Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600460 | XP_013455731.1 | 94.662 | 281 | 14 | 1 | 1 | 281 | 1 | 280 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0467220 | Msa0600460 | 0.802627 | 5.128898e-49 | -8.615850e-47 |
| Msa0600460 | Msa0867120 | 0.804213 | 2.406704e-49 | -8.615850e-47 |
| Msa0600460 | Msa1088290 | 0.801007 | 1.103059e-48 | -8.615850e-47 |
| Msa0600460 | Msa1362090 | 0.802090 | 6.615068e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600460 | MtrunA17_Chr4g0025511 | 94.662 | 281 | 14 | 1 | 1 | 281 | 1 | 280 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600460 | AT5G22120.1 | 51.969 | 254 | 107 | 6 | 29 | 281 | 143 | 382 | 3.90e-81 | 249 |
Find 69 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGCTGAGGTGGTTTC+AGG | 0.103251 | 4_2:+41932983 | None:intergenic |
| TTCCCCTTCCACGCCGCTTT+GGG | 0.188822 | 4_2:+41935413 | None:intergenic |
| CCGCTTTGGGGTTGGACTTT+TGG | 0.198425 | 4_2:+41935426 | None:intergenic |
| TGTAACAGCAACTTCGTAAT+TGG | 0.283160 | 4_2:+41937436 | None:intergenic |
| GTTCATTTAATATGAGTATT+GGG | 0.319929 | 4_2:-41934061 | Msa0600460:CDS |
| GTTCCCCTTCCACGCCGCTT+TGG | 0.330904 | 4_2:+41935412 | None:intergenic |
| CTTCCACGCCGCTTTGGGGT+TGG | 0.348974 | 4_2:+41935418 | None:intergenic |
| GGGACCCTGTCACGCGGCTC+GGG | 0.349417 | 4_2:+41932896 | None:intergenic |
| CTGCGATTTCCTTTCTCCAT+TGG | 0.354698 | 4_2:+41937497 | None:intergenic |
| CCCTCCCCGAGCCGCGTGAC+AGG | 0.363283 | 4_2:-41932901 | Msa0600460:CDS |
| GTTCGATTATTGATGATGTT+GGG | 0.365130 | 4_2:-41935342 | Msa0600460:CDS |
| AATAGATTCTATGCTTTGTC+TGG | 0.366516 | 4_2:-41932726 | Msa0600460:three_prime_UTR |
| TGTTCATTTAATATGAGTAT+TGG | 0.375587 | 4_2:-41934062 | Msa0600460:CDS |
| TATAGTGATCGGTTACTTGA+TGG | 0.383715 | 4_2:-41935364 | Msa0600460:CDS |
| CAGGGTCCCGAGAACATAAA+AGG | 0.392402 | 4_2:-41932882 | Msa0600460:CDS |
| CTCAGTTCAATTAAAGCAAA+TGG | 0.397843 | 4_2:-41934014 | Msa0600460:intron |
| CGGGACCCTGTCACGCGGCT+CGG | 0.401103 | 4_2:+41932895 | None:intergenic |
| TCAATAGAATCTTGTGAAGC+AGG | 0.424057 | 4_2:+41937398 | None:intergenic |
| GGTTCGATTATTGATGATGT+TGG | 0.430653 | 4_2:-41935343 | Msa0600460:CDS |
| ATAGAATCTATTGAATGTTA+TGG | 0.433806 | 4_2:+41932737 | None:intergenic |
| CAACCCCAAAGCGGCGTGGA+AGG | 0.449688 | 4_2:-41935417 | Msa0600460:CDS |
| CCCTGTCACGCGGCTCGGGG+AGG | 0.455945 | 4_2:+41932900 | None:intergenic |
| ACCCCAAAGCGGCGTGGAAG+GGG | 0.466974 | 4_2:-41935415 | Msa0600460:CDS |
| TGGACTCGTTATTCACAACT+AGG | 0.472270 | 4_2:+41937456 | None:intergenic |
| AATTACCTTCTGCAGGAGTT+CGG | 0.480079 | 4_2:+41934883 | None:intergenic |
| AAGTCTGTTGTTCTAGTGCT+TGG | 0.486163 | 4_2:+41934984 | None:intergenic |
| CCTGTCACGCGGCTCGGGGA+GGG | 0.492544 | 4_2:+41932901 | None:intergenic |
| AAGATAAACTTTATAGTGAT+CGG | 0.492732 | 4_2:-41935375 | Msa0600460:CDS |
| CCTCTGTGCTGCTGTGGCAG+AGG | 0.496085 | 4_2:+41932954 | None:intergenic |
| AGAATCTTGTGAAGCAGGAT+TGG | 0.501265 | 4_2:+41937403 | None:intergenic |
| CCATTGGTTTCGATCTCAGA+AGG | 0.502831 | 4_2:+41937513 | None:intergenic |
| AGGAAATCGCAGTGAAGACT+TGG | 0.513959 | 4_2:-41937486 | Msa0600460:CDS |
| GTAGTTAACGATATAATTCA+AGG | 0.515420 | 4_2:-41932690 | Msa0600460:three_prime_UTR |
| GGTTTCGATCTCAGAAGGAA+TGG | 0.516768 | 4_2:+41937518 | None:intergenic |
| TCCCCTTCCACGCCGCTTTG+GGG | 0.517075 | 4_2:+41935414 | None:intergenic |
| AACCCCAAAGCGGCGTGGAA+GGG | 0.517415 | 4_2:-41935416 | Msa0600460:CDS |
| AGATCGAAACCAATGGAGAA+AGG | 0.524539 | 4_2:-41937506 | Msa0600460:exon |
| ACGATGGGCACTAACTTGTC+AGG | 0.527220 | 4_2:+41935496 | None:intergenic |
| AAAAGTTGAAAGATGAAGCA+TGG | 0.536060 | 4_2:-41932822 | Msa0600460:CDS |
| AGACAACAGAAGAACATGAT+TGG | 0.536931 | 4_2:+41935016 | None:intergenic |
| GGACCCTGTCACGCGGCTCG+GGG | 0.538389 | 4_2:+41932897 | None:intergenic |
| CCTCCCCGAGCCGCGTGACA+GGG | 0.544856 | 4_2:-41932900 | Msa0600460:CDS |
| AGGATGATTGCTAACAGCAT+GGG | 0.544930 | 4_2:-41932934 | Msa0600460:CDS |
| AATGTTATGGATACAATGAA+TGG | 0.555301 | 4_2:+41932750 | None:intergenic |
| GGACTCGTTATTCACAACTA+GGG | 0.561314 | 4_2:+41937457 | None:intergenic |
| AATTCTTCTTCTGCTGATGA+CGG | 0.565819 | 4_2:-41937374 | Msa0600460:intron |
| AAAGTTGAAAGATGAAGCAT+GGG | 0.566291 | 4_2:-41932821 | Msa0600460:CDS |
| ATAAAAGGCACGAAGATACA+AGG | 0.576376 | 4_2:-41932867 | Msa0600460:CDS |
| AAGCACTAGAACAACAGACT+TGG | 0.578002 | 4_2:-41934982 | Msa0600460:CDS |
| GAGGATGATTGCTAACAGCA+TGG | 0.578720 | 4_2:-41932935 | Msa0600460:CDS |
