Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362090 | XP_013450398.1 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362090 | sp|Q8GX84|C3H1_ARATH | 69.375 | 320 | 95 | 2 | 8 | 327 | 20 | 336 | 3.39e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362090 | A0A072U502 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 661 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1362090 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa1362090 | 0.818069 | 2.375888e-52 | -8.615850e-47 |
| Msa0010490 | Msa1362090 | 0.815349 | 9.676891e-52 | -8.615850e-47 |
| Msa0010500 | Msa1362090 | 0.810000 | 1.432762e-50 | -8.615850e-47 |
| Msa0019390 | Msa1362090 | 0.802755 | 4.825620e-49 | -8.615850e-47 |
| Msa0029260 | Msa1362090 | 0.850054 | 2.175620e-60 | -8.615850e-47 |
| Msa0036370 | Msa1362090 | 0.802146 | 6.444167e-49 | -8.615850e-47 |
| Msa0043660 | Msa1362090 | 0.812136 | 4.933513e-51 | -8.615850e-47 |
| Msa0047160 | Msa1362090 | 0.809087 | 2.250362e-50 | -8.615850e-47 |
| Msa0059950 | Msa1362090 | 0.809150 | 2.180809e-50 | -8.615850e-47 |
| Msa0075500 | Msa1362090 | 0.801026 | 1.093087e-48 | -8.615850e-47 |
| Msa0076780 | Msa1362090 | 0.838809 | 2.306778e-57 | -8.615850e-47 |
| Msa0093960 | Msa1362090 | 0.813666 | 2.280587e-51 | -8.615850e-47 |
| Msa1351540 | Msa1362090 | 0.841549 | 4.441675e-58 | -8.615850e-47 |
| Msa1355700 | Msa1362090 | 0.802948 | 4.403006e-49 | -8.615850e-47 |
| Msa1359970 | Msa1362090 | 0.821191 | 4.603302e-53 | -8.615850e-47 |
| Msa1362090 | Msa1364210 | 0.809267 | 2.059356e-50 | -8.615850e-47 |
| Msa1362090 | Msa1365860 | 0.800823 | 1.202747e-48 | -8.615850e-47 |
| Msa1362090 | Msa1366650 | 0.805724 | 1.162757e-49 | -8.615850e-47 |
| Msa1362090 | Msa1419870 | 0.819506 | 1.120811e-52 | -8.615850e-47 |
| Msa1362090 | Msa1436520 | 0.845218 | 4.658473e-59 | -8.615850e-47 |
| Msa1362090 | Msa1458210 | 0.947239 | 9.900386e-106 | -8.615850e-47 |
| Msa1362090 | Msa1458810 | 0.812134 | 4.938528e-51 | -8.615850e-47 |
| Msa1362090 | Msa1465960 | 0.800832 | 1.197947e-48 | -8.615850e-47 |
| Msa0605000 | Msa1362090 | 0.847638 | 1.018595e-59 | -8.615850e-47 |
| Msa0609000 | Msa1362090 | 0.847774 | 9.344609e-60 | -8.615850e-47 |
| Msa0618930 | Msa1362090 | 0.851890 | 6.608576e-61 | -8.615850e-47 |
| Msa0619210 | Msa1362090 | 0.808301 | 3.311857e-50 | -8.615850e-47 |
| Msa0626940 | Msa1362090 | 0.818189 | 2.232361e-52 | -8.615850e-47 |
| Msa0631350 | Msa1362090 | 0.822503 | 2.287531e-53 | -8.615850e-47 |
| Msa0643320 | Msa1362090 | 0.808328 | 3.268530e-50 | -8.615850e-47 |
| Msa0669720 | Msa1362090 | 0.827322 | 1.667778e-54 | -8.615850e-47 |
| Msa0669760 | Msa1362090 | 0.820748 | 5.822381e-53 | -8.615850e-47 |
| Msa0683140 | Msa1362090 | 0.824888 | 6.324454e-54 | -8.615850e-47 |
| Msa0683600 | Msa1362090 | 0.808302 | 3.311247e-50 | -8.615850e-47 |
| Msa0685140 | Msa1362090 | 0.830716 | 2.510807e-55 | -8.615850e-47 |
| Msa0689440 | Msa1362090 | 0.806142 | 9.496704e-50 | -8.615850e-47 |
| Msa0702370 | Msa1362090 | 0.801005 | 1.104405e-48 | -8.615850e-47 |
| Msa0715650 | Msa1362090 | 0.823894 | 1.083491e-53 | -8.615850e-47 |
| Msa0719420 | Msa1362090 | 0.850423 | 1.714547e-60 | -8.615850e-47 |
| Msa0719610 | Msa1362090 | 0.853342 | 2.545269e-61 | -8.615850e-47 |
| Msa0743990 | Msa1362090 | 0.827315 | 1.674723e-54 | -8.615850e-47 |
| Msa0748170 | Msa1362090 | 0.811548 | 6.627697e-51 | -8.615850e-47 |
| Msa0763330 | Msa1362090 | 0.846945 | 1.578948e-59 | -8.615850e-47 |
| Msa0772480 | Msa1362090 | 0.863452 | 2.463755e-64 | -8.615850e-47 |
| Msa0789680 | Msa1362090 | 0.850963 | 1.208284e-60 | -8.615850e-47 |
| Msa0793390 | Msa1362090 | 0.815439 | 9.241142e-52 | -8.615850e-47 |
| Msa0795820 | Msa1362090 | 0.823814 | 1.131020e-53 | -8.615850e-47 |
| Msa0798440 | Msa1362090 | 0.864667 | 1.030729e-64 | -8.615850e-47 |
| Msa0800370 | Msa1362090 | 0.817330 | 3.488157e-52 | -8.615850e-47 |
| Msa0802410 | Msa1362090 | 0.841769 | 3.886328e-58 | -8.615850e-47 |
| Msa0830540 | Msa1362090 | 0.841563 | 4.405198e-58 | -8.615850e-47 |
| Msa0839200 | Msa1362090 | 0.800125 | 1.669263e-48 | -8.615850e-47 |
| Msa0126840 | Msa1362090 | 0.827626 | 1.410334e-54 | -8.615850e-47 |
| Msa0127040 | Msa1362090 | 0.822258 | 2.608254e-53 | -8.615850e-47 |
| Msa0137550 | Msa1362090 | 0.802928 | 4.444824e-49 | -8.615850e-47 |
| Msa0138160 | Msa1362090 | 0.801421 | 9.074634e-49 | -8.615850e-47 |
| Msa0146770 | Msa1362090 | 0.832982 | 6.926205e-56 | -8.615850e-47 |
| Msa0165950 | Msa1362090 | 0.801672 | 8.061148e-49 | -8.615850e-47 |
| Msa0169300 | Msa1362090 | 0.848903 | 4.555388e-60 | -8.615850e-47 |
| Msa0189300 | Msa1362090 | 0.818315 | 2.089888e-52 | -8.615850e-47 |
| Msa0231660 | Msa1362090 | 0.830814 | 2.375250e-55 | -8.615850e-47 |
| Msa1224810 | Msa1362090 | 0.803318 | 3.691058e-49 | -8.615850e-47 |
