AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545820 MtrunA17_Chr4g0026941 97.634 465 6 1 1 465 81 540 0.0 937
Msa0545820 MtrunA17_Chr2g0321171 65.733 464 139 3 1 464 55 498 0.0 640
Msa0545820 MtrunA17_Chr1g0178971 60.297 471 160 5 2 464 61 512 0.0 582
Msa0545820 MtrunA17_Chr7g0225531 44.770 478 226 9 3 464 56 511 1.63e-140 413
Msa0545820 MtrunA17_Chr7g0260831 44.421 466 225 10 11 464 59 502 1.42e-136 402
Msa0545820 MtrunA17_Chr3g0119681 46.138 479 216 9 10 465 59 518 1.78e-136 403
Msa0545820 MtrunA17_Chr7g0255131 44.989 469 226 8 10 464 58 508 6.87e-135 398
Msa0545820 MtrunA17_Chr7g0260821 43.348 466 230 12 11 464 60 503 1.17e-128 382
Msa0545820 MtrunA17_Chr1g0184461 44.211 475 234 10 1 464 50 504 2.21e-124 371
Msa0545820 MtrunA17_Chr1g0184421 42.766 470 238 9 7 465 56 505 4.12e-122 365
Msa0545820 MtrunA17_Chr4g0038271 41.060 453 229 8 31 464 127 560 5.59e-112 342
Msa0545820 MtrunA17_Chr1g0164321 41.943 453 222 10 35 464 113 547 3.76e-110 337
Msa0545820 MtrunA17_Chr8g0387001 39.819 442 237 6 34 464 82 505 4.52e-106 325
Msa0545820 MtrunA17_Chr8g0348751 39.597 447 236 8 34 464 82 510 7.93e-104 320
Msa0545820 MtrunA17_Chr3g0104351 39.421 449 231 7 34 464 91 516 2.17e-102 315
Msa0545820 MtrunA17_Chr5g0429651 41.163 447 224 8 34 464 85 508 3.95e-101 311
Msa0545820 MtrunA17_Chr8g0351461 37.107 477 262 7 7 465 54 510 3.31e-99 306
Msa0545820 MtrunA17_Chr8g0351401 37.553 474 252 9 7 459 55 505 8.09e-99 306
Msa0545820 MtrunA17_Chr4g0067191 37.628 489 249 13 12 465 49 516 8.15e-99 306
Msa0545820 MtrunA17_Chr8g0351441 36.897 477 263 7 7 465 54 510 3.63e-98 304
Msa0545820 MtrunA17_Chr8g0351311 37.553 474 258 12 7 464 61 512 1.46e-95 297
Msa0545820 MtrunA17_Chr8g0351421 35.983 478 267 8 7 465 54 511 4.27e-95 296
Msa0545820 MtrunA17_Chr8g0351391 36.152 473 265 8 7 464 61 511 3.45e-92 288
Msa0545820 MtrunA17_Chr1g0204271 34.177 474 274 9 7 464 55 506 6.07e-90 283
Msa0545820 MtrunA17_Chr2g0309301 65.426 188 62 2 139 326 1 185 2.36e-82 252
Msa0545820 MtrunA17_Chr6g0449381 33.183 443 264 9 35 464 82 505 7.42e-82 261
Msa0545820 MtrunA17_Chr7g0214931 38.701 385 200 9 8 374 73 439 1.01e-80 256
Msa0545820 MtrunA17_Chr1g0184471 39.529 382 184 7 7 382 51 391 1.99e-80 254
Msa0545820 MtrunA17_Chr6g0449331 33.187 455 260 10 34 464 81 515 9.98e-79 254
Msa0545820 MtrunA17_Chr7g0227281 34.615 442 252 12 36 465 79 495 2.76e-78 252
Msa0545820 MtrunA17_Chr8g0380501 32.553 470 283 9 9 465 44 492 2.96e-78 252
Msa0545820 MtrunA17_Chr6g0449361 31.646 474 279 13 12 464 54 503 4.99e-78 251
Msa0545820 MtrunA17_Chr7g0227291 34.921 441 252 11 36 465 79 495 1.21e-77 250
Msa0545820 MtrunA17_Chr4g0004481 35.092 436 250 12 36 461 77 489 1.98e-77 249
Msa0545820 MtrunA17_Chr1g0163281 33.925 451 248 11 36 464 97 519 2.81e-77 250
Msa0545820 MtrunA17_Chr6g0449351 31.757 444 261 10 35 461 42 460 3.34e-77 249
Msa0545820 MtrunA17_Chr6g0449341 32.645 484 272 12 12 464 103 563 2.12e-75 246
Msa0545820 MtrunA17_Chr1g0163501 34.009 444 260 11 35 465 77 500 5.31e-75 244
Msa0545820 MtrunA17_Chr1g0163351 33.194 479 276 14 9 464 48 505 1.37e-74 243
Msa0545820 MtrunA17_Chr1g0163491 33.196 485 262 14 12 464 67 521 5.24e-74 241
Msa0545820 MtrunA17_Chr1g0163511 32.377 488 274 14 9 464 55 518 6.55e-74 241
Msa0545820 MtrunA17_Chr1g0163391 33.966 474 272 15 12 465 51 503 9.91e-74 240
Msa0545820 MtrunA17_Chr1g0163421 33.556 450 256 13 37 465 114 541 1.36e-71 236
Msa0545820 MtrunA17_Chr1g0171041 34.579 428 230 13 36 437 78 481 4.50e-71 233
Msa0545820 MtrunA17_Chr1g0163461 32.924 489 261 17 12 465 64 520 1.29e-69 230
Msa0545820 MtrunA17_Chr1g0163451 32.747 455 245 15 41 465 102 525 1.51e-69 230
Msa0545820 MtrunA17_Chr1g0163401 32.857 490 270 18 9 464 48 512 2.54e-67 224
Msa0545820 MtrunA17_Chr1g0183611 34.135 416 237 10 41 437 2 399 2.43e-66 218
Msa0545820 MtrunA17_Chr1g0164351 37.047 359 185 9 9 344 83 423 3.46e-66 218
Msa0545820 MtrunA17_Chr1g0163211 30.658 486 271 14 9 464 52 501 9.20e-65 217
Msa0545820 MtrunA17_Chr1g0163431 32.840 405 221 10 36 417 42 418 2.08e-60 203
Msa0545820 MtrunA17_Chr2g0308941 45.455 209 87 2 22 219 3 195 1.30e-54 181
Msa0545820 MtrunA17_Chr1g0204241 33.230 322 179 7 151 464 4 297 2.23e-54 184
Msa0545820 MtrunA17_Chr5g0403451 38.735 253 126 5 241 465 29 280 3.50e-51 174
Msa0545820 MtrunA17_Chr1g0163371 40.654 214 120 4 256 464 11 222 2.55e-47 162
Msa0545820 MtrunA17_Chr2g0309311 42.941 170 71 1 243 412 16 159 3.44e-38 137
Msa0545820 MtrunA17_Chr5g0403441 36.052 233 125 7 12 243 64 273 3.80e-37 138
Msa0545820 MtrunA17_Chr0c19g0493771 27.394 449 274 17 35 464 233 648 4.84e-33 132
Msa0545820 MtrunA17_Chr6g0457421 25.729 377 242 8 66 436 136 480 1.78e-27 115
Msa0545820 MtrunA17_Chr2g0308951 45.299 117 48 1 103 219 1 101 2.46e-27 105
Msa0545820 MtrunA17_Chr3g0128461 25.508 443 272 12 10 432 89 493 3.06e-27 114
Msa0545820 MtrunA17_Chr7g0215181 25.199 377 242 9 67 436 139 482 1.45e-26 112
Msa0545820 MtrunA17_Chr5g0396521 23.579 475 298 14 35 465 118 571 2.52e-26 112
Msa0545820 MtrunA17_Chr7g0248991 27.322 366 216 16 43 391 23 355 1.22e-25 107
Msa0545820 MtrunA17_Chr8g0357121 46.465 99 53 0 339 437 26 124 1.24e-25 102
Msa0545820 MtrunA17_Chr7g0235261 26.847 406 247 13 43 434 112 481 3.72e-25 108
Msa0545820 MtrunA17_Chr4g0004601 24.215 446 289 12 2 434 93 502 4.12e-24 105
Msa0545820 MtrunA17_Chr1g0164341 47.000 100 49 3 368 465 1 98 4.19e-24 96.7
Msa0545820 MtrunA17_Chr8g0357111 35.366 164 89 1 7 170 54 200 1.02e-22 95.9
Msa0545820 MtrunA17_Chr2g0308651 26.961 408 233 14 63 440 19 391 1.99e-22 99.4
Msa0545820 MtrunA17_Chr1g0163361 30.208 192 97 4 36 216 96 261 2.42e-22 96.7
Msa0545820 MtrunA17_Chr8g0362731 26.500 400 255 11 42 432 8 377 3.26e-22 98.6
Msa0545820 MtrunA17_Chr8g0354531 23.944 426 265 15 34 440 236 621 3.60e-22 99.8
Msa0545820 MtrunA17_Chr6g0484811 24.661 442 268 15 19 433 67 470 9.83e-22 97.8
Msa0545820 MtrunA17_Chr6g0484841 24.429 438 271 15 20 433 68 469 1.20e-21 97.8
Msa0545820 MtrunA17_Chr4g0030711 30.213 235 142 7 236 451 276 507 1.60e-21 97.4
Msa0545820 MtrunA17_Chr6g0451691 24.873 394 252 15 64 434 123 495 4.46e-21 95.9
Msa0545820 MtrunA17_Chr1g0179811 23.767 446 295 12 35 464 123 539 5.82e-21 95.9
Msa0545820 MtrunA17_Chr8g0354511 24.413 426 266 15 33 440 113 500 7.89e-21 95.1
Msa0545820 MtrunA17_Chr8g0354571 23.294 425 268 15 35 440 115 500 1.25e-20 94.7
Msa0545820 MtrunA17_Chr2g0310381 23.922 464 289 13 19 458 58 481 1.36e-20 94.4
Msa0545820 MtrunA17_Chr1g0164331 45.833 96 50 2 344 437 1 96 3.20e-20 87.0
Msa0545820 MtrunA17_Chr2g0310391 22.993 461 297 12 19 458 58 481 3.44e-20 93.2
Msa0545820 MtrunA17_Chr6g0451681 28.169 213 143 4 235 439 239 449 6.11e-20 92.4
Msa0545820 MtrunA17_Chr4g0008101 23.747 379 260 10 72 434 126 491 7.34e-20 92.4
Msa0545820 MtrunA17_Chr2g0280011 32.597 181 115 3 262 436 3 182 1.31e-19 87.0
Msa0545820 MtrunA17_Chr8g0382901 24.074 432 276 12 19 441 58 446 1.77e-19 91.7
Msa0545820 MtrunA17_Chr8g0382901 24.312 436 285 10 19 441 522 925 5.31e-19 90.5
Msa0545820 MtrunA17_Chr1g0205361 30.222 225 144 5 222 438 248 467 3.22e-19 90.1
