 1 | 584 | 0.0 | 1057 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204780 | Msa0260790 | 0.964283 | 3.928050e-123 | -8.615850e-47 |
| Msa0260790 | Msa0260800 | 0.966423 | 6.693333e-126 | -8.615850e-47 |
| Msa0260790 | Msa0328380 | 0.805226 | 1.478461e-49 | -8.615850e-47 |
| Msa0260790 | Msa0588020 | 0.827388 | 1.608548e-54 | -8.615850e-47 |
| Msa0260790 | Msa0599260 | 0.821023 | 5.032070e-53 | -8.615850e-47 |
| Msa0260790 | Msa1224690 | 0.816176 | 6.328964e-52 | -8.615850e-47 |
| Msa0260790 | Msa1374800 | -0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0260790 | Msa1451830 | -0.803659 | 3.136148e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260790 | MtrunA17_Chr2g0309651 | 88.721 | 594 | 6 | 2 | 1 | 543 | 1 | 584 | 0.0 | 1057 |
| Msa0260790 | MtrunA17_Chr2g0293641 | 41.632 | 478 | 205 | 19 | 70 | 502 | 46 | 494 | 3.59e-85 | 278 |
| Msa0260790 | MtrunA17_Chr4g0069011 | 40.558 | 466 | 228 | 15 | 70 | 502 | 11 | 460 | 8.95e-84 | 273 |
| Msa0260790 | MtrunA17_Chr4g0000071 | 63.102 | 187 | 63 | 2 | 318 | 502 | 337 | 519 | 4.49e-72 | 242 |
| Msa0260790 | MtrunA17_Chr8g0380431 | 50.196 | 255 | 95 | 8 | 276 | 504 | 299 | 547 | 8.45e-68 | 228 |
| Msa0260790 | MtrunA17_Chr2g0277111 | 66.434 | 143 | 48 | 0 | 360 | 502 | 268 | 410 | 1.53e-65 | 221 |
| Msa0260790 | MtrunA17_Chr7g0253191 | 65.753 | 146 | 42 | 1 | 357 | 502 | 414 | 551 | 3.37e-60 | 210 |
| Msa0260790 | MtrunA17_Chr6g0461531 | 52.239 | 201 | 66 | 4 | 322 | 502 | 349 | 539 | 1.50e-58 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260790 | AT1G79270.2 | 44.313 | 422 | 175 | 10 | 91 | 502 | 63 | 434 | 9.70e-99 | 308 |
| Msa0260790 | AT1G79270.4 | 44.313 | 422 | 175 | 10 | 91 | 502 | 63 | 434 | 9.70e-99 | 308 |
| Msa0260790 | AT1G79270.3 | 44.313 | 422 | 175 | 10 | 91 | 502 | 63 | 434 | 9.70e-99 | 308 |
| Msa0260790 | AT1G79270.1 | 44.313 | 422 | 175 | 10 | 91 | 502 | 78 | 449 | 2.20e-98 | 308 |
| Msa0260790 | AT1G48110.2 | 38.116 | 467 | 226 | 13 | 70 | 502 | 12 | 449 | 1.21e-78 | 259 |
| Msa0260790 | AT1G48110.1 | 38.116 | 467 | 226 | 13 | 70 | 502 | 12 | 449 | 1.21e-78 | 259 |
| Msa0260790 | AT3G17330.2 | 60.656 | 183 | 69 | 1 | 325 | 504 | 116 | 298 | 6.00e-72 | 238 |
| Msa0260790 | AT3G13060.1 | 51.653 | 242 | 93 | 5 | 306 | 531 | 316 | 549 | 2.32e-71 | 238 |
| Msa0260790 | AT3G17330.1 | 40.199 | 403 | 190 | 13 | 116 | 504 | 35 | 400 | 4.10e-71 | 239 |
| Msa0260790 | AT3G17330.3 | 40.199 | 403 | 190 | 13 | 116 | 504 | 35 | 400 | 4.10e-71 | 239 |
| Msa0260790 | AT3G13460.2 | 53.814 | 236 | 82 | 6 | 287 | 502 | 335 | 563 | 4.92e-71 | 240 |
| Msa0260790 | AT3G13060.3 | 56.338 | 213 | 71 | 4 | 306 | 502 | 294 | 500 | 5.17e-71 | 239 |
| Msa0260790 | AT3G13060.6 | 56.338 | 213 | 71 | 4 | 306 | 502 | 294 | 500 | 5.17e-71 | 239 |
| Msa0260790 | AT3G13460.1 | 53.814 | 236 | 82 | 6 | 287 | 502 | 338 | 566 | 5.49e-71 | 240 |
| Msa0260790 | AT3G13060.4 | 56.338 | 213 | 71 | 4 | 306 | 502 | 306 | 512 | 5.55e-71 | 239 |
| Msa0260790 | AT3G13460.4 | 53.814 | 236 | 82 | 6 | 287 | 502 | 337 | 565 | 5.73e-71 | 240 |
| Msa0260790 | AT3G13060.2 | 56.338 | 213 | 71 | 4 | 306 | 502 | 316 | 522 | 5.88e-71 | 239 |
| Msa0260790 | AT1G09810.2 | 60.753 | 186 | 72 | 1 | 317 | 502 | 133 | 317 | 2.17e-70 | 232 |
| Msa0260790 | AT1G09810.3 | 60.753 | 186 | 72 | 1 | 317 | 502 | 156 | 340 | 2.27e-70 | 233 |
| Msa0260790 | AT1G09810.1 | 60.753 | 186 | 72 | 1 | 317 | 502 | 175 | 359 | 2.58e-70 | 233 |
| Msa0260790 | AT1G55500.4 | 53.881 | 219 | 78 | 4 | 303 | 502 | 324 | 538 | 2.26e-69 | 234 |
| Msa0260790 | AT1G55500.1 | 53.881 | 219 | 78 | 4 | 303 | 502 | 268 | 482 | 2.33e-69 | 233 |
| Msa0260790 | AT1G55500.6 | 53.881 | 219 | 78 | 4 | 303 | 502 | 281 | 495 | 2.45e-69 | 233 |
| Msa0260790 | AT1G55500.2 | 53.881 | 219 | 78 | 4 | 303 | 502 | 324 | 538 | 2.99e-69 | 234 |
| Msa0260790 | AT1G55500.5 | 53.881 | 219 | 78 | 4 | 303 | 502 | 324 | 538 | 3.53e-69 | 234 |
| Msa0260790 | AT1G55500.3 | 53.881 | 219 | 78 | 4 | 303 | 502 | 311 | 525 | 3.68e-69 | 233 |
| Msa0260790 | AT5G61020.2 | 56.701 | 194 | 64 | 4 | 322 | 502 | 197 | 383 | 3.60e-65 | 220 |
| Msa0260790 | AT5G61020.1 | 56.701 | 194 | 64 | 4 | 322 | 502 | 199 | 385 | 4.06e-65 | 220 |
| Msa0260790 | AT5G58190.2 | 57.542 | 179 | 68 | 3 | 328 | 502 | 275 | 449 | 6.01e-64 | 218 |
| Msa0260790 | AT5G58190.1 | 57.542 | 179 | 68 | 3 | 328 | 502 | 274 | 448 | 6.53e-64 | 218 |
| Msa0260790 | AT1G27960.3 | 56.906 | 181 | 63 | 3 | 322 | 502 | 215 | 380 | 3.15e-62 | 212 |
| Msa0260790 | AT3G03950.3 | 56.906 | 181 | 74 | 1 | 322 | 502 | 193 | 369 | 3.17e-62 | 211 |
| Msa0260790 | AT3G03950.2 | 56.906 | 181 | 74 | 1 | 322 | 502 | 189 | 365 | 3.43e-62 | 210 |
| Msa0260790 | AT3G03950.1 | 56.906 | 181 | 74 | 1 | 322 | 502 | 190 | 366 | 4.20e-62 | 210 |
| Msa0260790 | AT1G27960.1 | 56.906 | 181 | 63 | 3 | 322 | 502 | 289 | 454 | 2.48e-61 | 211 |
| Msa0260790 | AT3G13460.3 | 46.203 | 158 | 50 | 6 | 303 | 432 | 346 | 496 | 1.16e-29 | 122 |
| Msa0260790 | AT3G13060.5 | 43.357 | 143 | 59 | 4 | 306 | 432 | 316 | 452 | 5.79e-25 | 108 |
| Msa0260790 | AT1G27960.2 | 48.214 | 112 | 43 | 3 | 322 | 433 | 289 | 385 | 1.50e-20 | 94.7 |
| Msa0260790 | AT4G11970.5 | 30.726 | 179 | 89 | 5 | 355 | 514 | 44 | 206 | 5.11e-15 | 77.4 |
| Msa0260790 | AT4G11970.2 | 30.726 | 179 | 89 | 5 | 355 | 514 | 44 | 206 | 5.33e-15 | 77.0 |