| Msa1250790 | Msa1362090 | 0.818429 | 1.969809e-52 | -8.615850e-47 |
| Msa1259400 | Msa1362090 | 0.807156 | 5.801099e-50 | -8.615850e-47 |
| Msa1259530 | Msa1362090 | 0.802554 | 5.310396e-49 | -8.615850e-47 |
| Msa1264210 | Msa1362090 | 0.808484 | 3.027174e-50 | -8.615850e-47 |
| Msa1265630 | Msa1362090 | 0.808039 | 3.766516e-50 | -8.615850e-47 |
| Msa1270620 | Msa1362090 | 0.812338 | 4.457302e-51 | -8.615850e-47 |
| Msa1270690 | Msa1362090 | 0.809627 | 1.723529e-50 | -8.615850e-47 |
| Msa1274560 | Msa1362090 | 0.803594 | 3.235816e-49 | -8.615850e-47 |
| Msa1302380 | Msa1362090 | 0.804268 | 2.343923e-49 | -8.615850e-47 |
| Msa1316360 | Msa1362090 | 0.812155 | 4.888801e-51 | -8.615850e-47 |
| Msa1331710 | Msa1362090 | 0.814461 | 1.522680e-51 | -8.615850e-47 |
| Msa1332590 | Msa1362090 | 0.804170 | 2.456922e-49 | -8.615850e-47 |
| Msa1336560 | Msa1362090 | 0.815491 | 8.997730e-52 | -8.615850e-47 |
| Msa0378940 | Msa1362090 | 0.815163 | 1.063991e-51 | -8.615850e-47 |
| Msa0385490 | Msa1362090 | 0.827711 | 1.345093e-54 | -8.615850e-47 |
| Msa0387910 | Msa1362090 | 0.859668 | 3.528402e-63 | -8.615850e-47 |
| Msa0388700 | Msa1362090 | 0.800810 | 1.209960e-48 | -8.615850e-47 |
| Msa0419520 | Msa1362090 | 0.824457 | 7.989354e-54 | -8.615850e-47 |
| Msa0421260 | Msa1362090 | 0.847826 | 9.043532e-60 | -8.615850e-47 |
| Msa0450930 | Msa1362090 | 0.809370 | 1.956958e-50 | -8.615850e-47 |
| Msa0451120 | Msa1362090 | 0.805135 | 1.544798e-49 | -8.615850e-47 |
| Msa0458640 | Msa1362090 | 0.806199 | 9.239321e-50 | -8.615850e-47 |
| Msa0465550 | Msa1362090 | 0.817895 | 2.600762e-52 | -8.615850e-47 |
| Msa0467220 | Msa1362090 | 0.845516 | 3.867620e-59 | -8.615850e-47 |
| Msa0481030 | Msa1362090 | 0.812051 | 5.148988e-51 | -8.615850e-47 |
| Msa0482130 | Msa1362090 | 0.819730 | 9.959429e-53 | -8.615850e-47 |
| Msa0987370 | Msa1362090 | 0.805618 | 1.223768e-49 | -8.615850e-47 |
| Msa1001350 | Msa1362090 | 0.805694 | 1.179487e-49 | -8.615850e-47 |
| Msa1029970 | Msa1362090 | 0.830453 | 2.911746e-55 | -8.615850e-47 |
| Msa1071320 | Msa1362090 | 0.800717 | 1.264057e-48 | -8.615850e-47 |
| Msa1072710 | Msa1362090 | 0.815105 | 1.095983e-51 | -8.615850e-47 |
| Msa1082250 | Msa1362090 | 0.826860 | 2.151472e-54 | -8.615850e-47 |
| Msa1088290 | Msa1362090 | 0.846307 | 2.357822e-59 | -8.615850e-47 |
| Msa1089320 | Msa1362090 | 0.809022 | 2.323168e-50 | -8.615850e-47 |
| Msa0296920 | Msa1362090 | 0.813495 | 2.487305e-51 | -8.615850e-47 |
| Msa0358860 | Msa1362090 | 0.800612 | 1.328452e-48 | -8.615850e-47 |
| Msa1108820 | Msa1362090 | 0.806612 | 7.560192e-50 | -8.615850e-47 |
| Msa1120810 | Msa1362090 | 0.824788 | 6.675610e-54 | -8.615850e-47 |
| Msa1126850 | Msa1362090 | 0.852537 | 4.326569e-61 | -8.615850e-47 |
| Msa1126920 | Msa1362090 | 0.829011 | 6.532684e-55 | -8.615850e-47 |
| Msa1133230 | Msa1362090 | 0.806137 | 9.519922e-50 | -8.615850e-47 |
| Msa1133250 | Msa1362090 | 0.813535 | 2.437059e-51 | -8.615850e-47 |
| Msa1138520 | Msa1362090 | 0.801954 | 7.055116e-49 | -8.615850e-47 |
| Msa1138870 | Msa1362090 | 0.803454 | 3.459004e-49 | -8.615850e-47 |
| Msa1165780 | Msa1362090 | 0.818915 | 1.527471e-52 | -8.615850e-47 |
| Msa1165960 | Msa1362090 | 0.841866 | 3.663737e-58 | -8.615850e-47 |
| Msa1179980 | Msa1362090 | 0.808549 | 2.932730e-50 | -8.615850e-47 |
| Msa1197320 | Msa1362090 | 0.818689 | 1.719159e-52 | -8.615850e-47 |
| Msa1209260 | Msa1362090 | 0.832061 | 1.171629e-55 | -8.615850e-47 |
| Msa1209760 | Msa1362090 | 0.810666 | 1.029125e-50 | -8.615850e-47 |
| Msa1214120 | Msa1362090 | 0.806349 | 8.590369e-50 | -8.615850e-47 |
| Msa1218500 | Msa1362090 | 0.844305 | 8.210292e-59 | -8.615850e-47 |
| Msa0489410 | Msa1362090 | 0.839744 | 1.319267e-57 | -8.615850e-47 |
| Msa0500470 | Msa1362090 | 0.805323 | 1.410905e-49 | -8.615850e-47 |
| Msa0502090 | Msa1362090 | 0.832661 | 8.322860e-56 | -8.615850e-47 |
| Msa0511490 | Msa1362090 | 0.819326 | 1.231721e-52 | -8.615850e-47 |
| Msa0527910 | Msa1362090 | 0.803012 | 4.270480e-49 | -8.615850e-47 |
| Msa0534900 | Msa1362090 | 0.823277 | 1.510333e-53 | -8.615850e-47 |
| Msa0542090 | Msa1362090 | 0.817576 | 3.068990e-52 | -8.615850e-47 |
| Msa0542130 | Msa1362090 | 0.819025 | 1.442320e-52 | -8.615850e-47 |
| Msa0550540 | Msa1362090 | 0.817118 | 3.892125e-52 | -8.615850e-47 |
| Msa0550570 | Msa1362090 | 0.822412 | 2.401433e-53 | -8.615850e-47 |
| Msa0554290 | Msa1362090 | 0.819798 | 9.613444e-53 | -8.615850e-47 |
| Msa0566100 | Msa1362090 | 0.802104 | 6.572270e-49 | -8.615850e-47 |
| Msa0581130 | Msa1362090 | 0.837554 | 4.852994e-57 | -8.615850e-47 |
| Msa0581280 | Msa1362090 | 0.819149 | 1.351523e-52 | -8.615850e-47 |
| Msa0600460 | Msa1362090 | 0.802090 | 6.615068e-49 | -8.615850e-47 |
