AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601700 MtrunA17_Chr4g0026941 97.419 465 7 1 1 465 81 540 0.0 935
Msa0601700 MtrunA17_Chr2g0321171 65.948 464 138 3 1 464 55 498 0.0 643
Msa0601700 MtrunA17_Chr1g0178971 60.510 471 159 5 2 464 61 512 0.0 584
Msa0601700 MtrunA17_Chr7g0225531 44.561 478 227 9 3 464 56 511 6.99e-140 411
Msa0601700 MtrunA17_Chr7g0260831 44.421 466 225 10 11 464 59 502 1.18e-136 402
Msa0601700 MtrunA17_Chr3g0119681 45.929 479 217 9 10 465 59 518 9.98e-136 401
Msa0601700 MtrunA17_Chr7g0255131 44.989 469 226 8 10 464 58 508 6.16e-135 398
Msa0601700 MtrunA17_Chr7g0260821 43.348 466 230 12 11 464 60 503 7.09e-129 383
Msa0601700 MtrunA17_Chr1g0184461 44.211 475 234 10 1 464 50 504 2.97e-124 371
Msa0601700 MtrunA17_Chr1g0184421 42.766 470 238 9 7 465 56 505 4.26e-122 365
Msa0601700 MtrunA17_Chr4g0038271 40.839 453 230 8 31 464 127 560 3.09e-111 340
Msa0601700 MtrunA17_Chr1g0164321 41.943 453 222 10 35 464 113 547 4.81e-110 336
Msa0601700 MtrunA17_Chr8g0387001 39.593 442 238 6 34 464 82 505 2.32e-105 323
Msa0601700 MtrunA17_Chr8g0348751 39.597 447 236 8 34 464 82 510 8.74e-104 319
Msa0601700 MtrunA17_Chr3g0104351 39.421 449 231 7 34 464 91 516 1.47e-102 316
Msa0601700 MtrunA17_Chr5g0429651 41.163 447 224 8 34 464 85 508 5.45e-101 311
Msa0601700 MtrunA17_Chr8g0351461 36.897 477 263 7 7 465 54 510 1.54e-98 305
Msa0601700 MtrunA17_Chr4g0067191 37.423 489 250 13 12 465 49 516 4.35e-98 304
Msa0601700 MtrunA17_Chr8g0351401 37.342 474 253 9 7 459 55 505 4.97e-98 304
Msa0601700 MtrunA17_Chr8g0351441 36.688 477 264 7 7 465 54 510 2.23e-97 302
Msa0601700 MtrunA17_Chr8g0351311 37.553 474 258 12 7 464 61 512 2.42e-95 297
Msa0601700 MtrunA17_Chr8g0351421 35.774 478 268 8 7 465 54 511 1.96e-94 294
Msa0601700 MtrunA17_Chr8g0351391 36.152 473 265 8 7 464 61 511 5.36e-92 288
Msa0601700 MtrunA17_Chr1g0204271 34.177 474 274 9 7 464 55 506 1.45e-89 281
Msa0601700 MtrunA17_Chr2g0309301 65.426 188 62 2 139 326 1 185 1.56e-82 253
Msa0601700 MtrunA17_Chr6g0449381 32.957 443 265 9 35 464 82 505 3.06e-81 260
Msa0601700 MtrunA17_Chr7g0214931 38.701 385 200 9 8 374 73 439 1.58e-80 256
Msa0601700 MtrunA17_Chr1g0184471 39.529 382 184 7 7 382 51 391 2.54e-80 254
Msa0601700 MtrunA17_Chr6g0449331 32.967 455 261 10 34 464 81 515 6.68e-78 251
Msa0601700 MtrunA17_Chr7g0227281 34.389 442 253 12 36 465 79 495 1.55e-77 250
Msa0601700 MtrunA17_Chr8g0380501 32.340 470 284 9 9 465 44 492 1.77e-77 250
Msa0601700 MtrunA17_Chr6g0449361 31.435 474 280 13 12 464 54 503 3.52e-77 249
Msa0601700 MtrunA17_Chr7g0227291 34.694 441 253 11 36 465 79 495 6.15e-77 248
Msa0601700 MtrunA17_Chr4g0004481 34.862 436 251 12 36 461 77 489 9.84e-77 248
Msa0601700 MtrunA17_Chr6g0449351 31.532 444 262 10 35 461 42 460 1.32e-76 247
Msa0601700 MtrunA17_Chr1g0163281 33.703 451 249 11 36 464 97 519 1.38e-76 248
Msa0601700 MtrunA17_Chr1g0163501 34.009 444 260 11 35 465 77 500 7.30e-75 243
Msa0601700 MtrunA17_Chr6g0449341 32.438 484 273 12 12 464 103 563 8.73e-75 245
Msa0601700 MtrunA17_Chr1g0163351 33.194 479 276 14 9 464 48 505 1.84e-74 242
Msa0601700 MtrunA17_Chr1g0163491 33.196 485 262 14 12 464 67 521 7.27e-74 241
Msa0601700 MtrunA17_Chr1g0163391 33.966 474 272 15 12 465 51 503 1.55e-73 240
Msa0601700 MtrunA17_Chr1g0163511 32.172 488 275 14 9 464 55 518 5.32e-73 239
Msa0601700 MtrunA17_Chr1g0163421 33.556 450 256 13 37 465 114 541 1.66e-71 236
Msa0601700 MtrunA17_Chr1g0171041 34.579 428 230 13 36 437 78 481 6.80e-71 233
Msa0601700 MtrunA17_Chr1g0163461 32.924 489 261 17 12 465 64 520 1.66e-69 230
Msa0601700 MtrunA17_Chr1g0163451 32.747 455 245 15 41 465 102 525 2.28e-69 229
Msa0601700 MtrunA17_Chr1g0163401 32.857 490 270 18 9 464 48 512 3.91e-67 223
Msa0601700 MtrunA17_Chr1g0183611 34.135 416 237 10 41 437 2 399 3.84e-66 218
Msa0601700 MtrunA17_Chr1g0164351 37.047 359 185 9 9 344 83 423 6.32e-66 218
Msa0601700 MtrunA17_Chr1g0163211 30.658 486 271 14 9 464 52 501 1.46e-64 216
Msa0601700 MtrunA17_Chr1g0163431 32.840 405 221 10 36 417 42 418 2.83e-60 202
Msa0601700 MtrunA17_Chr1g0204241 33.230 322 179 7 151 464 4 297 6.62e-54 182
Msa0601700 MtrunA17_Chr2g0308941 44.976 209 88 2 22 219 3 195 7.34e-54 179
Msa0601700 MtrunA17_Chr5g0403451 38.735 253 126 5 241 465 29 280 3.22e-51 175
Msa0601700 MtrunA17_Chr1g0163371 40.654 214 120 4 256 464 11 222 2.68e-47 162
Msa0601700 MtrunA17_Chr2g0309311 42.941 170 71 1 243 412 16 159 3.48e-38 137
Msa0601700 MtrunA17_Chr5g0403441 35.622 233 126 7 12 243 64 273 2.25e-36 136
Msa0601700 MtrunA17_Chr0c19g0493771 27.171 449 275 17 35 464 233 648 2.21e-32 130
Msa0601700 MtrunA17_Chr3g0128461 25.508 443 272 12 10 432 89 493 2.18e-27 114
Msa0601700 MtrunA17_Chr6g0457421 25.729 377 242 8 66 436 136 480 2.22e-27 114
Msa0601700 MtrunA17_Chr2g0308951 44.444 117 49 1 103 219 1 101 1.05e-26 103
Msa0601700 MtrunA17_Chr7g0215181 25.199 377 242 9 67 436 139 482 1.64e-26 112
Msa0601700 MtrunA17_Chr5g0396521 23.368 475 299 14 35 465 118 571 9.91e-26 110
Msa0601700 MtrunA17_Chr8g0357121 46.465 99 53 0 339 437 26 124 1.33e-25 101
Msa0601700 MtrunA17_Chr7g0248991 27.049 366 217 16 43 391 23 355 4.93e-25 106
Msa0601700 MtrunA17_Chr7g0235261 26.173 405 251 11 43 434 112 481 1.63e-24 106
Msa0601700 MtrunA17_Chr1g0164341 47.475 99 48 3 368 464 1 97 4.45e-24 96.7
Msa0601700 MtrunA17_Chr4g0004601 24.215 446 289 12 2 434 93 502 6.07e-24 104
Msa0601700 MtrunA17_Chr8g0357111 35.366 164 89 1 7 170 54 200 1.10e-22 95.5
Msa0601700 MtrunA17_Chr2g0308651 27.206 408 232 14 63 440 19 391 2.03e-22 99.4
Msa0601700 MtrunA17_Chr1g0163361 30.208 192 97 4 36 216 96 261 2.64e-22 96.7
Msa0601700 MtrunA17_Chr8g0354531 23.944 426 265 15 34 440 236 621 8.96e-22 98.6
Msa0601700 MtrunA17_Chr8g0362731 26.250 400 256 11 42 432 8 377 1.24e-21 96.7
Msa0601700 MtrunA17_Chr4g0030711 30.213 235 142 7 236 451 276 507 1.60e-21 97.4
Msa0601700 MtrunA17_Chr6g0484811 24.434 442 269 15 19 433 67 470 3.60e-21 96.3
Msa0601700 MtrunA17_Chr1g0179811 23.767 446 295 12 35 464 123 539 4.08e-21 96.3
Msa0601700 MtrunA17_Chr6g0484841 24.201 438 272 15 20 433 68 469 4.24e-21 95.9
Msa0601700 MtrunA17_Chr8g0354511 24.413 426 266 15 33 440 113 500 1.68e-20 94.4
Msa0601700 MtrunA17_Chr6g0451691 24.619 394 253 15 64 434 123 495 1.77e-20 94.4
Msa0601700 MtrunA17_Chr8g0354571 23.294 425 268 15 35 440 115 500 2.41e-20 93.6
Msa0601700 MtrunA17_Chr1g0164331 45.833 96 50 2 344 437 1 96 3.04e-20 87.0
Msa0601700 MtrunA17_Chr2g0310381 23.707 464 290 13 19 458 58 481 5.08e-20 92.4
Msa0601700 MtrunA17_Chr6g0451681 28.169 213 143 4 235 439 239 449 6.39e-20 92.4
Msa0601700 MtrunA17_Chr2g0280011 32.597 181 115 3 262 436 3 182 1.22e-19 87.4
Msa0601700 MtrunA17_Chr2g0310391 22.777 461 298 12 19 458 58 481 1.47e-19 91.3
Msa0601700 MtrunA17_Chr1g0205361 28.870 239 157 5 208 438 234 467 2.68e-19 90.5
Msa0601700 MtrunA17_Chr4g0008101 23.483 379 261 10 72 434 126 491 3.35e-19 90.1
Msa0601700 MtrunA17_Chr4g0030701 27.236 246 153 7 229 451 262 504 5.50e-19 89.7