| TTCGATTATTGATGATGTTG+GGG | 0.580377 | 4_2:-41935341 | Msa0600460:CDS |
| AATCATCCTCTGTGCTGCTG+TGG | 0.585601 | 4_2:+41932948 | None:intergenic |
| TCTTGTGAAGCAGGATTGGT+CGG | 0.594648 | 4_2:+41937407 | None:intergenic |
| GAAGCAGGATTGGTCGGTGA+TGG | 0.602035 | 4_2:+41937413 | None:intergenic |
| GTATTCCGAACTCCTGCAGA+AGG | 0.603236 | 4_2:-41934888 | Msa0600460:intron |
| CCTTCTGAGATCGAAACCAA+TGG | 0.621819 | 4_2:-41937513 | Msa0600460:exon |
| GAAAGTGAGAGTGTGTTGAC+CGG | 0.637741 | 4_2:-41937548 | Msa0600460:five_prime_UTR |
| TAGAACAACAGACTTGGAGA+AGG | 0.647403 | 4_2:-41934976 | Msa0600460:CDS |
| TAAAATGTCTGAAGACACGA+TGG | 0.647729 | 4_2:+41935480 | None:intergenic |
| TAGTTAACGATATAATTCAA+GGG | 0.653539 | 4_2:-41932689 | Msa0600460:three_prime_UTR |
| AGTCCAACCCCAAAGCGGCG+TGG | 0.660689 | 4_2:-41935421 | Msa0600460:CDS |
| AAGGCACGAAGATACAAGGA+AGG | 0.664943 | 4_2:-41932863 | Msa0600460:CDS |
| GGATGATTGCTAACAGCATG+GGG | 0.673663 | 4_2:-41932933 | Msa0600460:CDS |
| CCAAAAGTCCAACCCCAAAG+CGG | 0.688632 | 4_2:-41935426 | Msa0600460:CDS |
| AAAATGTCTGAAGACACGAT+GGG | 0.717090 | 4_2:+41935481 | None:intergenic |
| CCTCTGCCACAGCAGCACAG+AGG | 0.728831 | 4_2:-41932954 | Msa0600460:CDS |
| GTTCTCGGGACCCTGTCACG+CGG | 0.733590 | 4_2:+41932890 | None:intergenic |
| GGGGACGAAGAAACTAATCG+TGG | 0.740827 | 4_2:-41935322 | Msa0600460:CDS |
| AAGTTGAAAGATGAAGCATG+GGG | 0.762760 | 4_2:-41932820 | Msa0600460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGAAAAATATATATTTCAAT+TGG | - | chr4_2:41933110-41933129 | Msa0600460:intron | 15.0% |
| !! | AAAATATATATTTCAATTGG+AGG | - | chr4_2:41933113-41933132 | Msa0600460:intron | 15.0% |
| !! | ACAGTAATCAAAATATTATT+GGG | + | chr4_2:41933470-41933489 | None:intergenic | 15.0% |
| !!! | AACACTTTTATTAAGAAAAT+AGG | - | chr4_2:41933828-41933847 | Msa0600460:intron | 15.0% |
| !! | GATATAATACTAAAAAACTA+TGG | + | chr4_2:41935028-41935047 | None:intergenic | 15.0% |
| !!! | ACATTAGTTATTTTAAATGT+GGG | - | chr4_2:41935048-41935067 | Msa0600460:intron | 15.0% |
| !! | TATTTGTTTATGTATTATGA+TGG | - | chr4_2:41935430-41935449 | Msa0600460:CDS | 15.0% |
| !! | TTCTTAATGATGATAAATAT+GGG | + | chr4_2:41935667-41935686 | None:intergenic | 15.0% |
| !!! | AAAGAAAAGAATGTGATTTT+TGG | - | chr4_2:41933191-41933210 | Msa0600460:intron | 20.0% |
| !! | CACAGTAATCAAAATATTAT+TGG | + | chr4_2:41933471-41933490 | None:intergenic | 20.0% |
| !! | GATTAAGAATCAATTCTAAA+TGG | + | chr4_2:41933512-41933531 | None:intergenic | 20.0% |
| !! | ATAAGTTAGTTACAATAGTA+AGG | - | chr4_2:41933555-41933574 | Msa0600460:intron | 20.0% |
| !! | AAAAACATAAATCATTTACG+CGG | + | chr4_2:41934651-41934670 | None:intergenic | 20.0% |
| !! | AAGATAAACTTTATAGTGAT+CGG | - | chr4_2:41934856-41934875 | Msa0600460:intron | 20.0% |
| !! | TGAAAAGATTAAACATAACA+AGG | + | chr4_2:41934973-41934992 | None:intergenic | 20.0% |
| !!! | CACATTAGTTATTTTAAATG+TGG | - | chr4_2:41935047-41935066 | Msa0600460:intron | 20.0% |
| !!! | TATATTTTGTTGAAAACACT+TGG | - | chr4_2:41935151-41935170 | Msa0600460:intron | 20.0% |
| !! | TCTTAATGATGATAAATATG+GGG | + | chr4_2:41935666-41935685 | None:intergenic | 20.0% |
| !! | GTTCTTAATGATGATAAATA+TGG | + | chr4_2:41935668-41935687 | None:intergenic | 20.0% |
| !! | TTTACCATTATATGTAGATT+AGG | - | chr4_2:41935770-41935789 | Msa0600460:intron | 20.0% |
| !! | ATTAGTCATTATCAGATTAA+TGG | + | chr4_2:41936098-41936117 | None:intergenic | 20.0% |
| !! | TGTTCATTTAATATGAGTAT+TGG | - | chr4_2:41936169-41936188 | Msa0600460:intron | 20.0% |
| !! | GTTCATTTAATATGAGTATT+GGG | - | chr4_2:41936170-41936189 | Msa0600460:intron | 20.0% |
| !! | TAATATAGCAGAAAGATAAA+GGG | + | chr4_2:41936251-41936270 | None:intergenic | 20.0% |
| !! | TTTATCTTTCTGCTATATTA+GGG | - | chr4_2:41936251-41936270 | Msa0600460:intron | 20.0% |
| !!! | TTTACTTAGATAATTTTGTG+TGG | - | chr4_2:41936761-41936780 | Msa0600460:intron | 20.0% |
| !!! | AGTTTTGAAATTCATCTTTA+AGG | - | chr4_2:41937055-41937074 | Msa0600460:intron | 20.0% |
| !! | ATAGAATCTATTGAATGTTA+TGG | + | chr4_2:41937497-41937516 | None:intergenic | 20.0% |
| !! | TAGTTAACGATATAATTCAA+GGG | - | chr4_2:41937542-41937561 | Msa0600460:five_prime_UTR | 20.0% |
| !! | GTGTAAAAGAATTTTCATGT+TGG | - | chr4_2:41933135-41933154 | Msa0600460:intron | 25.0% |
| !!! | GAATTTTCATGTTGGTTTTT+AGG | - | chr4_2:41933143-41933162 | Msa0600460:intron | 25.0% |
| !! | TTTAAGCAAAGTTGATTACA+CGG | - | chr4_2:41933357-41933376 | Msa0600460:intron | 25.0% |