| Msa0602370 | Msa1362090 | 0.807394 | 5.164971e-50 | -8.615850e-47 |
| Msa0861570 | Msa1362090 | 0.800027 | 1.747079e-48 | -8.615850e-47 |
| Msa0864290 | Msa1362090 | 0.826223 | 3.052764e-54 | -8.615850e-47 |
| Msa0867120 | Msa1362090 | 0.937736 | 2.131140e-98 | -8.615850e-47 |
| Msa0880730 | Msa1362090 | 0.835428 | 1.687771e-56 | -8.615850e-47 |
| Msa0887250 | Msa1362090 | 0.842471 | 2.533572e-58 | -8.615850e-47 |
| Msa0901450 | Msa1362090 | 0.814969 | 1.174900e-51 | -8.615850e-47 |
| Msa0913240 | Msa1362090 | 0.867100 | 1.755587e-65 | -8.615850e-47 |
| Msa0925770 | Msa1362090 | 0.843288 | 1.536565e-58 | -8.615850e-47 |
| Msa0933290 | Msa1362090 | 0.803750 | 3.003981e-49 | -8.615850e-47 |
| Msa0945440 | Msa1362090 | 0.824778 | 6.712227e-54 | -8.615850e-47 |
| Msa0964060 | Msa1362090 | 0.806992 | 6.284125e-50 | -8.615850e-47 |
| Msa0966010 | Msa1362090 | 0.804078 | 2.567576e-49 | -8.615850e-47 |
| Msa0970530 | Msa1362090 | 0.805953 | 1.040688e-49 | -8.615850e-47 |
| Msa0970600 | Msa1362090 | 0.816841 | 4.491741e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362090 | MtrunA17_Chr7g0269781 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362090 | AT1G01350.1 | 69.375 | 320 | 95 | 2 | 8 | 327 | 20 | 336 | 3.44e-163 | 459 |
| Msa1362090 | AT5G06420.1 | 68.125 | 320 | 96 | 2 | 8 | 327 | 58 | 371 | 3.29e-161 | 455 |
| Msa1362090 | AT5G06420.2 | 68.125 | 320 | 96 | 2 | 8 | 327 | 58 | 371 | 3.29e-161 | 455 |
| Msa1362090 | AT4G01023.1 | 64.407 | 59 | 21 | 0 | 258 | 316 | 76 | 134 | 2.58e-26 | 104 |
| Msa1362090 | AT4G01023.3 | 65.079 | 63 | 21 | 1 | 254 | 316 | 92 | 153 | 5.98e-26 | 104 |
| Msa1362090 | AT4G01023.2 | 64.407 | 59 | 21 | 0 | 258 | 316 | 95 | 153 | 8.42e-26 | 103 |
Find 84 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACTACAAGATATATTT+TGG | 0.081156 | tig0017690:+219131 | None:intergenic |
| CAATGACTATGTTTGCTTCT+TGG | 0.240264 | tig0017690:-219284 | Msa1362090:three_prime_UTR |
| CTCATATTCTTCCTATTAAC+AGG | 0.250339 | tig0017690:+220342 | None:intergenic |
| TTGAGTTGAAAACATATCTT+AGG | 0.269766 | tig0017690:-219201 | Msa1362090:three_prime_UTR |
| TCTTCAGAAAACCTGTTAAT+AGG | 0.277151 | tig0017690:-220353 | Msa1362090:CDS |
| TTGTAATCCTTGCATATATC+TGG | 0.290645 | tig0017690:+219835 | None:intergenic |
| GTGGGTCACACGGTCCTCTC+AGG | 0.313412 | tig0017690:-219900 | Msa1362090:CDS |
| GATCGAGGTGATTACAAATC+TGG | 0.331028 | tig0017690:-219766 | Msa1362090:CDS |
| CATTGTCTCATTGATCGTAT+TGG | 0.384962 | tig0017690:+219302 | None:intergenic |
| TGCAAGGATTACAAGGAAAC+TGG | 0.409524 | tig0017690:-219826 | Msa1362090:CDS |
| AAATGAAAGCTGGGTTTCTC+AGG | 0.415855 | tig0017690:+220165 | None:intergenic |
| CATTTGTCGAAACCCATTTG+TGG | 0.418726 | tig0017690:-219605 | Msa1362090:CDS |
| CTTGCTTAAGAGCTCTTTCA+CGG | 0.431115 | tig0017690:+220049 | None:intergenic |
| CTGTGAGCATTGTGCATTGA+AGG | 0.436410 | tig0017690:-219551 | Msa1362090:intron |
| TAGCAAAGCAACAGCAACTT+TGG | 0.436558 | tig0017690:-220109 | Msa1362090:CDS |
| GTTGAGACAGGATCCACAAA+TGG | 0.441292 | tig0017690:+219592 | None:intergenic |
| CTGTCTTGCTTAGAGAAGAA+TGG | 0.441799 | tig0017690:+222423 | None:intergenic |
| AGAAGACTCGAAATGAAAGC+TGG | 0.441893 | tig0017690:+220155 | None:intergenic |
| AAGAGGAAGAAAGTTGCAAA+GGG | 0.442815 | tig0017690:+222489 | None:intergenic |
| ACACGGTCCTCTCAGGGCTT+CGG | 0.450938 | tig0017690:-219893 | Msa1362090:CDS |
| TGCTTACACTTGGTTGAGAC+AGG | 0.460245 | tig0017690:+219580 | None:intergenic |
| TGACTATGTTTGCTTCTTGG+AGG | 0.467406 | tig0017690:-219281 | Msa1362090:three_prime_UTR |
| CAATAATTATACAGATCATA+AGG | 0.469416 | tig0017690:-219965 | Msa1362090:CDS |
| GGTGGCAGATGGAGAAAGAA+TGG | 0.469953 | tig0017690:-219744 | Msa1362090:CDS |
| TGCAGGTGAGGATGCGGAAG+AGG | 0.471533 | tig0017690:-219686 | Msa1362090:CDS |
| TGTTTGAAATAGTATGTTTG+TGG | 0.479928 | tig0017690:-219098 | Msa1362090:three_prime_UTR |
| TTGAAATCTAGAATAGAAGA+AGG | 0.484019 | tig0017690:+222397 | None:intergenic |
| CGAGGATGTAAAATTATACA+AGG | 0.486690 | tig0017690:-219992 | Msa1362090:CDS |
| ACATACCTTGTTCAGTCGGC+TGG | 0.489348 | tig0017690:+220490 | None:intergenic |
| GCAAACAATTGCCAGTGAAA+AGG | 0.499122 | tig0017690:-219926 | Msa1362090:CDS |
| CGACAAATGAAACACGCAAA+TGG | 0.499537 | tig0017690:+219619 | None:intergenic |
| AAAGAGGAAGAAAGTTGCAA+AGG | 0.506039 | tig0017690:+222488 | None:intergenic |
| GAAAGCAAGGAAGATGAGAT+TGG | 0.507679 | tig0017690:-219710 | Msa1362090:CDS |
| TGCAGAGCTCTTCGAAGAGC+CGG | 0.511210 | tig0017690:+220209 | None:intergenic |
| AATTATACAGATCATAAGGC+TGG | 0.520545 | tig0017690:-219961 | Msa1362090:CDS |
| ATCGAGGTGATTACAAATCT+GGG | 0.520829 | tig0017690:-219765 | Msa1362090:CDS |
| GAGCTCTTTCACGGATGGCA+CGG | 0.524231 | tig0017690:+220058 | None:intergenic |
| TTGAGACAGGATCCACAAAT+GGG | 0.525917 | tig0017690:+219593 | None:intergenic |