Msa0601700 MtrunA17_Chr8g0382901 23.843 432 277 12 19 441 58 446 5.65e-19 90.1
Msa0601700 MtrunA17_Chr8g0382901 24.083 436 286 10 19 441 522 925 1.72e-18 88.6
Msa0601700 MtrunA17_Chr4g0046321 26.217 267 173 6 197 442 217 480 8.14e-19 89.0
Msa0601700 MtrunA17_Chr2g0308931 38.393 112 53 1 43 154 3 98 1.86e-18 81.6
Msa0601700 MtrunA17_Chr2g0280061 32.044 181 116 3 262 436 3 182 2.87e-18 83.2
Msa0601700 MtrunA17_Chr2g0280081 32.979 188 118 4 255 436 790 975 3.58e-18 87.8
Msa0601700 MtrunA17_Chr2g0280081 34.091 176 109 3 267 436 300 474 2.74e-17 85.1
Msa0601700 MtrunA17_Chr1g0207841 29.557 203 130 5 259 451 307 506 4.67e-18 86.7
Msa0601700 MtrunA17_Chr3g0101731 23.278 421 276 14 35 440 83 471 4.84e-18 86.7
Msa0601700 MtrunA17_Chr2g0313771 23.611 432 263 15 32 440 112 499 5.71e-18 86.3
Msa0601700 MtrunA17_Chr4g0058211 30.890 191 125 4 252 438 1 188 7.28e-18 82.4
Msa0601700 MtrunA17_Chr8g0387101 32.143 224 140 6 224 437 256 477 1.06e-17 85.5
Msa0601700 MtrunA17_Chr4g0046351 25.651 269 172 9 197 442 217 480 1.36e-17 85.1
Msa0601700 MtrunA17_Chr6g0463801 23.753 421 289 12 19 433 68 462 1.44e-17 85.1
Msa0601700 MtrunA17_Chr6g0466941 26.506 249 162 8 203 434 241 485 1.68e-17 85.1
Msa0601700 MtrunA17_Chr6g0466901 22.164 379 256 10 76 434 125 484 2.32e-17 84.7
Msa0601700 MtrunA17_Chr2g0314731 25.455 220 156 4 223 436 248 465 2.58e-17 84.3
Msa0601700 MtrunA17_Chr4g0058191 30.435 184 124 3 256 438 280 460 4.45e-17 83.6
Msa0601700 MtrunA17_Chr2g0280071 31.461 178 115 3 262 433 328 504 5.17e-17 84.0
Msa0601700 MtrunA17_Chr8g0364081 23.645 406 245 12 66 440 146 517 5.89e-17 83.6
Msa0601700 MtrunA17_Chr1g0197871 29.958 237 153 8 212 444 243 470 6.50e-17 83.2
Msa0601700 MtrunA17_Chr4g0046331 25.556 270 171 9 198 442 218 482 6.96e-17 83.2
Msa0601700 MtrunA17_Chr1g0205371 31.356 236 145 6 211 438 242 468 8.54e-17 82.8
Msa0601700 MtrunA17_Chr6g0451741 26.531 245 164 7 204 434 271 513 8.94e-17 82.8
Msa0601700 MtrunA17_Chr4g0039901 27.854 219 148 5 222 433 249 464 8.95e-17 82.8
Msa0601700 MtrunA17_Chr1g0197881 28.326 233 154 6 216 444 246 469 1.19e-16 82.4
Msa0601700 MtrunA17_Chr1g0197851 28.326 233 154 6 216 444 247 470 1.20e-16 82.4
Msa0601700 MtrunA17_Chr1g0197891 29.185 233 152 7 216 444 247 470 1.29e-16 82.0
Msa0601700 MtrunA17_Chr7g0224561 25.806 279 170 9 192 442 207 476 1.35e-16 82.0
Msa0601700 MtrunA17_Chr3g0101631 23.853 436 284 13 19 441 67 467 1.38e-16 82.0
Msa0601700 MtrunA17_Chr5g0405001 27.386 241 148 8 211 432 245 477 1.76e-16 81.6
Msa0601700 MtrunA17_Chr4g0058231 23.077 442 284 12 22 438 61 471 2.00e-16 81.6
Msa0601700 MtrunA17_Chr5g0430071 28.333 180 124 2 256 433 146 322 2.07e-16 80.5
Msa0601700 MtrunA17_Chr2g0313781 21.583 417 281 12 37 433 108 498 2.64e-16 81.3
Msa0601700 MtrunA17_Chr7g0255531 31.414 191 123 4 248 432 272 460 2.86e-16 81.3
Msa0601700 MtrunA17_Chr1g0203141 23.659 410 257 15 66 459 141 510 3.04e-16 81.3
Msa0601700 MtrunA17_Chr8g0369791 28.571 273 152 10 217 464 211 465 3.20e-16 80.9
Msa0601700 MtrunA17_Chr2g0280121 33.523 176 110 3 267 436 306 480 3.28e-16 80.9
Msa0601700 MtrunA17_Chr5g0431641 23.632 457 302 13 7 453 64 483 3.47e-16 80.9
Msa0601700 MtrunA17_Chr7g0224551 25.448 279 171 9 192 442 207 476 3.95e-16 80.9
Msa0601700 MtrunA17_Chr8g0390871 28.814 177 124 2 256 432 16 190 4.00e-16 77.8
Msa0601700 MtrunA17_Chr6g0451771 29.189 185 127 3 252 434 7 189 4.10e-16 77.4
Msa0601700 MtrunA17_Chr4g0063221 24.569 464 281 17 5 442 78 498 4.31e-16 80.5
Msa0601700 MtrunA17_Chr2g0313821 21.928 415 268 12 37 432 108 485 4.53e-16 80.5
Msa0601700 MtrunA17_Chr5g0430081 28.333 180 124 2 256 433 291 467 7.13e-16 80.1
Msa0601700 MtrunA17_Chr8g0381541 24.324 444 264 18 17 440 76 467 8.32e-16 79.7
Msa0601700 MtrunA17_Chr5g0431511 31.351 185 107 5 258 433 294 467 9.72e-16 79.3
Msa0601700 MtrunA17_Chr1g0160861 26.923 234 158 5 211 438 82 308 1.31e-15 77.8
Msa0601700 MtrunA17_Chr8g0390881 25.941 239 161 5 208 432 232 468 1.39e-15 79.0
Msa0601700 MtrunA17_Chr5g0395321 26.364 220 156 4 219 436 250 465 1.52e-15 79.0
Msa0601700 MtrunA17_Chr1g0160851 26.496 234 159 5 211 438 241 467 1.60e-15 79.0
Msa0601700 MtrunA17_Chr1g0164211 28.194 227 152 6 217 438 244 464 1.72e-15 78.6
Msa0601700 MtrunA17_Chr8g0381571 25.176 425 246 18 17 421 76 448 2.59e-15 78.2
Msa0601700 MtrunA17_Chr6g0472221 21.078 408 272 12 66 459 150 521 2.95e-15 78.2
Msa0601700 MtrunA17_Chr5g0430131 21.097 237 175 2 208 433 233 468 3.33e-15 77.8
Msa0601700 MtrunA17_Chr4g0058201 23.077 442 281 15 19 438 58 462 3.80e-15 77.8
Msa0601700 MtrunA17_Chr4g0035921 24.385 447 254 17 24 432 77 477 3.85e-15 77.8
Msa0601700 MtrunA17_Chr4g0047691 26.471 238 167 3 205 436 248 483 4.76e-15 77.4
Msa0601700 MtrunA17_Chr8g0346261 28.634 227 148 9 215 433 292 512 6.05e-15 77.0
Msa0601700 MtrunA17_Chr7g0258211 22.633 433 277 14 35 441 85 485 6.15e-15 77.0
Msa0601700 MtrunA17_Chr5g0431671 23.502 434 291 11 35 459 87 488 7.11e-15 76.6
Msa0601700 MtrunA17_Chr4g0014051 26.641 259 167 6 203 450 260 506 8.02e-15 76.6
Msa0601700 MtrunA17_Chr1g0193811 21.542 441 294 12 37 461 109 513 8.20e-15 76.6
Msa0601700 MtrunA17_Chr6g0472311 31.844 179 118 3 256 433 306 481 8.20e-15 76.6
Msa0601700 MtrunA17_Chr2g0280041 30.387 181 119 3 262 436 327 506 8.53e-15 76.6
Msa0601700 MtrunA17_Chr4g0011981 26.020 196 139 3 259 450 289 482 9.06e-15 76.3
Msa0601700 MtrunA17_Chr5g0395331 25.561 223 158 4 218 436 254 472 9.89e-15 76.3
Msa0601700 MtrunA17_Chr5g0445441 25.877 228 158 4 220 440 288 511 9.97e-15 76.6
Msa0601700 MtrunA17_Chr8g0380471 25.723 311 196 12 165 461 184 473 1.01e-14 76.3
Msa0601700 MtrunA17_Chr8g0356001 29.258 229 147 7 213 433 250 471 1.08e-14 76.3
Msa0601700 MtrunA17_Chr2g0314721 24.820 278 179 8 167 436 221 476 1.32e-14 75.9
Msa0601700 MtrunA17_Chr5g0409051 30.000 230 146 8 208 432 256 475 1.35e-14 75.9
Msa0601700 MtrunA17_Chr5g0413911 28.421 190 131 3 256 441 316 504 1.36e-14 75.9
Msa0601700 MtrunA17_Chr2g0314781 29.139 151 105 2 286 436 4 152 1.73e-14 71.6
Msa0601700 MtrunA17_Chr5g0395381 25.561 223 154 5 219 436 225 440 1.79e-14 75.5
Msa0601700 MtrunA17_Chr5g0445421 29.500 200 131 4 257 453 344 536 1.97e-14 75.5
Msa0601700 MtrunA17_Chr1g0203151 26.415 265 171 10 206 459 255 506 2.35e-14 75.1
Msa0601700 MtrunA17_Chr7g0246221 29.310 174 121 2 263 436 300 471 2.46e-14 75.1
Msa0601700 MtrunA17_Chr2g0310351 30.286 175 118 3 267 441 1 171 2.54e-14 71.6
Msa0601700 MtrunA17_Chr4g0020041 22.388 469 288 18 8 440 44 472 3.03e-14 74.7
Msa0601700 MtrunA17_Chr1g0174481 23.934 422 274 14 35 438 80 472 3.11e-14 74.7
Msa0601700 MtrunA17_Chr5g0445531 25.223 448 265 15 35 459 86 486 3.18e-14 74.7
Msa0601700 MtrunA17_Chr3g0094231 28.502 207 128 7 248 440 272 472 3.19e-14 74.7
Msa0601700 MtrunA17_Chr4g0024771 23.831 449 293 13 19 453 70 483 3.28e-14 74.7
Msa0601700 MtrunA17_Chr8g0361471 25.000 428 262 18 35 440 81 471 5.03e-14 74.3
Msa0601700 MtrunA17_Chr5g0408181 28.137 263 165 8 210 464 217 463 5.22e-14 73.9