| ! | AGATAAAGAAAAGAAAACAC+AGG | - | chr4_2:41933769-41933788 | Msa0600460:intron | 25.0% |
| ! | GATAAAGAAAAGAAAACACA+GGG | - | chr4_2:41933770-41933789 | Msa0600460:intron | 25.0% |
| ! | TCTTAATCAACACAAATTCT+TGG | + | chr4_2:41933806-41933825 | None:intergenic | 25.0% |
| !!! | AAGTTATTAGTTAATGGGTT+TGG | + | chr4_2:41933991-41934010 | None:intergenic | 25.0% |
| ! | TAGGGAAGTTATTAGTTAAT+GGG | + | chr4_2:41933996-41934015 | None:intergenic | 25.0% |
| ! | TTAGGGAAGTTATTAGTTAA+TGG | + | chr4_2:41933997-41934016 | None:intergenic | 25.0% |
| ! | TGTGATATTTGCAGTATTAT+TGG | - | chr4_2:41934084-41934103 | Msa0600460:CDS | 25.0% |
| !!! | TTATAGCCTCATTTTGATAT+TGG | - | chr4_2:41934584-41934603 | Msa0600460:intron | 25.0% |
| ! | ACAAATCCAATATCAAAATG+AGG | + | chr4_2:41934593-41934612 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTCTAGTTGTTCA+TGG | - | chr4_2:41934607-41934626 | Msa0600460:intron | 25.0% |
| ! | TATTGTGAAATATTGCAGAT+TGG | - | chr4_2:41934691-41934710 | Msa0600460:intron | 25.0% |
| ! | ATTGTGAAATATTGCAGATT+GGG | - | chr4_2:41934692-41934711 | Msa0600460:intron | 25.0% |
| !! | TGGAGTGTCAAAAATTAAAT+TGG | - | chr4_2:41934776-41934795 | Msa0600460:intron | 25.0% |
| ! | AGTGTCAAAAATTAAATTGG+AGG | - | chr4_2:41934779-41934798 | Msa0600460:intron | 25.0% |
| ! | AACATGAAAATTATGATCAG+GGG | + | chr4_2:41935103-41935122 | None:intergenic | 25.0% |
| ! | GAACATGAAAATTATGATCA+GGG | + | chr4_2:41935104-41935123 | None:intergenic | 25.0% |
| ! | TTTCATGTTCCAGTATAATT+AGG | - | chr4_2:41935114-41935133 | Msa0600460:intron | 25.0% |
| !!! | TTTTTCAACTCAGTACAATA+TGG | - | chr4_2:41935190-41935209 | Msa0600460:intron | 25.0% |
| !! | TTTTCAACTCAGTACAATAT+GGG | - | chr4_2:41935191-41935210 | Msa0600460:intron | 25.0% |
| !! | TCGAAAAGTATAAACTTTAG+AGG | + | chr4_2:41935473-41935492 | None:intergenic | 25.0% |
| ! | TGACAAACATGATATTATGA+TGG | - | chr4_2:41935495-41935514 | Msa0600460:CDS | 25.0% |
| ! | TCATCCTAATCTACATATAA+TGG | + | chr4_2:41935777-41935796 | None:intergenic | 25.0% |
| ! | TGCAATATATGCATATAGAA+TGG | + | chr4_2:41935967-41935986 | None:intergenic | 25.0% |
| ! | TCATCAACTTTATAATGAAC+CGG | - | chr4_2:41936070-41936089 | Msa0600460:intron | 25.0% |
| ! | GTGCTGCATTATAAAATTAA+TGG | + | chr4_2:41936126-41936145 | None:intergenic | 25.0% |
| ! | AATATAGCAGAAAGATAAAG+GGG | + | chr4_2:41936250-41936269 | None:intergenic | 25.0% |
| ! | CTAATATAGCAGAAAGATAA+AGG | + | chr4_2:41936252-41936271 | None:intergenic | 25.0% |
| ! | CTTTATCTTTCTGCTATATT+AGG | - | chr4_2:41936250-41936269 | Msa0600460:intron | 25.0% |
| ! | TTGCTCAAAATAAAGTTTCT+TGG | - | chr4_2:41936285-41936304 | Msa0600460:intron | 25.0% |
| ! | GTAGATAAAGAAAGAGAATT+GGG | + | chr4_2:41936442-41936461 | None:intergenic | 25.0% |
| ! | AGCAATAAAATCAAGTTTGA+GGG | + | chr4_2:41936926-41936945 | None:intergenic | 25.0% |
| ! | TAGCAATAAAATCAAGTTTG+AGG | + | chr4_2:41936927-41936946 | None:intergenic | 25.0% |
| !! | TCAAAAGTGCAATAAACAAT+GGG | + | chr4_2:41937162-41937181 | None:intergenic | 25.0% |
| !! | TTCAAAAGTGCAATAAACAA+TGG | + | chr4_2:41937163-41937182 | None:intergenic | 25.0% |
| ! | GTCTGAATAAATAATGAAAC+AGG | + | chr4_2:41937229-41937248 | None:intergenic | 25.0% |
| ! | AATGTTATGGATACAATGAA+TGG | + | chr4_2:41937484-41937503 | None:intergenic | 25.0% |
| ! | GTAGTTAACGATATAATTCA+AGG | - | chr4_2:41937541-41937560 | Msa0600460:five_prime_UTR | 25.0% |
| !!! | TTTTCATGTTGGTTTTTAGG+AGG | - | chr4_2:41933146-41933165 | Msa0600460:intron | 30.0% |
| !!! | TTTCATGTTGGTTTTTAGGA+GGG | - | chr4_2:41933147-41933166 | Msa0600460:intron | 30.0% |
| !! | ATTTTTGGATGATGTTTGCT+CGG | - | chr4_2:41933206-41933225 | Msa0600460:intron | 30.0% |
| TGAAAGTGATGTAAGAGATT+TGG | - | chr4_2:41933235-41933254 | Msa0600460:intron | 30.0% | |
| TTGATTACTGTGTATCTGAA+TGG | - | chr4_2:41933479-41933498 | Msa0600460:intron | 30.0% | |
| !! | TACAATAGTAAGGTCTTGTT+TGG | - | chr4_2:41933565-41933584 | Msa0600460:intron | 30.0% |
| !! | TTAGTTAATGGGTTTGGTAA+AGG | + | chr4_2:41933985-41934004 | None:intergenic | 30.0% |
| TGATAAGGAGGAGTTATTTA+GGG | + | chr4_2:41934014-41934033 | None:intergenic | 30.0% | |
| TTGATAAGGAGGAGTTATTT+AGG | + | chr4_2:41934015-41934034 | None:intergenic | 30.0% | |
| ! | GTTTGTTAGGATAGTTGATA+AGG | + | chr4_2:41934029-41934048 | None:intergenic | 30.0% |
| CAGTATTATTGGATATTGAG+AGG | - | chr4_2:41934095-41934114 | Msa0600460:intron | 30.0% | |
| !! | TGTTATAGTCTCATTTTGAC+AGG | - | chr4_2:41934132-41934151 | Msa0600460:intron | 30.0% |