| Msa0260790 | AT4G11970.3 | 30.726 | 179 | 89 | 5 | 355 | 514 | 44 | 206 | 6.54e-15 | 77.0 |
| Msa0260790 | AT4G11970.1 | 30.726 | 179 | 89 | 5 | 355 | 514 | 44 | 206 | 2.13e-14 | 75.9 |
| Msa0260790 | AT4G11970.4 | 30.726 | 179 | 89 | 5 | 355 | 514 | 44 | 206 | 2.13e-14 | 75.9 |
Find 136 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTTGTTGCTTTCATATT+AGG | 0.139929 | 2_2:+58624417 | None:intergenic |
| TATTCTGCTGGTAGTTATTA+TGG | 0.145347 | 2_2:-58626193 | Msa0260790:CDS |
| TCAACAAAAGTATGGATTTC+TGG | 0.157531 | 2_2:-58623837 | Msa0260790:CDS |
| GAAAAGTGCATGATCATATT+TGG | 0.231336 | 2_2:+58624203 | None:intergenic |
| TTAAACTCTGGAGGTAATTC+TGG | 0.231621 | 2_2:-58624291 | Msa0260790:CDS |
| GTTACCTTGTTTGCTTGTTT+TGG | 0.232110 | 2_2:+58624807 | None:intergenic |
| GAGGCTCGACAATGCATTTC+AGG | 0.241866 | 2_2:-58624097 | Msa0260790:CDS |
| ATATTGATCTGTCCTGATTT+TGG | 0.248014 | 2_2:+58624245 | None:intergenic |
| GATTATAAGTGCTTCTTCTA+TGG | 0.253854 | 2_2:-58626739 | Msa0260790:exon |
| CCTGGCTATATTTCACCTTA+TGG | 0.275162 | 2_2:-58625074 | Msa0260790:CDS |
| GTGTCTCTACTATTTGTTAC+AGG | 0.280235 | 2_2:+58623709 | None:intergenic |
| GGTTGTATTATAAGAGCTTT+TGG | 0.307205 | 2_2:-58626761 | Msa0260790:five_prime_UTR |
| AGTGGATTTCAACAAAAGTA+TGG | 0.322061 | 2_2:-58623845 | Msa0260790:CDS |
| TCATATTTGGTTGGAAAATC+AGG | 0.322709 | 2_2:+58624216 | None:intergenic |
| CGATCTACCACTCGGTTTAC+TGG | 0.323936 | 2_2:+58624968 | None:intergenic |
| TGAATAGAATGTCTATATAA+AGG | 0.324868 | 2_2:+58627132 | None:intergenic |
| ATTTCTGGCAGCAAGATAAA+TGG | 0.351407 | 2_2:-58623822 | Msa0260790:CDS |
| TTTGTTGTGTCTAGATTTCT+GGG | 0.358011 | 2_2:+58626996 | None:intergenic |
| ATATGCCGTAGCTGAGGATT+TGG | 0.367053 | 2_2:+58623757 | None:intergenic |
| AGGGAATCGTTATAATGAAT+TGG | 0.374688 | 2_2:-58624991 | Msa0260790:CDS |
| TTTATAATGTGCCATTTGAC+AGG | 0.415396 | 2_2:+58623787 | None:intergenic |
| TCCGTCTTTCAACAACCAAT+TGG | 0.421822 | 2_2:-58625101 | Msa0260790:CDS |
| ATGTTCTTTACAACCAACTT+AGG | 0.426914 | 2_2:+58622719 | None:intergenic |
| TGGTGTCGATGTCCAGTATC+AGG | 0.429764 | 2_2:-58625138 | Msa0260790:CDS |
| TAGGTCATGCAAGCAGATAA+TGG | 0.430474 | 2_2:-58625227 | Msa0260790:CDS |
| TCGAGCCTCTTATTGCCATT+AGG | 0.430781 | 2_2:+58624111 | None:intergenic |
| CGGGAGGGTAAACCTGATAC+TGG | 0.436348 | 2_2:+58625126 | None:intergenic |
| GCGACGGGAAAAGAACCCTT+TGG | 0.439928 | 2_2:+58624495 | None:intergenic |
| AGATCATGTGTATCATCAAT+AGG | 0.445206 | 2_2:-58626286 | Msa0260790:CDS |
| TTCACTTTCTCAACCAACTT+AGG | 0.446586 | 2_2:+58622689 | None:intergenic |
| ATGGAGAACAGGACCAGAAA+TGG | 0.448479 | 2_2:+58624530 | None:intergenic |
| AGAGCATCAAGTACGATGTA+TGG | 0.449332 | 2_2:-58624143 | Msa0260790:CDS |
| TGTGGAGTAGCCGAGATGAT+TGG | 0.450864 | 2_2:-58623871 | Msa0260790:CDS |
| TTTGGGTTTCTTGCATGTAG+TGG | 0.453515 | 2_2:-58626811 | Msa0260790:five_prime_UTR |
| GTTGAAGAAACATCTAATAT+TGG | 0.457075 | 2_2:+58624849 | None:intergenic |
| GATAATCTTATTATGTTGGT+TGG | 0.457530 | 2_2:+58627092 | None:intergenic |
| TCATCAATAGGAGATGCTTC+TGG | 0.457910 | 2_2:-58626274 | Msa0260790:CDS |
| CAGAATGTTGCTTATTCTGC+TGG | 0.462148 | 2_2:-58626205 | Msa0260790:CDS |
| TATATTAAGGTTTCTTCAAA+GGG | 0.466093 | 2_2:-58626334 | Msa0260790:intron |
| TCAATGGTGACACCAAAATC+AGG | 0.467791 | 2_2:-58624257 | Msa0260790:CDS |
| TTATGTCGGCGCTGATGCTA+TGG | 0.468389 | 2_2:-58625852 | Msa0260790:CDS |
| CAGTATCAGGTTTACCCTCC+CGG | 0.470159 | 2_2:-58625125 | Msa0260790:CDS |
| CAACAACCAATTGGATCCCC+TGG | 0.475726 | 2_2:-58625092 | Msa0260790:CDS |
| ATTGCATCTGAATGGAGAAC+AGG | 0.476903 | 2_2:+58624519 | None:intergenic |
| CAACATTCTGATCAGTGGAT+TGG | 0.479321 | 2_2:+58626218 | None:intergenic |
| TACCGAAAAGAAAAGGAATA+CGG | 0.480275 | 2_2:+58624035 | None:intergenic |
| CCATAAGGTGAAATATAGCC+AGG | 0.480961 | 2_2:+58625074 | None:intergenic |
| GAGTAGCCAGTCTGATATCC+TGG | 0.482425 | 2_2:+58625185 | None:intergenic |
| CCTAGAACAGTTAATGCAAA+AGG | 0.482609 | 2_2:-58624318 | Msa0260790:CDS |
| GAATCCCATGAGTATGTTGA+TGG | 0.482741 | 2_2:+58625041 | None:intergenic |
| TTATATTAAGGTTTCTTCAA+AGG | 0.484480 | 2_2:-58626335 | Msa0260790:intron |
| AATGGATAATCTTATTATGT+TGG | 0.487408 | 2_2:+58627088 | None:intergenic |
| CCTTTGGCATTGCATCTGAA+TGG | 0.488787 | 2_2:+58624511 | None:intergenic |
| TGGTTGTTGAAAGACGGAAC+CGG | 0.490975 | 2_2:+58625106 | None:intergenic |
| AGAGAGAAAATGAAGAACAA+TGG | 0.492903 | 2_2:+58627195 | None:intergenic |
| TATGGAGAGCAAGAAAATCA+AGG | 0.500681 | 2_2:-58625878 | Msa0260790:CDS |
| ACGGATATTTCCCTGTCAAA+TGG | 0.501338 | 2_2:-58623798 | Msa0260790:CDS |
| TACTTTCCTGTGAACACACC+TGG | 0.502118 | 2_2:-58625158 | Msa0260790:CDS |
| GATAGCATACCGAAAAGAAA+AGG | 0.504322 | 2_2:+58624028 | None:intergenic |
| TATGTAGAAAACTTTGCGAC+GGG | 0.505982 | 2_2:+58624480 | None:intergenic |
| GCAAAAGGTACTTTAAACTC+TGG | 0.507406 | 2_2:-58624303 | Msa0260790:CDS |
| GGTTGTTGAAAGACGGAACC+GGG | 0.507448 | 2_2:+58625107 | None:intergenic |
| TCGCAGAGTCGTACTGGTAG+TGG | 0.507501 | 2_2:-58624936 | Msa0260790:CDS |
| TCTGGAGATAAGAGTGTCAA+TGG | 0.513122 | 2_2:-58624273 | Msa0260790:CDS |
| TATTATGGATACTACTATCC+AGG | 0.514216 | 2_2:-58626178 | Msa0260790:intron |
| TACTTCCATCAACATACTCA+TGG | 0.517546 | 2_2:-58625046 | Msa0260790:CDS |
| CACATGCAAGCTTACCATGT+TGG | 0.518787 | 2_2:+58626506 | None:intergenic |