Msa0545820 MtrunA17_Chr4g0030701 27.236 246 153 7 229 451 262 504 5.30e-19 89.7
Msa0545820 MtrunA17_Chr2g0308931 38.393 112 53 1 43 154 3 98 1.69e-18 82.0
Msa0545820 MtrunA17_Chr2g0313771 23.611 432 263 15 32 440 112 499 2.24e-18 87.8
Msa0545820 MtrunA17_Chr3g0101731 23.278 421 276 14 35 440 83 471 2.53e-18 87.4
Msa0545820 MtrunA17_Chr2g0280061 32.044 181 116 3 262 436 3 182 2.87e-18 83.2
Msa0545820 MtrunA17_Chr2g0280081 32.979 188 118 4 255 436 790 975 3.78e-18 87.8
Msa0545820 MtrunA17_Chr2g0280081 34.091 176 109 3 267 436 300 474 2.81e-17 85.1
Msa0545820 MtrunA17_Chr1g0207841 29.557 203 130 5 259 451 307 506 4.42e-18 86.7
Msa0545820 MtrunA17_Chr4g0046321 25.843 267 174 6 197 442 217 480 5.34e-18 86.7
Msa0545820 MtrunA17_Chr6g0466941 25.506 247 167 7 203 434 241 485 5.90e-18 86.3
Msa0545820 MtrunA17_Chr4g0058211 30.890 191 125 4 252 438 1 188 6.87e-18 82.4
Msa0545820 MtrunA17_Chr6g0466901 22.074 376 260 10 76 434 125 484 8.50e-18 85.9
Msa0545820 MtrunA17_Chr8g0387101 30.894 246 158 6 202 437 234 477 1.07e-17 85.5
Msa0545820 MtrunA17_Chr8g0364081 24.257 404 245 11 66 440 146 517 1.82e-17 85.1
Msa0545820 MtrunA17_Chr6g0451741 26.939 245 163 7 204 434 271 513 2.12e-17 84.7
Msa0545820 MtrunA17_Chr2g0314731 25.455 220 156 4 223 436 248 465 2.65e-17 84.3
Msa0545820 MtrunA17_Chr4g0058191 23.923 418 276 13 35 438 71 460 3.40e-17 84.0
Msa0545820 MtrunA17_Chr2g0280071 31.461 178 115 3 262 433 328 504 5.26e-17 84.0
Msa0545820 MtrunA17_Chr5g0430071 26.556 241 158 6 208 433 86 322 6.66e-17 82.0
Msa0545820 MtrunA17_Chr6g0463801 24.356 427 279 14 19 433 68 462 6.95e-17 83.2
Msa0545820 MtrunA17_Chr1g0203141 23.902 410 256 15 66 459 141 510 7.08e-17 83.2
Msa0545820 MtrunA17_Chr3g0101631 24.153 443 274 15 19 441 67 467 8.64e-17 82.8
Msa0545820 MtrunA17_Chr4g0039901 27.854 219 148 5 222 433 249 464 8.80e-17 82.8
Msa0545820 MtrunA17_Chr7g0224561 25.806 279 170 9 192 442 207 476 9.79e-17 82.8
Msa0545820 MtrunA17_Chr4g0046351 25.279 269 173 9 197 442 217 480 9.93e-17 82.8
Msa0545820 MtrunA17_Chr5g0431641 22.757 457 306 12 7 453 64 483 1.08e-16 82.4
Msa0545820 MtrunA17_Chr1g0197871 29.778 225 146 7 227 444 251 470 1.15e-16 82.4
Msa0545820 MtrunA17_Chr2g0313781 21.583 417 281 12 37 433 108 498 1.28e-16 82.4
Msa0545820 MtrunA17_Chr1g0205371 31.356 236 145 6 211 438 242 468 1.47e-16 82.0
Msa0545820 MtrunA17_Chr1g0197891 29.778 225 146 7 227 444 251 470 1.67e-16 81.6
Msa0545820 MtrunA17_Chr7g0255531 25.079 315 210 9 130 432 160 460 1.72e-16 81.6
Msa0545820 MtrunA17_Chr1g0197881 29.333 225 147 7 227 444 250 469 1.83e-16 81.6
Msa0545820 MtrunA17_Chr1g0197851 29.333 225 147 7 227 444 251 470 2.08e-16 81.6
Msa0545820 MtrunA17_Chr8g0381541 24.550 444 263 18 17 440 76 467 2.10e-16 81.6
Msa0545820 MtrunA17_Chr2g0313821 21.928 415 268 12 37 432 108 485 2.14e-16 81.6
Msa0545820 MtrunA17_Chr5g0405001 27.386 241 148 8 211 432 245 477 2.73e-16 81.3
Msa0545820 MtrunA17_Chr7g0224551 25.448 279 171 9 192 442 207 476 2.94e-16 81.3
Msa0545820 MtrunA17_Chr2g0280121 33.523 176 110 3 267 436 306 480 3.33e-16 80.9
Msa0545820 MtrunA17_Chr4g0063221 25.000 464 279 17 5 442 78 498 3.41e-16 80.9
Msa0545820 MtrunA17_Chr8g0390881 26.360 239 160 5 208 432 232 468 3.81e-16 80.9
Msa0545820 MtrunA17_Chr8g0390871 28.814 177 124 2 256 432 16 190 3.89e-16 77.8
Msa0545820 MtrunA17_Chr6g0451771 29.189 185 127 3 252 434 7 189 3.94e-16 77.4
Msa0545820 MtrunA17_Chr4g0046331 25.185 270 172 9 198 442 218 482 4.63e-16 80.5
Msa0545820 MtrunA17_Chr8g0381571 25.412 425 245 18 17 421 76 448 6.36e-16 80.1
Msa0545820 MtrunA17_Chr2g0313831 23.765 425 253 16 34 432 106 485 6.65e-16 80.1
Msa0545820 MtrunA17_Chr5g0430081 28.333 180 124 2 256 433 291 467 7.13e-16 80.1
Msa0545820 MtrunA17_Chr5g0430131 21.519 237 174 2 208 433 233 468 9.15e-16 79.7
Msa0545820 MtrunA17_Chr5g0431511 31.351 185 107 5 258 433 294 467 9.30e-16 79.7
Msa0545820 MtrunA17_Chr4g0058231 22.321 448 280 12 22 438 61 471 9.65e-16 79.3
Msa0545820 MtrunA17_Chr1g0160861 26.360 239 163 5 208 438 75 308 1.27e-15 77.8
Msa0545820 MtrunA17_Chr5g0395321 26.364 220 156 4 219 436 250 465 1.61e-15 79.0
Msa0545820 MtrunA17_Chr6g0472221 21.078 408 272 12 66 459 150 521 1.78e-15 78.6
Msa0545820 MtrunA17_Chr8g0369791 28.205 273 153 10 217 464 211 465 1.87e-15 78.6
Msa0545820 MtrunA17_Chr1g0164211 28.194 227 152 6 217 438 244 464 2.42e-15 78.2
Msa0545820 MtrunA17_Chr4g0058201 25.210 238 171 4 205 438 228 462 2.56e-15 78.2
Msa0545820 MtrunA17_Chr1g0160851 26.496 234 159 5 211 438 241 467 2.83e-15 78.2
Msa0545820 MtrunA17_Chr4g0047691 26.496 234 164 3 209 436 252 483 3.58e-15 77.8
Msa0545820 MtrunA17_Chr4g0035921 24.609 447 253 18 24 432 77 477 3.95e-15 77.8
Msa0545820 MtrunA17_Chr3g0141801 25.177 282 184 8 191 461 216 481 4.20e-15 77.4
Msa0545820 MtrunA17_Chr8g0346261 28.634 227 148 9 215 433 292 512 4.31e-15 77.4
Msa0545820 MtrunA17_Chr5g0431671 23.502 434 291 11 35 459 87 488 5.49e-15 77.0
Msa0545820 MtrunA17_Chr2g0313811 20.918 392 257 12 66 432 134 497 5.90e-15 77.0
Msa0545820 MtrunA17_Chr4g0014051 26.641 259 167 6 203 450 260 506 6.20e-15 77.0
Msa0545820 MtrunA17_Chr1g0193811 21.542 441 294 12 37 461 109 513 6.63e-15 77.0
Msa0545820 MtrunA17_Chr8g0380471 25.723 311 196 12 165 461 184 473 7.70e-15 76.6
Msa0545820 MtrunA17_Chr1g0203151 25.279 269 179 10 203 459 248 506 7.88e-15 76.6
Msa0545820 MtrunA17_Chr2g0280041 30.387 181 119 3 262 436 327 506 8.09e-15 76.6
Msa0545820 MtrunA17_Chr7g0258211 22.633 433 277 14 35 441 85 485 8.48e-15 76.6
Msa0545820 MtrunA17_Chr6g0472311 31.844 179 118 3 256 433 306 481 8.50e-15 76.6
Msa0545820 MtrunA17_Chr4g0011981 26.020 196 139 3 259 450 289 482 8.59e-15 76.6
Msa0545820 MtrunA17_Chr2g0314721 24.786 234 164 5 209 436 249 476 9.30e-15 76.3
Msa0545820 MtrunA17_Chr5g0445441 25.877 228 158 4 220 440 288 511 1.01e-14 76.3
Msa0545820 MtrunA17_Chr5g0413911 28.421 190 131 3 256 441 316 504 1.29e-14 76.3
Msa0545820 MtrunA17_Chr8g0356001 29.258 229 147 7 213 433 250 471 1.36e-14 75.9
Msa0545820 MtrunA17_Chr2g0314781 29.139 151 105 2 286 436 4 152 1.73e-14 71.6
Msa0545820 MtrunA17_Chr5g0395381 25.561 223 154 5 219 436 225 440 1.80e-14 75.5
Msa0545820 MtrunA17_Chr4g0020041 22.056 467 292 16 8 440 44 472 1.81e-14 75.5
Msa0545820 MtrunA17_Chr5g0408181 28.352 261 161 8 215 464 218 463 1.94e-14 75.1
Msa0545820 MtrunA17_Chr5g0445421 29.500 200 131 4 257 453 344 536 1.97e-14 75.5
Msa0545820 MtrunA17_Chr1g0174481 23.697 422 275 14 35 438 80 472 2.20e-14 75.1
Msa0545820 MtrunA17_Chr7g0246221 29.310 174 121 2 263 436 300 471 2.31e-14 75.1
Msa0545820 MtrunA17_Chr3g0101611 22.246 463 300 14 19 460 68 491 2.38e-14 75.1
Msa0545820 MtrunA17_Chr2g0310351 30.286 175 118 3 267 441 1 171 2.47e-14 71.6
Msa0545820 MtrunA17_Chr5g0445531 24.888 446 269 14 35 459 86 486 2.55e-14 75.1
Msa0545820 MtrunA17_Chr7g0246131 26.736 288 181 8 173 433 185 469 2.69e-14 75.1
Msa0545820 MtrunA17_Chr3g0094231 28.502 207 128 7 248 440 272 472 3.03e-14 74.7
Msa0545820 MtrunA17_Chr5g0395331 26.147 218 153 4 225 436 257 472 3.09e-14 74.7
Msa0545820 MtrunA17_Chr8g0361471 25.000 428 262 18 35 440 81 471 3.12e-14 74.7