| !! | GTTATAGTCTCATTTTGACA+GGG | - | chr4_2:41934133-41934152 | Msa0600460:intron | 30.0% |
| !! | TTATAGTCTCATTTTGACAG+GGG | - | chr4_2:41934134-41934153 | Msa0600460:intron | 30.0% |
| AAGAAAAGAAAAGACAGAAG+TGG | - | chr4_2:41934330-41934349 | Msa0600460:intron | 30.0% | |
| AGAAAAGAAAAGACAGAAGT+GGG | - | chr4_2:41934331-41934350 | Msa0600460:intron | 30.0% | |
| GACAAGATTGATATTCATGA+CGG | - | chr4_2:41934514-41934533 | Msa0600460:intron | 30.0% | |
| ACAAGATTGATATTCATGAC+GGG | - | chr4_2:41934515-41934534 | Msa0600460:intron | 30.0% | |
| TAGGATAATAGGATATTGAG+AGG | - | chr4_2:41934545-41934564 | Msa0600460:intron | 30.0% | |
| !!! | TTTTCTAGTTGTTCATGGAT+AGG | - | chr4_2:41934612-41934631 | Msa0600460:intron | 30.0% |
| !! | GTTCGATTATTGATGATGTT+GGG | - | chr4_2:41934889-41934908 | Msa0600460:CDS | 30.0% |
| !! | TTCGATTATTGATGATGTTG+GGG | - | chr4_2:41934890-41934909 | Msa0600460:CDS | 30.0% |
| GGAACATGAAAATTATGATC+AGG | + | chr4_2:41935105-41935124 | None:intergenic | 30.0% | |
| CTGACAAAACCTAATTATAC+TGG | + | chr4_2:41935126-41935145 | None:intergenic | 30.0% | |
| ! | ATTGTGATTTTGTGATTCGT+TGG | - | chr4_2:41935296-41935315 | Msa0600460:CDS | 30.0% |
| ! | TTGTGATTTTGTGATTCGTT+GGG | - | chr4_2:41935297-41935316 | Msa0600460:CDS | 30.0% |
| ! | ATTTTGTAATTACCTTCTGC+AGG | + | chr4_2:41935358-41935377 | None:intergenic | 30.0% |
| ! | TGTATTATGATGGTGAGTTA+TGG | - | chr4_2:41935440-41935459 | Msa0600460:CDS | 30.0% |
| ACACTCTACATATATTGCAA+AGG | + | chr4_2:41935700-41935719 | None:intergenic | 30.0% | |
| AATATATGTAGAGTGTGTCA+TGG | - | chr4_2:41935704-41935723 | Msa0600460:intron | 30.0% | |
| GTATGTTTGTCTAGATAAAG+TGG | + | chr4_2:41935854-41935873 | None:intergenic | 30.0% | |
| ATGCATATATTGCATCTTGT+TGG | - | chr4_2:41935973-41935992 | Msa0600460:intron | 30.0% | |
| ! | ATTTTATAATGCAGCACTAG+AGG | - | chr4_2:41936129-41936148 | Msa0600460:intron | 30.0% |
| CTCAGTTCAATTAAAGCAAA+TGG | - | chr4_2:41936217-41936236 | Msa0600460:intron | 30.0% | |
| TGCTATATTAGGGTGATATA+AGG | - | chr4_2:41936261-41936280 | Msa0600460:intron | 30.0% | |
| ACTTAGACTTCCTAAAGTAA+AGG | + | chr4_2:41936316-41936335 | None:intergenic | 30.0% | |
| ! | TACTTTAGGAAGTCTAAGTA+TGG | - | chr4_2:41936317-41936336 | Msa0600460:intron | 30.0% |
| GGTAGATAAAGAAAGAGAAT+TGG | + | chr4_2:41936443-41936462 | None:intergenic | 30.0% | |
| TAATAAATGTCACTCATACC+TGG | - | chr4_2:41936636-41936655 | Msa0600460:intron | 30.0% | |
| TCAGTGTATCAATATACCTA+TGG | - | chr4_2:41936690-41936709 | Msa0600460:intron | 30.0% | |
| CGACACTAAAATTTGCATAT+TGG | - | chr4_2:41936722-41936741 | Msa0600460:intron | 30.0% | |
| ! | TGTGTTTAGACTTGATAACA+TGG | - | chr4_2:41936858-41936877 | Msa0600460:intron | 30.0% |
| TGCAAAATATCATAGATCTC+AGG | + | chr4_2:41936981-41937000 | None:intergenic | 30.0% | |
| ! | AAATTCATCTTTAAGGAGCT+GGG | - | chr4_2:41937062-41937081 | Msa0600460:intron | 30.0% |
| TCAGTTTATGTTATCTCACA+TGG | - | chr4_2:41937199-41937218 | Msa0600460:intron | 30.0% | |
| AAAAGTTGAAAGATGAAGCA+TGG | - | chr4_2:41937409-41937428 | Msa0600460:CDS | 30.0% | |
| AAAGTTGAAAGATGAAGCAT+GGG | - | chr4_2:41937410-41937429 | Msa0600460:CDS | 30.0% | |
| AATAGATTCTATGCTTTGTC+TGG | - | chr4_2:41937505-41937524 | Msa0600460:exon | 30.0% | |
| TGTAACAGCAACTTCGTAAT+TGG | + | chr4_2:41932798-41932817 | None:intergenic | 35.0% | |
| TCAATAGAATCTTGTGAAGC+AGG | + | chr4_2:41932836-41932855 | None:intergenic | 35.0% | |
| AATTCTTCTTCTGCTGATGA+CGG | - | chr4_2:41932857-41932876 | Msa0600460:CDS | 35.0% | |
| TAATGTAGCAAACTTAGCGT+TGG | - | chr4_2:41932911-41932930 | Msa0600460:CDS | 35.0% | |
| CGATATACGAATATAAGACG+AGG | + | chr4_2:41932972-41932991 | None:intergenic | 35.0% | |
| CGTCTTATATTCGTATATCG+AGG | - | chr4_2:41932972-41932991 | Msa0600460:CDS | 35.0% | |
| GTATATCGAGGTGATATGTT+GGG | - | chr4_2:41932984-41933003 | Msa0600460:CDS | 35.0% | |
| !!! | AGTCTATACAGCGCTTTTTT+GGG | - | chr4_2:41933009-41933028 | Msa0600460:intron | 35.0% |
| !!! | CGCTTTTTTGGGCTTTAATT+GGG | - | chr4_2:41933020-41933039 | Msa0600460:intron | 35.0% |
| ! | TCTTTGTTTCTCGTTGCTAA+CGG | + | chr4_2:41933303-41933322 | None:intergenic | 35.0% |
| GAACGTGAAAACTGAAATGT+AGG | - | chr4_2:41933701-41933720 | Msa0600460:intron | 35.0% | |
| AACTGCTAGTTACTCCTATT+AGG | - | chr4_2:41933728-41933747 | Msa0600460:intron | 35.0% | |
| AACACACACAATCACCTAAT+AGG | + | chr4_2:41933745-41933764 | None:intergenic | 35.0% | |
| TGAAGTTACTGAGTTAGAGA+AGG | + | chr4_2:41933945-41933964 | None:intergenic | 35.0% | |