| AGTGCATGATCATATTTGGT+TGG | 0.527014 | 2_2:+58624207 | None:intergenic |
| ATATAGCCAGGGGATCCAAT+TGG | 0.527493 | 2_2:+58625086 | None:intergenic |
| CCCTTGTGCTACATCTTGTG+TGG | 0.528879 | 2_2:+58625010 | None:intergenic |
| GTACACCTAATGGCAATAAG+AGG | 0.531549 | 2_2:-58624116 | Msa0260790:CDS |
| TCTTATGTCTATCTCATGCC+AGG | 0.534138 | 2_2:-58625203 | Msa0260790:CDS |
| GATGGAAGTAACTCACCATA+AGG | 0.536031 | 2_2:+58625059 | None:intergenic |
| TCCAATTGGTTGTTGAAAGA+CGG | 0.536670 | 2_2:+58625100 | None:intergenic |
| GTATGGGCGAGTACACCTAA+TGG | 0.536841 | 2_2:-58624126 | Msa0260790:CDS |
| TCACTTAATGAGCAGAATCA+AGG | 0.540048 | 2_2:-58624342 | Msa0260790:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_2:-58622702 | Msa0260790:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_2:-58622732 | Msa0260790:CDS |
| AAGGTTTCTTCAAAGGGTGG+TGG | 0.540738 | 2_2:-58626328 | Msa0260790:CDS |
| TCGACACCAGGTGTGTTCAC+AGG | 0.547002 | 2_2:+58625152 | None:intergenic |
| CCAGCCAAAACAAGCAAACA+AGG | 0.547719 | 2_2:-58624811 | Msa0260790:intron |
| CCATTCAGATGCAATGCCAA+AGG | 0.548568 | 2_2:-58624511 | Msa0260790:CDS |
| CATTCAGATGCAATGCCAAA+GGG | 0.552432 | 2_2:-58624510 | Msa0260790:CDS |
| CAGAATCGAATGGAAGAGAA+AGG | 0.555397 | 2_2:-58624069 | Msa0260790:CDS |
| GAGCATCAAGTACGATGTAT+GGG | 0.559060 | 2_2:-58624142 | Msa0260790:CDS |
| GAGCAACTCATCAGAAGTGA+AGG | 0.569571 | 2_2:-58624880 | Msa0260790:CDS |
| CATATCAGCTGTAAAGAACA+TGG | 0.571245 | 2_2:-58622747 | Msa0260790:CDS |
| CTCAGTACTAACCCATCCCT+TGG | 0.572036 | 2_2:+58624395 | None:intergenic |
| TTATAATGTGCCATTTGACA+GGG | 0.573430 | 2_2:+58623788 | None:intergenic |
| GAAGACTTAACAAGTGCACT+TGG | 0.574492 | 2_2:-58622779 | Msa0260790:CDS |
| AGCAACAAGTACCAAGGGAT+GGG | 0.576647 | 2_2:-58624406 | Msa0260790:CDS |
| CTCATGCCAGGATATCAGAC+TGG | 0.577228 | 2_2:-58625191 | Msa0260790:CDS |
| ACCGAAAAGAAAAGGAATAC+GGG | 0.578211 | 2_2:+58624036 | None:intergenic |
| GTATGTAGAAAACTTTGCGA+CGG | 0.581650 | 2_2:+58624479 | None:intergenic |
| ACATACAATCAAGGAAAGAG+TGG | 0.582689 | 2_2:-58624462 | Msa0260790:CDS |
| GCTTGTGATCATTATTCTCG+AGG | 0.582868 | 2_2:+58623731 | None:intergenic |
| ATGAAAGCAACAAGTACCAA+GGG | 0.583635 | 2_2:-58624411 | Msa0260790:CDS |
| AGCCGAGATGATTGGACGAG+TGG | 0.583728 | 2_2:-58623863 | Msa0260790:CDS |
| ACTTCCATCAACATACTCAT+GGG | 0.589217 | 2_2:-58625045 | Msa0260790:CDS |
| ATTAAGGTTTCTTCAAAGGG+TGG | 0.589556 | 2_2:-58626331 | Msa0260790:intron |
| ATCCACTCGTCCAATCATCT+CGG | 0.591466 | 2_2:+58623861 | None:intergenic |
| AAGCAACAAGTACCAAGGGA+TGG | 0.592367 | 2_2:-58624407 | Msa0260790:CDS |
| TGAGTTCAGGTCAACGCTAG+TGG | 0.593166 | 2_2:-58623901 | Msa0260790:intron |
| GAAGAAACATCTAATATTGG+TGG | 0.594302 | 2_2:+58624852 | None:intergenic |
| ATAAGCAACATTCTGATCAG+TGG | 0.595793 | 2_2:+58626213 | None:intergenic |
| ATATTCCAAATCCTCAGCTA+CGG | 0.598835 | 2_2:-58623762 | Msa0260790:CDS |
| GAAAATCAAGGATATTATGT+CGG | 0.602073 | 2_2:-58625866 | Msa0260790:CDS |
| AGAATGATTACAGGTTATGG+TGG | 0.612198 | 2_2:-58625905 | Msa0260790:intron |
| AAAGGTACTTTAAACTCTGG+AGG | 0.617094 | 2_2:-58624300 | Msa0260790:CDS |
| TGAGTTGCTCACATTAGATG+AGG | 0.617233 | 2_2:+58624893 | None:intergenic |
| TGATACTGGACATCGACACC+AGG | 0.618053 | 2_2:+58625140 | None:intergenic |
| ATTTGGTTGGAAAATCAGGA+AGG | 0.619406 | 2_2:+58624220 | None:intergenic |
| CATAAGGTGAAATATAGCCA+GGG | 0.620198 | 2_2:+58625075 | None:intergenic |
| ACACATGATCTTGCATCAGA+TGG | 0.625382 | 2_2:+58626298 | None:intergenic |
| TAAGTTGGTTGTAAAGAACA+TGG | 0.629871 | 2_2:-58622717 | Msa0260790:CDS |
| TATGAAAGCAACAAGTACCA+AGG | 0.634095 | 2_2:-58624412 | Msa0260790:CDS |
| CATACAATCAAGGAAAGAGT+GGG | 0.635967 | 2_2:-58624461 | Msa0260790:CDS |
| TCAGGATGCACAGAATCGAA+TGG | 0.637168 | 2_2:-58624079 | Msa0260790:CDS |
| AGGATAATATGCCGTAGCTG+AGG | 0.638343 | 2_2:+58623751 | None:intergenic |
| ATGAATAAGAAGAAGCTGCA+TGG | 0.646230 | 2_2:-58626558 | Msa0260790:CDS |
| GAGTTGCTCACATTAGATGA+GGG | 0.650819 | 2_2:+58624894 | None:intergenic |
| TGGCAGCAAGATAAATGGAA+CGG | 0.653548 | 2_2:-58623817 | Msa0260790:CDS |
| AGCAACTCATCAGAAGTGAA+GGG | 0.655536 | 2_2:-58624879 | Msa0260790:CDS |
| AAATAGTAGAGACACTCAAG+AGG | 0.657180 | 2_2:-58623701 | Msa0260790:intron |
| GTTGAAAGACGGAACCGGGA+GGG | 0.658514 | 2_2:+58625111 | None:intergenic |
| GAAGCTGAAACTCAGAAACA+AGG | 0.666505 | 2_2:-58624373 | Msa0260790:CDS |
| ACCACACAAGATGTAGCACA+AGG | 0.668664 | 2_2:-58625011 | Msa0260790:CDS |
| GAAAAGATCGATCTACCACT+CGG | 0.689012 | 2_2:+58624960 | None:intergenic |
| ATAAGGTGAAATATAGCCAG+GGG | 0.699657 | 2_2:+58625076 | None:intergenic |
| GTTGAGAAAGTGAATGACTG+AGG | 0.708180 | 2_2:-58622680 | None:intergenic |
| TGAACATAATAATTCCAACA+TGG | 0.712248 | 2_2:-58626520 | Msa0260790:intron |
| TGTTGAAAGACGGAACCGGG+AGG | 0.716372 | 2_2:+58625110 | None:intergenic |
| GTTGGTTGTAAAGAACATGG+AGG | 0.739574 | 2_2:-58622714 | Msa0260790:CDS |
| CCACACAAGATGTAGCACAA+GGG | 0.750655 | 2_2:-58625010 | Msa0260790:CDS |
| ATCAGCTGTAAAGAACATGG+AGG | 0.773499 | 2_2:-58622744 | Msa0260790:CDS |
| GAATTGGCCAGTAAACCGAG+TGG | 0.774424 | 2_2:-58624975 | Msa0260790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAATAATCTAATTTA+AGG | + | chr2_2:58625311-58625330 | None:intergenic | 10.0% |
| !!! | ATTTTTGAAAAAGAAAATCT+GGG | + | chr2_2:58622932-58622951 | None:intergenic | 15.0% |