Msa0545820 MtrunA17_Chr2g0307291 24.590 244 166 7 203 432 248 487 3.44e-14 74.7
Msa0545820 MtrunA17_Chr2g0307301 25.188 266 178 8 203 454 248 506 4.22e-14 74.3
Msa0545820 MtrunA17_Chr4g0046631 24.775 444 285 17 9 434 74 486 4.72e-14 74.3
Msa0545820 MtrunA17_Chr3g0101701 25.431 232 154 6 218 438 252 475 4.75e-14 74.3
Msa0545820 MtrunA17_Chr5g0409051 30.769 208 136 6 229 432 272 475 4.81e-14 74.3
Msa0545820 MtrunA17_Chr5g0445381 23.851 457 305 13 5 453 93 514 5.86e-14 73.9
Msa0545820 MtrunA17_Chr1g0156101 23.718 312 218 9 142 436 171 479 6.73e-14 73.9
Msa0545820 MtrunA17_Chr4g0024771 23.831 449 293 13 19 453 70 483 7.35e-14 73.6
Msa0545820 MtrunA17_Chr2g0313801 21.340 403 263 12 66 451 134 499 8.94e-14 73.6
Msa0545820 MtrunA17_Chr4g0046681 30.409 171 115 3 266 434 30 198 9.02e-14 70.9
Msa0545820 MtrunA17_Chr4g0011961 24.747 198 141 4 258 450 287 481 9.46e-14 73.2
Msa0545820 MtrunA17_Chr5g0431591 23.077 260 186 5 208 459 52 305 1.06e-13 72.0
Msa0545820 MtrunA17_Chr4g0047661 26.360 239 167 4 205 436 249 485 1.08e-13 73.2
Msa0545820 MtrunA17_Chr3g0107511 24.169 331 213 11 146 464 173 477 1.18e-13 72.8
Msa0545820 MtrunA17_Chr7g0246121 27.650 217 141 6 227 433 255 465 1.53e-13 72.8
Msa0545820 MtrunA17_Chr3g0101711 26.724 232 153 7 218 440 251 474 1.76e-13 72.4
Msa0545820 MtrunA17_Chr4g0058281 26.400 250 166 7 208 444 245 489 2.94e-13 71.6
Msa0545820 MtrunA17_Chr4g0047641 25.726 241 163 6 208 436 248 484 3.42e-13 71.6
Msa0545820 MtrunA17_Chr8g0354541 27.500 160 106 4 284 440 2 154 3.50e-13 67.8
Msa0545820 MtrunA17_Chr1g0184481 46.377 69 35 2 398 464 3 71 3.75e-13 64.7
Msa0545820 MtrunA17_Chr8g0364651 29.255 188 128 4 256 439 285 471 3.77e-13 71.2
Msa0545820 MtrunA17_Chr5g0430041 30.172 116 81 0 318 433 25 140 4.08e-13 67.8
Msa0545820 MtrunA17_Chr8g0377341 22.931 423 278 14 34 443 114 501 4.35e-13 71.2
Msa0545820 MtrunA17_Chr5g0445451 23.810 252 175 5 212 453 239 483 4.53e-13 71.2
Msa0545820 MtrunA17_Chr3g0107501 27.170 265 173 9 211 464 222 477 4.71e-13 70.9
Msa0545820 MtrunA17_Chr1g0154731 22.222 378 259 8 63 436 130 476 5.09e-13 70.9
Msa0545820 MtrunA17_Chr1g0153371 28.571 252 148 9 211 447 220 454 5.85e-13 70.9
Msa0545820 MtrunA17_Chr3g0101691 26.446 242 160 6 211 440 240 475 5.91e-13 70.9
Msa0545820 MtrunA17_Chr2g0288661 23.868 243 169 5 203 432 248 487 5.97e-13 70.9
Msa0545820 MtrunA17_Chr8g0351801 27.064 218 136 6 237 436 274 486 6.46e-13 70.9
Msa0545820 MtrunA17_Chr3g0086661 29.213 178 120 3 260 433 296 471 6.95e-13 70.5
Msa0545820 MtrunA17_Chr6g0458561 23.077 234 168 5 211 436 268 497 7.30e-13 70.5
Msa0545820 MtrunA17_Chr3g0116681 24.569 232 166 4 208 433 240 468 7.35e-13 70.5
Msa0545820 MtrunA17_Chr5g0443731 25.630 238 163 7 211 440 219 450 8.62e-13 70.1
Msa0545820 MtrunA17_Chr3g0084921 23.385 449 280 18 34 450 80 496 1.16e-12 70.1
Msa0545820 MtrunA17_Chr6g0466331 27.679 224 137 8 231 440 259 471 1.43e-12 69.7
Msa0545820 MtrunA17_Chr3g0135841 25.095 263 158 9 225 465 292 537 1.51e-12 69.7
Msa0545820 MtrunA17_Chr8g0372251 23.041 434 279 16 8 415 48 452 1.55e-12 69.3
Msa0545820 MtrunA17_Chr6g0465511 27.679 224 137 8 231 440 259 471 1.67e-12 69.3
Msa0545820 MtrunA17_Chr3g0101821 22.633 433 291 14 19 436 66 469 1.99e-12 69.3
Msa0545820 MtrunA17_Chr5g0419451 25.000 236 158 6 208 432 257 484 2.06e-12 69.3
Msa0545820 MtrunA17_Chr5g0430101 22.624 221 155 3 226 433 249 466 2.34e-12 68.9
Msa0545820 MtrunA17_Chr2g0293421 25.532 235 149 8 227 447 251 473 2.40e-12 68.9
Msa0545820 MtrunA17_Chr1g0151221 24.904 261 161 11 225 465 284 529 2.90e-12 68.6
Msa0545820 MtrunA17_Chr5g0445461 26.556 241 170 5 219 459 254 487 3.12e-12 68.6
Msa0545820 MtrunA17_Chr5g0401691 28.022 182 126 5 257 438 304 480 3.29e-12 68.6
Msa0545820 MtrunA17_Chr4g0047631 21.889 434 291 13 19 436 79 480 3.35e-12 68.6
Msa0545820 MtrunA17_Chr6g0455461 25.847 236 162 6 215 445 221 448 3.41e-12 68.2
Msa0545820 MtrunA17_Chr4g0011851 25.628 199 140 4 257 450 6 201 3.58e-12 65.9
Msa0545820 MtrunA17_Chr1g0200961 26.337 243 167 4 201 433 222 462 3.87e-12 68.2
Msa0545820 MtrunA17_Chr3g0078411 25.847 236 162 6 215 445 221 448 4.22e-12 68.2
Msa0545820 MtrunA17_Chr5g0403931 22.034 354 234 13 122 461 152 477 4.38e-12 68.2
Msa0545820 MtrunA17_Chr5g0430151 27.350 117 85 0 317 433 24 140 4.38e-12 64.7
Msa0545820 MtrunA17_Chr3g0086651 28.652 178 121 3 260 433 296 471 4.69e-12 68.2
Msa0545820 MtrunA17_Chr2g0293411 24.701 251 162 8 211 447 235 472 6.92e-12 67.4
Msa0545820 MtrunA17_Chr3g0101661 26.754 228 153 7 219 438 253 474 7.31e-12 67.4
Msa0545820 MtrunA17_Chr7g0218611 25.843 178 127 4 257 433 292 465 7.40e-12 67.4
Msa0545820 MtrunA17_Chr5g0430091 22.500 240 169 4 208 433 233 469 9.24e-12 67.0
Msa0545820 MtrunA17_Chr8g0339861 25.926 243 150 8 211 439 237 463 1.03e-11 67.0
Msa0545820 MtrunA17_Chr5g0403321 25.170 441 254 17 28 433 72 471 1.13e-11 66.6
Msa0545820 MtrunA17_Chr8g0351411 54.348 46 21 0 368 413 1 46 1.14e-11 59.7
Msa0545820 MtrunA17_Chr5g0430031 24.444 180 131 2 256 433 293 469 1.16e-11 66.6
Msa0545820 MtrunA17_Chr4g0044851 28.235 255 154 9 220 462 231 468 1.31e-11 66.6
Msa0545820 MtrunA17_Chr7g0254641 26.141 241 161 7 208 433 241 479 1.54e-11 66.2
Msa0545820 MtrunA17_Chr5g0431501 22.961 331 223 10 121 433 151 467 2.17e-11 65.9
Msa0545820 MtrunA17_Chr5g0431461 22.961 331 223 10 121 433 151 467 2.17e-11 65.9
Msa0545820 MtrunA17_Chr5g0403331 22.991 448 280 13 19 441 68 475 2.29e-11 65.9
Msa0545820 MtrunA17_Chr1g0174431 28.161 174 115 4 270 436 4 174 2.51e-11 63.2
Msa0545820 MtrunA17_Chr3g0101741 23.387 372 241 12 72 433 51 388 3.11e-11 65.1
Msa0545820 MtrunA17_Chr5g0430111 25.735 136 96 2 256 389 293 425 5.60e-11 64.3
Msa0545820 MtrunA17_Chr5g0401681 22.192 365 260 11 76 438 121 463 6.12e-11 64.3
Msa0545820 MtrunA17_Chr3g0107541 24.903 257 181 7 186 432 238 492 7.94e-11 64.3
Msa0545820 MtrunA17_Chr8g0355961 27.391 230 150 6 213 433 250 471 8.12e-11 63.9
Msa0545820 MtrunA17_Chr7g0218601 22.979 235 166 6 208 433 236 464 9.70e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545820 AT2G27690.1 59.915 469 166 5 2 465 44 495 0.0 576
Msa0545820 AT3G48520.1 47.436 468 212 7 10 465 55 500 3.94e-140 412
Msa0545820 AT5G63450.1 47.436 468 211 8 10 464 57 502 2.90e-132 392
Msa0545820 AT3G56630.1 45.064 466 230 6 10 465 50 499 3.60e-132 391
Msa0545820 AT5G63450.2 47.436 468 211 8 10 464 115 560 3.00e-131 391
Msa0545820 AT1G34540.1 43.777 466 235 7 10 465 50 498 1.57e-128 382
Msa0545820 AT3G01900.1 41.595 464 238 7 10 464 51 490 1.32e-121 364
Msa0545820 AT5G23190.1 42.952 454 221 7 31 465 107 541 2.86e-120 363
Msa0545820 AT5G08250.1 41.048 458 225 7 30 465 45 479 8.59e-116 349
Msa0545820 AT5G08250.2 41.048 458 225 7 30 465 107 541 3.10e-115 350
Msa0545820 AT1G63710.1 40.541 444 233 8 34 464 82 507 3.12e-108 331
Msa0545820 AT2G45970.1 40.268 447 233 7 34 464 82 510 1.92e-105 324
Msa0545820 AT1G01600.1 39.111 450 237 9 34 464 82 513 9.54e-103 318
Msa0545820 AT1G13140.1 38.938 452 235 8 35 465 94 525 3.69e-102 315
Msa0545820 AT4G00360.1 38.359 451 237 9 34 464 82 511 4.04e-102 316