Msa0601700 MtrunA17_Chr5g0445381 23.851 457 305 13 5 453 93 514 7.25e-14 73.6
Msa0601700 MtrunA17_Chr3g0101611 22.030 463 301 14 19 460 68 491 8.02e-14 73.6
Msa0601700 MtrunA17_Chr2g0307301 24.812 266 179 8 203 454 248 506 9.90e-14 73.2
Msa0601700 MtrunA17_Chr4g0046681 31.395 172 112 4 266 434 30 198 9.92e-14 70.9
Msa0601700 MtrunA17_Chr1g0156101 25.854 205 147 3 235 436 277 479 1.05e-13 73.2
Msa0601700 MtrunA17_Chr4g0011961 24.747 198 141 4 258 450 287 481 1.06e-13 73.2
Msa0601700 MtrunA17_Chr7g0246131 26.389 288 182 8 173 433 185 469 1.23e-13 72.8
Msa0601700 MtrunA17_Chr2g0307291 24.590 244 166 7 203 432 248 487 1.25e-13 72.8
Msa0601700 MtrunA17_Chr4g0047661 26.360 239 167 4 205 436 249 485 1.46e-13 72.8
Msa0601700 MtrunA17_Chr7g0246121 27.650 217 141 6 227 433 255 465 1.65e-13 72.4
Msa0601700 MtrunA17_Chr4g0046631 24.550 444 286 17 9 434 74 486 1.83e-13 72.4
Msa0601700 MtrunA17_Chr2g0313801 21.340 403 263 12 66 451 134 499 1.85e-13 72.4
Msa0601700 MtrunA17_Chr3g0101701 25.541 231 153 6 219 438 253 475 1.86e-13 72.4
Msa0601700 MtrunA17_Chr3g0107511 24.169 331 213 11 146 464 173 477 2.36e-13 72.0
Msa0601700 MtrunA17_Chr8g0354541 27.500 160 106 4 284 440 2 154 3.27e-13 67.8
Msa0601700 MtrunA17_Chr5g0431591 24.419 258 177 6 210 459 58 305 3.33e-13 70.5
Msa0601700 MtrunA17_Chr1g0184481 46.377 69 35 2 398 464 3 71 3.36e-13 64.7
Msa0601700 MtrunA17_Chr3g0101821 22.864 433 290 14 19 436 66 469 3.67e-13 71.6
Msa0601700 MtrunA17_Chr3g0084921 22.321 448 286 16 34 450 80 496 3.93e-13 71.2
Msa0601700 MtrunA17_Chr5g0430041 30.172 116 81 0 318 433 25 140 4.04e-13 67.8
Msa0601700 MtrunA17_Chr8g0364651 29.255 188 128 4 256 439 285 471 4.16e-13 71.2
Msa0601700 MtrunA17_Chr3g0086661 24.934 377 248 12 71 433 116 471 5.05e-13 70.9
Msa0601700 MtrunA17_Chr8g0377341 22.931 423 278 14 34 443 114 501 5.72e-13 70.9
Msa0601700 MtrunA17_Chr3g0101671 26.449 276 179 9 176 440 213 475 6.13e-13 70.9
Msa0601700 MtrunA17_Chr5g0445451 24.481 241 165 5 223 453 250 483 6.18e-13 70.9
Msa0601700 MtrunA17_Chr3g0101711 26.407 231 153 7 219 440 252 474 6.60e-13 70.5
Msa0601700 MtrunA17_Chr1g0153371 28.395 243 142 9 220 447 229 454 6.80e-13 70.5
Msa0601700 MtrunA17_Chr8g0351801 27.064 218 136 6 237 436 274 486 6.87e-13 70.5
Msa0601700 MtrunA17_Chr2g0293421 25.896 251 159 9 211 447 236 473 7.39e-13 70.5
Msa0601700 MtrunA17_Chr4g0047641 28.415 183 129 2 254 436 304 484 9.05e-13 70.1
Msa0601700 MtrunA17_Chr3g0107501 27.170 265 173 9 211 464 222 477 9.58e-13 70.1
Msa0601700 MtrunA17_Chr8g0372251 23.041 434 279 16 8 415 48 452 1.11e-12 70.1
Msa0601700 MtrunA17_Chr6g0466331 25.176 425 265 18 35 440 81 471 1.14e-12 70.1
Msa0601700 MtrunA17_Chr3g0101691 26.033 242 161 8 211 440 240 475 1.29e-12 69.7
Msa0601700 MtrunA17_Chr3g0135841 25.095 263 158 9 225 465 292 537 1.50e-12 69.7
Msa0601700 MtrunA17_Chr5g0419451 25.000 236 158 6 208 432 257 484 1.55e-12 69.7
Msa0601700 MtrunA17_Chr3g0116681 24.569 232 166 4 208 433 240 468 1.57e-12 69.3
Msa0601700 MtrunA17_Chr6g0465511 27.679 224 137 8 231 440 259 471 1.68e-12 69.3
Msa0601700 MtrunA17_Chr5g0443731 25.630 238 163 7 211 440 219 450 1.85e-12 69.3
Msa0601700 MtrunA17_Chr6g0458561 25.000 184 134 3 255 436 316 497 2.14e-12 68.9
Msa0601700 MtrunA17_Chr5g0430101 22.624 221 155 3 226 433 249 466 2.32e-12 68.9
Msa0601700 MtrunA17_Chr5g0445461 26.446 242 171 5 218 459 253 487 2.52e-12 68.9
Msa0601700 MtrunA17_Chr1g0151221 24.904 261 161 11 225 465 284 529 2.61e-12 68.9
Msa0601700 MtrunA17_Chr2g0288661 23.457 243 170 5 203 432 248 487 2.73e-12 68.9
Msa0601700 MtrunA17_Chr5g0403931 22.034 354 234 13 122 461 152 477 3.33e-12 68.6
Msa0601700 MtrunA17_Chr3g0078411 27.039 233 156 7 218 445 225 448 3.35e-12 68.2
Msa0601700 MtrunA17_Chr6g0455461 27.039 233 156 7 218 445 225 448 3.41e-12 68.2
Msa0601700 MtrunA17_Chr5g0401691 28.022 182 126 5 257 438 304 480 3.59e-12 68.6
Msa0601700 MtrunA17_Chr4g0011851 25.243 206 146 4 257 457 6 208 3.64e-12 65.9
Msa0601700 MtrunA17_Chr1g0174461 21.749 446 303 15 12 438 59 477 3.97e-12 68.2
Msa0601700 MtrunA17_Chr3g0086651 25.199 377 247 12 71 433 116 471 4.37e-12 68.2
Msa0601700 MtrunA17_Chr5g0430151 27.350 117 85 0 317 433 24 140 4.43e-12 64.7
Msa0601700 MtrunA17_Chr4g0047631 21.889 434 291 13 19 436 79 480 4.64e-12 68.2
Msa0601700 MtrunA17_Chr1g0200961 26.337 243 167 4 201 433 222 462 4.82e-12 67.8
Msa0601700 MtrunA17_Chr7g0218611 25.843 178 127 4 257 433 292 465 7.80e-12 67.4
Msa0601700 MtrunA17_Chr3g0101661 26.754 228 153 7 219 438 253 474 7.98e-12 67.4
Msa0601700 MtrunA17_Chr2g0293411 24.701 251 162 8 211 447 235 472 8.48e-12 67.0
Msa0601700 MtrunA17_Chr5g0430091 25.000 180 130 2 256 433 293 469 1.05e-11 67.0
Msa0601700 MtrunA17_Chr8g0351411 54.348 46 21 0 368 413 1 46 1.08e-11 59.7
Msa0601700 MtrunA17_Chr5g0430031 24.444 180 131 2 256 433 293 469 1.25e-11 66.6
Msa0601700 MtrunA17_Chr4g0044851 28.235 255 154 9 220 462 231 468 1.33e-11 66.6
Msa0601700 MtrunA17_Chr5g0403321 25.170 441 254 17 28 433 72 471 1.36e-11 66.6
Msa0601700 MtrunA17_Chr3g0101741 22.554 368 249 10 72 433 51 388 1.51e-11 66.2
Msa0601700 MtrunA17_Chr1g0174431 28.161 174 115 4 270 436 4 174 2.71e-11 63.2
Msa0601700 MtrunA17_Chr5g0431501 22.961 331 223 10 121 433 151 467 2.96e-11 65.5
Msa0601700 MtrunA17_Chr5g0431461 22.961 331 223 10 121 433 151 467 2.96e-11 65.5
Msa0601700 MtrunA17_Chr5g0403331 27.473 182 128 3 260 441 298 475 3.62e-11 65.1
Msa0601700 MtrunA17_Chr8g0339861 25.514 243 151 8 211 439 237 463 3.63e-11 65.1
Msa0601700 MtrunA17_Chr8g0355961 27.391 230 150 6 213 433 250 471 6.07e-11 64.3
Msa0601700 MtrunA17_Chr7g0254641 25.726 241 162 7 208 433 241 479 6.14e-11 64.7
Msa0601700 MtrunA17_Chr5g0430111 25.735 136 96 2 256 389 293 425 6.29e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601700 AT2G27690.1 60.128 469 165 5 2 465 44 495 0.0 578
Msa0601700 AT3G48520.1 47.436 468 212 7 10 465 55 500 8.98e-140 411
Msa0601700 AT3G56630.1 45.064 466 230 6 10 465 50 499 4.99e-132 391
Msa0601700 AT5G63450.1 47.222 468 212 8 10 464 57 502 1.76e-131 390
Msa0601700 AT5G63450.2 47.222 468 212 8 10 464 115 560 1.68e-130 389
Msa0601700 AT1G34540.1 43.777 466 235 7 10 465 50 498 2.15e-128 382
Msa0601700 AT3G01900.1 41.595 464 238 7 10 464 51 490 6.55e-122 365
Msa0601700 AT5G23190.1 42.731 454 222 7 31 465 107 541 1.48e-119 361
Msa0601700 AT5G08250.1 41.266 458 224 7 30 465 45 479 7.46e-117 352
Msa0601700 AT5G08250.2 41.266 458 224 7 30 465 107 541 3.02e-116 352
Msa0601700 AT1G63710.1 40.541 444 233 8 34 464 82 507 2.60e-108 331
Msa0601700 AT2G45970.1 40.268 447 233 7 34 464 82 510 2.49e-105 323
Msa0601700 AT1G01600.1 39.111 450 237 9 34 464 82 513 5.40e-103 318
Msa0601700 AT1G13140.1 38.938 452 235 8 35 465 94 525 1.50e-102 317
Msa0601700 AT4G00360.1 38.359 451 237 9 34 464 82 511 2.74e-102 316
Msa0601700 AT2G45510.1 38.901 473 252 8 10 465 57 509 7.67e-102 314
Msa0601700 AT1G24540.1 39.556 450 232 7 35 464 91 520 5.05e-101 312
Msa0601700 AT1G69500.1 36.056 502 257 9 7 465 44 524 1.84e-98 305