| !!! | TATTTTTGAAAAAGAAAATC+TGG | + | chr2_2:58622933-58622952 | None:intergenic | 15.0% |
| !!! | AAATATTGTTTTTTGTCTTT+TGG | - | chr2_2:58623055-58623074 | Msa0260790:intron | 15.0% |
| !!! | AATATTGTTTTTTGTCTTTT+GGG | - | chr2_2:58623056-58623075 | Msa0260790:intron | 15.0% |
| !!! | ATGTTTTCTTATTGTATTTT+TGG | - | chr2_2:58623514-58623533 | Msa0260790:intron | 15.0% |
| !!! | ATTTGTTGTATGTTATATTA+AGG | - | chr2_2:58623537-58623556 | Msa0260790:intron | 15.0% |
| !!! | TTTGAATTCTGAAATAAATT+TGG | - | chr2_2:58624376-58624395 | Msa0260790:CDS | 15.0% |
| !!! | TTGAATTCTGAAATAAATTT+GGG | - | chr2_2:58624377-58624396 | Msa0260790:CDS | 15.0% |
| !! | GAAAATAACATGTTAATAAA+AGG | - | chr2_2:58624418-58624437 | Msa0260790:CDS | 15.0% |
| !!! | GTAAATATCTAAATTTTTGT+TGG | - | chr2_2:58624627-58624646 | Msa0260790:intron | 15.0% |
| !!! | AATTTTTGTTGGTTTTATTT+AGG | - | chr2_2:58624638-58624657 | Msa0260790:intron | 15.0% |
| !!! | TTTCTCTTTCTAAAATTATA+AGG | + | chr2_2:58625206-58625225 | None:intergenic | 15.0% |
| !! | CATTTATTAAATATTGTGAA+AGG | + | chr2_2:58626632-58626651 | None:intergenic | 15.0% |
| !! | TAGTAGAAAAATAAAGAATT+GGG | + | chr2_2:58626772-58626791 | None:intergenic | 15.0% |
| !! | ATAGTAGAAAAATAAAGAAT+TGG | + | chr2_2:58626773-58626792 | None:intergenic | 15.0% |
| !!! | AATTCTTTATTTTTCTACTA+TGG | - | chr2_2:58626772-58626791 | Msa0260790:five_prime_UTR | 15.0% |
| !! | AAGACTTCTAAATAAATTAT+TGG | + | chr2_2:58626818-58626837 | None:intergenic | 15.0% |
| !! | TAATTGTAACACAATTAAAA+AGG | + | chr2_2:58626848-58626867 | None:intergenic | 15.0% |
| !! | TATAAATGAAAAGTAAAGAA+GGG | + | chr2_2:58626874-58626893 | None:intergenic | 15.0% |
| !! | ATATAAATGAAAAGTAAAGA+AGG | + | chr2_2:58626875-58626894 | None:intergenic | 15.0% |
| !!! | TCTTTGCTTATATATAATTT+TGG | - | chr2_2:58627070-58627089 | Msa0260790:five_prime_UTR | 15.0% |
| !! | TGAATAGAATGTCTATATAA+AGG | + | chr2_2:58622755-58622774 | None:intergenic | 20.0% |
| !! | AATGGATAATCTTATTATGT+TGG | + | chr2_2:58622799-58622818 | None:intergenic | 20.0% |
| !!! | TCTTTTTCAAAAATATCTTC+TGG | - | chr2_2:58622938-58622957 | Msa0260790:intron | 20.0% |
| !!! | CTTTTTCAAAAATATCTTCT+GGG | - | chr2_2:58622939-58622958 | Msa0260790:intron | 20.0% |
| !! | TTATATTAAGGTTTCTTCAA+AGG | - | chr2_2:58623549-58623568 | Msa0260790:intron | 20.0% |
| !! | TATATTAAGGTTTCTTCAAA+GGG | - | chr2_2:58623550-58623569 | Msa0260790:intron | 20.0% |
| !!! | TTTATGTTTTTCCTTTCTTA+CGG | - | chr2_2:58623955-58623974 | Msa0260790:intron | 20.0% |
| !!! | TCATGATAATTGTGTTATTA+TGG | - | chr2_2:58624100-58624119 | Msa0260790:CDS | 20.0% |
| !! | TTTAAGCATATATCTTAGAA+AGG | - | chr2_2:58624301-58624320 | Msa0260790:CDS | 20.0% |
| !! | TTAAGCATATATCTTAGAAA+GGG | - | chr2_2:58624302-58624321 | Msa0260790:CDS | 20.0% |
| !! | AAACAATAGTTAAAACAGAA+CGG | + | chr2_2:58625113-58625132 | None:intergenic | 20.0% |
| !! | AAACTATATATTGAACTGTT+GGG | - | chr2_2:58625232-58625251 | Msa0260790:intron | 20.0% |
| !! | AGATTATTCTAAATAGTTTG+TGG | - | chr2_2:58625317-58625336 | Msa0260790:intron | 20.0% |
| !! | AATGTCAAAAAAGAATTCAT+TGG | + | chr2_2:58626549-58626568 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTGACATTATTGA+TGG | - | chr2_2:58626554-58626573 | Msa0260790:CDS | 20.0% |
| !! | CAAAGTAATTAATAACTCTT+TGG | - | chr2_2:58626715-58626734 | Msa0260790:intron | 20.0% |
| !! | TGAGTAGATTATGAAAATTT+GGG | + | chr2_2:58626904-58626923 | None:intergenic | 20.0% |
| !! | ATGAGTAGATTATGAAAATT+TGG | + | chr2_2:58626905-58626924 | None:intergenic | 20.0% |
| !!! | AAGAAATGAAATGGTTTTTT+CGG | + | chr2_2:58627033-58627052 | None:intergenic | 20.0% |
| !! | CAAAAACTAAAGAAATGAAA+TGG | + | chr2_2:58627042-58627061 | None:intergenic | 20.0% |
| ! | GATAATCTTATTATGTTGGT+TGG | + | chr2_2:58622795-58622814 | None:intergenic | 25.0% |
| ! | AAAGAAGAAAGAGAAAAACA+CGG | + | chr2_2:58622824-58622843 | None:intergenic | 25.0% |
| ! | TGAACATAATAATTCCAACA+TGG | - | chr2_2:58623364-58623383 | Msa0260790:intron | 25.0% |
| ! | GAAAATCAAGGATATTATGT+CGG | - | chr2_2:58624018-58624037 | Msa0260790:intron | 25.0% |
| ! | TCAGATTCAAGTATTTATAC+AGG | + | chr2_2:58624188-58624207 | None:intergenic | 25.0% |
| !!! | TTCTGAAATAAATTTGGGAT+TGG | - | chr2_2:58624382-58624401 | Msa0260790:CDS | 25.0% |
| ! | TATTGCATTACACATGAAAA+TGG | - | chr2_2:58624450-58624469 | Msa0260790:CDS | 25.0% |
| !!! | ATTTTTTCCTTGAATGTTAC+AGG | + | chr2_2:58624519-58624538 | None:intergenic | 25.0% |
| ! | TAACATTCAAGGAAAAAATG+TGG | - | chr2_2:58624520-58624539 | Msa0260790:CDS | 25.0% |
| ! | GTTGAAGAAACATCTAATAT+TGG | + | chr2_2:58625038-58625057 | None:intergenic | 25.0% |
| ! | GAAACTATATATTGAACTGT+TGG | - | chr2_2:58625231-58625250 | Msa0260790:intron | 25.0% |
| !! | AAGTTTTCTACATACAATCA+AGG | - | chr2_2:58625413-58625432 | Msa0260790:intron | 25.0% |
| !!! | TTAGGAAAGTTGTTTTGATA+GGG | + | chr2_2:58625452-58625471 | None:intergenic | 25.0% |
| !!! | ATTAGGAAAGTTGTTTTGAT+AGG | + | chr2_2:58625453-58625472 | None:intergenic | 25.0% |
| ! | ATGAGCAAATAAAACACAAA+CGG | + | chr2_2:58625915-58625934 | None:intergenic | 25.0% |
| !!! | TTTTGATAATTGTTGAGTTC+AGG | - | chr2_2:58625970-58625989 | Msa0260790:intron | 25.0% |
| ! | AAGATACAGAAGAAATAACT+AGG | + | chr2_2:58626256-58626275 | None:intergenic | 25.0% |