Msa0545820 AT2G45510.1 39.112 473 251 9 10 465 57 509 5.74e-102 314
Msa0545820 AT1G24540.1 39.556 450 232 7 35 464 91 520 1.78e-101 313
Msa0545820 AT1G69500.1 36.255 502 256 9 7 465 44 524 3.03e-99 308
Msa0545820 AT3G26125.1 38.043 460 236 8 35 465 94 533 2.14e-98 306
Msa0545820 AT1G13150.1 38.274 452 238 7 35 465 87 518 2.69e-97 303
Msa0545820 AT2G44890.1 37.844 473 257 8 10 465 57 509 5.42e-97 301
Msa0545820 AT5G58860.1 38.702 447 235 8 34 464 85 508 2.45e-95 297
Msa0545820 AT1G13140.2 38.085 449 217 8 35 465 94 499 4.87e-95 296
Msa0545820 AT2G23180.1 36.726 452 245 11 35 465 82 513 1.57e-93 293
Msa0545820 AT2G44890.2 36.596 470 249 9 10 465 57 491 4.29e-88 278
Msa0545820 AT4G39480.1 35.398 452 249 11 36 464 82 513 9.09e-88 278
Msa0545820 AT4G39490.1 34.430 456 253 10 35 464 81 516 1.86e-85 272
Msa0545820 AT2G21910.1 34.375 448 255 9 35 464 80 506 2.23e-84 269
Msa0545820 AT4G39500.1 35.202 446 253 8 35 464 41 466 8.85e-82 261
Msa0545820 AT4G39500.2 35.202 446 253 8 35 464 91 516 4.95e-81 260
Msa0545820 AT5G52320.1 32.553 470 276 13 10 461 53 499 3.21e-79 255
Msa0545820 AT5G52320.2 32.618 466 273 13 10 457 53 495 1.31e-78 253
Msa0545820 AT1G65340.1 32.731 443 258 10 35 461 82 500 2.13e-77 250
Msa0545820 AT4G32170.1 33.708 445 259 8 35 464 80 503 6.23e-77 249
Msa0545820 AT4G39510.1 34.452 447 255 11 35 464 80 505 8.73e-75 244
Msa0545820 AT1G47620.1 32.366 448 262 10 36 464 90 515 1.82e-73 240
Msa0545820 AT1G57750.1 32.127 442 260 9 36 464 82 496 4.10e-73 239
Msa0545820 AT5G02900.1 32.594 451 239 12 36 464 72 479 1.35e-67 224
Msa0545820 AT1G57750.2 32.514 366 211 6 36 390 82 422 7.79e-60 202
Msa0545820 AT1G31800.1 26.058 449 282 17 35 465 154 570 2.02e-27 115
Msa0545820 AT5G24910.1 25.169 445 280 12 9 432 89 501 4.20e-27 114
Msa0545820 AT4G15110.1 23.168 505 317 16 7 465 100 579 4.71e-27 114
Msa0545820 AT3G53130.1 26.000 450 280 16 35 464 123 539 1.92e-26 112
Msa0545820 AT4G13310.1 25.682 440 284 13 18 444 61 470 2.35e-24 105
Msa0545820 AT2G30770.1 30.400 250 167 3 208 453 233 479 1.90e-23 103
Msa0545820 AT4G13290.1 26.267 434 281 14 18 444 62 463 8.34e-23 101
Msa0545820 AT5G24900.1 24.888 446 279 16 9 432 85 496 2.76e-22 100
Msa0545820 AT2G30750.1 28.968 252 168 4 208 453 233 479 9.75e-21 95.1
Msa0545820 AT5G24900.2 25.366 410 255 15 42 432 2 379 1.03e-20 94.4
Msa0545820 AT5G52400.1 28.090 267 176 8 204 461 257 516 2.21e-20 94.4
Msa0545820 AT1G11610.2 24.576 472 284 14 18 462 62 488 5.88e-20 92.8
Msa0545820 AT3G48270.1 30.270 185 128 1 260 444 281 464 8.78e-20 92.4
Msa0545820 AT5G51900.1 29.514 288 124 11 199 465 11 240 1.16e-19 88.6
Msa0545820 AT5G38450.1 24.485 388 241 9 65 436 138 489 1.86e-19 91.3
Msa0545820 AT3G14640.1 24.941 421 252 18 34 432 105 483 4.32e-19 90.1
Msa0545820 AT2G26710.1 26.667 390 227 15 62 432 135 484 5.00e-19 90.1
Msa0545820 AT3G14640.2 24.941 421 252 18 34 432 127 505 6.07e-19 90.1
Msa0545820 AT1G11610.1 24.726 457 274 14 18 446 62 476 6.33e-19 89.7
Msa0545820 AT3G61040.1 32.961 179 117 3 256 433 285 461 3.54e-18 87.4
Msa0545820 AT3G48300.1 23.110 463 302 15 13 461 55 477 4.85e-18 87.0
Msa0545820 AT3G48300.2 23.110 463 302 15 13 461 57 479 4.88e-18 87.0
Msa0545820 AT3G48310.1 26.222 225 159 2 218 436 234 457 5.21e-18 87.0
Msa0545820 AT1G67110.1 25.197 381 238 9 66 436 140 483 6.72e-18 86.7
Msa0545820 AT5G25140.1 24.408 422 268 14 33 436 73 461 7.91e-18 86.3
Msa0545820 AT2G24180.1 24.043 470 301 16 18 464 65 501 6.52e-17 83.6
Msa0545820 AT5G07990.1 28.745 247 153 7 208 438 233 472 8.86e-17 83.2
Msa0545820 AT1G64940.1 27.778 180 127 3 255 433 299 476 1.47e-16 82.4
Msa0545820 AT3G48280.1 29.508 183 128 1 260 442 281 462 1.49e-16 82.4
Msa0545820 AT2G40890.1 31.937 191 122 4 248 432 271 459 1.77e-16 82.0
Msa0545820 AT5G24950.1 26.383 235 165 2 208 436 232 464 1.89e-16 82.0
Msa0545820 AT3G14620.1 21.591 440 300 14 8 432 75 484 2.00e-16 82.0
Msa0545820 AT3G25180.1 26.437 261 168 8 200 450 246 492 2.70e-16 81.6
Msa0545820 AT5G45340.1 28.846 260 158 8 210 461 219 459 4.33e-16 80.9
Msa0545820 AT1G64950.1 28.804 184 128 3 255 437 298 479 5.22e-16 80.9
Msa0545820 AT4G19230.1 27.734 256 159 8 212 459 220 457 5.60e-16 80.5
Msa0545820 AT1G33730.1 29.218 243 157 6 208 440 104 341 7.86e-16 79.3
Msa0545820 AT1G33730.2 29.218 243 157 6 208 440 104 341 7.86e-16 79.3
Msa0545820 AT1G16410.1 25.081 307 191 10 184 454 234 537 9.29e-16 80.1
Msa0545820 AT2G46950.1 25.561 446 263 15 37 459 166 565 1.29e-15 79.7
Msa0545820 AT4G37340.1 27.386 241 156 6 208 441 236 464 1.52e-15 79.3
Msa0545820 AT3G14680.1 23.571 420 257 17 34 432 105 481 4.01e-15 78.2
Msa0545820 AT5G25120.1 23.434 431 289 12 19 436 59 461 4.85e-15 77.8
Msa0545820 AT5G35715.1 24.595 370 244 11 76 433 55 401 5.59e-15 77.4
Msa0545820 AT2G45550.1 30.000 190 124 5 252 440 296 477 7.87e-15 77.0
Msa0545820 AT2G23190.1 28.270 237 148 6 210 438 283 505 9.07e-15 77.0
Msa0545820 AT3G53280.1 23.502 434 277 12 22 433 61 461 1.04e-14 76.6
Msa0545820 AT5G42590.1 28.514 249 169 5 208 448 232 479 1.55e-14 76.3
Msa0545820 AT1G16400.1 25.207 242 166 6 208 436 258 497 1.77e-14 76.3
Msa0545820 AT3G20100.1 23.849 239 168 5 221 448 256 491 2.43e-14 75.5
Msa0545820 AT1G33720.4 26.295 251 165 9 203 440 102 345 2.69e-14 74.7
Msa0545820 AT1G33720.3 26.295 251 165 9 203 440 102 345 2.69e-14 74.7
Msa0545820 AT1G33720.5 26.295 251 165 9 203 440 102 345 2.69e-14 74.7
Msa0545820 AT1G64930.1 27.419 186 130 3 255 437 297 480 2.69e-14 75.5
Msa0545820 AT3G26210.1 21.543 376 247 11 76 433 120 465 3.46e-14 75.1
Msa0545820 AT1G33720.1 26.295 251 165 9 203 440 234 477 3.57e-14 75.1
Msa0545820 AT3G14630.1 22.525 404 272 11 38 432 106 477 4.05e-14 74.7
Msa0545820 AT3G48320.1 28.108 185 132 1 260 444 282 465 4.63e-14 74.7
Msa0545820 AT3G14650.1 21.556 450 295 14 5 432 68 481 5.34e-14 74.7
Msa0545820 AT3G14630.2 22.525 404 272 11 38 432 161 532 5.69e-14 74.7
Msa0545820 AT4G13770.1 26.087 230 153 7 220 440 248 469 7.18e-14 73.9
Msa0545820 AT4G15380.1 27.184 206 136 5 241 435 272 474 8.71e-14 73.9
Msa0545820 AT2G12190.1 27.957 186 129 3 255 437 298 481 9.50e-14 73.6
Msa0545820 AT3G20940.1 25.764 229 156 5 221 438 257 482 9.90e-14 73.6
Msa0545820 AT2G45570.1 28.947 228 149 6 214 440 263 478 1.06e-13 73.6
Msa0545820 AT3G48290.1 26.106 226 158 3 215 433 232 455 1.16e-13 73.6
Msa0545820 AT3G14690.1 22.170 424 266 14 34 436 105 485 1.85e-13 72.8
Msa0545820 AT5G36110.1 26.275 255 177 8 215 465 230 477 1.96e-13 72.8
Msa0545820 AT5G25900.1 25.292 257 181 5 197 451 247 494 2.04e-13 72.8
Msa0545820 AT3G44250.1 23.326 433 282 11 21 433 60 462 2.36e-13 72.4
Msa0545820 AT3G14690.2 22.170 424 266 14 34 436 140 520 2.47e-13 72.4
Msa0545820 AT3G26190.1 23.889 360 237 11 76 421 117 453 2.47e-13 72.4
Msa0545820 AT2G45560.1 29.891 184 120 4 252 433 296 472 2.52e-13 72.4
Msa0545820 AT1G13110.1 24.737 380 247 13 76 440 121 476 2.57e-13 72.4
Msa0545820 AT5G09970.1 23.934 422 273 18 31 433 111 503 2.81e-13 72.4
Msa0545820 AT3G03470.1 27.604 192 124 4 257 437 293 480 3.03e-13 72.0
Msa0545820 AT2G23220.1 27.347 245 156 6 201 438 247 476 3.40e-13 72.0