| AGATATATGCAAGGATTACA+AGG | 0.530308 | tig0017690:-219833 | Msa1362090:CDS |
| TGGGTCACACGGTCCTCTCA+GGG | 0.532282 | tig0017690:-219899 | Msa1362090:CDS |
| CTTAAGAGCTCTTTCACGGA+TGG | 0.538525 | tig0017690:+220053 | None:intergenic |
| AGTCTCAAGGGAAAGAGTAC+TGG | 0.538575 | tig0017690:-220018 | Msa1362090:CDS |
| GAAAACCAGCCGACTGAACA+AGG | 0.548242 | tig0017690:-220495 | Msa1362090:intron |
| TTGGAAGAGCAAAGAAGAAG+AGG | 0.552231 | tig0017690:+222449 | None:intergenic |
| GTGGCAGATGGAGAAAGAAT+GGG | 0.553122 | tig0017690:-219743 | Msa1362090:CDS |
| TTACAAATCTGGGTGGCAGA+TGG | 0.553483 | tig0017690:-219755 | Msa1362090:CDS |
| GAAGACTCGAAATGAAAGCT+GGG | 0.554193 | tig0017690:+220156 | None:intergenic |
| AGCTCTTTCACGGATGGCAC+GGG | 0.560125 | tig0017690:+220059 | None:intergenic |
| GAAACTGGTTACTGTGGGTA+TGG | 0.560524 | tig0017690:-219811 | Msa1362090:CDS |
| TATTGAGAATGAAGATAATG+AGG | 0.560776 | tig0017690:-220310 | Msa1362090:CDS |
| TCATGAGATACGAAAGAAGA+TGG | 0.563924 | tig0017690:-219345 | Msa1362090:CDS |
| CATATCTTAGGTTTCCGCAC+AGG | 0.564144 | tig0017690:-219189 | Msa1362090:three_prime_UTR |
| ATAGGAAGAATATGAGGAAG+CGG | 0.564756 | tig0017690:-220335 | Msa1362090:CDS |
| GGTGAGGATGCGGAAGAGGA+AGG | 0.573050 | tig0017690:-219682 | Msa1362090:CDS |
| AAATGACAGAACAAAAGAGA+GGG | 0.580612 | tig0017690:+219251 | None:intergenic |
| CTGTTAATAGGAAGAATATG+AGG | 0.583376 | tig0017690:-220341 | Msa1362090:CDS |
| GGGATGAAGCTGAGAAAGCA+AGG | 0.584805 | tig0017690:-219723 | Msa1362090:CDS |
| TCCCAAAATATATCTTGTAG+TGG | 0.585918 | tig0017690:-219133 | Msa1362090:three_prime_UTR |
| TACAAGGAAACTGGTTACTG+TGG | 0.587264 | tig0017690:-219817 | Msa1362090:CDS |
| ACAATTGCCAGTGAAAAGGC+TGG | 0.588175 | tig0017690:-219922 | Msa1362090:CDS |
| TTATACATACCTTGTTCAGT+CGG | 0.588673 | tig0017690:+220486 | None:intergenic |
| AAGAAAATTCGAAGCAAGCA+AGG | 0.590196 | tig0017690:-222375 | Msa1362090:intron |
| GATGAGATTGGCTGCAGGTG+AGG | 0.590274 | tig0017690:-219698 | Msa1362090:CDS |
| GAAAAGGCTGGTGGGTCACA+CGG | 0.600903 | tig0017690:-219910 | Msa1362090:CDS |
| AGGAAGATGAGATTGGCTGC+AGG | 0.603143 | tig0017690:-219703 | Msa1362090:CDS |
| ATTGGCTGCAGGTGAGGATG+CGG | 0.603342 | tig0017690:-219692 | Msa1362090:CDS |
| ATTGCCAGTGAAAAGGCTGG+TGG | 0.607353 | tig0017690:-219919 | Msa1362090:CDS |
| TGAAATCTAGAATAGAAGAA+GGG | 0.613287 | tig0017690:+222398 | None:intergenic |
| AAAATGACAGAACAAAAGAG+AGG | 0.617311 | tig0017690:+219250 | None:intergenic |
| GATACGAAAGAAGATGGCTG+AGG | 0.623889 | tig0017690:-219339 | Msa1362090:CDS |
| TTGCCAGTGAAAAGGCTGGT+GGG | 0.630138 | tig0017690:-219918 | Msa1362090:CDS |
| CAAGCGACTGAGAGTCTCAA+GGG | 0.630489 | tig0017690:-220030 | Msa1362090:CDS |
| ACAGAAGTAGTGCTTACACT+TGG | 0.630927 | tig0017690:+219570 | None:intergenic |
| GCAAGCGACTGAGAGTCTCA+AGG | 0.636269 | tig0017690:-220031 | Msa1362090:CDS |
| GGGAAAGAGTACTGGTTCCG+AGG | 0.640397 | tig0017690:-220010 | Msa1362090:CDS |
| ACAAGGAAACTGGTTACTGT+GGG | 0.647981 | tig0017690:-219816 | Msa1362090:CDS |
| TGTAAGTTTATGCATGATCG+AGG | 0.650874 | tig0017690:-219781 | Msa1362090:CDS |
| TTATCAGCCAGATATATGCA+AGG | 0.656472 | tig0017690:-219842 | Msa1362090:CDS |
| AATGACAGAACAAAAGAGAG+GGG | 0.684921 | tig0017690:+219252 | None:intergenic |
| AGAGCTCTTCGAAGAGCCGG+TGG | 0.686462 | tig0017690:+220212 | None:intergenic |
| GAGGATGTAAAATTATACAA+GGG | 0.688297 | tig0017690:-219991 | Msa1362090:CDS |
| ATGTGAGCCGAAGCCCTGAG+AGG | 0.689295 | tig0017690:+219886 | None:intergenic |
| CAAAATTGACAAGACCTGTG+CGG | 0.715778 | tig0017690:+219175 | None:intergenic |
| GAGGTGATTACAAATCTGGG+TGG | 0.758440 | tig0017690:-219762 | Msa1362090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCTTTTTATATGATTTT+TGG | - | tig0017690:220584-220603 | Msa1362090:intron | 10.0% |
| !! | ATAGTATAAATAATAATGTA+GGG | + | tig0017690:220964-220983 | None:intergenic | 10.0% |
| !! | TATAGTATAAATAATAATGT+AGG | + | tig0017690:220965-220984 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTTTTTGTGTTT+GGG | - | tig0017690:219542-219561 | Msa1362090:intron | 15.0% |
| !!! | AAAATAGAAGACTTATTTTA+AGG | - | tig0017690:219589-219608 | Msa1362090:CDS | 15.0% |
| !! | TATTATGATAAGTAATAACA+TGG | + | tig0017690:219643-219662 | None:intergenic | 15.0% |
| !!! | AAATATATTGATGACATTTA+GGG | + | tig0017690:220818-220837 | None:intergenic | 15.0% |
| !!! | GTTCTTTTTTTTTTTGTGTT+TGG | - | tig0017690:219541-219560 | Msa1362090:intron | 20.0% |
| !!! | TCTTTTTTTTTTTGTGTTTG+GGG | - | tig0017690:219543-219562 | Msa1362090:intron | 20.0% |
| !!! | TCTTCTATTTTGCTAAAATA+TGG | + | tig0017690:219580-219599 | None:intergenic | 20.0% |
| !! | ATAATAGTAGACTTATTTGA+TGG | - | tig0017690:219657-219676 | Msa1362090:CDS | 20.0% |
