AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0680900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680900 MtrunA17_Chr4g0026941 97.210 466 7 2 1 466 81 540 0.0 929
Msa0680900 MtrunA17_Chr2g0321171 65.591 465 139 3 1 465 55 498 0.0 637
Msa0680900 MtrunA17_Chr1g0178971 59.746 472 162 5 2 465 61 512 0.0 575
Msa0680900 MtrunA17_Chr7g0225531 44.676 479 226 9 3 465 56 511 3.73e-140 412
Msa0680900 MtrunA17_Chr7g0260831 44.325 467 225 10 11 465 59 502 2.28e-135 399
Msa0680900 MtrunA17_Chr3g0119681 45.511 479 218 8 10 465 59 517 7.51e-135 399
Msa0680900 MtrunA17_Chr7g0255131 44.681 470 227 8 10 465 58 508 2.34e-133 394
Msa0680900 MtrunA17_Chr7g0260821 42.827 467 232 11 11 465 60 503 4.91e-127 378
Msa0680900 MtrunA17_Chr1g0184461 43.908 476 235 10 1 465 50 504 1.53e-122 367
Msa0680900 MtrunA17_Chr1g0184421 42.675 471 238 9 7 466 56 505 1.55e-120 362
Msa0680900 MtrunA17_Chr4g0038271 40.749 454 230 8 31 465 127 560 9.18e-110 336
Msa0680900 MtrunA17_Chr1g0164321 41.410 454 224 10 35 465 113 547 8.61e-109 333
Msa0680900 MtrunA17_Chr8g0387001 39.729 443 237 6 34 465 82 505 2.02e-105 323
Msa0680900 MtrunA17_Chr8g0348751 39.286 448 237 8 34 465 82 510 1.70e-102 316
Msa0680900 MtrunA17_Chr3g0104351 39.556 450 230 7 34 465 91 516 2.01e-102 315
Msa0680900 MtrunA17_Chr5g0429651 40.402 448 227 7 34 465 85 508 6.07e-101 311
Msa0680900 MtrunA17_Chr4g0067191 37.347 490 250 12 12 466 49 516 2.27e-97 302
Msa0680900 MtrunA17_Chr8g0351401 37.053 475 254 9 7 460 55 505 4.41e-96 299
Msa0680900 MtrunA17_Chr8g0351461 36.820 478 263 8 7 466 54 510 5.41e-96 298
Msa0680900 MtrunA17_Chr8g0351441 36.611 478 264 8 7 466 54 510 8.43e-95 295
Msa0680900 MtrunA17_Chr8g0351311 37.895 475 256 13 7 465 61 512 9.16e-95 295
Msa0680900 MtrunA17_Chr8g0351421 35.699 479 268 9 7 466 54 511 3.86e-92 288
Msa0680900 MtrunA17_Chr8g0351391 36.920 474 261 10 7 465 61 511 4.01e-91 286
Msa0680900 MtrunA17_Chr1g0204271 33.895 475 275 9 7 465 55 506 6.05e-89 280
Msa0680900 MtrunA17_Chr6g0449381 32.883 444 265 9 35 465 82 505 1.93e-81 261
Msa0680900 MtrunA17_Chr2g0309301 64.894 188 63 2 140 327 1 185 3.81e-81 249
Msa0680900 MtrunA17_Chr7g0227281 35.520 442 249 13 36 466 79 495 1.17e-80 258
Msa0680900 MtrunA17_Chr8g0380501 32.696 471 282 9 9 466 44 492 1.41e-79 255
Msa0680900 MtrunA17_Chr4g0004481 34.325 437 253 10 36 462 77 489 2.89e-79 254
Msa0680900 MtrunA17_Chr7g0214931 38.342 386 201 9 8 375 73 439 3.38e-79 253
Msa0680900 MtrunA17_Chr1g0184471 39.267 382 186 8 7 383 51 391 1.31e-78 249
Msa0680900 MtrunA17_Chr7g0227291 33.937 442 256 10 36 466 79 495 1.55e-78 253
Msa0680900 MtrunA17_Chr6g0449331 32.895 456 261 10 34 465 81 515 5.56e-78 252
Msa0680900 MtrunA17_Chr1g0163281 34.071 452 247 11 36 465 97 519 1.11e-77 251
Msa0680900 MtrunA17_Chr6g0449361 31.368 475 280 13 12 465 54 503 1.78e-77 250
Msa0680900 MtrunA17_Chr6g0449351 31.461 445 262 10 35 462 42 460 8.22e-77 248
Msa0680900 MtrunA17_Chr1g0163501 34.459 444 259 10 35 466 77 500 1.09e-76 248
Msa0680900 MtrunA17_Chr1g0163491 33.745 486 259 14 12 465 67 521 1.62e-75 246