| !! | TGTTAGGATAGTTGATAAGG+AGG | + | chr4_2:41934026-41934045 | None:intergenic | 35.0% |
| ! | TTGACAGGGGATTTGTATTT+TGG | - | chr4_2:41934147-41934166 | Msa0600460:intron | 35.0% |
| !!! | AATGAGTCATGGTTGCTTTT+TGG | - | chr4_2:41934179-41934198 | Msa0600460:intron | 35.0% |
| !!! | ATGAGTCATGGTTGCTTTTT+GGG | - | chr4_2:41934180-41934199 | Msa0600460:intron | 35.0% |
| ! | TTTGGGTGATGTTTGAGATT+TGG | - | chr4_2:41934197-41934216 | Msa0600460:intron | 35.0% |
| ATGATGTGTGTGAAGTTACT+AGG | - | chr4_2:41934284-41934303 | Msa0600460:intron | 35.0% | |
| !! | TGGAAAGGATTTTGAAGAGT+GGG | - | chr4_2:41934468-41934487 | Msa0600460:intron | 35.0% |
| CATAAATCATTTACGCGGTT+AGG | + | chr4_2:41934646-41934665 | None:intergenic | 35.0% | |
| AAAATGTCTGAAGACACGAT+GGG | + | chr4_2:41934753-41934772 | None:intergenic | 35.0% | |
| TAAAATGTCTGAAGACACGA+TGG | + | chr4_2:41934754-41934773 | None:intergenic | 35.0% | |
| !! | GTGTCTTCAGACATTTTAAC+TGG | - | chr4_2:41934756-41934775 | Msa0600460:intron | 35.0% |
| TATAGTGATCGGTTACTTGA+TGG | - | chr4_2:41934867-41934886 | Msa0600460:intron | 35.0% | |
| !! | GGTTCGATTATTGATGATGT+TGG | - | chr4_2:41934888-41934907 | Msa0600460:intron | 35.0% |
| AGACAACAGAAGAACATGAT+TGG | + | chr4_2:41935218-41935237 | None:intergenic | 35.0% | |
| AGCGGAAGATCTATATAAAC+AGG | + | chr4_2:41935562-41935581 | None:intergenic | 35.0% | |
| TAGTGTAAACCAGTTTGAAG+CGG | - | chr4_2:41935626-41935645 | Msa0600460:intron | 35.0% | |
| TATATTGCAAAGGCAAGAGA+CGG | + | chr4_2:41935690-41935709 | None:intergenic | 35.0% | |
| CTAGATAAAGTGGTTGTCAT+GGG | + | chr4_2:41935844-41935863 | None:intergenic | 35.0% | |
| TCTAGATAAAGTGGTTGTCA+TGG | + | chr4_2:41935845-41935864 | None:intergenic | 35.0% | |
| CATTATCAGATTAATGGCAC+CGG | + | chr4_2:41936092-41936111 | None:intergenic | 35.0% | |
| CATCGTAAAGAGCTTAAACA+AGG | + | chr4_2:41936343-41936362 | None:intergenic | 35.0% | |
| TCTAGAAAGTCTCGAAATAC+AGG | + | chr4_2:41936889-41936908 | None:intergenic | 35.0% | |
| ! | GAAATTCATCTTTAAGGAGC+TGG | - | chr4_2:41937061-41937080 | Msa0600460:intron | 35.0% |
| ! | ATAAAAGGCACGAAGATACA+AGG | - | chr4_2:41937364-41937383 | Msa0600460:intron | 35.0% |
| AAGTTGAAAGATGAAGCATG+GGG | - | chr4_2:41937411-41937430 | Msa0600460:CDS | 35.0% | |
| !! | CAGAAGGAATGGATTTTCAC+CGG | + | chr4_2:41932705-41932724 | None:intergenic | 40.0% |
| AGATCGAAACCAATGGAGAA+AGG | - | chr4_2:41932725-41932744 | Msa0600460:three_prime_UTR | 40.0% | |
| GGACTCGTTATTCACAACTA+GGG | + | chr4_2:41932777-41932796 | None:intergenic | 40.0% | |
| TGGACTCGTTATTCACAACT+AGG | + | chr4_2:41932778-41932797 | None:intergenic | 40.0% | |
| AGAATCTTGTGAAGCAGGAT+TGG | + | chr4_2:41932831-41932850 | None:intergenic | 40.0% | |
| CGTATATCGAGGTGATATGT+TGG | - | chr4_2:41932983-41933002 | Msa0600460:CDS | 40.0% | |
| !!! | CAGTCTATACAGCGCTTTTT+TGG | - | chr4_2:41933008-41933027 | Msa0600460:intron | 40.0% |
| !!! | GCGCTTTTTTGGGCTTTAAT+TGG | - | chr4_2:41933019-41933038 | Msa0600460:intron | 40.0% |
| CTTTAATTGGGCCTTTCTAG+TGG | - | chr4_2:41933032-41933051 | Msa0600460:intron | 40.0% | |
| AGGACCAACTACTAATCCTA+GGG | + | chr4_2:41933072-41933091 | None:intergenic | 40.0% | |
| AAGGACCAACTACTAATCCT+AGG | + | chr4_2:41933073-41933092 | None:intergenic | 40.0% | |
| CGGTGTTTGAATGTGAGTTT+CGG | - | chr4_2:41933418-41933437 | Msa0600460:intron | 40.0% | |
| TTATTGGGCCTGTAAACGAA+GGG | + | chr4_2:41933455-41933474 | None:intergenic | 40.0% | |
| ATTATTGGGCCTGTAAACGA+AGG | + | chr4_2:41933456-41933475 | None:intergenic | 40.0% | |
| TAGCGACTCTATTGCAAAAG+GGG | + | chr4_2:41933888-41933907 | None:intergenic | 40.0% | |
| GTAGCGACTCTATTGCAAAA+GGG | + | chr4_2:41933889-41933908 | None:intergenic | 40.0% | |
| AGTAGCGACTCTATTGCAAA+AGG | + | chr4_2:41933890-41933909 | None:intergenic | 40.0% | |
| TTCCTCGTTTAGCAGGATAT+AGG | + | chr4_2:41934062-41934081 | None:intergenic | 40.0% | |
| GGTTATTCGTGAATGAGTCA+TGG | - | chr4_2:41934168-41934187 | Msa0600460:intron | 40.0% | |
| AAAGAAAAGACAGAAGTGGG+TGG | - | chr4_2:41934334-41934353 | Msa0600460:intron | 40.0% | |
| ! | ATATGGATGGCTTGTCACAA+AGG | - | chr4_2:41934416-41934435 | Msa0600460:intron | 40.0% |
| AGCAATCAAAGCAGAGATGA+GGG | - | chr4_2:41934442-41934461 | Msa0600460:intron | 40.0% | |
| !! | GTGGAAAGGATTTTGAAGAG+TGG | - | chr4_2:41934467-41934486 | Msa0600460:intron | 40.0% |
| ! | ATTCATGACGGGATAGTTGT+AGG | - | chr4_2:41934526-41934545 | Msa0600460:intron | 40.0% |
| CGGGATAGTTGTAGGATAAT+AGG | - | chr4_2:41934534-41934553 | Msa0600460:intron | 40.0% | |