| !! | ACAAATTTCTCATTCATATA+TGG | - | tig0017690:219718-219737 | Msa1362090:CDS | 20.0% |
| !!! | GATCAAAAGTATCATTAATA+TGG | + | tig0017690:220285-220304 | None:intergenic | 20.0% |
| !! | TGCATTATAAATCTATTTGA+TGG | - | tig0017690:220768-220787 | Msa1362090:intron | 20.0% |
| !!! | GAAATATATTGATGACATTT+AGG | + | tig0017690:220819-220838 | None:intergenic | 20.0% |
| !!! | AGACTCAAATTGAATTATTT+TGG | + | tig0017690:220904-220923 | None:intergenic | 20.0% |
| !!! | TATAGTGTTATTTCTCATAT+TGG | - | tig0017690:220981-221000 | Msa1362090:intron | 20.0% |
| !! | TAGAAAAAAAAGGTTAATGA+TGG | + | tig0017690:221164-221183 | None:intergenic | 20.0% |
| !! | CAATAATTATACAGATCATA+AGG | - | tig0017690:221600-221619 | Msa1362090:intron | 20.0% |
| !! | TGAAATCTAGAATAGAAGAA+GGG | + | tig0017690:219170-219189 | None:intergenic | 25.0% |
| !! | TTGAAATCTAGAATAGAAGA+AGG | + | tig0017690:219171-219190 | None:intergenic | 25.0% |
| !!! | TCTTATGTTTTTGTTGTTCT+GGG | - | tig0017690:219236-219255 | Msa1362090:three_prime_UTR | 25.0% |
| ! | CGAAATCTAAAAACGAATTA+GGG | + | tig0017690:219264-219283 | None:intergenic | 25.0% |
| ! | TCGAAATCTAAAAACGAATT+AGG | + | tig0017690:219265-219284 | None:intergenic | 25.0% |
| ! | GAAATTAAAACGCAGAAATA+TGG | + | tig0017690:219349-219368 | None:intergenic | 25.0% |
| ! | TCTATAAGATGATGATTTCT+GGG | - | tig0017690:219377-219396 | Msa1362090:CDS | 25.0% |
| !!! | AGACTTATTTTAAGGTTTCT+AGG | - | tig0017690:219597-219616 | Msa1362090:CDS | 25.0% |
| !!! | GATTTTTGAAAGTAGATAAG+AGG | + | tig0017690:219751-219770 | None:intergenic | 25.0% |
| ! | GGATTTAATAATACATATCC+TGG | - | tig0017690:219857-219876 | Msa1362090:CDS | 25.0% |
| ! | AATAATACATATCCTGGATA+AGG | - | tig0017690:219863-219882 | Msa1362090:CDS | 25.0% |
| !! | TGATCTGGTTTAACAATTAT+AGG | - | tig0017690:220026-220045 | Msa1362090:CDS | 25.0% |
| ! | TTAACAATTATAGGACATGT+TGG | - | tig0017690:220035-220054 | Msa1362090:CDS | 25.0% |
| ! | TACTGTCATACTATCAAAAT+GGG | + | tig0017690:220315-220334 | None:intergenic | 25.0% |
| ! | TTACTGTCATACTATCAAAA+TGG | + | tig0017690:220316-220335 | None:intergenic | 25.0% |
| !! | TTTGATAGTATGACAGTAAT+TGG | - | tig0017690:220317-220336 | Msa1362090:CDS | 25.0% |
| !! | TTGATAGTATGACAGTAATT+GGG | - | tig0017690:220318-220337 | Msa1362090:CDS | 25.0% |
| !!! | GATAGACCATTTTTTGTTTA+AGG | - | tig0017690:220534-220553 | Msa1362090:exon | 25.0% |
| ! | CATGAAGAGAAAAATTTACT+CGG | + | tig0017690:220871-220890 | None:intergenic | 25.0% |
| ! | TTCAATTTGAGTCTGAATTT+CGG | - | tig0017690:220910-220929 | Msa1362090:intron | 25.0% |
| !! | TCTCATATTGGTAATTGATT+TGG | - | tig0017690:220993-221012 | Msa1362090:intron | 25.0% |
| !! | TTTTACTATGGAAAATTCTG+AGG | - | tig0017690:221036-221055 | Msa1362090:intron | 25.0% |
| ! | TATTGAGAATGAAGATAATG+AGG | - | tig0017690:221255-221274 | Msa1362090:intron | 25.0% |
| !! | AATAAGTTATTCTTTTCCAC+CGG | - | tig0017690:221337-221356 | Msa1362090:intron | 25.0% |
| !! | CTTGTATAATTTTACATCCT+CGG | + | tig0017690:221575-221594 | None:intergenic | 25.0% |
| ! | GAGGATGTAAAATTATACAA+GGG | - | tig0017690:221574-221593 | Msa1362090:intron | 25.0% |
| !!! | CTTATTTGCTTTGAAGTTAA+GGG | + | tig0017690:222044-222063 | None:intergenic | 25.0% |
| !!! | ACTTATTTGCTTTGAAGTTA+AGG | + | tig0017690:222045-222064 | None:intergenic | 25.0% |
| ! | AGAAGTTAGGCATAATTAAA+AGG | + | tig0017690:222118-222137 | None:intergenic | 25.0% |
| !!! | TGTCATTTTTAACTGTCAAA+TGG | - | tig0017690:222329-222348 | Msa1362090:intron | 25.0% |
| !!! | TTGAGTTGAAAACATATCTT+AGG | - | tig0017690:222364-222383 | Msa1362090:intron | 25.0% |
| !! | TCCACTACAAGATATATTTT+GGG | + | tig0017690:222436-222455 | None:intergenic | 25.0% |
| !! | TTCCACTACAAGATATATTT+TGG | + | tig0017690:222437-222456 | None:intergenic | 25.0% |
| !! | TGTTTGAAATAGTATGTTTG+TGG | - | tig0017690:222467-222486 | Msa1362090:five_prime_UTR | 25.0% |
| !!! | CTCTTATGTTTTTGTTGTTC+TGG | - | tig0017690:219235-219254 | Msa1362090:three_prime_UTR | 30.0% |
| CTCTATAAGATGATGATTTC+TGG | - | tig0017690:219376-219395 | Msa1362090:CDS | 30.0% | |
| AAATCGAAACATCCTATGTT+CGG | + | tig0017690:219414-219433 | None:intergenic | 30.0% | |
| ! | TATTTCGATTTGTTTCGATC+AGG | - | tig0017690:219445-219464 | Msa1362090:intron | 30.0% |
| ! | TTGTTGCTGTTCTTATCTAT+AGG | - | tig0017690:219486-219505 | Msa1362090:intron | 30.0% |
| CAAATAGGATGGCTATTATT+TGG | + | tig0017690:219685-219704 | None:intergenic | 30.0% | |
| CAAATAATAGCCATCCTATT+TGG | - | tig0017690:219683-219702 | Msa1362090:CDS | 30.0% | |
| CAAAGTCTTCTTAAATACCA+TGG | - | tig0017690:219781-219800 | Msa1362090:CDS | 30.0% | |
| ! | TTTTCCACTATGTATTTAGC+AGG | - | tig0017690:219836-219855 | Msa1362090:CDS | 30.0% |
| AAATCCTGCTAAATACATAG+TGG | + | tig0017690:219843-219862 | None:intergenic | 30.0% | |