Msa0680900 MtrunA17_Chr1g0163351 33.060 487 267 14 9 465 48 505 3.12e-75 244
Msa0680900 MtrunA17_Chr1g0163391 34.177 474 272 14 12 466 51 503 5.95e-75 244
Msa0680900 MtrunA17_Chr6g0449341 32.577 485 272 12 12 465 103 563 6.14e-75 245
Msa0680900 MtrunA17_Chr1g0163511 32.582 488 274 13 9 465 55 518 6.63e-75 244
Msa0680900 MtrunA17_Chr1g0171041 35.047 428 229 12 36 438 78 481 1.49e-72 238
Msa0680900 MtrunA17_Chr1g0163421 33.038 451 258 12 37 466 114 541 5.22e-71 234
Msa0680900 MtrunA17_Chr1g0163461 32.449 490 263 16 12 466 64 520 5.63e-69 228
Msa0680900 MtrunA17_Chr1g0163451 32.675 456 245 15 41 466 102 525 8.21e-69 228
Msa0680900 MtrunA17_Chr1g0163401 33.469 490 268 16 9 465 48 512 1.76e-68 227
Msa0680900 MtrunA17_Chr1g0183611 34.293 417 236 10 41 438 2 399 3.40e-68 223
Msa0680900 MtrunA17_Chr1g0163211 31.070 486 270 13 9 465 52 501 2.88e-66 221
Msa0680900 MtrunA17_Chr1g0164351 36.667 360 186 9 9 345 83 423 1.12e-64 214
Msa0680900 MtrunA17_Chr1g0163431 32.759 406 221 10 36 418 42 418 8.85e-60 201
Msa0680900 MtrunA17_Chr1g0204241 32.919 322 180 7 152 465 4 297 5.70e-53 180
Msa0680900 MtrunA17_Chr2g0308941 43.810 210 90 2 22 220 3 195 1.32e-51 173
Msa0680900 MtrunA17_Chr5g0403451 38.735 253 126 5 242 466 29 280 3.62e-51 174
Msa0680900 MtrunA17_Chr1g0163371 40.654 214 120 4 257 465 11 222 3.01e-47 162
Msa0680900 MtrunA17_Chr2g0309311 42.941 170 71 1 244 413 16 159 3.43e-38 137
Msa0680900 MtrunA17_Chr5g0403441 35.470 234 126 6 12 244 64 273 1.01e-35 134
Msa0680900 MtrunA17_Chr0c19g0493771 27.152 453 271 15 35 465 233 648 3.03e-32 130
Msa0680900 MtrunA17_Chr5g0396521 23.270 477 298 14 35 466 118 571 3.59e-27 114
Msa0680900 MtrunA17_Chr3g0128461 25.450 444 272 12 10 433 89 493 4.68e-27 114
Msa0680900 MtrunA17_Chr6g0457421 25.260 384 236 9 66 437 136 480 5.87e-27 113
Msa0680900 MtrunA17_Chr7g0215181 25.132 378 242 9 67 437 139 482 1.81e-26 112
Msa0680900 MtrunA17_Chr8g0357121 46.465 99 53 0 340 438 26 124 1.34e-25 101
Msa0680900 MtrunA17_Chr7g0248991 27.027 370 213 14 43 392 23 355 8.78e-25 105
Msa0680900 MtrunA17_Chr7g0235261 26.650 409 245 13 43 435 112 481 1.88e-24 105
Msa0680900 MtrunA17_Chr2g0308951 42.373 118 51 1 103 220 1 101 2.55e-24 97.4
Msa0680900 MtrunA17_Chr1g0164341 47.000 100 49 3 369 466 1 98 4.26e-24 96.7
Msa0680900 MtrunA17_Chr4g0004601 23.937 447 290 12 2 435 93 502 3.76e-23 102
Msa0680900 MtrunA17_Chr1g0163361 31.088 193 95 4 36 217 96 261 6.97e-23 98.2
Msa0680900 MtrunA17_Chr6g0484841 24.831 443 264 15 20 434 68 469 1.47e-22 100
Msa0680900 MtrunA17_Chr8g0354531 23.888 427 265 15 34 441 236 621 3.09e-22 100
Msa0680900 MtrunA17_Chr4g0030711 25.908 413 239 14 76 452 126 507 6.17e-22 98.6
Msa0680900 MtrunA17_Chr6g0484811 24.099 444 269 15 19 434 67 470 2.32e-21 96.7
Msa0680900 MtrunA17_Chr8g0357111 35.152 165 89 2 7 171 54 200 3.03e-21 91.7
Msa0680900 MtrunA17_Chr1g0179811 24.609 447 291 13 35 465 123 539 3.93e-21 96.3
Msa0680900 MtrunA17_Chr8g0354511 25.059 427 263 14 33 441 113 500 4.57e-21 95.9
Msa0680900 MtrunA17_Chr6g0451691 28.512 242 155 7 209 435 257 495 4.97e-21 95.9