| TTGTTCATGGATAGGCATGT+TGG | - | chr4_2:41934620-41934639 | Msa0600460:intron | 40.0% | |
| AAGTCTGTTGTTCTAGTGCT+TGG | + | chr4_2:41935250-41935269 | None:intergenic | 40.0% | |
| AAGCACTAGAACAACAGACT+TGG | - | chr4_2:41935249-41935268 | Msa0600460:intron | 40.0% | |
| TAGAACAACAGACTTGGAGA+AGG | - | chr4_2:41935255-41935274 | Msa0600460:intron | 40.0% | |
| ! | AGACTTGGAGAAGGTTTTTG+AGG | - | chr4_2:41935264-41935283 | Msa0600460:intron | 40.0% |
| AATTACCTTCTGCAGGAGTT+CGG | + | chr4_2:41935351-41935370 | None:intergenic | 40.0% | |
| TGTTCAAGAGAGAACTGAAG+CGG | + | chr4_2:41935580-41935599 | None:intergenic | 40.0% | |
| CTGGTTTACACTACATGCTT+TGG | + | chr4_2:41935619-41935638 | None:intergenic | 40.0% | |
| ! | AGTGTAAACCAGTTTGAAGC+GGG | - | chr4_2:41935627-41935646 | Msa0600460:intron | 40.0% |
| ! | GACATACTGTTACCCCTTTT+CGG | - | chr4_2:41935879-41935898 | Msa0600460:intron | 40.0% |
| ! | ACATACTGTTACCCCTTTTC+GGG | - | chr4_2:41935880-41935899 | Msa0600460:intron | 40.0% |
| CTTTCTTTATCTACCAGACG+CGG | - | chr4_2:41936448-41936467 | Msa0600460:intron | 40.0% | |
| !! | GTTGAACTCTGAAACTAGCA+GGG | + | chr4_2:41936522-41936541 | None:intergenic | 40.0% |
| !! | TGTTGAACTCTGAAACTAGC+AGG | + | chr4_2:41936523-41936542 | None:intergenic | 40.0% |
| GTGTGTCCACAACTTATCTA+CGG | - | chr4_2:41936576-41936595 | Msa0600460:intron | 40.0% | |
| TTTGTGTGGTCTCGTATCTA+TGG | - | chr4_2:41936775-41936794 | Msa0600460:intron | 40.0% | |
| !! | TTTTCGAGCACTATACAGTC+TGG | - | chr4_2:41936803-41936822 | Msa0600460:intron | 40.0% |
| AAGTTTGAGGGAACAAGCAA+GGG | + | chr4_2:41936914-41936933 | None:intergenic | 40.0% | |
| ! | CAATTCAACGAGAGTGTAGA+AGG | + | chr4_2:41937130-41937149 | None:intergenic | 40.0% |
| AGGATGATTGCTAACAGCAT+GGG | - | chr4_2:41937297-41937316 | Msa0600460:intron | 40.0% | |
| ! | TTCGTGCCTTTTATGTTCTC+GGG | + | chr4_2:41937358-41937377 | None:intergenic | 40.0% |
| ! | CTTCGTGCCTTTTATGTTCT+CGG | + | chr4_2:41937359-41937378 | None:intergenic | 40.0% |
| ! | GAAAGTGAGAGTGTGTTGAC+CGG | - | chr4_2:41932683-41932702 | Msa0600460:three_prime_UTR | 45.0% |
| GGTTTCGATCTCAGAAGGAA+TGG | + | chr4_2:41932716-41932735 | None:intergenic | 45.0% | |
| !! | CCATTGGTTTCGATCTCAGA+AGG | + | chr4_2:41932721-41932740 | None:intergenic | 45.0% |
| !! | CCTTCTGAGATCGAAACCAA+TGG | - | chr4_2:41932718-41932737 | Msa0600460:three_prime_UTR | 45.0% |
| CTGCGATTTCCTTTCTCCAT+TGG | + | chr4_2:41932737-41932756 | None:intergenic | 45.0% | |
| AGGAAATCGCAGTGAAGACT+TGG | - | chr4_2:41932745-41932764 | Msa0600460:three_prime_UTR | 45.0% | |
| ! | TCTTGTGAAGCAGGATTGGT+CGG | + | chr4_2:41932827-41932846 | None:intergenic | 45.0% |
| ! | AATTGGGCCTTTCTAGTGGA+CGG | - | chr4_2:41933036-41933055 | Msa0600460:intron | 45.0% |
| ! | TGGTCCCTAGGATTAGTAGT+TGG | - | chr4_2:41933065-41933084 | Msa0600460:intron | 45.0% |
| ! | GGATTAGTAGTTGGTCCTTG+AGG | - | chr4_2:41933074-41933093 | Msa0600460:intron | 45.0% |
| TTAGTAGTTGGTCCTTGAGG+TGG | - | chr4_2:41933077-41933096 | Msa0600460:intron | 45.0% | |
| TTTGGATGATGTTTGCTCGG+TGG | - | chr4_2:41933209-41933228 | Msa0600460:intron | 45.0% | |
| TTGGATGATGTTTGCTCGGT+GGG | - | chr4_2:41933210-41933229 | Msa0600460:intron | 45.0% | |
| ! | GCAAAGTTGATTACACGGTG+TGG | - | chr4_2:41933362-41933381 | Msa0600460:intron | 45.0% |
| ! | GAGATTCCGTGTTTGAAACC+GGG | + | chr4_2:41933397-41933416 | None:intergenic | 45.0% |
| ! | CGAGATTCCGTGTTTGAAAC+CGG | + | chr4_2:41933398-41933417 | None:intergenic | 45.0% |
| GTTTCAAACACGGAATCTCG+CGG | - | chr4_2:41933398-41933417 | Msa0600460:intron | 45.0% | |
| TATTGGGCCTGTAAACGAAG+GGG | + | chr4_2:41933454-41933473 | None:intergenic | 45.0% | |
| TGAGAGAAAACTCTCCTCCA+AGG | - | chr4_2:41933858-41933877 | Msa0600460:intron | 45.0% | |
| ATTGCAAAAGGGGCAATCCT+TGG | + | chr4_2:41933878-41933897 | None:intergenic | 45.0% | |
| ! | AGGCTAACGAGGAGTTTGTT+AGG | + | chr4_2:41934042-41934061 | None:intergenic | 45.0% |
| TAGCAGGATATAGGCTAACG+AGG | + | chr4_2:41934053-41934072 | None:intergenic | 45.0% | |
| AGCCTATATCCTGCTAAACG+AGG | - | chr4_2:41934057-41934076 | Msa0600460:CDS | 45.0% | |
| TCACACTTTCCTCGTTTAGC+AGG | + | chr4_2:41934069-41934088 | None:intergenic | 45.0% | |
| AAACAGCCATCTACTTCTCC+CGG | + | chr4_2:41934373-41934392 | None:intergenic | 45.0% | |
| CCATCCATATATGCACGTTC+TGG | + | chr4_2:41934406-41934425 | None:intergenic | 45.0% | |
| CCAGAACGTGCATATATGGA+TGG | - | chr4_2:41934403-41934422 | Msa0600460:intron | 45.0% | |