Msa0545820 AT5G04330.1 23.228 254 172 5 195 432 222 468 4.18e-13 71.6
Msa0545820 AT5G47990.1 25.523 239 160 6 214 438 247 481 5.20e-13 71.2
Msa0545820 AT2G42850.1 26.772 254 171 8 214 461 236 480 6.87e-13 70.9
Msa0545820 AT4G36220.1 29.143 175 118 5 260 432 309 479 8.10e-13 70.9
Msa0545820 AT4G19230.2 27.511 229 142 7 212 432 220 432 8.11e-13 70.9
Msa0545820 AT1G01190.2 27.074 229 152 8 212 433 283 503 8.33e-13 70.9
Msa0545820 AT2G46960.2 23.182 440 285 15 37 459 109 512 8.45e-13 70.9
Msa0545820 AT1G01190.1 27.074 229 152 8 212 433 278 498 8.71e-13 70.9
Msa0545820 AT3G26200.1 22.300 426 296 10 21 433 60 463 1.24e-12 70.1
Msa0545820 AT2G46960.1 25.556 270 172 8 198 459 148 396 1.27e-12 69.7
Msa0545820 AT3G48290.2 34.167 120 79 0 314 433 362 481 1.36e-12 70.1
Msa0545820 AT1G13100.1 23.056 373 248 11 76 433 114 462 1.98e-12 69.7
Msa0545820 AT1G50560.1 22.593 270 191 8 182 438 221 485 2.08e-12 69.7
Msa0545820 AT3G26270.1 24.066 241 171 4 205 436 233 470 2.48e-12 69.3
Msa0545820 AT3G26290.2 25.871 402 250 15 79 460 136 509 2.85e-12 68.9
Msa0545820 AT3G20110.1 25.481 208 148 5 259 465 297 498 2.99e-12 68.9
Msa0545820 AT3G26290.1 25.871 402 250 15 79 460 123 496 3.04e-12 68.9
Msa0545820 AT2G42250.1 29.245 212 133 6 240 437 274 482 3.69e-12 68.9
Msa0545820 AT1G33720.2 28.261 184 124 4 259 440 193 370 3.74e-12 68.2
Msa0545820 AT5G45340.2 28.947 228 143 7 210 432 219 432 3.85e-12 68.6
Msa0545820 AT3G26330.1 20.627 383 256 8 95 452 126 485 6.55e-12 67.8
Msa0545820 AT1G74540.1 26.609 233 165 4 227 457 251 479 7.11e-12 67.8
Msa0545820 AT1G74550.1 26.961 204 143 4 257 457 273 473 7.54e-12 67.8
Msa0545820 AT5G05260.2 25.000 240 168 7 203 432 251 488 8.93e-12 67.8
Msa0545820 AT5G24960.1 26.407 231 151 3 210 436 250 465 9.78e-12 67.4
Msa0545820 AT4G22690.1 21.789 436 288 13 18 433 114 516 1.09e-11 67.4
Msa0545820 AT3G53300.1 27.556 225 139 6 222 433 250 463 1.40e-11 67.0
Msa0545820 AT4G37410.1 24.074 270 187 9 203 465 230 488 1.57e-11 66.6
Msa0545820 AT3G61880.1 26.009 223 150 9 220 433 280 496 1.78e-11 66.6
Msa0545820 AT3G61880.2 24.586 423 265 19 31 433 108 496 2.09e-11 66.6
Msa0545820 AT1G13080.2 27.586 174 125 1 260 433 176 348 2.09e-11 65.9
Msa0545820 AT1G13090.2 21.409 369 256 9 76 433 117 462 2.12e-11 66.2
Msa0545820 AT4G37430.1 24.615 260 179 6 179 433 213 460 2.49e-11 66.2
Msa0545820 AT1G13080.1 25.000 200 141 2 242 433 268 466 2.65e-11 66.2
Msa0545820 AT4G22710.1 21.789 436 288 13 18 433 83 485 3.39e-11 65.9
Msa0545820 AT3G19270.2 26.718 262 149 8 216 454 223 464 4.35e-11 65.5
Msa0545820 AT4G12320.1 22.581 248 179 6 200 436 236 481 4.89e-11 65.1

Find 87 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAAATGCATTATCTTAA+TGG 0.182669 4_1:+36621741 Msa0545820:CDS
GGATACTTAAAAGGACATTT+TGG 0.225017 4_1:-36621975 None:intergenic
GTAGAAAACTGTTTACCTTT+AGG 0.234206 4_1:-36620952 None:intergenic
TAGAAAACTGTTTACCTTTA+GGG 0.235315 4_1:-36620951 None:intergenic
ACAATCCTTGGTGATCTTCT+TGG 0.252655 4_1:+36620973 Msa0545820:CDS
TAACGGCGTCACCGTTAATA+TGG 0.274716 4_1:+36621367 Msa0545820:CDS
AGCGGGGTCGAGGGTTTGTT+TGG 0.284201 4_1:+36622007 Msa0545820:CDS
ACAATCCATGTTCATGTCTT+AGG 0.295926 4_1:+36620865 Msa0545820:CDS
CATTTGGGGACCCGATTGTT+TGG 0.298506 4_1:+36621911 Msa0545820:CDS
AGTAAAACGGTTTGATGTTC+GGG 0.302804 4_1:+36622076 Msa0545820:CDS
CTCGTTTAGAGGTGGTTTGC+CGG 0.310479 4_1:+36622145 Msa0545820:CDS
TTCAGCTCAACGAGCATTAA+CGG 0.327080 4_1:+36621350 Msa0545820:CDS
CGTTTCATCTTCCATATTAA+CGG 0.330602 4_1:-36621378 None:intergenic
TTCTGAGGTATTGTCTGCTT+TGG 0.332887 4_1:-36621181 None:intergenic
GGGTCGGATGGAGAACATTT+GGG 0.338668 4_1:+36621896 Msa0545820:CDS
AACATTTGTAAATTCTCGTT+TGG 0.348101 4_1:+36621252 Msa0545820:CDS
CGGTTTGATGTTCGGGTTGT+TGG 0.351401 4_1:+36622083 Msa0545820:CDS
TGGGTCGGATGGAGAACATT+TGG 0.366720 4_1:+36621895 Msa0545820:CDS
GGTTTAACTGCCTCGTTTAG+AGG 0.374139 4_1:+36622134 Msa0545820:CDS
ATGAAACGTTTCTTCAACAT+TGG 0.376330 4_1:+36621393 Msa0545820:CDS
ACCGTTGCTTCCGCGTTAAC+CGG 0.376488 4_1:+36621612 Msa0545820:CDS
TAGTAAAACGGTTTGATGTT+CGG 0.378116 4_1:+36622075 Msa0545820:CDS
CGGTTTAAATTCCAAACAAT+CGG 0.382230 4_1:-36621922 None:intergenic
GTTCTTTCATAAATCTTAAC+CGG 0.383823 4_1:-36622164 None:intergenic
AATTAAAATAGTAAACGATT+TGG 0.386462 4_1:+36621440 Msa0545820:CDS
TCTAAACGAGGCAGTTAAAC+CGG 0.397860 4_1:-36622132 None:intergenic
GCAAACTGCGGCTCTTGGTT+CGG 0.401671 4_1:-36622107 None:intergenic
CACTTATCACCCGTATGCTA+TGG 0.403576 4_1:+36621875 Msa0545820:CDS
GCGGGGTCGAGGGTTTGTTT+GGG 0.410361 4_1:+36622008 Msa0545820:CDS
CTTGAGCCGGGTTCATTACT+CGG 0.418598 4_1:-36621695 None:intergenic
AACTTTGAATCAAATTGAAC+CGG 0.419157 4_1:-36621795 None:intergenic
CGATTGTTTGGAATTTAAAC+CGG 0.422822 4_1:+36621923 Msa0545820:CDS
TGAAACGTTTCTTCAACATT+GGG 0.445209 4_1:+36621394 Msa0545820:CDS
AAAGTAGCGCACTCTTGAGC+CGG 0.450891 4_1:-36621708 None:intergenic
TAATAAATTCTTAAACCTTG+TGG 0.457155 4_1:+36620804 Msa0545820:CDS
GCATTTGCAAGATTTGAAAC+AGG 0.463179 4_1:-36621306 None:intergenic
CGGGTGCAAACTGCGGCTCT+TGG 0.471945 4_1:-36622112 None:intergenic
TCGTTGCTTCATTAGTAAAA+CGG 0.474372 4_1:+36622063 Msa0545820:CDS
TCAACGTTGACGGTCATTCG+TGG 0.480435 4_1:+36621007 Msa0545820:CDS
ACCGGTTAACGCGGAAGCAA+CGG 0.488090 4_1:-36621613 None:intergenic
AAACTTTCTTAACCATGAGT+TGG 0.488575 4_1:+36620779 None:intergenic
GTCGAGGGTTTGTTTGGGAA+AGG 0.490821 4_1:+36622013 Msa0545820:CDS
CAAAGACGAGAAATTGAGAA+TGG 0.495739 4_1:+36621480 Msa0545820:CDS
CTTCTTAAAGAATCACCAAC+AGG 0.496377 4_1:+36620841 Msa0545820:CDS
TGATTCAAAGTTCGCTCTTG+AGG 0.496939 4_1:+36621806 Msa0545820:CDS
CAAGAGCCGCAGTTTGCACC+CGG 0.497130 4_1:+36622113 Msa0545820:CDS
CTTGGTGATCTTCTTGGCCG+TGG 0.498898 4_1:+36620979 Msa0545820:CDS
TAAACCGGAGAGATGGTTGA+AGG 0.507528 4_1:+36621938 Msa0545820:CDS
GGTTTAAATTCCAAACAATC+GGG 0.512909 4_1:-36621921 None:intergenic
TCCATCCGACCCATAGCATA+CGG 0.514140 4_1:-36621885 None:intergenic
GAGCGATTCATGAGAGTATG+AGG 0.518184 4_1:+36621763 Msa0545820:CDS
CCATCCTTCAACCATCTCTC+CGG 0.528233 4_1:-36621942 None:intergenic
CCCGTATGCTATGGGTCGGA+TGG 0.528361 4_1:+36621884 Msa0545820:CDS
CGTGGTATCTTCAACGTTGA+CGG 0.529228 4_1:+36620997 Msa0545820:CDS
ACTTATCACCCGTATGCTAT+GGG 0.533505 4_1:+36621876 Msa0545820:CDS
AATTTCAACAACTACCCTAA+AGG 0.540258 4_1:+36620937 Msa0545820:CDS
AGTGATTCGTTCCTACGCTA+TGG 0.548477 4_1:+36621071 Msa0545820:CDS
AGATTTGAAACAGGAAGTGA+TGG 0.556552 4_1:-36621297 None:intergenic
TGGAATTTAAACCGGAGAGA+TGG 0.561605 4_1:+36621931 Msa0545820:CDS
AAGTAGCGCACTCTTGAGCC+GGG 0.563898 4_1:-36621707 None:intergenic
TCGGCAACAGAAGCTATAAG+AGG 0.572241 4_1:-36621129 None:intergenic
ATTGTCGAAGAACCCGAAAG+TGG 0.578643 4_1:+36621647 Msa0545820:CDS
CTAAACGAGGCAGTTAAACC+GGG 0.580288 4_1:-36622131 None:intergenic
TTAACTGCCTCGTTTAGAGG+TGG 0.582614 4_1:+36622137 Msa0545820:CDS
TTTGAATCAAATTGAACCGG+TGG 0.584985 4_1:-36621792 None:intergenic
GAGGATGACGTGTTACCAGA+TGG 0.591293 4_1:+36621825 Msa0545820:CDS
GAATTTATTAGACCAACTCA+TGG 0.591820 4_1:-36620791 None:intergenic
CCATCCGACCCATAGCATAC+GGG 0.592232 4_1:-36621884 None:intergenic