Msa0680900 MtrunA17_Chr2g0310381 24.236 458 296 12 19 459 58 481 6.06e-21 95.5
Msa0680900 MtrunA17_Chr8g0354571 24.178 426 264 15 35 441 115 500 6.28e-21 95.5
Msa0680900 MtrunA17_Chr8g0362731 26.173 405 251 10 42 433 8 377 1.16e-20 94.0
Msa0680900 MtrunA17_Chr2g0308651 26.650 409 234 12 63 441 19 391 1.29e-20 94.0
Msa0680900 MtrunA17_Chr2g0310391 23.297 455 304 11 19 459 58 481 1.76e-20 94.0
Msa0680900 MtrunA17_Chr8g0382901 24.249 433 275 12 19 442 58 446 3.04e-20 94.4
Msa0680900 MtrunA17_Chr8g0382901 24.045 445 276 12 19 442 522 925 1.07e-18 89.4
Msa0680900 MtrunA17_Chr1g0164331 45.833 96 50 2 345 438 1 96 3.21e-20 87.0
Msa0680900 MtrunA17_Chr6g0451681 28.169 213 143 4 236 440 239 449 6.15e-20 92.4
Msa0680900 MtrunA17_Chr2g0313771 23.434 431 266 13 32 441 112 499 6.99e-20 92.4
Msa0680900 MtrunA17_Chr4g0008101 22.895 380 263 10 72 435 126 491 8.63e-20 92.0
Msa0680900 MtrunA17_Chr2g0280011 32.597 181 115 3 263 437 3 182 1.27e-19 87.4
Msa0680900 MtrunA17_Chr1g0205361 30.222 225 144 5 223 439 248 467 3.30e-19 90.1
Msa0680900 MtrunA17_Chr4g0030701 27.236 246 153 7 230 452 262 504 6.00e-19 89.4
Msa0680900 MtrunA17_Chr1g0207841 25.369 406 248 15 76 452 127 506 1.90e-18 87.8
Msa0680900 MtrunA17_Chr4g0046321 25.843 267 174 6 198 443 217 480 2.53e-18 87.4
Msa0680900 MtrunA17_Chr2g0280061 32.044 181 116 3 263 437 3 182 2.72e-18 83.6
Msa0680900 MtrunA17_Chr6g0451741 23.529 374 261 9 76 435 151 513 3.59e-18 87.0
Msa0680900 MtrunA17_Chr3g0101731 22.986 422 277 13 35 441 83 471 3.99e-18 87.0
Msa0680900 MtrunA17_Chr2g0280081 32.979 188 118 4 256 437 790 975 4.17e-18 87.4
Msa0680900 MtrunA17_Chr2g0280081 34.091 176 109 3 268 437 300 474 2.88e-17 85.1
Msa0680900 MtrunA17_Chr4g0058211 30.890 191 125 4 253 439 1 188 7.53e-18 82.4
Msa0680900 MtrunA17_Chr6g0466941 21.693 378 261 10 76 435 125 485 8.35e-18 85.9
Msa0680900 MtrunA17_Chr8g0364081 24.324 407 242 11 66 441 146 517 9.64e-18 85.9
Msa0680900 MtrunA17_Chr8g0387101 32.143 224 140 6 225 438 256 477 1.06e-17 85.5
Msa0680900 MtrunA17_Chr6g0466901 21.809 376 262 9 76 435 125 484 1.13e-17 85.5
Msa0680900 MtrunA17_Chr7g0224561 25.806 279 170 9 193 443 207 476 2.33e-17 84.7
Msa0680900 MtrunA17_Chr2g0314731 25.455 220 156 4 224 437 248 465 2.55e-17 84.3
Msa0680900 MtrunA17_Chr5g0430071 26.087 276 179 8 179 434 52 322 3.92e-17 82.8
Msa0680900 MtrunA17_Chr4g0046351 25.279 269 173 9 198 443 217 480 4.43e-17 83.6
Msa0680900 MtrunA17_Chr4g0058191 30.435 184 124 3 257 439 280 460 4.81e-17 83.6
Msa0680900 MtrunA17_Chr7g0224551 23.904 456 275 17 19 443 62 476 5.76e-17 83.2
Msa0680900 MtrunA17_Chr2g0308931 36.283 113 55 1 43 155 3 98 6.04e-17 77.4
Msa0680900 MtrunA17_Chr2g0280071 31.461 178 115 3 263 434 328 504 6.11e-17 83.6
Msa0680900 MtrunA17_Chr1g0197891 25.614 285 184 8 167 445 208 470 6.87e-17 82.8
Msa0680900 MtrunA17_Chr3g0101631 23.928 443 276 14 19 442 67 467 7.07e-17 82.8
Msa0680900 MtrunA17_Chr4g0039901 27.854 219 148 5 223 434 249 464 8.24e-17 82.8
Msa0680900 MtrunA17_Chr1g0197871 29.778 225 146 7 228 445 251 470 1.05e-16 82.4