| GAGCAATCAAAGCAGAGATG+AGG | - | chr4_2:41934441-41934460 | Msa0600460:intron | 45.0% | |
| ! | GTGTAAACCAGTTTGAAGCG+GGG | - | chr4_2:41935628-41935647 | Msa0600460:intron | 45.0% |
| ACTTTAACCCCGCTTCAAAC+TGG | + | chr4_2:41935638-41935657 | None:intergenic | 45.0% | |
| GTGTGTCATGGTAGCTGATT+TGG | - | chr4_2:41935716-41935735 | Msa0600460:intron | 45.0% | |
| !! | CTTGGTGCTGCCTTTACTTT+AGG | - | chr4_2:41936303-41936322 | Msa0600460:intron | 45.0% |
| AAAAAGAAACATGCCGCGTC+TGG | + | chr4_2:41936464-41936483 | None:intergenic | 45.0% | |
| ACACACTGCCAATACATCGT+CGG | + | chr4_2:41936562-41936581 | None:intergenic | 45.0% | |
| ACCTGGTCGATAGATGTTGA+TGG | - | chr4_2:41936653-41936672 | Msa0600460:intron | 45.0% | |
| CAAGTTTGAGGGAACAAGCA+AGG | + | chr4_2:41936915-41936934 | None:intergenic | 45.0% | |
| ! | GGGTATTTTGCGTACTGAAC+AGG | - | chr4_2:41937082-41937101 | Msa0600460:intron | 45.0% |
| !!! | GTTTTTGGTCTTTGCTGAGG+TGG | + | chr4_2:41937258-41937277 | None:intergenic | 45.0% |
| !!! | GAGGTTTTTGGTCTTTGCTG+AGG | + | chr4_2:41937261-41937280 | None:intergenic | 45.0% |
| GAGGATGATTGCTAACAGCA+TGG | - | chr4_2:41937296-41937315 | Msa0600460:intron | 45.0% | |
| GGATGATTGCTAACAGCATG+GGG | - | chr4_2:41937298-41937317 | Msa0600460:intron | 45.0% | |
| AAGGCACGAAGATACAAGGA+AGG | - | chr4_2:41937368-41937387 | Msa0600460:intron | 45.0% | |
| CTGGTGTAGGCTTGAGACTT+GGG | - | chr4_2:41932938-41932957 | Msa0600460:CDS | 50.0% | |
| AATCCCACCGTCCACTAGAA+AGG | + | chr4_2:41933046-41933065 | None:intergenic | 50.0% | |
| ! | TTTCTAGTGGACGGTGGGAT+TGG | - | chr4_2:41933045-41933064 | Msa0600460:intron | 50.0% |
| CGAAACTCGTATCCACCTCA+AGG | + | chr4_2:41933092-41933111 | None:intergenic | 50.0% | |
| CCTTCACCCGGTTTCAAACA+CGG | - | chr4_2:41933388-41933407 | Msa0600460:intron | 50.0% | |
| GTGTTTGCCCCTTCGTTTAC+AGG | - | chr4_2:41933444-41933463 | Msa0600460:intron | 50.0% | |
| ACAGAAGTGGGTGGATCTGA+AGG | - | chr4_2:41934343-41934362 | Msa0600460:intron | 50.0% | |
| GGGTGGATCTGAAGGAAAAC+CGG | - | chr4_2:41934351-41934370 | Msa0600460:intron | 50.0% | |
| GGTGGATCTGAAGGAAAACC+GGG | - | chr4_2:41934352-41934371 | Msa0600460:intron | 50.0% | |
| GGAAAACCGGGAGAAGTAGA+TGG | - | chr4_2:41934364-41934383 | Msa0600460:intron | 50.0% | |
| GCAGCCAGAACGTGCATATA+TGG | - | chr4_2:41934399-41934418 | Msa0600460:intron | 50.0% | |
| CAAAGCAGAGATGAGGGTAG+TGG | - | chr4_2:41934448-41934467 | Msa0600460:intron | 50.0% | |
| !! | CAGAGATGAGGGTAGTGGAA+AGG | - | chr4_2:41934453-41934472 | Msa0600460:intron | 50.0% |
| AAGAGTGGGCACTAGATGCT+GGG | - | chr4_2:41934482-41934501 | Msa0600460:intron | 50.0% | |
| ! | ACGATGGGCACTAACTTGTC+AGG | + | chr4_2:41934738-41934757 | None:intergenic | 50.0% |
| CCAAAAGTCCAACCCCAAAG+CGG | - | chr4_2:41934805-41934824 | Msa0600460:intron | 50.0% | |
| GGGGACGAAGAAACTAATCG+TGG | - | chr4_2:41934909-41934928 | Msa0600460:CDS | 50.0% | |
| GTATTCCGAACTCCTGCAGA+AGG | - | chr4_2:41935343-41935362 | Msa0600460:CDS | 50.0% | |
| !! | TGTTACCCCTTTTCGGGAAG+TGG | - | chr4_2:41935886-41935905 | Msa0600460:intron | 50.0% |
| !! | GTTACCCCTTTTCGGGAAGT+GGG | - | chr4_2:41935887-41935906 | Msa0600460:intron | 50.0% |
| TCCAACCCACTTCCCGAAAA+GGG | + | chr4_2:41935895-41935914 | None:intergenic | 50.0% | |
| ATCCAACCCACTTCCCGAAA+AGG | + | chr4_2:41935896-41935915 | None:intergenic | 50.0% | |
| GACACGCCGTAGATAAGTTG+TGG | + | chr4_2:41936585-41936604 | None:intergenic | 50.0% | |
| GCCATCAACATCTATCGACC+AGG | + | chr4_2:41936657-41936676 | None:intergenic | 50.0% | |
| AGTGTCGTATCGTCGTCCAT+AGG | + | chr4_2:41936709-41936728 | None:intergenic | 50.0% | |
| GTCTTTGCTGAGGTGGTTTC+AGG | + | chr4_2:41937251-41937270 | None:intergenic | 50.0% | |
| ! | AATCATCCTCTGTGCTGCTG+TGG | + | chr4_2:41937286-41937305 | None:intergenic | 50.0% |
| CAGGGTCCCGAGAACATAAA+AGG | - | chr4_2:41937349-41937368 | Msa0600460:intron | 50.0% | |
| !! | GAAGCAGGATTGGTCGGTGA+TGG | + | chr4_2:41932821-41932840 | None:intergenic | 55.0% |
| !! | CAAACTTAGCGTTGGCGTGC+TGG | - | chr4_2:41932919-41932938 | Msa0600460:CDS | 55.0% |
| GCTGGTGTAGGCTTGAGACT+TGG | - | chr4_2:41932937-41932956 | Msa0600460:CDS | 55.0% | |
| ! | CCGTGTTTGAAACCGGGTGA+AGG | + | chr4_2:41933391-41933410 | None:intergenic | 55.0% |
| GCAAAAGGGGCAATCCTTGG+AGG | + | chr4_2:41933875-41933894 | None:intergenic | 55.0% | |
| GAAGAGTGGGCACTAGATGC+TGG | - | chr4_2:41934481-41934500 | Msa0600460:intron | 55.0% | |
| !!! | CCGCTTTGGGGTTGGACTTT+TGG | + | chr4_2:41934808-41934827 | None:intergenic | 55.0% |