Msa0601700 AT3G26125.1 38.043 460 236 8 35 465 94 533 2.54e-98 306
Msa0601700 AT1G13150.1 38.106 454 240 7 33 465 85 518 1.41e-97 303
Msa0601700 AT2G44890.1 37.844 473 257 8 10 465 57 509 6.51e-97 301
Msa0601700 AT5G58860.1 38.702 447 235 8 34 464 85 508 3.46e-95 297
Msa0601700 AT1G13140.2 38.085 449 217 8 35 465 94 499 4.52e-95 296
Msa0601700 AT2G23180.1 36.726 452 245 11 35 465 82 513 1.17e-93 293
Msa0601700 AT2G44890.2 36.596 470 249 9 10 465 57 491 5.67e-88 277
Msa0601700 AT4G39480.1 35.398 452 249 11 36 464 82 513 1.24e-87 277
Msa0601700 AT4G39490.1 34.430 456 253 10 35 464 81 516 1.49e-85 272
Msa0601700 AT2G21910.1 34.452 447 256 9 35 464 80 506 5.71e-84 268
Msa0601700 AT4G39500.1 34.978 446 254 8 35 464 41 466 4.99e-81 259
Msa0601700 AT4G39500.2 34.978 446 254 8 35 464 91 516 3.70e-80 258
Msa0601700 AT5G52320.1 32.553 470 276 13 10 461 53 499 1.51e-79 256
Msa0601700 AT5G52320.2 32.618 466 273 13 10 457 53 495 5.40e-79 254
Msa0601700 AT1G65340.1 32.731 443 258 10 35 461 82 500 2.99e-77 250
Msa0601700 AT4G32170.1 33.708 445 259 8 35 464 80 503 6.86e-77 249
Msa0601700 AT4G39510.1 34.452 447 255 11 35 464 80 505 1.32e-74 243
Msa0601700 AT1G47620.1 32.366 448 262 10 36 464 90 515 2.13e-73 240
Msa0601700 AT1G57750.1 32.127 442 260 9 36 464 82 496 4.47e-73 239
Msa0601700 AT5G02900.1 32.594 451 239 12 36 464 72 479 1.46e-67 224
Msa0601700 AT1G57750.2 32.514 366 211 6 36 390 82 422 9.12e-60 202
Msa0601700 AT5G24910.1 25.169 445 280 12 9 432 89 501 8.25e-27 113
Msa0601700 AT1G31800.1 25.835 449 283 17 35 465 154 570 8.51e-27 114
Msa0601700 AT3G53130.1 26.000 450 280 16 35 464 123 539 1.25e-26 113
Msa0601700 AT4G15110.1 22.970 505 318 16 7 465 100 579 1.83e-26 112
Msa0601700 AT4G13310.1 25.455 440 285 13 18 444 61 470 7.96e-24 104
Msa0601700 AT2G30770.1 30.400 250 167 3 208 453 233 479 4.07e-23 102
Msa0601700 AT5G24900.1 25.112 446 278 17 9 432 85 496 1.48e-22 100
Msa0601700 AT4G13290.1 26.037 434 282 14 18 444 62 463 2.88e-22 99.8
Msa0601700 AT5G24900.2 25.366 410 255 15 42 432 2 379 5.47e-21 95.1
Msa0601700 AT2G30750.1 28.968 252 168 4 208 453 233 479 1.39e-20 94.7
Msa0601700 AT5G52400.1 28.090 267 176 8 204 461 257 516 1.57e-20 94.7
Msa0601700 AT1G11610.2 24.576 472 284 14 18 462 62 488 5.99e-20 92.8
Msa0601700 AT3G48270.1 30.270 185 128 1 260 444 281 464 9.88e-20 92.0
Msa0601700 AT5G51900.1 29.514 288 124 11 199 465 11 240 1.38e-19 88.2
Msa0601700 AT1G11610.1 24.726 457 274 14 18 446 62 476 5.78e-19 89.7
Msa0601700 AT5G38450.1 24.227 388 242 9 65 436 138 489 6.17e-19 89.7
Msa0601700 AT3G14640.1 24.941 421 252 18 34 432 105 483 8.28e-19 89.4
Msa0601700 AT2G26710.1 27.366 391 223 17 62 432 135 484 8.45e-19 89.4
Msa0601700 AT3G14640.2 24.941 421 252 18 34 432 127 505 1.19e-18 89.0
Msa0601700 AT3G48300.1 22.894 463 303 15 13 461 55 477 1.67e-18 88.2
Msa0601700 AT3G48300.2 22.894 463 303 15 13 461 57 479 1.68e-18 88.2
Msa0601700 AT3G61040.1 32.961 179 117 3 256 433 285 461 3.54e-18 87.4
Msa0601700 AT1G67110.1 25.197 381 238 9 66 436 140 483 4.82e-18 87.0
Msa0601700 AT3G48310.1 26.126 222 157 2 221 436 237 457 6.70e-18 86.7
Msa0601700 AT2G24180.1 24.043 470 301 16 18 464 65 501 9.67e-17 83.2
Msa0601700 AT1G64940.1 27.778 180 127 3 255 433 299 476 1.43e-16 82.4
Msa0601700 AT3G48280.1 29.508 183 128 1 260 442 281 462 1.51e-16 82.4
Msa0601700 AT1G16410.1 25.407 307 190 10 184 454 234 537 1.62e-16 82.4
Msa0601700 AT2G40890.1 31.937 191 122 4 248 432 271 459 1.81e-16 82.0
Msa0601700 AT5G07990.1 26.020 392 230 12 71 438 117 472 1.81e-16 82.0
Msa0601700 AT3G25180.1 26.437 261 168 8 200 450 246 492 2.07e-16 82.0
Msa0601700 AT4G19230.1 26.523 279 169 8 201 459 195 457 3.94e-16 80.9
Msa0601700 AT1G64950.1 28.804 184 128 3 255 437 298 479 5.08e-16 80.9
Msa0601700 AT5G45340.1 28.846 260 158 8 210 461 219 459 5.77e-16 80.5
Msa0601700 AT1G33730.1 29.218 243 157 6 208 440 104 341 6.14e-16 79.7
Msa0601700 AT1G33730.2 29.218 243 157 6 208 440 104 341 6.14e-16 79.7
Msa0601700 AT3G14620.1 21.364 440 301 14 8 432 75 484 7.36e-16 80.5
Msa0601700 AT5G24950.1 25.957 235 166 2 208 436 232 464 7.43e-16 80.1
Msa0601700 AT4G37340.1 27.386 241 156 6 208 441 236 464 1.13e-15 79.7
Msa0601700 AT2G46950.1 25.561 446 263 15 37 459 166 565 1.54e-15 79.3
Msa0601700 AT1G16400.1 25.620 242 165 6 208 436 258 497 2.97e-15 78.6
Msa0601700 AT5G38970.2 28.017 232 154 6 215 441 141 364 6.03e-15 76.6
Msa0601700 AT5G38970.4 28.017 232 154 6 215 441 141 364 6.03e-15 76.6
Msa0601700 AT2G45550.1 30.000 190 124 5 252 440 296 477 7.60e-15 77.0
Msa0601700 AT2G23190.1 28.270 237 148 6 210 438 283 505 7.66e-15 77.4
Msa0601700 AT3G14680.1 23.333 420 258 16 34 432 105 481 8.03e-15 77.0
Msa0601700 AT5G38970.1 28.017 232 154 6 215 441 222 445 8.04e-15 77.0
Msa0601700 AT3G53280.1 23.272 434 278 12 22 433 61 461 1.22e-14 76.6
Msa0601700 AT5G35715.1 24.324 370 245 11 76 433 55 401 2.13e-14 75.5
Msa0601700 AT3G20100.1 23.849 239 168 5 221 448 256 491 2.80e-14 75.5
Msa0601700 AT1G64930.1 27.419 186 130 3 255 437 297 480 2.83e-14 75.5
Msa0601700 AT1G33720.4 26.295 251 165 9 203 440 102 345 3.89e-14 74.3
Msa0601700 AT1G33720.3 26.295 251 165 9 203 440 102 345 3.89e-14 74.3
Msa0601700 AT1G33720.5 26.295 251 165 9 203 440 102 345 3.89e-14 74.3
Msa0601700 AT3G26210.1 21.543 376 247 11 76 433 120 465 3.95e-14 74.7
Msa0601700 AT5G42590.1 31.122 196 131 3 256 448 285 479 4.31e-14 74.7
Msa0601700 AT1G33720.1 26.295 251 165 9 203 440 234 477 4.54e-14 74.7
Msa0601700 AT3G48320.1 28.108 185 132 1 260 444 282 465 4.67e-14 74.7
Msa0601700 AT4G13770.1 26.087 230 153 7 220 440 248 469 7.64e-14 73.9
Msa0601700 AT5G47990.1 25.941 239 159 6 214 438 247 481 7.87e-14 73.9
Msa0601700 AT4G15380.1 27.184 206 136 5 241 435 272 474 8.79e-14 73.9
Msa0601700 AT2G12190.1 27.957 186 129 3 255 437 298 481 9.67e-14 73.6
Msa0601700 AT3G14650.1 21.556 450 295 14 5 432 68 481 1.04e-13 73.6
Msa0601700 AT3G20940.1 25.764 229 156 5 221 438 257 482 1.09e-13 73.6
Msa0601700 AT3G14630.1 22.277 404 273 11 38 432 106 477 1.42e-13 73.2
Msa0601700 AT1G13110.1 24.737 380 247 13 76 440 121 476 1.68e-13 72.8
Msa0601700 AT5G36110.1 23.563 348 236 12 122 465 156 477 1.79e-13 72.8
Msa0601700 AT2G45570.1 29.902 204 134 5 238 440 283 478 1.83e-13 72.8
Msa0601700 AT3G14630.2 22.277 404 273 11 38 432 161 532 2.12e-13 72.8
Msa0601700 AT5G25900.1 25.292 257 181 5 197 451 247 494 2.21e-13 72.4
Msa0601700 AT3G44250.1 23.326 433 282 11 21 433 60 462 2.34e-13 72.4
Msa0601700 AT2G45560.1 29.891 184 120 4 252 433 296 472 2.71e-13 72.4
Msa0601700 AT3G26190.1 23.889 360 237 11 76 421 117 453 2.90e-13 72.0
Msa0601700 AT3G48290.1 27.586 174 125 1 260 433 283 455 2.90e-13 72.0
Msa0601700 AT5G04330.1 23.228 254 172 5 195 432 222 468 3.01e-13 72.0
Msa0601700 AT3G03470.1 27.604 192 124 4 257 437 293 480 3.06e-13 72.0
Msa0601700 AT5G09970.1 23.934 422 273 18 31 433 111 503 4.19e-13 71.6
Msa0601700 AT3G14690.1 22.170 424 266 14 34 436 105 485 4.29e-13 71.6