Msa0680900 MtrunA17_Chr1g0197881 25.263 285 185 8 167 445 207 469 1.26e-16 82.0
Msa0680900 MtrunA17_Chr1g0197851 25.263 285 185 8 167 445 208 470 1.26e-16 82.0
Msa0680900 MtrunA17_Chr1g0205371 31.356 236 145 6 212 439 242 468 1.54e-16 82.0
Msa0680900 MtrunA17_Chr2g0313821 22.837 416 264 12 37 433 108 485 1.55e-16 82.0
Msa0680900 MtrunA17_Chr5g0431641 23.144 458 304 12 7 454 64 483 1.82e-16 81.6
Msa0680900 MtrunA17_Chr2g0313781 21.770 418 280 12 37 434 108 498 1.84e-16 81.6
Msa0680900 MtrunA17_Chr4g0046331 25.185 270 172 9 199 443 218 482 1.91e-16 81.6
Msa0680900 MtrunA17_Chr8g0381541 24.494 445 263 18 17 441 76 467 2.07e-16 81.6
Msa0680900 MtrunA17_Chr7g0255531 31.414 191 123 4 249 433 272 460 2.85e-16 81.3
Msa0680900 MtrunA17_Chr5g0405001 27.386 241 148 8 212 433 245 477 3.03e-16 81.3
Msa0680900 MtrunA17_Chr8g0390881 26.337 243 163 5 205 433 228 468 3.07e-16 80.9
Msa0680900 MtrunA17_Chr2g0280121 33.523 176 110 3 268 437 306 480 3.45e-16 80.9
Msa0680900 MtrunA17_Chr6g0451771 29.189 185 127 3 253 435 7 189 3.85e-16 77.8
Msa0680900 MtrunA17_Chr4g0058201 22.616 451 291 14 7 439 52 462 4.32e-16 80.5
Msa0680900 MtrunA17_Chr8g0390871 28.814 177 124 2 257 433 16 190 4.46e-16 77.4
Msa0680900 MtrunA17_Chr5g0430131 22.222 270 192 4 181 434 201 468 4.75e-16 80.5
Msa0680900 MtrunA17_Chr1g0203141 23.358 411 258 15 66 460 141 510 5.05e-16 80.5
Msa0680900 MtrunA17_Chr8g0381571 25.352 426 245 18 17 422 76 448 5.64e-16 80.1
Msa0680900 MtrunA17_Chr5g0430081 28.333 180 124 2 257 434 291 467 6.79e-16 80.1
Msa0680900 MtrunA17_Chr4g0058231 21.604 449 283 11 22 439 61 471 7.04e-16 79.7
Msa0680900 MtrunA17_Chr5g0431511 31.351 185 107 5 259 434 294 467 9.96e-16 79.3
Msa0680900 MtrunA17_Chr1g0160861 26.360 239 163 5 209 439 75 308 1.21e-15 78.2
Msa0680900 MtrunA17_Chr4g0063221 23.644 461 290 15 5 443 78 498 1.23e-15 79.3
Msa0680900 MtrunA17_Chr5g0395321 26.364 220 156 4 220 437 250 465 1.67e-15 79.0
Msa0680900 MtrunA17_Chr8g0369791 28.205 273 153 10 218 465 211 465 1.90e-15 78.6
Msa0680900 MtrunA17_Chr6g0463801 24.402 418 270 13 31 434 77 462 2.13e-15 78.6
Msa0680900 MtrunA17_Chr1g0164211 28.194 227 152 6 218 439 244 464 2.59e-15 78.2
Msa0680900 MtrunA17_Chr4g0047691 26.471 238 167 3 206 437 248 483 2.93e-15 78.2
Msa0680900 MtrunA17_Chr1g0160851 26.496 234 159 5 212 439 241 467 3.09e-15 77.8
Msa0680900 MtrunA17_Chr7g0258211 22.791 430 281 14 35 442 85 485 3.63e-15 77.8
Msa0680900 MtrunA17_Chr3g0141801 25.177 282 184 8 192 462 216 481 4.08e-15 77.4
Msa0680900 MtrunA17_Chr8g0346261 28.634 227 148 9 216 434 292 512 4.50e-15 77.4
Msa0680900 MtrunA17_Chr8g0380471 24.737 380 239 16 94 462 130 473 4.65e-15 77.4
Msa0680900 MtrunA17_Chr4g0014051 23.426 397 256 9 66 451 147 506 4.90e-15 77.4
Msa0680900 MtrunA17_Chr5g0431671 23.678 435 290 11 35 460 87 488 5.43e-15 77.0
Msa0680900 MtrunA17_Chr2g0307291 21.687 415 275 15 34 433 108 487 8.36e-15 76.6
Msa0680900 MtrunA17_Chr8g0356001 27.049 244 161 6 202 434 234 471 8.37e-15 76.6
Msa0680900 MtrunA17_Chr5g0395381 24.194 310 201 10 142 437 151 440 8.41e-15 76.6