| CCAACCCACTTCCCGAAAAG+GGG | + | chr4_2:41935894-41935913 | None:intergenic | 55.0% | |
| !! | GCAGAGTGCCGACGATGTAT+TGG | - | chr4_2:41936551-41936570 | Msa0600460:intron | 55.0% |
| ACTTATCTACGGCGTGTCGC+AGG | - | chr4_2:41936587-41936606 | Msa0600460:intron | 55.0% | |
| ! | GCTGCTGTGGCAGAGGTTTT+TGG | + | chr4_2:41937273-41937292 | None:intergenic | 55.0% |
| !! | TAGCGTTGGCGTGCTGGTGT+AGG | - | chr4_2:41932925-41932944 | Msa0600460:CDS | 60.0% |
| ! | TGGGCCTTTCTAGTGGACGG+TGG | - | chr4_2:41933039-41933058 | Msa0600460:intron | 60.0% |
| ! | GGGCCTTTCTAGTGGACGGT+GGG | - | chr4_2:41933040-41933059 | Msa0600460:intron | 60.0% |
| ACGGTGTGGACACCTTCACC+CGG | - | chr4_2:41933376-41933395 | Msa0600460:intron | 60.0% | |
| AACCCCAAAGCGGCGTGGAA+GGG | - | chr4_2:41934815-41934834 | Msa0600460:intron | 60.0% | |
| ! | TTCCCCTTCCACGCCGCTTT+GGG | + | chr4_2:41934821-41934840 | None:intergenic | 60.0% |
| !! | CCCCTTTTCGGGAAGTGGGT+TGG | - | chr4_2:41935891-41935910 | Msa0600460:intron | 60.0% |
| ACATCGTCGGCACTCTGCAG+AGG | + | chr4_2:41936549-41936568 | None:intergenic | 60.0% | |
| !! | GGACGGTGGGATTGGTCCCT+AGG | - | chr4_2:41933053-41933072 | Msa0600460:intron | 65.0% |
| AGTCCAACCCCAAAGCGGCG+TGG | - | chr4_2:41934810-41934829 | Msa0600460:intron | 65.0% | |
| !! | CTTCCACGCCGCTTTGGGGT+TGG | + | chr4_2:41934816-41934835 | None:intergenic | 65.0% |
| CAACCCCAAAGCGGCGTGGA+AGG | - | chr4_2:41934814-41934833 | Msa0600460:intron | 65.0% | |
| ACCCCAAAGCGGCGTGGAAG+GGG | - | chr4_2:41934816-41934835 | Msa0600460:intron | 65.0% | |
| ! | TCCCCTTCCACGCCGCTTTG+GGG | + | chr4_2:41934820-41934839 | None:intergenic | 65.0% |
| GTTCCCCTTCCACGCCGCTT+TGG | + | chr4_2:41934822-41934841 | None:intergenic | 65.0% | |
| TCGTCGGCACTCTGCAGAGG+CGG | + | chr4_2:41936546-41936565 | None:intergenic | 65.0% | |
| ACGGCGTGTCGCAGGCGTAT+TGG | - | chr4_2:41936595-41936614 | Msa0600460:intron | 65.0% | |
| ! | CCTCTGTGCTGCTGTGGCAG+AGG | + | chr4_2:41937280-41937299 | None:intergenic | 65.0% |
| CCTCTGCCACAGCAGCACAG+AGG | - | chr4_2:41937277-41937296 | Msa0600460:intron | 65.0% | |
| GTTCTCGGGACCCTGTCACG+CGG | + | chr4_2:41937344-41937363 | None:intergenic | 65.0% | |
| ! | CCTGTCACGCGGCTCGGGGA+GGG | + | chr4_2:41937333-41937352 | None:intergenic | 75.0% |
| CCTCCCCGAGCCGCGTGACA+GGG | - | chr4_2:41937331-41937350 | Msa0600460:intron | 75.0% | |
| GGACCCTGTCACGCGGCTCG+GGG | + | chr4_2:41937337-41937356 | None:intergenic | 75.0% | |
| GGGACCCTGTCACGCGGCTC+GGG | + | chr4_2:41937338-41937357 | None:intergenic | 75.0% | |
| CGGGACCCTGTCACGCGGCT+CGG | + | chr4_2:41937339-41937358 | None:intergenic | 75.0% | |
| ! | CCCTCCCCGAGCCGCGTGAC+AGG | - | chr4_2:41937330-41937349 | Msa0600460:intron | 80.0% |
| !! | CCCTGTCACGCGGCTCGGGG+AGG | + | chr4_2:41937334-41937353 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 41932672 | 41937581 | 41932672 | ID=Msa0600460;Name=Msa0600460 |
| chr4_2 | mRNA | 41932672 | 41937581 | 41932672 | ID=Msa0600460-mRNA-1;Parent=Msa0600460;Name=Msa0600460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=65|1|1|1|1|1|5|138|282 |
| chr4_2 | exon | 41932672 | 41933006 | 41932672 | ID=Msa0600460-mRNA-1:exon:9127;Parent=Msa0600460-mRNA-1 |
| chr4_2 | exon | 41934015 | 41934110 | 41934015 | ID=Msa0600460-mRNA-1:exon:9126;Parent=Msa0600460-mRNA-1 |
| chr4_2 | exon | 41934889 | 41935050 | 41934889 | ID=Msa0600460-mRNA-1:exon:9125;Parent=Msa0600460-mRNA-1 |
| chr4_2 | exon | 41935293 | 41935544 | 41935293 | ID=Msa0600460-mRNA-1:exon:9124;Parent=Msa0600460-mRNA-1 |
| chr4_2 | exon | 41937375 | 41937581 | 41937375 | ID=Msa0600460-mRNA-1:exon:9123;Parent=Msa0600460-mRNA-1 |
| chr4_2 | five_prime_UTR | 41937517 | 41937581 | 41937517 | ID=Msa0600460-mRNA-1:five_prime_utr;Parent=Msa0600460-mRNA-1 |
| chr4_2 | CDS | 41937375 | 41937516 | 41937375 | ID=Msa0600460-mRNA-1:cds;Parent=Msa0600460-mRNA-1 |
| chr4_2 | CDS | 41935293 | 41935544 | 41935293 | ID=Msa0600460-mRNA-1:cds;Parent=Msa0600460-mRNA-1 |
| chr4_2 | CDS | 41934889 | 41935050 | 41934889 | ID=Msa0600460-mRNA-1:cds;Parent=Msa0600460-mRNA-1 |
| chr4_2 | CDS | 41934015 | 41934110 | 41934015 | ID=Msa0600460-mRNA-1:cds;Parent=Msa0600460-mRNA-1 |
| chr4_2 | CDS | 41932810 | 41933006 | 41932810 | ID=Msa0600460-mRNA-1:cds;Parent=Msa0600460-mRNA-1 |
| chr4_2 | three_prime_UTR | 41932672 | 41932809 | 41932672 | ID=Msa0600460-mRNA-1:three_prime_utr;Parent=Msa0600460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