| TTTGGTTATCTATGATGATC+TGG | - | tig0017690:220011-220030 | Msa1362090:CDS | 30.0% | |
| ! | AACATCCCTTGCATTAATTT+TGG | - | tig0017690:220086-220105 | Msa1362090:CDS | 30.0% |
| CTCAACCAAAATTAATGCAA+GGG | + | tig0017690:220094-220113 | None:intergenic | 30.0% | |
| !!! | CTTGCATTAATTTTGGTTGA+GGG | - | tig0017690:220093-220112 | Msa1362090:CDS | 30.0% |
| CTAGCTTATATCACCTAAAA+TGG | + | tig0017690:220121-220140 | None:intergenic | 30.0% | |
| ! | TAATGATACTTTTGATCACC+TGG | - | tig0017690:220288-220307 | Msa1362090:CDS | 30.0% |
| ACTGTCATACTATCAAAATG+GGG | + | tig0017690:220314-220333 | None:intergenic | 30.0% | |
| TTGTATCACAAAAATCGAAC+TGG | - | tig0017690:220416-220435 | Msa1362090:intron | 30.0% | |
| GGCATATAATTCTTCCATAT+TGG | - | tig0017690:220437-220456 | Msa1362090:intron | 30.0% | |
| !! | GTGTTTCTACCATTATTTTG+TGG | - | tig0017690:220494-220513 | Msa1362090:intron | 30.0% |
| AAAATGGTCTATCCATTGAA+AGG | + | tig0017690:220527-220546 | None:intergenic | 30.0% | |
| CAGAGACCTTAAACAAAAAA+TGG | + | tig0017690:220543-220562 | None:intergenic | 30.0% | |
| CAAACATTAAGTACAAGTTC+AGG | + | tig0017690:220745-220764 | None:intergenic | 30.0% | |
| TCAATTTGAGTCTGAATTTC+GGG | - | tig0017690:220911-220930 | Msa1362090:intron | 30.0% | |
| !! | TGAATTTCGGGTTTAGTTAT+TGG | - | tig0017690:220923-220942 | Msa1362090:intron | 30.0% |
| TTATACATACCTTGTTCAGT+CGG | + | tig0017690:221082-221101 | None:intergenic | 30.0% | |
| GATGGTACAAAAAAATGTAG+AGG | + | tig0017690:221146-221165 | None:intergenic | 30.0% | |
| AACAAACGCGTAGAAAAAAA+AGG | + | tig0017690:221174-221193 | None:intergenic | 30.0% | |
| TCTTCAGAAAACCTGTTAAT+AGG | - | tig0017690:221212-221231 | Msa1362090:intron | 30.0% | |
| CTCATATTCTTCCTATTAAC+AGG | + | tig0017690:221226-221245 | None:intergenic | 30.0% | |
| CTGTTAATAGGAAGAATATG+AGG | - | tig0017690:221224-221243 | Msa1362090:intron | 30.0% | |
| TGTTCAGAAAAAGAACATGA+AGG | - | tig0017690:221309-221328 | Msa1362090:intron | 30.0% | |
| CGAGGATGTAAAATTATACA+AGG | - | tig0017690:221573-221592 | Msa1362090:intron | 30.0% | |
| AATTATACAGATCATAAGGC+TGG | - | tig0017690:221604-221623 | Msa1362090:intron | 30.0% | |
| TTGTAATCCTTGCATATATC+TGG | + | tig0017690:221733-221752 | None:intergenic | 30.0% | |
| AGATATATGCAAGGATTACA+AGG | - | tig0017690:221732-221751 | Msa1362090:intron | 30.0% | |
| AAGTAAAATGAGCAGAAGTT+AGG | + | tig0017690:222131-222150 | None:intergenic | 30.0% | |
| AAATGACAGAACAAAAGAGA+GGG | + | tig0017690:222317-222336 | None:intergenic | 30.0% | |
| AAAATGACAGAACAAAAGAG+AGG | + | tig0017690:222318-222337 | None:intergenic | 30.0% | |
| TCCCAAAATATATCTTGTAG+TGG | - | tig0017690:222432-222451 | Msa1362090:five_prime_UTR | 30.0% | |
| AAGAGGAAGAAAGTTGCAAA+GGG | + | tig0017690:219079-219098 | None:intergenic | 35.0% | |
| AAAGAGGAAGAAAGTTGCAA+AGG | + | tig0017690:219080-219099 | None:intergenic | 35.0% | |
| ! | GCTTAGAGAAGAATGGTTTT+TGG | + | tig0017690:219138-219157 | None:intergenic | 35.0% |
| AAGAAAATTCGAAGCAAGCA+AGG | - | tig0017690:219190-219209 | Msa1362090:three_prime_UTR | 35.0% | |
| AACAAACCCAGAAATCGAAT+TGG | + | tig0017690:219471-219490 | None:intergenic | 35.0% | |
| CTTCTTAAATACCATGGAAG+TGG | - | tig0017690:219787-219806 | Msa1362090:CDS | 35.0% | |
| !! | TCTTGTTATTACCACTTCCA+TGG | + | tig0017690:219801-219820 | None:intergenic | 35.0% |
| GTCAATTCCACTAGAAATTG+AGG | - | tig0017690:219897-219916 | Msa1362090:CDS | 35.0% | |
| TGAGCATAATTCTCAAGACA+CGG | - | tig0017690:219980-219999 | Msa1362090:CDS | 35.0% | |
| CCTCAACCAAAATTAATGCA+AGG | + | tig0017690:220095-220114 | None:intergenic | 35.0% | |
| !!! | CCTTGCATTAATTTTGGTTG+AGG | - | tig0017690:220092-220111 | Msa1362090:CDS | 35.0% |
| TGATATAAGCTAGCTAGCAA+TGG | - | tig0017690:220128-220147 | Msa1362090:CDS | 35.0% | |
| GGCTCAATCTAGACTAATAA+AGG | + | tig0017690:220159-220178 | None:intergenic | 35.0% | |
| AAGTTCCATAGAACCAAAGT+CGG | + | tig0017690:220468-220487 | None:intergenic | 35.0% | |
| ! | ATCGTGACAGCTTTTTACTA+TGG | - | tig0017690:221024-221043 | Msa1362090:intron | 35.0% |
| ATAGGAAGAATATGAGGAAG+CGG | - | tig0017690:221230-221249 | Msa1362090:intron | 35.0% | |
| TTATCAGCCAGATATATGCA+AGG | - | tig0017690:221723-221742 | Msa1362090:intron | 35.0% | |
| TGTAAGTTTATGCATGATCG+AGG | - | tig0017690:221784-221803 | Msa1362090:intron | 35.0% | |
| ATCGAGGTGATTACAAATCT+GGG | - | tig0017690:221800-221819 | Msa1362090:intron | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | tig0017690:222197-222216 | None:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | tig0017690:222196-222215 | Msa1362090:intron | 35.0% |
| TCATGAGATACGAAAGAAGA+TGG | - | tig0017690:222220-222239 | Msa1362090:intron | 35.0% | |
| CATTGTCTCATTGATCGTAT+TGG | + | tig0017690:222266-222285 | None:intergenic | 35.0% | |