Msa0680900 MtrunA17_Chr2g0280041 30.387 181 119 3 263 437 327 506 8.65e-15 76.6
Msa0680900 MtrunA17_Chr6g0472311 31.844 179 118 3 257 434 306 481 8.78e-15 76.6
Msa0680900 MtrunA17_Chr2g0314721 24.786 234 164 5 210 437 249 476 9.10e-15 76.6
Msa0680900 MtrunA17_Chr4g0011981 26.020 196 139 3 260 451 289 482 9.20e-15 76.3
Msa0680900 MtrunA17_Chr5g0445441 25.877 228 158 4 221 441 288 511 1.04e-14 76.3
Msa0680900 MtrunA17_Chr1g0193811 21.493 442 294 13 37 462 109 513 1.13e-14 76.3
Msa0680900 MtrunA17_Chr2g0307301 22.197 437 287 16 34 455 108 506 1.13e-14 76.3
Msa0680900 MtrunA17_Chr5g0413911 28.421 190 131 3 257 442 316 504 1.28e-14 76.3
Msa0680900 MtrunA17_Chr2g0314781 29.139 151 105 2 287 437 4 152 1.69e-14 71.6
Msa0680900 MtrunA17_Chr5g0408181 28.352 261 161 8 216 465 218 463 1.80e-14 75.5
Msa0680900 MtrunA17_Chr3g0101611 22.414 464 299 15 19 461 68 491 1.83e-14 75.5
Msa0680900 MtrunA17_Chr5g0445421 29.500 200 131 4 258 454 344 536 2.10e-14 75.5
Msa0680900 MtrunA17_Chr6g0472221 20.538 409 274 12 66 460 150 521 2.25e-14 75.5
Msa0680900 MtrunA17_Chr7g0246221 29.310 174 121 2 264 437 300 471 2.45e-14 75.1
Msa0680900 MtrunA17_Chr2g0310351 30.286 175 118 3 268 442 1 171 2.47e-14 71.6
Msa0680900 MtrunA17_Chr1g0156101 23.323 313 218 7 143 437 171 479 2.74e-14 75.1
Msa0680900 MtrunA17_Chr1g0203151 28.426 197 131 6 267 460 317 506 3.11e-14 74.7
Msa0680900 MtrunA17_Chr3g0094231 28.502 207 128 7 249 441 272 472 3.39e-14 74.7
Msa0680900 MtrunA17_Chr4g0035921 27.778 252 144 10 212 433 234 477 3.45e-14 74.7
Msa0680900 MtrunA17_Chr5g0395331 26.147 218 153 4 226 437 257 472 3.49e-14 74.7
Msa0680900 MtrunA17_Chr5g0445531 25.450 444 270 14 35 460 86 486 3.53e-14 74.7
Msa0680900 MtrunA17_Chr7g0246131 26.736 288 181 8 174 434 185 469 3.79e-14 74.7
Msa0680900 MtrunA17_Chr1g0174481 23.877 423 274 15 35 439 80 472 4.08e-14 74.3
Msa0680900 MtrunA17_Chr1g0154731 22.691 379 257 7 63 437 130 476 4.20e-14 74.3
Msa0680900 MtrunA17_Chr8g0361471 24.476 429 264 18 35 441 81 471 4.76e-14 74.3
Msa0680900 MtrunA17_Chr3g0101701 25.431 232 154 6 219 439 252 475 4.91e-14 74.3
Msa0680900 MtrunA17_Chr5g0409051 30.769 208 136 6 230 433 272 475 5.42e-14 73.9
Msa0680900 MtrunA17_Chr4g0047661 26.360 239 167 4 206 437 249 485 8.50e-14 73.6
Msa0680900 MtrunA17_Chr3g0084921 24.222 450 276 20 34 451 80 496 9.07e-14 73.6
Msa0680900 MtrunA17_Chr4g0046681 30.409 171 115 3 267 435 30 198 9.77e-14 70.9
Msa0680900 MtrunA17_Chr4g0011961 24.747 198 141 4 259 451 287 481 1.02e-13 73.2
Msa0680900 MtrunA17_Chr5g0431591 23.162 272 193 6 197 460 42 305 1.13e-13 72.0
Msa0680900 MtrunA17_Chr3g0107511 24.169 331 213 11 147 465 173 477 1.15e-13 72.8
Msa0680900 MtrunA17_Chr4g0024771 27.234 235 166 4 220 454 254 483 1.40e-13 72.8
Msa0680900 MtrunA17_Chr2g0313801 21.287 404 263 12 66 452 134 499 1.52e-13 72.8
Msa0680900 MtrunA17_Chr3g0101711 26.724 232 153 7 219 441 251 474 1.87e-13 72.4
Msa0680900 MtrunA17_Chr7g0246121 27.650 217 141 6 228 434 255 465 1.91e-13 72.4
Msa0680900 MtrunA17_Chr4g0020041 21.564 473 288 17 8 441 44 472 2.27e-13 72.0
Msa0680900 MtrunA17_Chr4g0058281 26.400 250 166 7 209 445 245 489 2.99e-13 71.6