| ! | TTAGTAAGAAGTAAGAACTT+TGG | + | chr2_2:58626502-58626521 | None:intergenic | 25.0% |
| !! | TTTAGAATAGTTTGTCAACT+AGG | + | chr2_2:58626655-58626674 | None:intergenic | 25.0% |
| !!! | ATACCCTTTTTGGAATAATT+TGG | - | chr2_2:58626679-58626698 | Msa0260790:intron | 25.0% |
| ! | ACTCCAAATTATTCCAAAAA+GGG | + | chr2_2:58626685-58626704 | None:intergenic | 25.0% |
| ! | AACTCCAAATTATTCCAAAA+AGG | + | chr2_2:58626686-58626705 | None:intergenic | 25.0% |
| !!! | TTTTTGGAATAATTTGGAGT+TGG | - | chr2_2:58626685-58626704 | Msa0260790:intron | 25.0% |
| !!! | TTTTGGAATAATTTGGAGTT+GGG | - | chr2_2:58626686-58626705 | Msa0260790:intron | 25.0% |
| ! | TGTAACACAATTAAAAAGGT+GGG | + | chr2_2:58626844-58626863 | None:intergenic | 25.0% |
| ! | TTGTAACACAATTAAAAAGG+TGG | + | chr2_2:58626845-58626864 | None:intergenic | 25.0% |
| !!! | ACTTATTTTTACTCGAAACT+CGG | - | chr2_2:58626960-58626979 | Msa0260790:five_prime_UTR | 25.0% |
| AGAGAGAAAATGAAGAACAA+TGG | + | chr2_2:58622692-58622711 | None:intergenic | 30.0% | |
| ! | TTTGGTGTAAAAATGAGAGA+TGG | + | chr2_2:58622852-58622871 | None:intergenic | 30.0% |
| GGTGCTAAAAAAATGGAATT+TGG | + | chr2_2:58622870-58622889 | None:intergenic | 30.0% | |
| ! | ATTTCTGGGTGCTAAAAAAA+TGG | + | chr2_2:58622877-58622896 | None:intergenic | 30.0% |
| ! | TTTGTTGTGTCTAGATTTCT+GGG | + | chr2_2:58622891-58622910 | None:intergenic | 30.0% |
| !! | TTTTGTTGTGTCTAGATTTC+TGG | + | chr2_2:58622892-58622911 | None:intergenic | 30.0% |
| ! | ATCTGGGTAAGAACTATTTT+TGG | + | chr2_2:58622916-58622935 | None:intergenic | 30.0% |
| ! | TTTTGTCTCTTCAACTGAAA+AGG | + | chr2_2:58623007-58623026 | None:intergenic | 30.0% |
| !!! | CATGTAGTGGATTGTTTTAA+GGG | - | chr2_2:58623086-58623105 | Msa0260790:intron | 30.0% |
| !!! | ATGTAGTGGATTGTTTTAAG+GGG | - | chr2_2:58623087-58623106 | Msa0260790:intron | 30.0% |
| !!! | TTAAGGGGTTTTGAGAATTT+TGG | - | chr2_2:58623102-58623121 | Msa0260790:intron | 30.0% |
| ! | GGTTGTATTATAAGAGCTTT+TGG | - | chr2_2:58623123-58623142 | Msa0260790:intron | 30.0% |
| GATTATAAGTGCTTCTTCTA+TGG | - | chr2_2:58623145-58623164 | Msa0260790:intron | 30.0% | |
| AGATCATGTGTATCATCAAT+AGG | - | chr2_2:58623598-58623617 | Msa0260790:intron | 30.0% | |
| TATTCTGCTGGTAGTTATTA+TGG | - | chr2_2:58623691-58623710 | Msa0260790:intron | 30.0% | |
| TATTATGGATACTACTATCC+AGG | - | chr2_2:58623706-58623725 | Msa0260790:CDS | 30.0% | |
| ! | ATTGATAACACTGACGAATA+GGG | + | chr2_2:58623752-58623771 | None:intergenic | 30.0% |
| TAATCATTCTACCGTAAGAA+AGG | + | chr2_2:58623969-58623988 | None:intergenic | 30.0% | |
| ! | CTGATAATTTGCATTGCATT+AGG | - | chr2_2:58624204-58624223 | Msa0260790:CDS | 30.0% |
| !!! | AATTTGGGATTGGCTAATTT+TGG | - | chr2_2:58624392-58624411 | Msa0260790:CDS | 30.0% |
| AGGGAATCGTTATAATGAAT+TGG | - | chr2_2:58624893-58624912 | Msa0260790:CDS | 30.0% | |
| GAAGAAACATCTAATATTGG+TGG | + | chr2_2:58625035-58625054 | None:intergenic | 30.0% | |
| !! | AATAGTTTGTGGTGTTTTTC+AGG | - | chr2_2:58625328-58625347 | Msa0260790:intron | 30.0% |
| !!! | TAGGAAAGTTGTTTTGATAG+GGG | + | chr2_2:58625451-58625470 | None:intergenic | 30.0% |
| !! | GTACTTGTTGCTTTCATATT+AGG | + | chr2_2:58625470-58625489 | None:intergenic | 30.0% |
| ! | ATATTGATCTGTCCTGATTT+TGG | + | chr2_2:58625642-58625661 | None:intergenic | 30.0% |
| TCATATTTGGTTGGAAAATC+AGG | + | chr2_2:58625671-58625690 | None:intergenic | 30.0% | |
| ! | GAAAAGTGCATGATCATATT+TGG | + | chr2_2:58625684-58625703 | None:intergenic | 30.0% |
| TACCGAAAAGAAAAGGAATA+CGG | + | chr2_2:58625852-58625871 | None:intergenic | 30.0% | |
| TGAGCAAATAAAACACAAAC+GGG | + | chr2_2:58625914-58625933 | None:intergenic | 30.0% | |
| ! | AGTGGATTTCAACAAAAGTA+TGG | - | chr2_2:58626039-58626058 | Msa0260790:intron | 30.0% |
| ! | TCAACAAAAGTATGGATTTC+TGG | - | chr2_2:58626047-58626066 | Msa0260790:intron | 30.0% |
| !! | TTATAATGTGCCATTTGACA+GGG | + | chr2_2:58626099-58626118 | None:intergenic | 30.0% |
| !! | TTTATAATGTGCCATTTGAC+AGG | + | chr2_2:58626100-58626119 | None:intergenic | 30.0% |
| TGTATCAAGAACATCGATAT+TGG | - | chr2_2:58626362-58626381 | Msa0260790:intron | 30.0% | |
| GTAAAATCAAACCTGTACAT+TGG | + | chr2_2:58626459-58626478 | None:intergenic | 30.0% | |
| !! | AGAACTTTGGAATAAGAACA+AGG | + | chr2_2:58626489-58626508 | None:intergenic | 30.0% |
| CAACCACAATTATGCAAAAA+TGG | + | chr2_2:58626602-58626621 | None:intergenic | 30.0% | |
| ! | CATTTTTGCATAATTGTGGT+TGG | - | chr2_2:58626600-58626619 | Msa0260790:intron | 30.0% |
| ! | TCTAAACTTGATACCCTTTT+TGG | - | chr2_2:58626669-58626688 | Msa0260790:intron | 30.0% |
| !!! | AATGAAATGGTTTTTTCGGT+CGG | + | chr2_2:58627029-58627048 | None:intergenic | 30.0% |
| ATGTTCTTTACAACCAACTT+AGG | + | chr2_2:58627168-58627187 | None:intergenic | 30.0% | |
| !! | TAAGTTGGTTGTAAAGAACA+TGG | - | chr2_2:58627167-58627186 | Msa0260790:five_prime_UTR | 30.0% |
| AAAGAGAAAAACACGGTGAA+TGG | + | chr2_2:58622817-58622836 | None:intergenic | 35.0% | |
| !!! | GCATGTAGTGGATTGTTTTA+AGG | - | chr2_2:58623085-58623104 | Msa0260790:intron | 35.0% |
| ATGGCTGCTGAATTGAAAAA+AGG | - | chr2_2:58623164-58623183 | Msa0260790:intron | 35.0% | |
| ATGAATAAGAAGAAGCTGCA+TGG | - | chr2_2:58623326-58623345 | Msa0260790:intron | 35.0% | |
| ATTAAGGTTTCTTCAAAGGG+TGG | - | chr2_2:58623553-58623572 | Msa0260790:intron | 35.0% | |