Msa0601700 AT3G14690.2 22.170 424 266 14 34 436 140 520 4.31e-13 71.6
Msa0601700 AT4G19230.2 26.190 252 152 7 201 432 195 432 5.25e-13 71.2
Msa0601700 AT2G23220.1 27.347 245 156 6 201 438 247 476 7.08e-13 70.9
Msa0601700 AT2G42850.1 26.772 254 171 8 214 461 236 480 7.99e-13 70.9
Msa0601700 AT4G36220.1 29.143 175 118 5 260 432 309 479 8.10e-13 70.9
Msa0601700 AT1G01190.2 28.054 221 144 8 220 433 291 503 9.26e-13 70.9
Msa0601700 AT1G01190.1 28.054 221 144 8 220 433 286 498 9.94e-13 70.5
Msa0601700 AT3G26200.1 22.300 426 296 10 21 433 60 463 1.32e-12 70.1
Msa0601700 AT3G48290.2 34.167 120 79 0 314 433 362 481 1.40e-12 70.1
Msa0601700 AT3G26290.2 25.871 402 250 15 79 460 136 509 1.42e-12 70.1
Msa0601700 AT1G13100.1 23.056 373 248 11 76 433 114 462 1.44e-12 70.1
Msa0601700 AT3G26290.1 25.871 402 250 15 79 460 123 496 1.50e-12 70.1
Msa0601700 AT2G46960.1 26.068 234 161 5 234 459 167 396 2.23e-12 68.9
Msa0601700 AT2G46960.2 26.068 234 161 5 234 459 283 512 2.55e-12 69.3
Msa0601700 AT3G26270.1 24.066 241 171 4 205 436 233 470 2.57e-12 69.3
Msa0601700 AT3G20110.1 25.481 208 148 5 259 465 297 498 2.86e-12 68.9
Msa0601700 AT1G50560.1 22.593 270 191 8 182 438 221 485 3.21e-12 68.9
Msa0601700 AT3G20140.1 23.569 297 213 7 149 438 188 477 3.51e-12 68.9
Msa0601700 AT1G33720.2 28.261 184 124 4 259 440 193 370 3.54e-12 68.6
Msa0601700 AT2G42250.1 29.245 212 133 6 240 437 274 482 4.04e-12 68.6
Msa0601700 AT5G45340.2 28.947 228 143 7 210 432 219 432 4.60e-12 68.2
Msa0601700 AT5G24960.1 26.407 231 151 3 210 436 250 465 5.18e-12 68.2
Msa0601700 AT4G22690.1 21.789 436 288 13 18 433 114 516 5.60e-12 68.2
Msa0601700 AT1G74540.1 26.609 233 165 4 227 457 251 479 7.11e-12 67.8
Msa0601700 AT1G74550.1 26.961 204 143 4 257 457 273 473 7.34e-12 67.8
Msa0601700 AT3G26330.1 20.627 383 256 8 95 452 126 485 8.32e-12 67.8
Msa0601700 AT3G53300.1 23.483 379 245 10 72 433 113 463 1.36e-11 67.0
Msa0601700 AT1G13090.2 21.409 369 256 9 76 433 117 462 1.73e-11 66.6
Msa0601700 AT4G22710.1 21.789 436 288 13 18 433 83 485 1.78e-11 66.6
Msa0601700 AT3G61880.1 26.009 223 150 9 220 433 280 496 1.89e-11 66.6
Msa0601700 AT1G13080.2 27.586 174 125 1 260 433 176 348 2.06e-11 65.9
Msa0601700 AT5G05260.2 25.000 240 168 7 203 432 251 488 2.12e-11 66.2
Msa0601700 AT3G61880.2 26.009 223 150 9 220 433 280 496 2.28e-11 66.2
Msa0601700 AT1G13080.1 25.000 200 141 2 242 433 268 466 2.77e-11 65.9
Msa0601700 AT4G37410.1 23.704 270 188 9 203 465 230 488 5.76e-11 65.1
Msa0601700 AT4G12320.1 22.581 248 179 6 200 436 236 481 9.38e-11 64.3

Find 84 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAAATGCATTATCTTAA+TGG 0.182669 4_2:+44627459 Msa0601700:CDS
GGATACTTAAAAGGACATTT+TGG 0.225017 4_2:-44627693 None:intergenic
ACAATTCATGTTCATGTCTT+AGG 0.226169 4_2:+44626583 Msa0601700:CDS
ACAATCCTTGGTGATCTTCT+TGG 0.252655 4_2:+44626691 Msa0601700:CDS
TAACGGCGTCACCGTTAATA+TGG 0.274716 4_2:+44627085 Msa0601700:CDS
AGCGGGGTCGAGGGTTTGTT+TGG 0.284201 4_2:+44627725 Msa0601700:CDS
CATTTGGGGACCCGATTGTT+TGG 0.298506 4_2:+44627629 Msa0601700:CDS
AGTAAAACGGTTTGATGTTC+GGG 0.302804 4_2:+44627794 Msa0601700:CDS
CAAAGACGAGAAATTGAAAA+TGG 0.306869 4_2:+44627198 Msa0601700:CDS
CTCGTTTAGAGGTGGTTTGC+CGG 0.310479 4_2:+44627863 Msa0601700:CDS
TTCAGCTCAACGAGCATTAA+CGG 0.327080 4_2:+44627068 Msa0601700:CDS
CGTTTCATCTTCCATATTAA+CGG 0.330602 4_2:-44627096 None:intergenic
TTCTGAGGTATTGTCTGCTT+TGG 0.332887 4_2:-44626899 None:intergenic
GGGTCGGATGGAGAACATTT+GGG 0.338668 4_2:+44627614 Msa0601700:CDS
AACATTTGTAAATTCTCGTT+TGG 0.348101 4_2:+44626970 Msa0601700:CDS
CGGTTTGATGTTCGGGTTGT+TGG 0.351401 4_2:+44627801 Msa0601700:CDS
TGGGTCGGATGGAGAACATT+TGG 0.366720 4_2:+44627613 Msa0601700:CDS
GGTTTAACTGCCTCGTTTAG+AGG 0.374139 4_2:+44627852 Msa0601700:CDS
ATGAAACGTTTCTTCAACAT+TGG 0.376330 4_2:+44627111 Msa0601700:CDS
ACCGTTGCTTCCGCGTTAAC+CGG 0.376488 4_2:+44627330 Msa0601700:CDS
TAGTAAAACGGTTTGATGTT+CGG 0.378116 4_2:+44627793 Msa0601700:CDS
GTTCTTTCATAAATCTTAAC+CGG 0.383823 4_2:-44627882 None:intergenic
AATTAATATAGTAAACGATT+TGG 0.386462 4_2:+44627158 Msa0601700:CDS
GGGTTTAAATTCCAAACAAT+CGG 0.391428 4_2:-44627640 None:intergenic
TCTAAACGAGGCAGTTAAAC+CGG 0.397860 4_2:-44627850 None:intergenic
GCAAACTGCGGCTCTTGGTT+CGG 0.401671 4_2:-44627825 None:intergenic
CACTTATCACCCGTATGCTA+TGG 0.403576 4_2:+44627593 Msa0601700:CDS
GCGGGGTCGAGGGTTTGTTT+GGG 0.410361 4_2:+44627726 Msa0601700:CDS
CTTGAGCCGGGTTCATTACT+CGG 0.418598 4_2:-44627413 None:intergenic
AACTTTGAATCAAATTGAAC+CGG 0.419157 4_2:-44627513 None:intergenic
TGATTCAAAGTTTGCTCTTG+AGG 0.427958 4_2:+44627524 Msa0601700:CDS
TGAAACGTTTCTTCAACATT+GGG 0.445209 4_2:+44627112 Msa0601700:CDS
ACCATCCTTCAACCATCTCT+CGG 0.455230 4_2:-44627661 None:intergenic
TAATAAATTCTTAAACCTTG+TGG 0.457155 4_2:+44626522 Msa0601700:CDS
GCATTTGCAAGATTTGAAAC+AGG 0.463179 4_2:-44627024 None:intergenic
TCAACGTTGACGGCCATTCG+TGG 0.471015 4_2:+44626725 Msa0601700:CDS
CGGGTGCAAACTGCGGCTCT+TGG 0.471945 4_2:-44627830 None:intergenic
TCGTTGCTTCATTAGTAAAA+CGG 0.474372 4_2:+44627781 Msa0601700:CDS
AAAGTAGCACACTCTTGAGC+CGG 0.485215 4_2:-44627426 None:intergenic
ACCGGTTAACGCGGAAGCAA+CGG 0.488090 4_2:-44627331 None:intergenic
AAACTTTCTTAACCATGAGT+TGG 0.488575 4_2:+44626497 None:intergenic
GTCGAGGGTTTGTTTGGGAA+AGG 0.490821 4_2:+44627731 Msa0601700:CDS
TAAACCCGAGAGATGGTTGA+AGG 0.494831 4_2:+44627656 Msa0601700:CDS
CTTCTTAAAGAATCACCAAC+AGG 0.496377 4_2:+44626559 Msa0601700:CDS
CAAGAGCCGCAGTTTGCACC+CGG 0.497130 4_2:+44627831 Msa0601700:CDS
CTTGGTGATCTTCTTGGCCG+TGG 0.498898 4_2:+44626697 Msa0601700:CDS
GGTTTAAATTCCAAACAATC+GGG 0.504893 4_2:-44627639 None:intergenic
AATTTCAACAACTACCCAAA+AGG 0.513160 4_2:+44626655 Msa0601700:CDS
TCCATCCGACCCATAGCATA+CGG 0.514140 4_2:-44627603 None:intergenic
CCATCCTTCAACCATCTCTC+GGG 0.515331 4_2:-44627660 None:intergenic
TTCGTTGAAACTTCCACGAA+TGG 0.522124 4_2:-44626738 None:intergenic
CGTGGTATCTTCAACGTTGA+CGG 0.524820 4_2:+44626715 Msa0601700:CDS
CCCGTATGCTATGGGTCGGA+TGG 0.528361 4_2:+44627602 Msa0601700:CDS
ACTTATCACCCGTATGCTAT+GGG 0.533505 4_2:+44627594 Msa0601700:CDS
AGATTTGAAACAGGAAGTGA+TGG 0.556552 4_2:-44627015 None:intergenic
AAGTAGCACACTCTTGAGCC+GGG 0.567353 4_2:-44627425 None:intergenic
TCGGCAACAGAAGCTATAAG+AGG 0.572241 4_2:-44626847 None:intergenic
TGGAATTTAAACCCGAGAGA+TGG 0.572527 4_2:+44627649 Msa0601700:CDS
ATTGTCGAAGAACCCGAAAG+TGG 0.578643 4_2:+44627365 Msa0601700:CDS
CTAAACGAGGCAGTTAAACC+GGG 0.580288 4_2:-44627849 None:intergenic
TTAACTGCCTCGTTTAGAGG+TGG 0.582614 4_2:+44627855 Msa0601700:CDS
TTTGAATCAAATTGAACCGG+TGG 0.584985 4_2:-44627510 None:intergenic
GAATTTATTAGACCAACTCA+TGG 0.591820 4_2:-44626509 None:intergenic
CCATCCGACCCATAGCATAC+GGG 0.592232 4_2:-44627602 None:intergenic
CCCGAGAGATGGTTGAAGGA+TGG 0.594806 4_2:+44627660 Msa0601700:CDS
GGTCGGATGGAGAACATTTG+GGG 0.602556 4_2:+44627615 Msa0601700:CDS
AGTGATTCGTTCCTACGCGA+TGG 0.606958 4_2:+44626789 Msa0601700:CDS
ATCACCCGTATGCTATGGGT+CGG 0.609704 4_2:+44627598 Msa0601700:CDS