Msa0680900 MtrunA17_Chr5g0403321 25.285 439 257 18 28 434 72 471 3.29e-13 71.6
Msa0680900 MtrunA17_Chr4g0047641 25.726 241 163 6 209 437 248 484 3.35e-13 71.6
Msa0680900 MtrunA17_Chr8g0354541 27.500 160 106 4 285 441 2 154 3.41e-13 67.8
Msa0680900 MtrunA17_Chr1g0151221 24.384 406 232 19 111 466 149 529 3.44e-13 71.6
Msa0680900 MtrunA17_Chr8g0377341 23.585 424 275 15 34 444 114 501 3.93e-13 71.2
Msa0680900 MtrunA17_Chr5g0445381 24.236 458 303 14 5 454 93 514 3.95e-13 71.2
Msa0680900 MtrunA17_Chr5g0430041 30.172 116 81 0 319 434 25 140 4.01e-13 67.8
Msa0680900 MtrunA17_Chr8g0364651 29.255 188 128 4 257 440 285 471 4.03e-13 71.2
Msa0680900 MtrunA17_Chr1g0184481 46.377 69 35 2 399 465 3 71 4.10e-13 64.7
Msa0680900 MtrunA17_Chr5g0445451 23.810 252 175 5 213 454 239 483 4.93e-13 70.9
Msa0680900 MtrunA17_Chr2g0288661 21.635 416 272 13 35 433 109 487 5.40e-13 70.9
Msa0680900 MtrunA17_Chr3g0107501 27.170 265 173 9 212 465 222 477 5.51e-13 70.9
Msa0680900 MtrunA17_Chr3g0101691 26.446 242 160 6 212 441 240 475 5.63e-13 70.9
Msa0680900 MtrunA17_Chr1g0153371 28.571 252 148 9 212 448 220 454 6.09e-13 70.9
Msa0680900 MtrunA17_Chr8g0351801 27.064 218 136 6 238 437 274 486 6.79e-13 70.9
Msa0680900 MtrunA17_Chr3g0116681 24.359 234 168 4 207 434 238 468 7.52e-13 70.5
Msa0680900 MtrunA17_Chr3g0086661 29.213 178 120 3 261 434 296 471 7.56e-13 70.5
Msa0680900 MtrunA17_Chr6g0458561 23.077 234 168 5 212 437 268 497 7.74e-13 70.5
Msa0680900 MtrunA17_Chr1g0200961 26.337 243 167 4 202 434 222 462 8.19e-13 70.5
Msa0680900 MtrunA17_Chr5g0443731 23.377 308 207 10 142 441 164 450 8.97e-13 70.1
Msa0680900 MtrunA17_Chr4g0046631 28.205 234 158 6 209 435 256 486 1.01e-12 70.1
Msa0680900 MtrunA17_Chr1g0167321 23.628 419 273 12 35 437 81 468 1.22e-12 69.7
Msa0680900 MtrunA17_Chr6g0466331 26.667 255 156 9 207 441 228 471 1.31e-12 69.7
Msa0680900 MtrunA17_Chr3g0135841 25.095 263 158 9 226 466 292 537 1.60e-12 69.7
Msa0680900 MtrunA17_Chr6g0465511 27.679 224 137 8 232 441 259 471 1.66e-12 69.3
Msa0680900 MtrunA17_Chr5g0430101 22.222 243 172 4 205 434 228 466 2.17e-12 68.9
Msa0680900 MtrunA17_Chr5g0419451 25.000 236 158 6 209 433 257 484 2.56e-12 68.9
Msa0680900 MtrunA17_Chr2g0293421 25.532 235 149 8 228 448 251 473 3.01e-12 68.6
Msa0680900 MtrunA17_Chr5g0401691 28.022 182 126 5 258 439 304 480 3.30e-12 68.6
Msa0680900 MtrunA17_Chr6g0455461 25.847 236 162 6 216 446 221 448 3.52e-12 68.2
Msa0680900 MtrunA17_Chr4g0047631 25.630 238 169 3 206 437 245 480 3.58e-12 68.6
Msa0680900 MtrunA17_Chr5g0445461 26.556 241 170 5 220 460 254 487 3.64e-12 68.2
Msa0680900 MtrunA17_Chr4g0011851 25.628 199 140 4 258 451 6 201 4.06e-12 65.5
Msa0680900 MtrunA17_Chr3g0078411 25.847 236 162 6 216 446 221 448 4.51e-12 67.8
Msa0680900 MtrunA17_Chr3g0086651 28.652 178 121 3 261 434 296 471 4.54e-12 68.2
Msa0680900 MtrunA17_Chr5g0430151 27.350 117 85 0 318 434 24 140 4.75e-12 64.7
Msa0680900 MtrunA17_Chr7g0218611 25.843 178 127 4 258 434 292 465 6.93e-12 67.4
Msa0680900 MtrunA17_Chr3g0101661 26.754 228 153 7 220 439 253 474 7.15e-12 67.4