| !!! | GCTTCTGGTAGTTTTAAAGA+AGG | - | chr2_2:58623625-58623644 | Msa0260790:intron | 35.0% |
| ATAAGCAACATTCTGATCAG+TGG | + | chr2_2:58623674-58623693 | None:intergenic | 35.0% | |
| ! | GATTGATAACACTGACGAAT+AGG | + | chr2_2:58623753-58623772 | None:intergenic | 35.0% |
| TCTTACGGTAGAATGATTAC+AGG | - | chr2_2:58623970-58623989 | Msa0260790:intron | 35.0% | |
| GGTAGAATGATTACAGGTTA+TGG | - | chr2_2:58623976-58623995 | Msa0260790:intron | 35.0% | |
| AGAATGATTACAGGTTATGG+TGG | - | chr2_2:58623979-58623998 | Msa0260790:intron | 35.0% | |
| !!! | ACAGGTTATGGTGGATTTTA+TGG | - | chr2_2:58623988-58624007 | Msa0260790:intron | 35.0% |
| TATGGAGAGCAAGAAAATCA+AGG | - | chr2_2:58624006-58624025 | Msa0260790:intron | 35.0% | |
| ! | AAGTTTCTTGAGCTGGTTTA+TGG | - | chr2_2:58624071-58624090 | Msa0260790:CDS | 35.0% |
| AATTGACCAGATATGCAACA+AGG | + | chr2_2:58624147-58624166 | None:intergenic | 35.0% | |
| CTCACAACAACATGAAACAA+TGG | + | chr2_2:58624250-58624269 | None:intergenic | 35.0% | |
| TCCAATTGGTTGTTGAAAGA+CGG | + | chr2_2:58624787-58624806 | None:intergenic | 35.0% | |
| ATAAGGTGAAATATAGCCAG+GGG | + | chr2_2:58624811-58624830 | None:intergenic | 35.0% | |
| CATAAGGTGAAATATAGCCA+GGG | + | chr2_2:58624812-58624831 | None:intergenic | 35.0% | |
| TACTTCCATCAACATACTCA+TGG | - | chr2_2:58624838-58624857 | Msa0260790:CDS | 35.0% | |
| ACTTCCATCAACATACTCAT+GGG | - | chr2_2:58624839-58624858 | Msa0260790:CDS | 35.0% | |
| !! | GTTACCTTGTTTGCTTGTTT+TGG | + | chr2_2:58625080-58625099 | None:intergenic | 35.0% |
| CAATAGTTAAAACAGAACGG+AGG | + | chr2_2:58625110-58625129 | None:intergenic | 35.0% | |
| TTAGACAGCGACAAATAAAC+AGG | + | chr2_2:58625141-58625160 | None:intergenic | 35.0% | |
| TATGTAGAAAACTTTGCGAC+GGG | + | chr2_2:58625407-58625426 | None:intergenic | 35.0% | |
| GTATGTAGAAAACTTTGCGA+CGG | + | chr2_2:58625408-58625427 | None:intergenic | 35.0% | |
| ACATACAATCAAGGAAAGAG+TGG | - | chr2_2:58625422-58625441 | Msa0260790:intron | 35.0% | |
| CATACAATCAAGGAAAGAGT+GGG | - | chr2_2:58625423-58625442 | Msa0260790:intron | 35.0% | |
| TATGAAAGCAACAAGTACCA+AGG | - | chr2_2:58625472-58625491 | Msa0260790:intron | 35.0% | |
| ATGAAAGCAACAAGTACCAA+GGG | - | chr2_2:58625473-58625492 | Msa0260790:intron | 35.0% | |
| TCACTTAATGAGCAGAATCA+AGG | - | chr2_2:58625542-58625561 | Msa0260790:intron | 35.0% | |
| ! | CCTTTTGCATTAACTGTTCT+AGG | + | chr2_2:58625569-58625588 | None:intergenic | 35.0% |
| CCTAGAACAGTTAATGCAAA+AGG | - | chr2_2:58625566-58625585 | Msa0260790:intron | 35.0% | |
| !! | GCAAAAGGTACTTTAAACTC+TGG | - | chr2_2:58625581-58625600 | Msa0260790:intron | 35.0% |
| !! | AAAGGTACTTTAAACTCTGG+AGG | - | chr2_2:58625584-58625603 | Msa0260790:intron | 35.0% |
| ! | TTAAACTCTGGAGGTAATTC+TGG | - | chr2_2:58625593-58625612 | Msa0260790:intron | 35.0% |
| ATTTGGTTGGAAAATCAGGA+AGG | + | chr2_2:58625667-58625686 | None:intergenic | 35.0% | |
| AGTGCATGATCATATTTGGT+TGG | + | chr2_2:58625680-58625699 | None:intergenic | 35.0% | |
| ! | TCCCGTATTCCTTTTCTTTT+CGG | - | chr2_2:58625847-58625866 | Msa0260790:CDS | 35.0% |
| ACCGAAAAGAAAAGGAATAC+GGG | + | chr2_2:58625851-58625870 | None:intergenic | 35.0% | |
| GATAGCATACCGAAAAGAAA+AGG | + | chr2_2:58625859-58625878 | None:intergenic | 35.0% | |
| !! | ATTTCTGGCAGCAAGATAAA+TGG | - | chr2_2:58626062-58626081 | Msa0260790:intron | 35.0% |
| ATATTCCAAATCCTCAGCTA+CGG | - | chr2_2:58626122-58626141 | Msa0260790:intron | 35.0% | |
| ! | GTGTCTCTACTATTTGTTAC+AGG | + | chr2_2:58626178-58626197 | None:intergenic | 35.0% |
| AAATAGTAGAGACACTCAAG+AGG | - | chr2_2:58626183-58626202 | Msa0260790:CDS | 35.0% | |
| TTGAGCATTTCAATACCTTG+CGG | + | chr2_2:58626327-58626346 | None:intergenic | 35.0% | |
| ! | ATTTTTACGAAACCGTCAGA+AGG | - | chr2_2:58626394-58626413 | Msa0260790:intron | 35.0% |
| !! | GGACCATTTTTGCATAATTG+TGG | - | chr2_2:58626596-58626615 | Msa0260790:intron | 35.0% |
| ! | TTTTGCATAATTGTGGTTGG+AGG | - | chr2_2:58626603-58626622 | Msa0260790:intron | 35.0% |
| !! | CTATGGTTGATGTGTTCTTT+TGG | - | chr2_2:58626789-58626808 | Msa0260790:five_prime_UTR | 35.0% |
| CATATCAGCTGTAAAGAACA+TGG | - | chr2_2:58627137-58627156 | Msa0260790:five_prime_UTR | 35.0% | |
| TTCACTTTCTCAACCAACTT+AGG | + | chr2_2:58627198-58627217 | None:intergenic | 35.0% | |
| ! | TTTGGGTTTCTTGCATGTAG+TGG | - | chr2_2:58623073-58623092 | Msa0260790:intron | 40.0% |
| ACACATGATCTTGCATCAGA+TGG | + | chr2_2:58623589-58623608 | None:intergenic | 40.0% | |
| TCATCAATAGGAGATGCTTC+TGG | - | chr2_2:58623610-58623629 | Msa0260790:intron | 40.0% | |
| CAACATTCTGATCAGTGGAT+TGG | + | chr2_2:58623669-58623688 | None:intergenic | 40.0% | |
| ! | CAGAATGTTGCTTATTCTGC+TGG | - | chr2_2:58623679-58623698 | Msa0260790:intron | 40.0% |
| TTTGTTCAGATTCCGCTATG+CGG | - | chr2_2:58623875-58623894 | Msa0260790:CDS | 40.0% | |
| ATATTAACGCTACCGCATAG+CGG | + | chr2_2:58623890-58623909 | None:intergenic | 40.0% | |
| ATCCTGTAAGTTTCTTGAGC+TGG | - | chr2_2:58624064-58624083 | Msa0260790:CDS | 40.0% | |
| AACCAGCTCAAGAAACTTAC+AGG | + | chr2_2:58624069-58624088 | None:intergenic | 40.0% | |
| ! | TAGTTGCCTTGTTGCATATC+TGG | - | chr2_2:58624138-58624157 | Msa0260790:CDS | 40.0% |
| CTGATGTCCTGTAACATTCA+AGG | - | chr2_2:58624509-58624528 | Msa0260790:CDS | 40.0% | |
| TAGGTCATGCAAGCAGATAA+TGG | - | chr2_2:58624657-58624676 | Msa0260790:intron | 40.0% | |