GAGGATGACGTGTTACCTGA+TGG 0.618078 4_2:+44627543 Msa0601700:CDS
TGAACATGAATTGTTCCTGT+TGG 0.624066 4_2:-44626574 None:intergenic
GTCGAAAAGAACGTCTTCTG+AGG 0.632820 4_2:-44626914 None:intergenic
AGTGATGGAACAAGACAACA+TGG 0.634539 4_2:-44627000 None:intergenic
GTTAAACCGGGTGCAAACTG+CGG 0.639076 4_2:-44627837 None:intergenic
GTCGAAGAACCCGAAAGTGG+AGG 0.642090 4_2:+44627368 Msa0601700:CDS
AACCTCAAATCCAGAAAACG+TGG 0.643222 4_2:+44626615 Msa0601700:CDS
AAAATGGCATCTCTTGAACT+CGG 0.657903 4_2:+44626760 Msa0601700:CDS
CGGCAAACCACCTCTAAACG+AGG 0.661985 4_2:-44627862 None:intergenic
TCATTGAAGAAATCAAAACA+AGG 0.695195 4_2:+44626818 Msa0601700:CDS
AATGACAAGTTCCATCGCGT+AGG 0.696194 4_2:-44626800 None:intergenic
GTTAGACCGAGTAATGAACC+CGG 0.697136 4_2:+44627407 Msa0601700:CDS
CGTCAACGTTGAAGATACCA+CGG 0.722752 4_2:-44626714 None:intergenic
GATGTGTGTAGTAATCCACA+AGG 0.726385 4_2:-44626537 None:intergenic
CACGGCCAAGAAGATCACCA+AGG 0.761755 4_2:-44626696 None:intergenic
GTGATGGAACAAGACAACAT+GGG 0.769475 4_2:-44626999 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATATAGTAAACGATT+TGG + chr4_2:44627158-44627177 Msa0601700:CDS 15.0%
!! AATTAATATAGTAAACGATT+TGG + chr4_2:44627158-44627177 Msa0601700:CDS 15.0%
!! TAATAAATTCTTAAACCTTG+TGG + chr4_2:44626522-44626541 Msa0601700:CDS 20.0%
!! CGACAATAAAATAAAAAAAC+CGG - chr4_2:44627352-44627371 None:intergenic 20.0%
!!! TTTTTTATAAAAGTTCCATC+AGG - chr4_2:44627561-44627580 None:intergenic 20.0%
!!! TGATGGAACTTTTATAAAAA+AGG + chr4_2:44627560-44627579 Msa0601700:CDS 20.0%
!!! GATGGAACTTTTATAAAAAA+GGG + chr4_2:44627561-44627580 Msa0601700:CDS 20.0%
!!! ATGGAACTTTTATAAAAAAG+GGG + chr4_2:44627562-44627581 Msa0601700:CDS 20.0%
!! TAATAAATTCTTAAACCTTG+TGG + chr4_2:44626522-44626541 Msa0601700:CDS 20.0%
!! CGACAATAAAATAAAAAAAC+CGG - chr4_2:44627352-44627371 None:intergenic 20.0%
!!! TTTTTTATAAAAGTTCCATC+AGG - chr4_2:44627561-44627580 None:intergenic 20.0%
!!! TGATGGAACTTTTATAAAAA+AGG + chr4_2:44627560-44627579 Msa0601700:CDS 20.0%
!!! GATGGAACTTTTATAAAAAA+GGG + chr4_2:44627561-44627580 Msa0601700:CDS 20.0%
!!! ATGGAACTTTTATAAAAAAG+GGG + chr4_2:44627562-44627581 Msa0601700:CDS 20.0%
!! TAGAAAACTGTTTTCCTTTT+GGG - chr4_2:44626672-44626691 None:intergenic 25.0%
! TCATTGAAGAAATCAAAACA+AGG + chr4_2:44626818-44626837 Msa0601700:CDS 25.0%
! AACATTTGTAAATTCTCGTT+TGG + chr4_2:44626970-44626989 Msa0601700:CDS 25.0%
! AACTTTGAATCAAATTGAAC+CGG - chr4_2:44627516-44627535 None:intergenic 25.0%
!!! AAAATGTCCTTTTAAGTATC+CGG + chr4_2:44627695-44627714 Msa0601700:CDS 25.0%
! GTTCTTTCATAAATCTTAAC+CGG - chr4_2:44627885-44627904 None:intergenic 25.0%
!! TAGAAAACTGTTTTCCTTTT+GGG - chr4_2:44626672-44626691 None:intergenic 25.0%
! TCATTGAAGAAATCAAAACA+AGG + chr4_2:44626818-44626837 Msa0601700:CDS 25.0%
! AACATTTGTAAATTCTCGTT+TGG + chr4_2:44626970-44626989 Msa0601700:CDS 25.0%
! AACTTTGAATCAAATTGAAC+CGG - chr4_2:44627516-44627535 None:intergenic 25.0%
!!! AAAATGTCCTTTTAAGTATC+CGG + chr4_2:44627695-44627714 Msa0601700:CDS 25.0%
! GTTCTTTCATAAATCTTAAC+CGG - chr4_2:44627885-44627904 None:intergenic 25.0%
ACAATTCATGTTCATGTCTT+AGG + chr4_2:44626583-44626602 Msa0601700:CDS 30.0%
AATTTCAACAACTACCCAAA+AGG + chr4_2:44626655-44626674 Msa0601700:CDS 30.0%
! GTAGAAAACTGTTTTCCTTT+TGG - chr4_2:44626673-44626692 None:intergenic 30.0%
! AAACAGTTTTCTACAATCCT+TGG + chr4_2:44626679-44626698 Msa0601700:CDS 30.0%
CGTTTCATCTTCCATATTAA+CGG - chr4_2:44627099-44627118 None:intergenic 30.0%
ATGAAACGTTTCTTCAACAT+TGG + chr4_2:44627111-44627130 Msa0601700:CDS 30.0%
TGAAACGTTTCTTCAACATT+GGG + chr4_2:44627112-44627131 Msa0601700:CDS 30.0%
CAAAGACGAGAAATTGAAAA+TGG + chr4_2:44627198-44627217 Msa0601700:CDS 30.0%
! AGATCTTCTATCTCGTTTTA+TGG + chr4_2:44627236-44627255 Msa0601700:CDS 30.0%
! GATCTTCTATCTCGTTTTAT+GGG + chr4_2:44627237-44627256 Msa0601700:CDS 30.0%
AATAAAAAAACCGGTTAACG+CGG - chr4_2:44627343-44627362 None:intergenic 30.0%
CGTGAAATGCATTATCTTAA+TGG + chr4_2:44627459-44627478 Msa0601700:CDS 30.0%
! CTTTTATAAAAAAGGGGAGT+CGG + chr4_2:44627568-44627587 Msa0601700:CDS 30.0%
! TTTTATAAAAAAGGGGAGTC+GGG + chr4_2:44627569-44627588 Msa0601700:CDS 30.0%
GGTTTAAATTCCAAACAATC+GGG - chr4_2:44627642-44627661 None:intergenic 30.0%
GGGTTTAAATTCCAAACAAT+CGG - chr4_2:44627643-44627662 None:intergenic 30.0%
! GGATACTTAAAAGGACATTT+TGG - chr4_2:44627696-44627715 None:intergenic 30.0%
TGAAAAACCGGATACTTAAA+AGG - chr4_2:44627705-44627724 None:intergenic 30.0%
TCGTTGCTTCATTAGTAAAA+CGG + chr4_2:44627781-44627800 Msa0601700:CDS 30.0%
TAGTAAAACGGTTTGATGTT+CGG + chr4_2:44627793-44627812 Msa0601700:CDS 30.0%
ACAATTCATGTTCATGTCTT+AGG + chr4_2:44626583-44626602 Msa0601700:CDS 30.0%
AATTTCAACAACTACCCAAA+AGG + chr4_2:44626655-44626674 Msa0601700:CDS 30.0%
! GTAGAAAACTGTTTTCCTTT+TGG - chr4_2:44626673-44626692 None:intergenic 30.0%
! AAACAGTTTTCTACAATCCT+TGG + chr4_2:44626679-44626698 Msa0601700:CDS 30.0%
CGTTTCATCTTCCATATTAA+CGG - chr4_2:44627099-44627118 None:intergenic 30.0%
ATGAAACGTTTCTTCAACAT+TGG + chr4_2:44627111-44627130 Msa0601700:CDS 30.0%
TGAAACGTTTCTTCAACATT+GGG + chr4_2:44627112-44627131 Msa0601700:CDS 30.0%
CAAAGACGAGAAATTGAAAA+TGG + chr4_2:44627198-44627217 Msa0601700:CDS 30.0%
! AGATCTTCTATCTCGTTTTA+TGG + chr4_2:44627236-44627255 Msa0601700:CDS 30.0%
! GATCTTCTATCTCGTTTTAT+GGG + chr4_2:44627237-44627256 Msa0601700:CDS 30.0%
AATAAAAAAACCGGTTAACG+CGG - chr4_2:44627343-44627362 None:intergenic 30.0%
CGTGAAATGCATTATCTTAA+TGG + chr4_2:44627459-44627478 Msa0601700:CDS 30.0%
! CTTTTATAAAAAAGGGGAGT+CGG + chr4_2:44627568-44627587 Msa0601700:CDS 30.0%
! TTTTATAAAAAAGGGGAGTC+GGG + chr4_2:44627569-44627588 Msa0601700:CDS 30.0%
GGTTTAAATTCCAAACAATC+GGG - chr4_2:44627642-44627661 None:intergenic 30.0%
GGGTTTAAATTCCAAACAAT+CGG - chr4_2:44627643-44627662 None:intergenic 30.0%
! GGATACTTAAAAGGACATTT+TGG - chr4_2:44627696-44627715 None:intergenic 30.0%
TGAAAAACCGGATACTTAAA+AGG - chr4_2:44627705-44627724 None:intergenic 30.0%
TCGTTGCTTCATTAGTAAAA+CGG + chr4_2:44627781-44627800 Msa0601700:CDS 30.0%
TAGTAAAACGGTTTGATGTT+CGG + chr4_2:44627793-44627812 Msa0601700:CDS 30.0%
CTTCTTAAAGAATCACCAAC+AGG + chr4_2:44626559-44626578 Msa0601700:CDS 35.0%
TGAACATGAATTGTTCCTGT+TGG - chr4_2:44626577-44626596 None:intergenic 35.0%
! AGTATATACTCCACGTTTTC+TGG - chr4_2:44626628-44626647 None:intergenic 35.0%
GTGGAAGTTTCAACGAAAAA+TGG + chr4_2:44626744-44626763 Msa0601700:CDS 35.0%
AAAATGGCATCTCTTGAACT+CGG + chr4_2:44626760-44626779 Msa0601700:CDS 35.0%
! AGATTTGAAACAGGAAGTGA+TGG - chr4_2:44627018-44627037 None:intergenic 35.0%
! GCATTTGCAAGATTTGAAAC+AGG - chr4_2:44627027-44627046 None:intergenic 35.0%
!!! TGTCGTTAGTTTTCTGTTAG+CGG + chr4_2:44627299-44627318 Msa0601700:CDS 35.0%
!!! GAATTTTTTCCTCCACTTTC+GGG - chr4_2:44627380-44627399 None:intergenic 35.0%
!!! CGAATTTTTTCCTCCACTTT+CGG - chr4_2:44627381-44627400 None:intergenic 35.0%
CGAAAGTGGAGGAAAAAATT+CGG + chr4_2:44627379-44627398 Msa0601700:CDS 35.0%