GGTCGGATGGAGAACATTTG+GGG 0.602556 4_1:+36621897 Msa0545820:CDS
CCGGAGAGATGGTTGAAGGA+TGG 0.605968 4_1:+36621942 Msa0545820:CDS
ATCACCCGTATGCTATGGGT+CGG 0.609704 4_1:+36621880 Msa0545820:CDS
GTCGAAAAGAACGTCTTCTG+AGG 0.632820 4_1:-36621196 None:intergenic
AGTGATGGAACAAGACAACA+TGG 0.634539 4_1:-36621282 None:intergenic
GTTAAACCGGGTGCAAACTG+CGG 0.639076 4_1:-36622119 None:intergenic
GTCGAAGAACCCGAAAGTGG+AGG 0.642090 4_1:+36621650 Msa0545820:CDS
AACCTCAAATCCAGAAAACG+TGG 0.643222 4_1:+36620897 Msa0545820:CDS
TGAACATGGATTGTTCCTGT+TGG 0.644979 4_1:-36620856 None:intergenic
AAAATGGCATCTCTTGAACT+CGG 0.657903 4_1:+36621042 Msa0545820:CDS
CGGCAAACCACCTCTAAACG+AGG 0.661985 4_1:-36622144 None:intergenic
TGTTACCTAAGACATGAACA+TGG 0.670896 4_1:-36620870 None:intergenic
GATGACAAGTTCCATAGCGT+AGG 0.676576 4_1:-36621082 None:intergenic
TCATCGAAGAAATCAAAACA+AGG 0.681346 4_1:+36621100 Msa0545820:CDS
GTTAGACCGAGTAATGAACC+CGG 0.697136 4_1:+36621689 Msa0545820:CDS
CGTCAACGTTGAAGATACCA+CGG 0.716028 4_1:-36620996 None:intergenic
GATGTGTGTAGTAATCCACA+AGG 0.726385 4_1:-36620819 None:intergenic
CACGGCCAAGAAGATCACCA+AGG 0.761755 4_1:-36620978 None:intergenic
GTGATGGAACAAGACAACAT+GGG 0.769475 4_1:-36621281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATAGTAAACGATT+TGG + chr4_1:36621440-36621459 Msa0545820:CDS 15.0%
!! AATTAAAATAGTAAACGATT+TGG + chr4_1:36621440-36621459 Msa0545820:CDS 15.0%
!! TAATAAATTCTTAAACCTTG+TGG + chr4_1:36620804-36620823 Msa0545820:CDS 20.0%
!! CGACAATAAAATAAAAAAAC+CGG - chr4_1:36621634-36621653 None:intergenic 20.0%
!!! TTTTTTATAAAAGTTCCATC+TGG - chr4_1:36621843-36621862 None:intergenic 20.0%
!!! AGATGGAACTTTTATAAAAA+AGG + chr4_1:36621842-36621861 Msa0545820:CDS 20.0%
!!! GATGGAACTTTTATAAAAAA+GGG + chr4_1:36621843-36621862 Msa0545820:CDS 20.0%
!!! ATGGAACTTTTATAAAAAAG+GGG + chr4_1:36621844-36621863 Msa0545820:CDS 20.0%
!! TAATAAATTCTTAAACCTTG+TGG + chr4_1:36620804-36620823 Msa0545820:CDS 20.0%
!! CGACAATAAAATAAAAAAAC+CGG - chr4_1:36621634-36621653 None:intergenic 20.0%
!!! TTTTTTATAAAAGTTCCATC+TGG - chr4_1:36621843-36621862 None:intergenic 20.0%
!!! AGATGGAACTTTTATAAAAA+AGG + chr4_1:36621842-36621861 Msa0545820:CDS 20.0%
!!! GATGGAACTTTTATAAAAAA+GGG + chr4_1:36621843-36621862 Msa0545820:CDS 20.0%
!!! ATGGAACTTTTATAAAAAAG+GGG + chr4_1:36621844-36621863 Msa0545820:CDS 20.0%
! TAGAAAACTGTTTACCTTTA+GGG - chr4_1:36620954-36620973 None:intergenic 25.0%
! AACATTTGTAAATTCTCGTT+TGG + chr4_1:36621252-36621271 Msa0545820:CDS 25.0%
! AACTTTGAATCAAATTGAAC+CGG - chr4_1:36621798-36621817 None:intergenic 25.0%
!!! AAAATGTCCTTTTAAGTATC+CGG + chr4_1:36621977-36621996 Msa0545820:CDS 25.0%
! GTTCTTTCATAAATCTTAAC+CGG - chr4_1:36622167-36622186 None:intergenic 25.0%
! TAGAAAACTGTTTACCTTTA+GGG - chr4_1:36620954-36620973 None:intergenic 25.0%
! AACATTTGTAAATTCTCGTT+TGG + chr4_1:36621252-36621271 Msa0545820:CDS 25.0%
! AACTTTGAATCAAATTGAAC+CGG - chr4_1:36621798-36621817 None:intergenic 25.0%
!!! AAAATGTCCTTTTAAGTATC+CGG + chr4_1:36621977-36621996 Msa0545820:CDS 25.0%
! GTTCTTTCATAAATCTTAAC+CGG - chr4_1:36622167-36622186 None:intergenic 25.0%
AATTTCAACAACTACCCTAA+AGG + chr4_1:36620937-36620956 Msa0545820:CDS 30.0%
GTAGAAAACTGTTTACCTTT+AGG - chr4_1:36620955-36620974 None:intergenic 30.0%
! AAACAGTTTTCTACAATCCT+TGG + chr4_1:36620961-36620980 Msa0545820:CDS 30.0%
TCATCGAAGAAATCAAAACA+AGG + chr4_1:36621100-36621119 Msa0545820:CDS 30.0%
CGTTTCATCTTCCATATTAA+CGG - chr4_1:36621381-36621400 None:intergenic 30.0%
ATGAAACGTTTCTTCAACAT+TGG + chr4_1:36621393-36621412 Msa0545820:CDS 30.0%
TGAAACGTTTCTTCAACATT+GGG + chr4_1:36621394-36621413 Msa0545820:CDS 30.0%
! AGATCTTCTATCTCGTTTTA+TGG + chr4_1:36621518-36621537 Msa0545820:CDS 30.0%
! GATCTTCTATCTCGTTTTAT+GGG + chr4_1:36621519-36621538 Msa0545820:CDS 30.0%
!!! TGTTGTTAGTTTTCTGTTAG+CGG + chr4_1:36621581-36621600 Msa0545820:CDS 30.0%
AATAAAAAAACCGGTTAACG+CGG - chr4_1:36621625-36621644 None:intergenic 30.0%
CGTGAAATGCATTATCTTAA+TGG + chr4_1:36621741-36621760 Msa0545820:CDS 30.0%
! CTTTTATAAAAAAGGGGAGT+CGG + chr4_1:36621850-36621869 Msa0545820:CDS 30.0%
! TTTTATAAAAAAGGGGAGTC+GGG + chr4_1:36621851-36621870 Msa0545820:CDS 30.0%
GGTTTAAATTCCAAACAATC+GGG - chr4_1:36621924-36621943 None:intergenic 30.0%
CGGTTTAAATTCCAAACAAT+CGG - chr4_1:36621925-36621944 None:intergenic 30.0%
! CGATTGTTTGGAATTTAAAC+CGG + chr4_1:36621923-36621942 Msa0545820:CDS 30.0%
! GGATACTTAAAAGGACATTT+TGG - chr4_1:36621978-36621997 None:intergenic 30.0%
TGAAAAACCGGATACTTAAA+AGG - chr4_1:36621987-36622006 None:intergenic 30.0%
TCGTTGCTTCATTAGTAAAA+CGG + chr4_1:36622063-36622082 Msa0545820:CDS 30.0%
TAGTAAAACGGTTTGATGTT+CGG + chr4_1:36622075-36622094 Msa0545820:CDS 30.0%
AATTTCAACAACTACCCTAA+AGG + chr4_1:36620937-36620956 Msa0545820:CDS 30.0%
GTAGAAAACTGTTTACCTTT+AGG - chr4_1:36620955-36620974 None:intergenic 30.0%
! AAACAGTTTTCTACAATCCT+TGG + chr4_1:36620961-36620980 Msa0545820:CDS 30.0%
TCATCGAAGAAATCAAAACA+AGG + chr4_1:36621100-36621119 Msa0545820:CDS 30.0%
CGTTTCATCTTCCATATTAA+CGG - chr4_1:36621381-36621400 None:intergenic 30.0%
ATGAAACGTTTCTTCAACAT+TGG + chr4_1:36621393-36621412 Msa0545820:CDS 30.0%
TGAAACGTTTCTTCAACATT+GGG + chr4_1:36621394-36621413 Msa0545820:CDS 30.0%
! AGATCTTCTATCTCGTTTTA+TGG + chr4_1:36621518-36621537 Msa0545820:CDS 30.0%
! GATCTTCTATCTCGTTTTAT+GGG + chr4_1:36621519-36621538 Msa0545820:CDS 30.0%
!!! TGTTGTTAGTTTTCTGTTAG+CGG + chr4_1:36621581-36621600 Msa0545820:CDS 30.0%
AATAAAAAAACCGGTTAACG+CGG - chr4_1:36621625-36621644 None:intergenic 30.0%
CGTGAAATGCATTATCTTAA+TGG + chr4_1:36621741-36621760 Msa0545820:CDS 30.0%
! CTTTTATAAAAAAGGGGAGT+CGG + chr4_1:36621850-36621869 Msa0545820:CDS 30.0%
! TTTTATAAAAAAGGGGAGTC+GGG + chr4_1:36621851-36621870 Msa0545820:CDS 30.0%
GGTTTAAATTCCAAACAATC+GGG - chr4_1:36621924-36621943 None:intergenic 30.0%
CGGTTTAAATTCCAAACAAT+CGG - chr4_1:36621925-36621944 None:intergenic 30.0%
! CGATTGTTTGGAATTTAAAC+CGG + chr4_1:36621923-36621942 Msa0545820:CDS 30.0%
! GGATACTTAAAAGGACATTT+TGG - chr4_1:36621978-36621997 None:intergenic 30.0%
TGAAAAACCGGATACTTAAA+AGG - chr4_1:36621987-36622006 None:intergenic 30.0%
TCGTTGCTTCATTAGTAAAA+CGG + chr4_1:36622063-36622082 Msa0545820:CDS 30.0%
TAGTAAAACGGTTTGATGTT+CGG + chr4_1:36622075-36622094 Msa0545820:CDS 30.0%
CTTCTTAAAGAATCACCAAC+AGG + chr4_1:36620841-36620860 Msa0545820:CDS 35.0%
ACAATCCATGTTCATGTCTT+AGG + chr4_1:36620865-36620884 Msa0545820:CDS 35.0%
TGTTACCTAAGACATGAACA+TGG - chr4_1:36620873-36620892 None:intergenic 35.0%
! AGTATATACTCCACGTTTTC+TGG - chr4_1:36620910-36620929 None:intergenic 35.0%
GTGGAAGTTTCAACGAAAAA+TGG + chr4_1:36621026-36621045 Msa0545820:CDS 35.0%
AAAATGGCATCTCTTGAACT+CGG + chr4_1:36621042-36621061 Msa0545820:CDS 35.0%
! AGATTTGAAACAGGAAGTGA+TGG - chr4_1:36621300-36621319 None:intergenic 35.0%
! GCATTTGCAAGATTTGAAAC+AGG - chr4_1:36621309-36621328 None:intergenic 35.0%
CAAAGACGAGAAATTGAGAA+TGG + chr4_1:36621480-36621499 Msa0545820:CDS 35.0%
!!! GTTGTTAGTTTTCTGTTAGC+GGG + chr4_1:36621582-36621601 Msa0545820:CDS 35.0%
!!! GAATTTTTTCCTCCACTTTC+GGG - chr4_1:36621662-36621681 None:intergenic 35.0%