| TCTTATGTCTATCTCATGCC+AGG | - | chr2_2:58624681-58624700 | Msa0260790:intron | 40.0% | |
| TCCGTCTTTCAACAACCAAT+TGG | - | chr2_2:58624783-58624802 | Msa0260790:intron | 40.0% | |
| CCATAAGGTGAAATATAGCC+AGG | + | chr2_2:58624813-58624832 | None:intergenic | 40.0% | |
| CCTGGCTATATTTCACCTTA+TGG | - | chr2_2:58624810-58624829 | Msa0260790:intron | 40.0% | |
| GATGGAAGTAACTCACCATA+AGG | + | chr2_2:58624828-58624847 | None:intergenic | 40.0% | |
| GAATCCCATGAGTATGTTGA+TGG | + | chr2_2:58624846-58624865 | None:intergenic | 40.0% | |
| GAAAAGATCGATCTACCACT+CGG | + | chr2_2:58624927-58624946 | None:intergenic | 40.0% | |
| GAGTTGCTCACATTAGATGA+GGG | + | chr2_2:58624993-58625012 | None:intergenic | 40.0% | |
| TGAGTTGCTCACATTAGATG+AGG | + | chr2_2:58624994-58625013 | None:intergenic | 40.0% | |
| AGCAACTCATCAGAAGTGAA+GGG | - | chr2_2:58625005-58625024 | Msa0260790:CDS | 40.0% | |
| AAAACAGAACGGAGGAAGTA+AGG | + | chr2_2:58625102-58625121 | None:intergenic | 40.0% | |
| TTGAACTGTTGGGATTTCGT+AGG | - | chr2_2:58625242-58625261 | Msa0260790:intron | 40.0% | |
| !!! | GTTTTTCAGGCATCCATTTC+TGG | - | chr2_2:58625341-58625360 | Msa0260790:intron | 40.0% |
| ATTGCATCTGAATGGAGAAC+AGG | + | chr2_2:58625368-58625387 | None:intergenic | 40.0% | |
| CATTCAGATGCAATGCCAAA+GGG | - | chr2_2:58625374-58625393 | Msa0260790:intron | 40.0% | |
| GAAGCTGAAACTCAGAAACA+AGG | - | chr2_2:58625511-58625530 | Msa0260790:intron | 40.0% | |
| !! | TCTGGAGATAAGAGTGTCAA+TGG | - | chr2_2:58625611-58625630 | Msa0260790:intron | 40.0% |
| TCAATGGTGACACCAAAATC+AGG | - | chr2_2:58625627-58625646 | Msa0260790:intron | 40.0% | |
| ! | AGAGCATCAAGTACGATGTA+TGG | - | chr2_2:58625741-58625760 | Msa0260790:intron | 40.0% |
| GAGCATCAAGTACGATGTAT+GGG | - | chr2_2:58625742-58625761 | Msa0260790:intron | 40.0% | |
| GTACACCTAATGGCAATAAG+AGG | - | chr2_2:58625768-58625787 | Msa0260790:intron | 40.0% | |
| CAGAATCGAATGGAAGAGAA+AGG | - | chr2_2:58625815-58625834 | Msa0260790:intron | 40.0% | |
| CTCTGTTCTGTTAAGACCTA+CGG | - | chr2_2:58625888-58625907 | Msa0260790:CDS | 40.0% | |
| ! | AACGCTAGTGGTCAATTTTG+TGG | - | chr2_2:58625995-58626014 | Msa0260790:intron | 40.0% |
| TGGCAGCAAGATAAATGGAA+CGG | - | chr2_2:58626067-58626086 | Msa0260790:intron | 40.0% | |
| ACGGATATTTCCCTGTCAAA+TGG | - | chr2_2:58626086-58626105 | Msa0260790:intron | 40.0% | |
| GCTTGTGATCATTATTCTCG+AGG | + | chr2_2:58626156-58626175 | None:intergenic | 40.0% | |
| ! | TTCCAGATTCATTTTCCGCA+AGG | - | chr2_2:58626309-58626328 | Msa0260790:CDS | 40.0% |
| TACCTTGCGGAAAATGAATC+TGG | + | chr2_2:58626314-58626333 | None:intergenic | 40.0% | |
| TGTACATTGGTATGTGGCAT+AGG | + | chr2_2:58626446-58626465 | None:intergenic | 40.0% | |
| TATGCCACATACCAATGTAC+AGG | - | chr2_2:58626445-58626464 | Msa0260790:intron | 40.0% | |
| CAAACCTGTACATTGGTATG+TGG | + | chr2_2:58626452-58626471 | None:intergenic | 40.0% | |
| !!! | TTTTTTCGGTCGGACTAGTT+TGG | + | chr2_2:58627019-58627038 | None:intergenic | 40.0% |
| GAAGACTTAACAAGTGCACT+TGG | - | chr2_2:58627105-58627124 | Msa0260790:five_prime_UTR | 40.0% | |
| ATCAGCTGTAAAGAACATGG+AGG | - | chr2_2:58627140-58627159 | Msa0260790:five_prime_UTR | 40.0% | |
| GTTGGTTGTAAAGAACATGG+AGG | - | chr2_2:58627170-58627189 | Msa0260790:five_prime_UTR | 40.0% | |
| CACATGCAAGCTTACCATGT+TGG | + | chr2_2:58623381-58623400 | None:intergenic | 45.0% | |
| AAGGTTTCTTCAAAGGGTGG+TGG | - | chr2_2:58623556-58623575 | Msa0260790:intron | 45.0% | |
| ACTGACGAATAGGGAACCAT+GGG | + | chr2_2:58623743-58623762 | None:intergenic | 45.0% | |
| AGGACATCAGAGATGATGTC+GGG | + | chr2_2:58624499-58624518 | None:intergenic | 45.0% | |
| CAGGACATCAGAGATGATGT+CGG | + | chr2_2:58624500-58624519 | None:intergenic | 45.0% | |
| TACTTTCCTGTGAACACACC+TGG | - | chr2_2:58624726-58624745 | Msa0260790:intron | 45.0% | |
| TGGTTGTTGAAAGACGGAAC+CGG | + | chr2_2:58624781-58624800 | None:intergenic | 45.0% | |
| ATATAGCCAGGGGATCCAAT+TGG | + | chr2_2:58624801-58624820 | None:intergenic | 45.0% | |
| ACCACACAAGATGTAGCACA+AGG | - | chr2_2:58624873-58624892 | Msa0260790:CDS | 45.0% | |
| CCACACAAGATGTAGCACAA+GGG | - | chr2_2:58624874-58624893 | Msa0260790:CDS | 45.0% | |
| ! | TTTTCTTCGCAGAGTCGTAC+TGG | - | chr2_2:58624942-58624961 | Msa0260790:CDS | 45.0% |
| GAGCAACTCATCAGAAGTGA+AGG | - | chr2_2:58625004-58625023 | Msa0260790:CDS | 45.0% | |
| !!! | CCTTGTTTGCTTGTTTTGGC+TGG | + | chr2_2:58625076-58625095 | None:intergenic | 45.0% |
| CCAGCCAAAACAAGCAAACA+AGG | - | chr2_2:58625073-58625092 | Msa0260790:CDS | 45.0% | |
| ATGGAGAACAGGACCAGAAA+TGG | + | chr2_2:58625357-58625376 | None:intergenic | 45.0% | |
| CCTTTGGCATTGCATCTGAA+TGG | + | chr2_2:58625376-58625395 | None:intergenic | 45.0% | |
| CCATTCAGATGCAATGCCAA+AGG | - | chr2_2:58625373-58625392 | Msa0260790:intron | 45.0% | |
| AAGCAACAAGTACCAAGGGA+TGG | - | chr2_2:58625477-58625496 | Msa0260790:intron | 45.0% | |
| AGCAACAAGTACCAAGGGAT+GGG | - | chr2_2:58625478-58625497 | Msa0260790:intron | 45.0% | |
| TCGAGCCTCTTATTGCCATT+AGG | + | chr2_2:58625776-58625795 | None:intergenic | 45.0% | |
| TCAGGATGCACAGAATCGAA+TGG | - | chr2_2:58625805-58625824 | Msa0260790:intron | 45.0% | |
| ATAAAACACAAACGGGCCGT+AGG | + | chr2_2:58625907-58625926 | None:intergenic | 45.0% | |
| ATCCACTCGTCCAATCATCT+CGG | + | chr2_2:58626026-58626045 | None:intergenic | 45.0% | |