GAAAGTGGAGGAAAAAATTC+GGG + chr4_2:44627380-44627399 Msa0601700:CDS 35.0%
TTTGAATCAAATTGAACCGG+TGG - chr4_2:44627513-44627532 None:intergenic 35.0%
! TGATTCAAAGTTTGCTCTTG+AGG + chr4_2:44627524-44627543 Msa0601700:CDS 35.0%
!!! TAAGTATCCGGTTTTTCAAG+CGG + chr4_2:44627707-44627726 Msa0601700:CDS 35.0%
AGTAAAACGGTTTGATGTTC+GGG + chr4_2:44627794-44627813 Msa0601700:CDS 35.0%
CTTCTTAAAGAATCACCAAC+AGG + chr4_2:44626559-44626578 Msa0601700:CDS 35.0%
TGAACATGAATTGTTCCTGT+TGG - chr4_2:44626577-44626596 None:intergenic 35.0%
! AGTATATACTCCACGTTTTC+TGG - chr4_2:44626628-44626647 None:intergenic 35.0%
GTGGAAGTTTCAACGAAAAA+TGG + chr4_2:44626744-44626763 Msa0601700:CDS 35.0%
AAAATGGCATCTCTTGAACT+CGG + chr4_2:44626760-44626779 Msa0601700:CDS 35.0%
! AGATTTGAAACAGGAAGTGA+TGG - chr4_2:44627018-44627037 None:intergenic 35.0%
! GCATTTGCAAGATTTGAAAC+AGG - chr4_2:44627027-44627046 None:intergenic 35.0%
!!! TGTCGTTAGTTTTCTGTTAG+CGG + chr4_2:44627299-44627318 Msa0601700:CDS 35.0%
!!! GAATTTTTTCCTCCACTTTC+GGG - chr4_2:44627380-44627399 None:intergenic 35.0%
!!! CGAATTTTTTCCTCCACTTT+CGG - chr4_2:44627381-44627400 None:intergenic 35.0%
CGAAAGTGGAGGAAAAAATT+CGG + chr4_2:44627379-44627398 Msa0601700:CDS 35.0%
GAAAGTGGAGGAAAAAATTC+GGG + chr4_2:44627380-44627399 Msa0601700:CDS 35.0%
TTTGAATCAAATTGAACCGG+TGG - chr4_2:44627513-44627532 None:intergenic 35.0%
! TGATTCAAAGTTTGCTCTTG+AGG + chr4_2:44627524-44627543 Msa0601700:CDS 35.0%
!!! TAAGTATCCGGTTTTTCAAG+CGG + chr4_2:44627707-44627726 Msa0601700:CDS 35.0%
AGTAAAACGGTTTGATGTTC+GGG + chr4_2:44627794-44627813 Msa0601700:CDS 35.0%
GATGTGTGTAGTAATCCACA+AGG - chr4_2:44626540-44626559 None:intergenic 40.0%
AACCTCAAATCCAGAAAACG+TGG + chr4_2:44626615-44626634 Msa0601700:CDS 40.0%
! ACAATCCTTGGTGATCTTCT+TGG + chr4_2:44626691-44626710 Msa0601700:CDS 40.0%
TTCGTTGAAACTTCCACGAA+TGG - chr4_2:44626741-44626760 None:intergenic 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG - chr4_2:44626902-44626921 None:intergenic 40.0%
! GTGATGGAACAAGACAACAT+GGG - chr4_2:44627002-44627021 None:intergenic 40.0%
! AGTGATGGAACAAGACAACA+TGG - chr4_2:44627003-44627022 None:intergenic 40.0%
TTCAGCTCAACGAGCATTAA+CGG + chr4_2:44627068-44627087 Msa0601700:CDS 40.0%
!!! GTCGTTAGTTTTCTGTTAGC+GGG + chr4_2:44627300-44627319 Msa0601700:CDS 40.0%
!! GAGTATGAGACTTTTTCCAC+CGG + chr4_2:44627494-44627513 Msa0601700:CDS 40.0%
ACTTATCACCCGTATGCTAT+GGG + chr4_2:44627594-44627613 Msa0601700:CDS 40.0%
TGGAATTTAAACCCGAGAGA+TGG + chr4_2:44627649-44627668 Msa0601700:CDS 40.0%
!!! AAGTATCCGGTTTTTCAAGC+GGG + chr4_2:44627708-44627727 Msa0601700:CDS 40.0%
TCTAAACGAGGCAGTTAAAC+CGG - chr4_2:44627853-44627872 None:intergenic 40.0%
GATGTGTGTAGTAATCCACA+AGG - chr4_2:44626540-44626559 None:intergenic 40.0%
AACCTCAAATCCAGAAAACG+TGG + chr4_2:44626615-44626634 Msa0601700:CDS 40.0%
! ACAATCCTTGGTGATCTTCT+TGG + chr4_2:44626691-44626710 Msa0601700:CDS 40.0%
TTCGTTGAAACTTCCACGAA+TGG - chr4_2:44626741-44626760 None:intergenic 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG - chr4_2:44626902-44626921 None:intergenic 40.0%
! GTGATGGAACAAGACAACAT+GGG - chr4_2:44627002-44627021 None:intergenic 40.0%
! AGTGATGGAACAAGACAACA+TGG - chr4_2:44627003-44627022 None:intergenic 40.0%
TTCAGCTCAACGAGCATTAA+CGG + chr4_2:44627068-44627087 Msa0601700:CDS 40.0%
!!! GTCGTTAGTTTTCTGTTAGC+GGG + chr4_2:44627300-44627319 Msa0601700:CDS 40.0%
!! GAGTATGAGACTTTTTCCAC+CGG + chr4_2:44627494-44627513 Msa0601700:CDS 40.0%
ACTTATCACCCGTATGCTAT+GGG + chr4_2:44627594-44627613 Msa0601700:CDS 40.0%
TGGAATTTAAACCCGAGAGA+TGG + chr4_2:44627649-44627668 Msa0601700:CDS 40.0%
!!! AAGTATCCGGTTTTTCAAGC+GGG + chr4_2:44627708-44627727 Msa0601700:CDS 40.0%
TCTAAACGAGGCAGTTAAAC+CGG - chr4_2:44627853-44627872 None:intergenic 40.0%
! CTCCACGTTTTCTGGATTTG+AGG - chr4_2:44626620-44626639 None:intergenic 45.0%
CGTCAACGTTGAAGATACCA+CGG - chr4_2:44626717-44626736 None:intergenic 45.0%
CGTGGTATCTTCAACGTTGA+CGG + chr4_2:44626715-44626734 Msa0601700:CDS 45.0%
AATGACAAGTTCCATCGCGT+AGG - chr4_2:44626803-44626822 None:intergenic 45.0%
TCGGCAACAGAAGCTATAAG+AGG - chr4_2:44626850-44626869 None:intergenic 45.0%
!!! AGCACTCGCGGTTTTTTTCT+CGG - chr4_2:44626869-44626888 None:intergenic 45.0%
GTCGAAAAGAACGTCTTCTG+AGG - chr4_2:44626917-44626936 None:intergenic 45.0%
TAACGGCGTCACCGTTAATA+TGG + chr4_2:44627085-44627104 Msa0601700:CDS 45.0%
ATTGTCGAAGAACCCGAAAG+TGG + chr4_2:44627365-44627384 Msa0601700:CDS 45.0%
GTTAGACCGAGTAATGAACC+CGG + chr4_2:44627407-44627426 Msa0601700:CDS 45.0%
AAAGTAGCACACTCTTGAGC+CGG - chr4_2:44627429-44627448 None:intergenic 45.0%
CACTTATCACCCGTATGCTA+TGG + chr4_2:44627593-44627612 Msa0601700:CDS 45.0%
TAAACCCGAGAGATGGTTGA+AGG + chr4_2:44627656-44627675 Msa0601700:CDS 45.0%
ACCATCCTTCAACCATCTCT+CGG - chr4_2:44627664-44627683 None:intergenic 45.0%
!!! AGTATCCGGTTTTTCAAGCG+GGG + chr4_2:44627709-44627728 Msa0601700:CDS 45.0%
CTAAACGAGGCAGTTAAACC+GGG - chr4_2:44627852-44627871 None:intergenic 45.0%
GGTTTAACTGCCTCGTTTAG+AGG + chr4_2:44627852-44627871 Msa0601700:CDS 45.0%
TTAACTGCCTCGTTTAGAGG+TGG + chr4_2:44627855-44627874 Msa0601700:CDS 45.0%
! CTCCACGTTTTCTGGATTTG+AGG - chr4_2:44626620-44626639 None:intergenic 45.0%
CGTCAACGTTGAAGATACCA+CGG - chr4_2:44626717-44626736 None:intergenic 45.0%
CGTGGTATCTTCAACGTTGA+CGG + chr4_2:44626715-44626734 Msa0601700:CDS 45.0%
AATGACAAGTTCCATCGCGT+AGG - chr4_2:44626803-44626822 None:intergenic 45.0%
TCGGCAACAGAAGCTATAAG+AGG - chr4_2:44626850-44626869 None:intergenic 45.0%
!!! AGCACTCGCGGTTTTTTTCT+CGG - chr4_2:44626869-44626888 None:intergenic 45.0%
GTCGAAAAGAACGTCTTCTG+AGG - chr4_2:44626917-44626936 None:intergenic 45.0%
TAACGGCGTCACCGTTAATA+TGG + chr4_2:44627085-44627104 Msa0601700:CDS 45.0%
ATTGTCGAAGAACCCGAAAG+TGG + chr4_2:44627365-44627384 Msa0601700:CDS 45.0%
GTTAGACCGAGTAATGAACC+CGG + chr4_2:44627407-44627426 Msa0601700:CDS 45.0%
AAAGTAGCACACTCTTGAGC+CGG - chr4_2:44627429-44627448 None:intergenic 45.0%
CACTTATCACCCGTATGCTA+TGG + chr4_2:44627593-44627612 Msa0601700:CDS 45.0%
TAAACCCGAGAGATGGTTGA+AGG + chr4_2:44627656-44627675 Msa0601700:CDS 45.0%
ACCATCCTTCAACCATCTCT+CGG - chr4_2:44627664-44627683 None:intergenic 45.0%
!!! AGTATCCGGTTTTTCAAGCG+GGG + chr4_2:44627709-44627728 Msa0601700:CDS 45.0%
CTAAACGAGGCAGTTAAACC+GGG - chr4_2:44627852-44627871 None:intergenic 45.0%
GGTTTAACTGCCTCGTTTAG+AGG + chr4_2:44627852-44627871 Msa0601700:CDS 45.0%
TTAACTGCCTCGTTTAGAGG+TGG + chr4_2:44627855-44627874 Msa0601700:CDS 45.0%
AGTGATTCGTTCCTACGCGA+TGG + chr4_2:44626789-44626808 Msa0601700:CDS 50.0%
! GGATTTTGTGTGAGCACTCG+CGG - chr4_2:44626881-44626900 None:intergenic 50.0%
CTTGAGCCGGGTTCATTACT+CGG - chr4_2:44627416-44627435 None:intergenic 50.0%
AAGTAGCACACTCTTGAGCC+GGG - chr4_2:44627428-44627447 None:intergenic 50.0%
GAGGATGACGTGTTACCTGA+TGG + chr4_2:44627543-44627562 Msa0601700:CDS 50.0%
ATCACCCGTATGCTATGGGT+CGG + chr4_2:44627598-44627617 Msa0601700:CDS 50.0%
TCCATCCGACCCATAGCATA+CGG - chr4_2:44627606-44627625 None:intergenic 50.0%