| CAATGACTATGTTTGCTTCT+TGG | - | tig0017690:222281-222300 | Msa1362090:intron | 35.0% | |
| AATGACAGAACAAAAGAGAG+GGG | + | tig0017690:222316-222335 | None:intergenic | 35.0% | |
| !!! | CGTTTTCTGGGTTTTGAAAG+AGG | + | tig0017690:219096-219115 | None:intergenic | 40.0% |
| !!! | AAGAAGAAGAGGCGTTTTCT+GGG | + | tig0017690:219108-219127 | None:intergenic | 40.0% |
| !!! | AAAGAAGAAGAGGCGTTTTC+TGG | + | tig0017690:219109-219128 | None:intergenic | 40.0% |
| TTGGAAGAGCAAAGAAGAAG+AGG | + | tig0017690:219119-219138 | None:intergenic | 40.0% | |
| CTGTCTTGCTTAGAGAAGAA+TGG | + | tig0017690:219145-219164 | None:intergenic | 40.0% | |
| !! | ACTGTGTTTGTTGCGTTTTC+TGG | - | tig0017690:219295-219314 | Msa1362090:three_prime_UTR | 40.0% |
| ATCAGGCCAATTCGATTTCT+GGG | - | tig0017690:219462-219481 | Msa1362090:intron | 40.0% | |
| !!! | TTTTTTGTGTTTGGGGATGC+TGG | - | tig0017690:219550-219569 | Msa1362090:intron | 40.0% |
| ACAGAGATGTCCAAATAGGA+TGG | + | tig0017690:219696-219715 | None:intergenic | 40.0% | |
| GTTCACAGAGATGTCCAAAT+AGG | + | tig0017690:219700-219719 | None:intergenic | 40.0% | |
| CAAGACACGGTTGTTAACTT+TGG | - | tig0017690:219993-220012 | Msa1362090:CDS | 40.0% | |
| ! | TTGGTTGAGGGAACCATTTT+AGG | - | tig0017690:220105-220124 | Msa1362090:CDS | 40.0% |
| TGTTAGAGCAATGGAACTCA+AGG | + | tig0017690:220180-220199 | None:intergenic | 40.0% | |
| TTCCATTGCTCTAACATTGC+AGG | - | tig0017690:220184-220203 | Msa1362090:CDS | 40.0% | |
| TCCATTGCTCTAACATTGCA+GGG | - | tig0017690:220185-220204 | Msa1362090:CDS | 40.0% | |
| TGTGTTGTCTTGCTACAGTT+AGG | - | tig0017690:220639-220658 | Msa1362090:intron | 40.0% | |
| CGGTGACATGACAAAGAATA+TGG | + | tig0017690:220851-220870 | None:intergenic | 40.0% | |
| AAATGAAAGCTGGGTTTCTC+AGG | + | tig0017690:221403-221422 | None:intergenic | 40.0% | |
| GAAGACTCGAAATGAAAGCT+GGG | + | tig0017690:221412-221431 | None:intergenic | 40.0% | |
| AGAAGACTCGAAATGAAAGC+TGG | + | tig0017690:221413-221432 | None:intergenic | 40.0% | |
| TAGCAAAGCAACAGCAACTT+TGG | - | tig0017690:221456-221475 | Msa1362090:intron | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | tig0017690:221519-221538 | None:intergenic | 40.0% | |
| GCAAACAATTGCCAGTGAAA+AGG | - | tig0017690:221639-221658 | Msa1362090:intron | 40.0% | |
| TGCAAGGATTACAAGGAAAC+TGG | - | tig0017690:221739-221758 | Msa1362090:intron | 40.0% | |
| TACAAGGAAACTGGTTACTG+TGG | - | tig0017690:221748-221767 | Msa1362090:intron | 40.0% | |
| ACAAGGAAACTGGTTACTGT+GGG | - | tig0017690:221749-221768 | Msa1362090:intron | 40.0% | |
| GATCGAGGTGATTACAAATC+TGG | - | tig0017690:221799-221818 | Msa1362090:intron | 40.0% | |
| GAAAGCAAGGAAGATGAGAT+TGG | - | tig0017690:221855-221874 | Msa1362090:intron | 40.0% | |
| CGACAAATGAAACACGCAAA+TGG | + | tig0017690:221949-221968 | None:intergenic | 40.0% | |
| CATTTGTCGAAACCCATTTG+TGG | - | tig0017690:221960-221979 | Msa1362090:intron | 40.0% | |
| TTGAGACAGGATCCACAAAT+GGG | + | tig0017690:221975-221994 | None:intergenic | 40.0% | |
| ACAGAAGTAGTGCTTACACT+TGG | + | tig0017690:221998-222017 | None:intergenic | 40.0% | |
| TGACTATGTTTGCTTCTTGG+AGG | - | tig0017690:222284-222303 | Msa1362090:intron | 40.0% | |
| CAAAATTGACAAGACCTGTG+CGG | + | tig0017690:222393-222412 | None:intergenic | 40.0% | |
| GATCAGGCCAATTCGATTTC+TGG | - | tig0017690:219461-219480 | Msa1362090:intron | 45.0% | |
| CAACTTATGCTGCCTTATCC+AGG | + | tig0017690:219878-219897 | None:intergenic | 45.0% | |
| ! | CTGCATGCCTCAATTTCTAG+TGG | + | tig0017690:219907-219926 | None:intergenic | 45.0% |
| !! | AGGACATGTTGGTCTGCTTT+TGG | - | tig0017690:220046-220065 | Msa1362090:CDS | 45.0% |
| ACCCTGCAATGTTAGAGCAA+TGG | + | tig0017690:220189-220208 | None:intergenic | 45.0% | |
| CATACTATCAAAATGGGGCC+AGG | + | tig0017690:220309-220328 | None:intergenic | 45.0% | |
| ACTCTGTTCCAGATCCTACA+CGG | - | tig0017690:220385-220404 | Msa1362090:intron | 45.0% | |
| ATACAATGACCGATCCGTGT+AGG | + | tig0017690:220402-220421 | None:intergenic | 45.0% | |
| CAAAGTCGGCGAAACCAATA+TGG | + | tig0017690:220454-220473 | None:intergenic | 45.0% | |
| !! | CATATTGGTTTCGCCGACTT+TGG | - | tig0017690:220452-220471 | Msa1362090:intron | 45.0% |
| !! | TTTCGCCGACTTTGGTTCTA+TGG | - | tig0017690:220460-220479 | Msa1362090:intron | 45.0% |
| GGCGCAAGACCACAAAATAA+TGG | + | tig0017690:220506-220525 | None:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | tig0017690:221515-221534 | None:intergenic | 45.0% | |
| ! | AGTCTCAAGGGAAAGAGTAC+TGG | - | tig0017690:221547-221566 | Msa1362090:intron | 45.0% |
| ACAATTGCCAGTGAAAAGGC+TGG | - | tig0017690:221643-221662 | Msa1362090:intron | 45.0% | |
| GAAACTGGTTACTGTGGGTA+TGG | - | tig0017690:221754-221773 | Msa1362090:intron | 45.0% | |
| GAGGTGATTACAAATCTGGG+TGG | - | tig0017690:221803-221822 | Msa1362090:intron | 45.0% | |