| ATATGCCGTAGCTGAGGATT+TGG | + | chr2_2:58626130-58626149 | None:intergenic | 45.0% | |
| AGGATAATATGCCGTAGCTG+AGG | + | chr2_2:58626136-58626155 | None:intergenic | 45.0% | |
| TCTCTTGCATGACCTTCTGA+CGG | + | chr2_2:58626409-58626428 | None:intergenic | 45.0% | |
| TGGATGAGTGCATGTGATTG+TGG | - | chr2_2:58626574-58626593 | Msa0260790:intron | 45.0% | |
| GGATGAGTGCATGTGATTGT+GGG | - | chr2_2:58626575-58626594 | Msa0260790:intron | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | - | chr2_2:58627152-58627171 | Msa0260790:five_prime_UTR | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | - | chr2_2:58627152-58627171 | Msa0260790:five_prime_UTR | 45.0% | |
| !!! | TTTATTTTTTTTATATTTTG+TGG | - | chr2_2:58623428-58623447 | Msa0260790:intron | 5.0% |
| ACGAATAGGGAACCATGGGA+GGG | + | chr2_2:58623739-58623758 | None:intergenic | 50.0% | |
| CACTGACGAATAGGGAACCA+TGG | + | chr2_2:58623744-58623763 | None:intergenic | 50.0% | |
| !! | TTATGTCGGCGCTGATGCTA+TGG | - | chr2_2:58624032-58624051 | Msa0260790:intron | 50.0% |
| CTCATGCCAGGATATCAGAC+TGG | - | chr2_2:58624693-58624712 | Msa0260790:intron | 50.0% | |
| GAGTAGCCAGTCTGATATCC+TGG | + | chr2_2:58624702-58624721 | None:intergenic | 50.0% | |
| TGATACTGGACATCGACACC+AGG | + | chr2_2:58624747-58624766 | None:intergenic | 50.0% | |
| !! | TGGTGTCGATGTCCAGTATC+AGG | - | chr2_2:58624746-58624765 | Msa0260790:intron | 50.0% |
| CAGTATCAGGTTTACCCTCC+CGG | - | chr2_2:58624759-58624778 | Msa0260790:intron | 50.0% | |
| GGTTGTTGAAAGACGGAACC+GGG | + | chr2_2:58624780-58624799 | None:intergenic | 50.0% | |
| CAACAACCAATTGGATCCCC+TGG | - | chr2_2:58624792-58624811 | Msa0260790:intron | 50.0% | |
| CCCTTGTGCTACATCTTGTG+TGG | + | chr2_2:58624877-58624896 | None:intergenic | 50.0% | |
| GAATTGGCCAGTAAACCGAG+TGG | - | chr2_2:58624909-58624928 | Msa0260790:CDS | 50.0% | |
| CGATCTACCACTCGGTTTAC+TGG | + | chr2_2:58624919-58624938 | None:intergenic | 50.0% | |
| CTCAGTACTAACCCATCCCT+TGG | + | chr2_2:58625492-58625511 | None:intergenic | 50.0% | |
| GTATGGGCGAGTACACCTAA+TGG | - | chr2_2:58625758-58625777 | Msa0260790:intron | 50.0% | |
| GAGGCTCGACAATGCATTTC+AGG | - | chr2_2:58625787-58625806 | Msa0260790:intron | 50.0% | |
| TGAGTTCAGGTCAACGCTAG+TGG | - | chr2_2:58625983-58626002 | Msa0260790:intron | 50.0% | |
| TGTGGAGTAGCCGAGATGAT+TGG | - | chr2_2:58626013-58626032 | Msa0260790:intron | 50.0% | |
| GACGAATAGGGAACCATGGG+AGG | + | chr2_2:58623740-58623759 | None:intergenic | 55.0% | |
| TCGACACCAGGTGTGTTCAC+AGG | + | chr2_2:58624735-58624754 | None:intergenic | 55.0% | |
| CGGGAGGGTAAACCTGATAC+TGG | + | chr2_2:58624761-58624780 | None:intergenic | 55.0% | |
| GTTGAAAGACGGAACCGGGA+GGG | + | chr2_2:58624776-58624795 | None:intergenic | 55.0% | |
| TGTTGAAAGACGGAACCGGG+AGG | + | chr2_2:58624777-58624796 | None:intergenic | 55.0% | |
| ! | TCGCAGAGTCGTACTGGTAG+TGG | - | chr2_2:58624948-58624967 | Msa0260790:CDS | 55.0% |
| GCGACGGGAAAAGAACCCTT+TGG | + | chr2_2:58625392-58625411 | None:intergenic | 55.0% | |
| AGCCGAGATGATTGGACGAG+TGG | - | chr2_2:58626021-58626040 | Msa0260790:intron | 55.0% | |
| CCATGGGAGGGAAGCTAACC+TGG | + | chr2_2:58623727-58623746 | None:intergenic | 60.0% | |
| !! | CCAGGTTAGCTTCCCTCCCA+TGG | - | chr2_2:58623724-58623743 | Msa0260790:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 58622682 | 58627224 | 58622682 | ID=Msa0260790;Name=Msa0260790 |
| chr2_2 | mRNA | 58622682 | 58627224 | 58622682 | ID=Msa0260790-mRNA-1;Parent=Msa0260790;Name=Msa0260790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=482|0.85|0.87|1|1|1|8|0|543 |
| chr2_2 | exon | 58622682 | 58622807 | 58622682 | ID=Msa0260790-mRNA-1:exon:18051;Parent=Msa0260790-mRNA-1 |
| chr2_2 | exon | 58623702 | 58623914 | 58623702 | ID=Msa0260790-mRNA-1:exon:18050;Parent=Msa0260790-mRNA-1 |
| chr2_2 | exon | 58624038 | 58624556 | 58624038 | ID=Msa0260790-mRNA-1:exon:18049;Parent=Msa0260790-mRNA-1 |
| chr2_2 | exon | 58624812 | 58625246 | 58624812 | ID=Msa0260790-mRNA-1:exon:18048;Parent=Msa0260790-mRNA-1 |
| chr2_2 | exon | 58625838 | 58625914 | 58625838 | ID=Msa0260790-mRNA-1:exon:18047;Parent=Msa0260790-mRNA-1 |
| chr2_2 | exon | 58626179 | 58626347 | 58626179 | ID=Msa0260790-mRNA-1:exon:18046;Parent=Msa0260790-mRNA-1 |
| chr2_2 | exon | 58626521 | 58626591 | 58626521 | ID=Msa0260790-mRNA-1:exon:18045;Parent=Msa0260790-mRNA-1 |
| chr2_2 | exon | 58626721 | 58627224 | 58626721 | ID=Msa0260790-mRNA-1:exon:18044;Parent=Msa0260790-mRNA-1 |
| chr2_2 | five_prime_UTR | 58626743 | 58627224 | 58626743 | ID=Msa0260790-mRNA-1:five_prime_utr;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58626721 | 58626742 | 58626721 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58626521 | 58626591 | 58626521 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58626179 | 58626347 | 58626179 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58625838 | 58625914 | 58625838 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58624812 | 58625246 | 58624812 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58624038 | 58624556 | 58624038 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58623702 | 58623914 | 58623702 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| chr2_2 | CDS | 58622682 | 58622807 | 58622682 | ID=Msa0260790-mRNA-1:cds;Parent=Msa0260790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