TGGGTCGGATGGAGAACATT+TGG + chr4_2:44627613-44627632 Msa0601700:CDS 50.0%
GGGTCGGATGGAGAACATTT+GGG + chr4_2:44627614-44627633 Msa0601700:CDS 50.0%
GGTCGGATGGAGAACATTTG+GGG + chr4_2:44627615-44627634 Msa0601700:CDS 50.0%
CATTTGGGGACCCGATTGTT+TGG + chr4_2:44627629-44627648 Msa0601700:CDS 50.0%
CCATCCTTCAACCATCTCTC+GGG - chr4_2:44627663-44627682 None:intergenic 50.0%
! GTCGAGGGTTTGTTTGGGAA+AGG + chr4_2:44627731-44627750 Msa0601700:CDS 50.0%
!! CGGTTTGATGTTCGGGTTGT+TGG + chr4_2:44627801-44627820 Msa0601700:CDS 50.0%
GTTAAACCGGGTGCAAACTG+CGG - chr4_2:44627840-44627859 None:intergenic 50.0%
! CTCGTTTAGAGGTGGTTTGC+CGG + chr4_2:44627863-44627882 Msa0601700:CDS 50.0%
AGTGATTCGTTCCTACGCGA+TGG + chr4_2:44626789-44626808 Msa0601700:CDS 50.0%
! GGATTTTGTGTGAGCACTCG+CGG - chr4_2:44626881-44626900 None:intergenic 50.0%
CTTGAGCCGGGTTCATTACT+CGG - chr4_2:44627416-44627435 None:intergenic 50.0%
AAGTAGCACACTCTTGAGCC+GGG - chr4_2:44627428-44627447 None:intergenic 50.0%
GAGGATGACGTGTTACCTGA+TGG + chr4_2:44627543-44627562 Msa0601700:CDS 50.0%
ATCACCCGTATGCTATGGGT+CGG + chr4_2:44627598-44627617 Msa0601700:CDS 50.0%
TCCATCCGACCCATAGCATA+CGG - chr4_2:44627606-44627625 None:intergenic 50.0%
TGGGTCGGATGGAGAACATT+TGG + chr4_2:44627613-44627632 Msa0601700:CDS 50.0%
GGGTCGGATGGAGAACATTT+GGG + chr4_2:44627614-44627633 Msa0601700:CDS 50.0%
GGTCGGATGGAGAACATTTG+GGG + chr4_2:44627615-44627634 Msa0601700:CDS 50.0%
CATTTGGGGACCCGATTGTT+TGG + chr4_2:44627629-44627648 Msa0601700:CDS 50.0%
CCATCCTTCAACCATCTCTC+GGG - chr4_2:44627663-44627682 None:intergenic 50.0%
! GTCGAGGGTTTGTTTGGGAA+AGG + chr4_2:44627731-44627750 Msa0601700:CDS 50.0%
!! CGGTTTGATGTTCGGGTTGT+TGG + chr4_2:44627801-44627820 Msa0601700:CDS 50.0%
GTTAAACCGGGTGCAAACTG+CGG - chr4_2:44627840-44627859 None:intergenic 50.0%
! CTCGTTTAGAGGTGGTTTGC+CGG + chr4_2:44627863-44627882 Msa0601700:CDS 50.0%
CACGGCCAAGAAGATCACCA+AGG - chr4_2:44626699-44626718 None:intergenic 55.0%
! CTTGGTGATCTTCTTGGCCG+TGG + chr4_2:44626697-44626716 Msa0601700:CDS 55.0%
TCAACGTTGACGGCCATTCG+TGG + chr4_2:44626725-44626744 Msa0601700:CDS 55.0%
ACCGTTGCTTCCGCGTTAAC+CGG + chr4_2:44627330-44627349 Msa0601700:CDS 55.0%
ACCGGTTAACGCGGAAGCAA+CGG - chr4_2:44627334-44627353 None:intergenic 55.0%
GTCGAAGAACCCGAAAGTGG+AGG + chr4_2:44627368-44627387 Msa0601700:CDS 55.0%
CCATCCGACCCATAGCATAC+GGG - chr4_2:44627605-44627624 None:intergenic 55.0%
CCCGAGAGATGGTTGAAGGA+TGG + chr4_2:44627660-44627679 Msa0601700:CDS 55.0%
CTCGACCCCGCTTGAAAAAC+CGG - chr4_2:44627717-44627736 None:intergenic 55.0%
!!! GGTTTTTCAAGCGGGGTCGA+GGG + chr4_2:44627716-44627735 Msa0601700:CDS 55.0%
GCAAACTGCGGCTCTTGGTT+CGG - chr4_2:44627828-44627847 None:intergenic 55.0%
CGGCAAACCACCTCTAAACG+AGG - chr4_2:44627865-44627884 None:intergenic 55.0%
CACGGCCAAGAAGATCACCA+AGG - chr4_2:44626699-44626718 None:intergenic 55.0%
! CTTGGTGATCTTCTTGGCCG+TGG + chr4_2:44626697-44626716 Msa0601700:CDS 55.0%
TCAACGTTGACGGCCATTCG+TGG + chr4_2:44626725-44626744 Msa0601700:CDS 55.0%
ACCGTTGCTTCCGCGTTAAC+CGG + chr4_2:44627330-44627349 Msa0601700:CDS 55.0%
ACCGGTTAACGCGGAAGCAA+CGG - chr4_2:44627334-44627353 None:intergenic 55.0%
GTCGAAGAACCCGAAAGTGG+AGG + chr4_2:44627368-44627387 Msa0601700:CDS 55.0%
CCATCCGACCCATAGCATAC+GGG - chr4_2:44627605-44627624 None:intergenic 55.0%
CCCGAGAGATGGTTGAAGGA+TGG + chr4_2:44627660-44627679 Msa0601700:CDS 55.0%
CTCGACCCCGCTTGAAAAAC+CGG - chr4_2:44627717-44627736 None:intergenic 55.0%
!!! GGTTTTTCAAGCGGGGTCGA+GGG + chr4_2:44627716-44627735 Msa0601700:CDS 55.0%
GCAAACTGCGGCTCTTGGTT+CGG - chr4_2:44627828-44627847 None:intergenic 55.0%
CGGCAAACCACCTCTAAACG+AGG - chr4_2:44627865-44627884 None:intergenic 55.0%
CCCGTATGCTATGGGTCGGA+TGG + chr4_2:44627602-44627621 Msa0601700:CDS 60.0%
!!! CGGTTTTTCAAGCGGGGTCG+AGG + chr4_2:44627715-44627734 Msa0601700:CDS 60.0%
! AGCGGGGTCGAGGGTTTGTT+TGG + chr4_2:44627725-44627744 Msa0601700:CDS 60.0%
! GCGGGGTCGAGGGTTTGTTT+GGG + chr4_2:44627726-44627745 Msa0601700:CDS 60.0%
CAAGAGCCGCAGTTTGCACC+CGG + chr4_2:44627831-44627850 Msa0601700:CDS 60.0%
CCCGTATGCTATGGGTCGGA+TGG + chr4_2:44627602-44627621 Msa0601700:CDS 60.0%
!!! CGGTTTTTCAAGCGGGGTCG+AGG + chr4_2:44627715-44627734 Msa0601700:CDS 60.0%
! AGCGGGGTCGAGGGTTTGTT+TGG + chr4_2:44627725-44627744 Msa0601700:CDS 60.0%
! GCGGGGTCGAGGGTTTGTTT+GGG + chr4_2:44627726-44627745 Msa0601700:CDS 60.0%
CAAGAGCCGCAGTTTGCACC+CGG + chr4_2:44627831-44627850 Msa0601700:CDS 60.0%
CGGGTGCAAACTGCGGCTCT+TGG - chr4_2:44627833-44627852 None:intergenic 65.0%
CGGGTGCAAACTGCGGCTCT+TGG - chr4_2:44627833-44627852 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 44626511 44627908 44626511 ID=Msa0601700;Name=Msa0601700
chr4_2 mRNA 44626511 44627908 44626511 ID=Msa0601700-mRNA-1;Parent=Msa0601700;Name=Msa0601700-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|465
chr4_2 exon 44626511 44627908 44626511 ID=Msa0601700-mRNA-1:exon:9852;Parent=Msa0601700-mRNA-1
chr4_2 CDS 44626511 44627908 44626511 ID=Msa0601700-mRNA-1:cds;Parent=Msa0601700-mRNA-1
Gene Sequence

>Msa0601700

ATGAGTTGGTCTAATAAATTCTTAAACCTTGTGGATTACTACACACATCTTCTTAAAGAATCACCAACAGGAACAATTCATGTTCATGTCTTAGGTAACACAATAACCTCAAATCCAGAAAACGTGGAGTATATACTCAAAACAAATTTCAACAACTACCCAAAAGGAAAACAGTTTTCTACAATCCTTGGTGATCTTCTTGGCCGTGGTATCTTCAACGTTGACGGCCATTCGTGGAAGTTTCAACGAAAAATGGCATCTCTTGAACTCGGTAGCGTAGTGATTCGTTCCTACGCGATGGAACTTGTCATTGAAGAAATCAAAACAAGGTTGCTTCCTCTTATAGCTTCTGTTGCCGAGAAAAAAACCGCGAGTGCTCACACAAAATCCAAAGCAGACAATACCTCAGAAGACGTTCTTTTCGACATGCAAGACATTCTTAGAAGATTCTCGTTCGACAACATTTGTAAATTCTCGTTTGGATTAGACCCATGTTGTCTTGTTCCATCACTTCCTGTTTCAAATCTTGCAAATGCTTTTGATCTCTCTTCAACACTTTCAGCTCAACGAGCATTAACGGCGTCACCGTTAATATGGAAGATGAAACGTTTCTTCAACATTGGGTCAGAGAAGAAGTTGAAAGAAGCAATTAATATAGTAAACGATTTGGCAAATGAGATGATAAAACAAAGACGAGAAATTGAAAATGGAGTTGACTCACGAAAAGATCTTCTATCTCGTTTTATGGGTGCTTTGAATTCAAATGACGACGAATATTTAAGAGATATTGTCGTTAGTTTTCTGTTAGCGGGTCGTGATACCGTTGCTTCCGCGTTAACCGGTTTTTTTATTTTATTGTCGAAGAACCCGAAAGTGGAGGAAAAAATTCGGGTTGAGTTAGACCGAGTAATGAACCCGGCTCAAGAGTGTGCTACTTTTGAACAAACGCGTGAAATGCATTATCTTAATGGAGCGATTCATGAGAGTATGAGACTTTTTCCACCGGTTCAATTTGATTCAAAGTTTGCTCTTGAGGATGACGTGTTACCTGATGGAACTTTTATAAAAAAGGGGAGTCGGGTCACTTATCACCCGTATGCTATGGGTCGGATGGAGAACATTTGGGGACCCGATTGTTTGGAATTTAAACCCGAGAGATGGTTGAAGGATGGTGTGTTTGTTCCAAAATGTCCTTTTAAGTATCCGGTTTTTCAAGCGGGGTCGAGGGTTTGTTTGGGAAAGGAGTTAGCTATTGTAGAGATGAAATCTGTCGTTGCTTCATTAGTAAAACGGTTTGATGTTCGGGTTGTTGGACCGAACCAAGAGCCGCAGTTTGCACCCGGTTTAACTGCCTCGTTTAGAGGTGGTTTGCCGGTTAAGATTTATGAAAGAACATGA
Protein sequence

>Msa0601700

MSWSNKFLNLVDYYTHLLKESPTGTIHVHVLGNTITSNPENVEYILKTNFNNYPKGKQFSTILGDLLGRGIFNVDGHSWKFQRKMASLELGSVVIRSYAMELVIEEIKTRLLPLIASVAEKKTASAHTKSKADNTSEDVLFDMQDILRRFSFDNICKFSFGLDPCCLVPSLPVSNLANAFDLSSTLSAQRALTASPLIWKMKRFFNIGSEKKLKEAINIVNDLANEMIKQRREIENGVDSRKDLLSRFMGALNSNDDEYLRDIVVSFLLAGRDTVASALTGFFILLSKNPKVEEKIRVELDRVMNPAQECATFEQTREMHYLNGAIHESMRLFPPVQFDSKFALEDDVLPDGTFIKKGSRVTYHPYAMGRMENIWGPDCLEFKPERWLKDGVFVPKCPFKYPVFQAGSRVCLGKELAIVEMKSVVASLVKRFDVRVVGPNQEPQFAPGLTASFRGGLPVKIYERT*