Msa0680900 MtrunA17_Chr8g0372251 25.822 213 136 7 221 416 245 452 8.05e-12 67.4
Msa0680900 MtrunA17_Chr2g0293411 24.701 251 162 8 212 448 235 472 8.15e-12 67.0
Msa0680900 MtrunA17_Chr1g0174461 22.371 447 300 17 12 439 59 477 8.59e-12 67.0
Msa0680900 MtrunA17_Chr5g0430091 22.541 244 172 4 205 434 229 469 8.65e-12 67.0
Msa0680900 MtrunA17_Chr8g0339861 25.926 243 150 8 212 440 237 463 9.79e-12 67.0
Msa0680900 MtrunA17_Chr8g0351411 54.348 46 21 0 369 414 1 46 1.10e-11 59.7
Msa0680900 MtrunA17_Chr5g0430031 24.444 180 131 2 257 434 293 469 1.11e-11 67.0
Msa0680900 MtrunA17_Chr4g0044851 28.235 255 154 9 221 463 231 468 1.32e-11 66.6
Msa0680900 MtrunA17_Chr7g0254641 26.141 241 161 7 209 434 241 479 1.51e-11 66.6
Msa0680900 MtrunA17_Chr3g0101821 22.069 435 292 14 19 437 66 469 2.31e-11 65.9
Msa0680900 MtrunA17_Chr1g0174431 28.161 174 115 4 271 437 4 174 2.52e-11 63.2
Msa0680900 MtrunA17_Chr5g0403331 27.473 182 128 3 261 442 298 475 3.42e-11 65.5
Msa0680900 MtrunA17_Chr8g0355961 26.639 244 162 6 202 434 234 471 3.50e-11 65.1
Msa0680900 MtrunA17_Chr5g0431501 23.140 242 164 6 207 434 234 467 5.32e-11 64.7
Msa0680900 MtrunA17_Chr5g0431461 23.140 242 164 6 207 434 234 467 5.32e-11 64.7
Msa0680900 MtrunA17_Chr5g0401681 22.131 366 260 11 76 439 121 463 5.63e-11 64.7
Msa0680900 MtrunA17_Chr5g0430111 25.735 136 96 2 257 390 293 425 5.83e-11 64.3
Msa0680900 MtrunA17_Chr4g0057001 23.237 241 175 4 202 434 243 481 5.90e-11 64.7
Msa0680900 MtrunA17_Chr7g0218601 22.785 237 168 6 207 434 234 464 8.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680900 AT2G27690.1 60.000 470 165 5 2 466 44 495 0.0 575
Msa0680900 AT3G48520.1 47.122 469 213 7 10 466 55 500 1.40e-138 408
Msa0680900 AT3G56630.1 44.754 467 231 6 10 466 50 499 1.55e-130 387
Msa0680900 AT5G63450.1 46.482 469 215 7 10 465 57 502 5.89e-130 386
Msa0680900 AT5G63450.2 46.482 469 215 7 10 465 115 560 5.53e-129 385
Msa0680900 AT1G34540.1 43.469 467 236 7 10 466 50 498 7.22e-127 378
Msa0680900 AT3G01900.1 41.505 465 238 7 10 465 51 490 5.53e-121 362
Msa0680900 AT5G23190.1 42.637 455 222 7 31 466 107 541 1.98e-119 361
Msa0680900 AT5G08250.1 40.741 459 226 7 30 466 45 479 3.54e-114 345
Msa0680900 AT5G08250.2 40.741 459 226 7 30 466 107 541 1.27e-113 345
Msa0680900 AT1G63710.1 40.449 445 233 8 34 465 82 507 1.57e-107 329
Msa0680900 AT2G45970.1 40.179 448 233 7 34 465 82 510 1.96e-105 324
Msa0680900 AT1G01600.1 38.803 451 238 9 34 465 82 513 2.21e-101 314
Msa0680900 AT4G00360.1 38.053 452 238 9 34 465 82 511 1.01e-100 312
Msa0680900 AT2G45510.1 38.608 474 253 8 10 466 57 509 1.68e-100 310
Msa0680900 AT1G13140.1 38.631 453 236 8 35 466 94 525 4.73e-100 310
Msa0680900 AT1G24540.1 39.246 451 233 7 35 465 91 520 1.24e-99 308
Msa0680900 AT1G69500.1 36.382 503 255 10 7 466 44 524 1.22e-97 303
Msa0680900 AT3G26125.1 37.744 461 237 8 35 466 94 533 3.23e-96 300
Msa0680900 AT2G44890.1 37.553 474 258 8 10 466 57 509 2.22e-95 297
Msa0680900 AT5G58860.1 38.839 448 234 8 34 465 85 508 2.61e-95 297
Msa0680900 AT1G13150.1 37.802 455 241 7 33 466 85 518 2.89e-95 297