| TTACAAATCTGGGTGGCAGA+TGG | - | tig0017690:221810-221829 | Msa1362090:intron | 45.0% | |
| GTGGCAGATGGAGAAAGAAT+GGG | - | tig0017690:221822-221841 | Msa1362090:intron | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | tig0017690:221976-221995 | None:intergenic | 45.0% | |
| TGCTTACACTTGGTTGAGAC+AGG | + | tig0017690:221988-222007 | None:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | tig0017690:222014-222033 | Msa1362090:intron | 45.0% |
| GATACGAAAGAAGATGGCTG+AGG | - | tig0017690:222226-222245 | Msa1362090:intron | 45.0% | |
| CATATCTTAGGTTTCCGCAC+AGG | - | tig0017690:222376-222395 | Msa1362090:five_prime_UTR | 45.0% | |
| ! | GTTTGTTGCGTGCCGAACAT+AGG | - | tig0017690:219399-219418 | Msa1362090:CDS | 50.0% |
| GTTCCAGATCCTACACGGAT+CGG | - | tig0017690:220390-220409 | Msa1362090:intron | 50.0% | |
| ! | TGTGGTCTTGCGCCTTTCAA+TGG | - | tig0017690:220512-220531 | Msa1362090:CDS | 50.0% |
| !!! | CGGCTGGTTTTCAGCAGATT+TGG | + | tig0017690:221062-221081 | None:intergenic | 50.0% |
| GAAAACCAGCCGACTGAACA+AGG | - | tig0017690:221070-221089 | Msa1362090:intron | 50.0% | |
| ACATACCTTGTTCAGTCGGC+TGG | + | tig0017690:221078-221097 | None:intergenic | 50.0% | |
| CAAGCGACTGAGAGTCTCAA+GGG | - | tig0017690:221535-221554 | Msa1362090:intron | 50.0% | |
| ATTGCCAGTGAAAAGGCTGG+TGG | - | tig0017690:221646-221665 | Msa1362090:intron | 50.0% | |
| TTGCCAGTGAAAAGGCTGGT+GGG | - | tig0017690:221647-221666 | Msa1362090:intron | 50.0% | |
| GGTGGCAGATGGAGAAAGAA+TGG | - | tig0017690:221821-221840 | Msa1362090:intron | 50.0% | |
| GGGATGAAGCTGAGAAAGCA+AGG | - | tig0017690:221842-221861 | Msa1362090:intron | 50.0% | |
| ! | AGGAAGATGAGATTGGCTGC+AGG | - | tig0017690:221862-221881 | Msa1362090:intron | 50.0% |
| TGACCGATCCGTGTAGGATC+TGG | + | tig0017690:220396-220415 | None:intergenic | 55.0% | |
| TGCAGAGCTCTTCGAAGAGC+CGG | + | tig0017690:221359-221378 | None:intergenic | 55.0% | |
| AGCTCTTTCACGGATGGCAC+GGG | + | tig0017690:221509-221528 | None:intergenic | 55.0% | |
| GAGCTCTTTCACGGATGGCA+CGG | + | tig0017690:221510-221529 | None:intergenic | 55.0% | |
| GCAAGCGACTGAGAGTCTCA+AGG | - | tig0017690:221534-221553 | Msa1362090:intron | 55.0% | |
| !! | GGGAAAGAGTACTGGTTCCG+AGG | - | tig0017690:221555-221574 | Msa1362090:intron | 55.0% |
| ! | TGACCCACCAGCCTTTTCAC+TGG | + | tig0017690:221653-221672 | None:intergenic | 55.0% |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | tig0017690:221655-221674 | Msa1362090:intron | 55.0% |
| ! | GATGAGATTGGCTGCAGGTG+AGG | - | tig0017690:221867-221886 | Msa1362090:intron | 55.0% |
| ATTGGCTGCAGGTGAGGATG+CGG | - | tig0017690:221873-221892 | Msa1362090:intron | 55.0% | |
| GTCTGCAATCAGCCTACGCT+TGG | - | tig0017690:222182-222201 | Msa1362090:intron | 55.0% | |
| AGAGCTCTTCGAAGAGCCGG+TGG | + | tig0017690:221356-221375 | None:intergenic | 60.0% | |
| TGGGTCACACGGTCCTCTCA+GGG | - | tig0017690:221666-221685 | Msa1362090:intron | 60.0% | |
| ACACGGTCCTCTCAGGGCTT+CGG | - | tig0017690:221672-221691 | Msa1362090:intron | 60.0% | |
| ATGTGAGCCGAAGCCCTGAG+AGG | + | tig0017690:221682-221701 | None:intergenic | 60.0% | |
| TGCAGGTGAGGATGCGGAAG+AGG | - | tig0017690:221879-221898 | Msa1362090:intron | 60.0% | |
| GGTGAGGATGCGGAAGAGGA+AGG | - | tig0017690:221883-221902 | Msa1362090:intron | 60.0% | |
| GTGGGTCACACGGTCCTCTC+AGG | - | tig0017690:221665-221684 | Msa1362090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017690 | gene | 219045 | 222542 | 219045 | ID=Msa1362090;Name=Msa1362090 |
| tig0017690 | mRNA | 219045 | 222542 | 219045 | ID=Msa1362090-mRNA-1;Parent=Msa1362090;Name=Msa1362090-mRNA-1;_AED=0.19;_eAED=0.19;_QI=176|1|1|1|0.66|0.75|4|286|327 |
| tig0017690 | exon | 219045 | 219432 | 219045 | ID=Msa1362090-mRNA-1:exon:12877;Parent=Msa1362090-mRNA-1 |
| tig0017690 | exon | 219552 | 220384 | 219552 | ID=Msa1362090-mRNA-1:exon:12876;Parent=Msa1362090-mRNA-1 |
| tig0017690 | exon | 220496 | 220553 | 220496 | ID=Msa1362090-mRNA-1:exon:12875;Parent=Msa1362090-mRNA-1 |
| tig0017690 | exon | 222376 | 222542 | 222376 | ID=Msa1362090-mRNA-1:exon:12874;Parent=Msa1362090-mRNA-1 |
| tig0017690 | five_prime_UTR | 222376 | 222542 | 222376 | ID=Msa1362090-mRNA-1:five_prime_utr;Parent=Msa1362090-mRNA-1 |
| tig0017690 | five_prime_UTR | 220545 | 220553 | 220545 | ID=Msa1362090-mRNA-1:five_prime_utr;Parent=Msa1362090-mRNA-1 |
| tig0017690 | CDS | 220496 | 220544 | 220496 | ID=Msa1362090-mRNA-1:cds;Parent=Msa1362090-mRNA-1 |
| tig0017690 | CDS | 219552 | 220384 | 219552 | ID=Msa1362090-mRNA-1:cds;Parent=Msa1362090-mRNA-1 |
| tig0017690 | CDS | 219331 | 219432 | 219331 | ID=Msa1362090-mRNA-1:cds;Parent=Msa1362090-mRNA-1 |
| tig0017690 | three_prime_UTR | 219045 | 219330 | 219045 | ID=Msa1362090-mRNA-1:three_prime_utr;Parent=Msa1362090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