!!! CGAATTTTTTCCTCCACTTT+CGG - chr4_1:36621663-36621682 None:intergenic 35.0%
CGAAAGTGGAGGAAAAAATT+CGG + chr4_1:36621661-36621680 Msa0545820:CDS 35.0%
GAAAGTGGAGGAAAAAATTC+GGG + chr4_1:36621662-36621681 Msa0545820:CDS 35.0%
TTTGAATCAAATTGAACCGG+TGG - chr4_1:36621795-36621814 None:intergenic 35.0%
!!! TAAGTATCCGGTTTTTCAAG+CGG + chr4_1:36621989-36622008 Msa0545820:CDS 35.0%
AGTAAAACGGTTTGATGTTC+GGG + chr4_1:36622076-36622095 Msa0545820:CDS 35.0%
CTTCTTAAAGAATCACCAAC+AGG + chr4_1:36620841-36620860 Msa0545820:CDS 35.0%
ACAATCCATGTTCATGTCTT+AGG + chr4_1:36620865-36620884 Msa0545820:CDS 35.0%
TGTTACCTAAGACATGAACA+TGG - chr4_1:36620873-36620892 None:intergenic 35.0%
! AGTATATACTCCACGTTTTC+TGG - chr4_1:36620910-36620929 None:intergenic 35.0%
GTGGAAGTTTCAACGAAAAA+TGG + chr4_1:36621026-36621045 Msa0545820:CDS 35.0%
AAAATGGCATCTCTTGAACT+CGG + chr4_1:36621042-36621061 Msa0545820:CDS 35.0%
! AGATTTGAAACAGGAAGTGA+TGG - chr4_1:36621300-36621319 None:intergenic 35.0%
! GCATTTGCAAGATTTGAAAC+AGG - chr4_1:36621309-36621328 None:intergenic 35.0%
CAAAGACGAGAAATTGAGAA+TGG + chr4_1:36621480-36621499 Msa0545820:CDS 35.0%
!!! GTTGTTAGTTTTCTGTTAGC+GGG + chr4_1:36621582-36621601 Msa0545820:CDS 35.0%
!!! GAATTTTTTCCTCCACTTTC+GGG - chr4_1:36621662-36621681 None:intergenic 35.0%
!!! CGAATTTTTTCCTCCACTTT+CGG - chr4_1:36621663-36621682 None:intergenic 35.0%
CGAAAGTGGAGGAAAAAATT+CGG + chr4_1:36621661-36621680 Msa0545820:CDS 35.0%
GAAAGTGGAGGAAAAAATTC+GGG + chr4_1:36621662-36621681 Msa0545820:CDS 35.0%
TTTGAATCAAATTGAACCGG+TGG - chr4_1:36621795-36621814 None:intergenic 35.0%
!!! TAAGTATCCGGTTTTTCAAG+CGG + chr4_1:36621989-36622008 Msa0545820:CDS 35.0%
AGTAAAACGGTTTGATGTTC+GGG + chr4_1:36622076-36622095 Msa0545820:CDS 35.0%
GATGTGTGTAGTAATCCACA+AGG - chr4_1:36620822-36620841 None:intergenic 40.0%
! TGAACATGGATTGTTCCTGT+TGG - chr4_1:36620859-36620878 None:intergenic 40.0%
AACCTCAAATCCAGAAAACG+TGG + chr4_1:36620897-36620916 Msa0545820:CDS 40.0%
! ACAATCCTTGGTGATCTTCT+TGG + chr4_1:36620973-36620992 Msa0545820:CDS 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG - chr4_1:36621184-36621203 None:intergenic 40.0%
! GTGATGGAACAAGACAACAT+GGG - chr4_1:36621284-36621303 None:intergenic 40.0%
! AGTGATGGAACAAGACAACA+TGG - chr4_1:36621285-36621304 None:intergenic 40.0%
TTCAGCTCAACGAGCATTAA+CGG + chr4_1:36621350-36621369 Msa0545820:CDS 40.0%
TGATTCAAAGTTCGCTCTTG+AGG + chr4_1:36621806-36621825 Msa0545820:CDS 40.0%
ACTTATCACCCGTATGCTAT+GGG + chr4_1:36621876-36621895 Msa0545820:CDS 40.0%
TGGAATTTAAACCGGAGAGA+TGG + chr4_1:36621931-36621950 Msa0545820:CDS 40.0%
!!! AAGTATCCGGTTTTTCAAGC+GGG + chr4_1:36621990-36622009 Msa0545820:CDS 40.0%
TCTAAACGAGGCAGTTAAAC+CGG - chr4_1:36622135-36622154 None:intergenic 40.0%
GATGTGTGTAGTAATCCACA+AGG - chr4_1:36620822-36620841 None:intergenic 40.0%
! TGAACATGGATTGTTCCTGT+TGG - chr4_1:36620859-36620878 None:intergenic 40.0%
AACCTCAAATCCAGAAAACG+TGG + chr4_1:36620897-36620916 Msa0545820:CDS 40.0%
! ACAATCCTTGGTGATCTTCT+TGG + chr4_1:36620973-36620992 Msa0545820:CDS 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG - chr4_1:36621184-36621203 None:intergenic 40.0%
! GTGATGGAACAAGACAACAT+GGG - chr4_1:36621284-36621303 None:intergenic 40.0%
! AGTGATGGAACAAGACAACA+TGG - chr4_1:36621285-36621304 None:intergenic 40.0%
TTCAGCTCAACGAGCATTAA+CGG + chr4_1:36621350-36621369 Msa0545820:CDS 40.0%
TGATTCAAAGTTCGCTCTTG+AGG + chr4_1:36621806-36621825 Msa0545820:CDS 40.0%
ACTTATCACCCGTATGCTAT+GGG + chr4_1:36621876-36621895 Msa0545820:CDS 40.0%
TGGAATTTAAACCGGAGAGA+TGG + chr4_1:36621931-36621950 Msa0545820:CDS 40.0%
!!! AAGTATCCGGTTTTTCAAGC+GGG + chr4_1:36621990-36622009 Msa0545820:CDS 40.0%
TCTAAACGAGGCAGTTAAAC+CGG - chr4_1:36622135-36622154 None:intergenic 40.0%
! CTCCACGTTTTCTGGATTTG+AGG - chr4_1:36620902-36620921 None:intergenic 45.0%
CGTCAACGTTGAAGATACCA+CGG - chr4_1:36620999-36621018 None:intergenic 45.0%
CGTGGTATCTTCAACGTTGA+CGG + chr4_1:36620997-36621016 Msa0545820:CDS 45.0%
AGTGATTCGTTCCTACGCTA+TGG + chr4_1:36621071-36621090 Msa0545820:CDS 45.0%
GATGACAAGTTCCATAGCGT+AGG - chr4_1:36621085-36621104 None:intergenic 45.0%
TCGGCAACAGAAGCTATAAG+AGG - chr4_1:36621132-36621151 None:intergenic 45.0%
!!! AGCACTCGCGGTTTTTTTCT+CGG - chr4_1:36621151-36621170 None:intergenic 45.0%
GTCGAAAAGAACGTCTTCTG+AGG - chr4_1:36621199-36621218 None:intergenic 45.0%
TAACGGCGTCACCGTTAATA+TGG + chr4_1:36621367-36621386 Msa0545820:CDS 45.0%
ATTGTCGAAGAACCCGAAAG+TGG + chr4_1:36621647-36621666 Msa0545820:CDS 45.0%
GTTAGACCGAGTAATGAACC+CGG + chr4_1:36621689-36621708 Msa0545820:CDS 45.0%
! GAGCGATTCATGAGAGTATG+AGG + chr4_1:36621763-36621782 Msa0545820:CDS 45.0%
!! GAGTATGAGGCTTTTTCCAC+CGG + chr4_1:36621776-36621795 Msa0545820:CDS 45.0%
CACTTATCACCCGTATGCTA+TGG + chr4_1:36621875-36621894 Msa0545820:CDS 45.0%
TAAACCGGAGAGATGGTTGA+AGG + chr4_1:36621938-36621957 Msa0545820:CDS 45.0%
!!! AGTATCCGGTTTTTCAAGCG+GGG + chr4_1:36621991-36622010 Msa0545820:CDS 45.0%
CTAAACGAGGCAGTTAAACC+GGG - chr4_1:36622134-36622153 None:intergenic 45.0%
GGTTTAACTGCCTCGTTTAG+AGG + chr4_1:36622134-36622153 Msa0545820:CDS 45.0%
TTAACTGCCTCGTTTAGAGG+TGG + chr4_1:36622137-36622156 Msa0545820:CDS 45.0%
! CTCCACGTTTTCTGGATTTG+AGG - chr4_1:36620902-36620921 None:intergenic 45.0%
CGTCAACGTTGAAGATACCA+CGG - chr4_1:36620999-36621018 None:intergenic 45.0%
CGTGGTATCTTCAACGTTGA+CGG + chr4_1:36620997-36621016 Msa0545820:CDS 45.0%
AGTGATTCGTTCCTACGCTA+TGG + chr4_1:36621071-36621090 Msa0545820:CDS 45.0%
GATGACAAGTTCCATAGCGT+AGG - chr4_1:36621085-36621104 None:intergenic 45.0%
TCGGCAACAGAAGCTATAAG+AGG - chr4_1:36621132-36621151 None:intergenic 45.0%
!!! AGCACTCGCGGTTTTTTTCT+CGG - chr4_1:36621151-36621170 None:intergenic 45.0%
GTCGAAAAGAACGTCTTCTG+AGG - chr4_1:36621199-36621218 None:intergenic 45.0%
TAACGGCGTCACCGTTAATA+TGG + chr4_1:36621367-36621386 Msa0545820:CDS 45.0%
ATTGTCGAAGAACCCGAAAG+TGG + chr4_1:36621647-36621666 Msa0545820:CDS 45.0%
GTTAGACCGAGTAATGAACC+CGG + chr4_1:36621689-36621708 Msa0545820:CDS 45.0%
! GAGCGATTCATGAGAGTATG+AGG + chr4_1:36621763-36621782 Msa0545820:CDS 45.0%
!! GAGTATGAGGCTTTTTCCAC+CGG + chr4_1:36621776-36621795 Msa0545820:CDS 45.0%
CACTTATCACCCGTATGCTA+TGG + chr4_1:36621875-36621894 Msa0545820:CDS 45.0%
TAAACCGGAGAGATGGTTGA+AGG + chr4_1:36621938-36621957 Msa0545820:CDS 45.0%
!!! AGTATCCGGTTTTTCAAGCG+GGG + chr4_1:36621991-36622010 Msa0545820:CDS 45.0%
CTAAACGAGGCAGTTAAACC+GGG - chr4_1:36622134-36622153 None:intergenic 45.0%
GGTTTAACTGCCTCGTTTAG+AGG + chr4_1:36622134-36622153 Msa0545820:CDS 45.0%
TTAACTGCCTCGTTTAGAGG+TGG + chr4_1:36622137-36622156 Msa0545820:CDS 45.0%
TCAACGTTGACGGTCATTCG+TGG + chr4_1:36621007-36621026 Msa0545820:CDS 50.0%
! GGATTTTGTGTGAGCACTCG+CGG - chr4_1:36621163-36621182 None:intergenic 50.0%
CTTGAGCCGGGTTCATTACT+CGG - chr4_1:36621698-36621717 None:intergenic 50.0%
AAAGTAGCGCACTCTTGAGC+CGG - chr4_1:36621711-36621730 None:intergenic 50.0%
GAGGATGACGTGTTACCAGA+TGG + chr4_1:36621825-36621844 Msa0545820:CDS 50.0%
ATCACCCGTATGCTATGGGT+CGG + chr4_1:36621880-36621899 Msa0545820:CDS 50.0%
TCCATCCGACCCATAGCATA+CGG - chr4_1:36621888-36621907 None:intergenic 50.0%
TGGGTCGGATGGAGAACATT+TGG + chr4_1:36621895-36621914 Msa0545820:CDS 50.0%
GGGTCGGATGGAGAACATTT+GGG + chr4_1:36621896-36621915 Msa0545820:CDS 50.0%
GGTCGGATGGAGAACATTTG+GGG + chr4_1:36621897-36621916 Msa0545820:CDS 50.0%
CATTTGGGGACCCGATTGTT+TGG + chr4_1:36621911-36621930 Msa0545820:CDS 50.0%
CCATCCTTCAACCATCTCTC+CGG - chr4_1:36621945-36621964 None:intergenic 50.0%
! GTCGAGGGTTTGTTTGGGAA+AGG + chr4_1:36622013-36622032 Msa0545820:CDS 50.0%
!! CGGTTTGATGTTCGGGTTGT+TGG + chr4_1:36622083-36622102 Msa0545820:CDS 50.0%
GTTAAACCGGGTGCAAACTG+CGG - chr4_1:36622122-36622141 None:intergenic 50.0%
! CTCGTTTAGAGGTGGTTTGC+CGG + chr4_1:36622145-36622164 Msa0545820:CDS 50.0%
TCAACGTTGACGGTCATTCG+TGG + chr4_1:36621007-36621026 Msa0545820:CDS 50.0%
! GGATTTTGTGTGAGCACTCG+CGG - chr4_1:36621163-36621182 None:intergenic 50.0%
CTTGAGCCGGGTTCATTACT+CGG - chr4_1:36621698-36621717 None:intergenic 50.0%
AAAGTAGCGCACTCTTGAGC+CGG - chr4_1:36621711-36621730 None:intergenic 50.0%
GAGGATGACGTGTTACCAGA+TGG + chr4_1:36621825-36621844 Msa0545820:CDS 50.0%
ATCACCCGTATGCTATGGGT+CGG + chr4_1:36621880-36621899 Msa0545820:CDS 50.0%
TCCATCCGACCCATAGCATA+CGG - chr4_1:36621888-36621907 None:intergenic 50.0%
TGGGTCGGATGGAGAACATT+TGG + chr4_1:36621895-36621914 Msa0545820:CDS 50.0%
GGGTCGGATGGAGAACATTT+GGG + chr4_1:36621896-36621915 Msa0545820:CDS 50.0%
GGTCGGATGGAGAACATTTG+GGG + chr4_1:36621897-36621916 Msa0545820:CDS 50.0%
CATTTGGGGACCCGATTGTT+TGG + chr4_1:36621911-36621930 Msa0545820:CDS 50.0%
CCATCCTTCAACCATCTCTC+CGG - chr4_1:36621945-36621964 None:intergenic 50.0%
! GTCGAGGGTTTGTTTGGGAA+AGG + chr4_1:36622013-36622032 Msa0545820:CDS 50.0%
!! CGGTTTGATGTTCGGGTTGT+TGG + chr4_1:36622083-36622102 Msa0545820:CDS 50.0%
GTTAAACCGGGTGCAAACTG+CGG - chr4_1:36622122-36622141 None:intergenic 50.0%
! CTCGTTTAGAGGTGGTTTGC+CGG + chr4_1:36622145-36622164 Msa0545820:CDS 50.0%
CACGGCCAAGAAGATCACCA+AGG - chr4_1:36620981-36621000 None:intergenic 55.0%
! CTTGGTGATCTTCTTGGCCG+TGG + chr4_1:36620979-36620998 Msa0545820:CDS 55.0%
ACCGTTGCTTCCGCGTTAAC+CGG + chr4_1:36621612-36621631 Msa0545820:CDS 55.0%
ACCGGTTAACGCGGAAGCAA+CGG - chr4_1:36621616-36621635 None:intergenic 55.0%
GTCGAAGAACCCGAAAGTGG+AGG + chr4_1:36621650-36621669 Msa0545820:CDS 55.0%
AAGTAGCGCACTCTTGAGCC+GGG - chr4_1:36621710-36621729 None:intergenic 55.0%
CCATCCGACCCATAGCATAC+GGG - chr4_1:36621887-36621906 None:intergenic 55.0%
CCGGAGAGATGGTTGAAGGA+TGG + chr4_1:36621942-36621961 Msa0545820:CDS 55.0%
CTCGACCCCGCTTGAAAAAC+CGG - chr4_1:36621999-36622018 None:intergenic 55.0%
!!! GGTTTTTCAAGCGGGGTCGA+GGG + chr4_1:36621998-36622017 Msa0545820:CDS 55.0%
GCAAACTGCGGCTCTTGGTT+CGG - chr4_1:36622110-36622129 None:intergenic 55.0%
CGGCAAACCACCTCTAAACG+AGG - chr4_1:36622147-36622166 None:intergenic 55.0%
CACGGCCAAGAAGATCACCA+AGG - chr4_1:36620981-36621000 None:intergenic 55.0%
! CTTGGTGATCTTCTTGGCCG+TGG + chr4_1:36620979-36620998 Msa0545820:CDS 55.0%
ACCGTTGCTTCCGCGTTAAC+CGG + chr4_1:36621612-36621631 Msa0545820:CDS 55.0%
ACCGGTTAACGCGGAAGCAA+CGG - chr4_1:36621616-36621635 None:intergenic 55.0%
GTCGAAGAACCCGAAAGTGG+AGG + chr4_1:36621650-36621669 Msa0545820:CDS 55.0%
AAGTAGCGCACTCTTGAGCC+GGG - chr4_1:36621710-36621729 None:intergenic 55.0%
CCATCCGACCCATAGCATAC+GGG - chr4_1:36621887-36621906 None:intergenic 55.0%
CCGGAGAGATGGTTGAAGGA+TGG + chr4_1:36621942-36621961 Msa0545820:CDS 55.0%
CTCGACCCCGCTTGAAAAAC+CGG - chr4_1:36621999-36622018 None:intergenic 55.0%
!!! GGTTTTTCAAGCGGGGTCGA+GGG + chr4_1:36621998-36622017 Msa0545820:CDS 55.0%
GCAAACTGCGGCTCTTGGTT+CGG - chr4_1:36622110-36622129 None:intergenic 55.0%
CGGCAAACCACCTCTAAACG+AGG - chr4_1:36622147-36622166 None:intergenic 55.0%
CCCGTATGCTATGGGTCGGA+TGG + chr4_1:36621884-36621903 Msa0545820:CDS 60.0%
!!! CGGTTTTTCAAGCGGGGTCG+AGG + chr4_1:36621997-36622016 Msa0545820:CDS 60.0%
! AGCGGGGTCGAGGGTTTGTT+TGG + chr4_1:36622007-36622026 Msa0545820:CDS 60.0%
! GCGGGGTCGAGGGTTTGTTT+GGG + chr4_1:36622008-36622027 Msa0545820:CDS 60.0%
CAAGAGCCGCAGTTTGCACC+CGG + chr4_1:36622113-36622132 Msa0545820:CDS 60.0%
CCCGTATGCTATGGGTCGGA+TGG + chr4_1:36621884-36621903 Msa0545820:CDS 60.0%
!!! CGGTTTTTCAAGCGGGGTCG+AGG + chr4_1:36621997-36622016 Msa0545820:CDS 60.0%
! AGCGGGGTCGAGGGTTTGTT+TGG + chr4_1:36622007-36622026 Msa0545820:CDS 60.0%
! GCGGGGTCGAGGGTTTGTTT+GGG + chr4_1:36622008-36622027 Msa0545820:CDS 60.0%
CAAGAGCCGCAGTTTGCACC+CGG + chr4_1:36622113-36622132 Msa0545820:CDS 60.0%
CGGGTGCAAACTGCGGCTCT+TGG - chr4_1:36622115-36622134 None:intergenic 65.0%
CGGGTGCAAACTGCGGCTCT+TGG - chr4_1:36622115-36622134 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 36620793 36622190 36620793 ID=Msa0545820;Name=Msa0545820
chr4_1 mRNA 36620793 36622190 36620793 ID=Msa0545820-mRNA-1;Parent=Msa0545820;Name=Msa0545820-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|465
chr4_1 exon 36620793 36622190 36620793 ID=Msa0545820-mRNA-1:exon:9288;Parent=Msa0545820-mRNA-1
chr4_1 CDS 36620793 36622190 36620793 ID=Msa0545820-mRNA-1:cds;Parent=Msa0545820-mRNA-1
Gene Sequence

>Msa0545820

ATGAGTTGGTCTAATAAATTCTTAAACCTTGTGGATTACTACACACATCTTCTTAAAGAATCACCAACAGGAACAATCCATGTTCATGTCTTAGGTAACACAATAACCTCAAATCCAGAAAACGTGGAGTATATACTCAAAACAAATTTCAACAACTACCCTAAAGGTAAACAGTTTTCTACAATCCTTGGTGATCTTCTTGGCCGTGGTATCTTCAACGTTGACGGTCATTCGTGGAAGTTTCAACGAAAAATGGCATCTCTTGAACTCGGTAGCGTAGTGATTCGTTCCTACGCTATGGAACTTGTCATCGAAGAAATCAAAACAAGGTTGCTTCCTCTTATAGCTTCTGTTGCCGAGAAAAAAACCGCGAGTGCTCACACAAAATCCAAAGCAGACAATACCTCAGAAGACGTTCTTTTCGACATGCAAGACATTCTTAGAAGATTCTCGTTCGACAACATTTGTAAATTCTCGTTTGGATTAGACCCATGTTGTCTTGTTCCATCACTTCCTGTTTCAAATCTTGCAAATGCTTTTGATCTCTCTTCAACACTTTCAGCTCAACGAGCATTAACGGCGTCACCGTTAATATGGAAGATGAAACGTTTCTTCAACATTGGGTCAGAGAAAAAGTTGAAAGAAGCAATTAAAATAGTAAACGATTTGGCAAATGAGATGATAAAACAAAGACGAGAAATTGAGAATGGAGTTGACTCACGAAAAGATCTTCTATCTCGTTTTATGGGTGCTTTGAATTCAAATGACGACGAATATTTAAGAGATATTGTTGTTAGTTTTCTGTTAGCGGGTCGTGATACCGTTGCTTCCGCGTTAACCGGTTTTTTTATTTTATTGTCGAAGAACCCGAAAGTGGAGGAAAAAATTCGGGTTGAGTTAGACCGAGTAATGAACCCGGCTCAAGAGTGCGCTACTTTTGAACAAACGCGTGAAATGCATTATCTTAATGGAGCGATTCATGAGAGTATGAGGCTTTTTCCACCGGTTCAATTTGATTCAAAGTTCGCTCTTGAGGATGACGTGTTACCAGATGGAACTTTTATAAAAAAGGGGAGTCGGGTCACTTATCACCCGTATGCTATGGGTCGGATGGAGAACATTTGGGGACCCGATTGTTTGGAATTTAAACCGGAGAGATGGTTGAAGGATGGTGTGTTTGTTCCAAAATGTCCTTTTAAGTATCCGGTTTTTCAAGCGGGGTCGAGGGTTTGTTTGGGAAAGGAGTTAGCTATTGTAGAGATGAAATCTGTCGTTGCTTCATTAGTAAAACGGTTTGATGTTCGGGTTGTTGGACCGAACCAAGAGCCGCAGTTTGCACCCGGTTTAACTGCCTCGTTTAGAGGTGGTTTGCCGGTTAAGATTTATGAAAGAACATGA

Protein sequence

>Msa0545820

MSWSNKFLNLVDYYTHLLKESPTGTIHVHVLGNTITSNPENVEYILKTNFNNYPKGKQFSTILGDLLGRGIFNVDGHSWKFQRKMASLELGSVVIRSYAMELVIEEIKTRLLPLIASVAEKKTASAHTKSKADNTSEDVLFDMQDILRRFSFDNICKFSFGLDPCCLVPSLPVSNLANAFDLSSTLSAQRALTASPLIWKMKRFFNIGSEKKLKEAIKIVNDLANEMIKQRREIENGVDSRKDLLSRFMGALNSNDDEYLRDIVVSFLLAGRDTVASALTGFFILLSKNPKVEEKIRVELDRVMNPAQECATFEQTREMHYLNGAIHESMRLFPPVQFDSKFALEDDVLPDGTFIKKGSRVTYHPYAMGRMENIWGPDCLEFKPERWLKDGVFVPKCPFKYPVFQAGSRVCLGKELAIVEMKSVVASLVKRFDVRVVGPNQEPQFAPGLTASFRGGLPVKIYERT*