Msa0680900 AT1G13140.2 37.778 450 218 8 35 466 94 499 4.84e-93 291
Msa0680900 AT2G23180.1 36.424 453 246 11 35 466 82 513 1.88e-92 290
Msa0680900 AT4G39480.1 34.879 453 251 11 36 465 82 513 5.46e-87 276
Msa0680900 AT2G44890.2 36.306 471 250 9 10 466 57 491 2.52e-86 273
Msa0680900 AT4G39490.1 34.136 457 254 10 35 465 81 516 1.78e-84 269
Msa0680900 AT2G21910.1 33.853 449 257 9 35 465 80 506 8.46e-83 265
Msa0680900 AT4G39500.1 34.899 447 254 8 35 465 41 466 7.39e-81 258
Msa0680900 AT4G39500.2 34.899 447 254 8 35 465 91 516 6.84e-80 257
Msa0680900 AT5G52320.1 32.696 471 275 13 10 462 53 499 1.50e-79 256
Msa0680900 AT5G52320.2 32.762 467 272 13 10 458 53 495 6.52e-79 254
Msa0680900 AT1G65340.1 32.432 444 259 10 35 462 82 500 8.72e-77 249
Msa0680900 AT4G32170.1 33.632 446 259 8 35 465 80 503 2.75e-76 248
Msa0680900 AT1G57750.1 32.280 443 259 9 36 465 82 496 1.87e-74 243
Msa0680900 AT4G39510.1 34.152 448 256 11 35 465 80 505 3.52e-74 242
Msa0680900 AT1G47620.1 32.071 449 263 10 36 465 90 515 1.94e-72 238
Msa0680900 AT5G02900.1 32.522 452 239 12 36 465 72 479 3.65e-67 223
Msa0680900 AT1G57750.2 32.698 367 210 6 36 391 82 422 4.72e-61 206
Msa0680900 AT4G15110.1 22.970 505 319 14 7 466 100 579 1.15e-28 119
Msa0680900 AT1G31800.1 26.154 455 275 18 35 466 154 570 6.71e-27 114
Msa0680900 AT5G24910.1 25.336 446 279 13 9 433 89 501 7.05e-27 114
Msa0680900 AT3G53130.1 25.721 451 281 14 35 465 123 539 1.84e-26 112
Msa0680900 AT4G13310.1 25.682 440 285 13 18 445 61 470 7.81e-24 104
Msa0680900 AT2G30770.1 30.556 252 168 3 207 454 231 479 1.42e-23 103
Msa0680900 AT4G13290.1 26.835 436 277 15 18 445 62 463 6.62e-23 101
Msa0680900 AT5G24900.1 25.169 445 280 16 9 433 85 496 2.92e-22 100
Msa0680900 AT2G30750.1 29.134 254 169 4 207 454 231 479 8.04e-21 95.5
Msa0680900 AT5G24900.2 25.428 409 257 14 42 433 2 379 1.34e-20 94.0
Msa0680900 AT1G11610.2 25.000 472 283 14 18 463 62 488 3.34e-20 93.6
Msa0680900 AT5G52400.1 28.992 238 157 7 230 462 286 516 3.61e-20 93.6
Msa0680900 AT3G48270.1 30.270 185 128 1 261 445 281 464 9.60e-20 92.0
Msa0680900 AT5G38450.1 24.679 389 240 9 65 437 138 489 1.60e-19 91.7
Msa0680900 AT5G51900.1 29.514 288 124 11 200 466 11 240 2.98e-19 87.4
Msa0680900 AT1G11610.1 25.164 457 273 14 18 447 62 476 3.51e-19 90.5
Msa0680900 AT2G26710.1 26.667 390 228 15 62 433 135 484 8.82e-19 89.4
Msa0680900 AT3G14640.1 25.118 422 251 18 34 433 105 483 1.24e-18 89.0
Msa0680900 AT3G14640.2 25.118 422 251 18 34 433 127 505 1.57e-18 88.6
Msa0680900 AT3G48310.1 26.471 238 165 3 206 437 224 457 1.91e-18 88.2
Msa0680900 AT3G48300.1 21.983 464 307 14 13 462 55 477 3.13e-18 87.4
Msa0680900 AT3G48300.2 21.983 464 307 14 13 462 57 479 3.16e-18 87.4
Msa0680900 AT3G61040.1 32.961 179 117 3 257 434 285 461 3.63e-18 87.4
Msa0680900 AT5G25140.1 25.059 423 265 14 33 437 73 461 4.85e-18 87.0
Msa0680900 AT1G67110.1 25.587 383 235 9 66 437 140 483 1.43e-17 85.5
Msa0680900 AT3G14620.1 21.995 441 298 14 8 433 75 484 2.22e-17 85.1
Msa0680900 AT3G14680.1 24.228 421 254 17 34 433 105 481 3.35e-17 84.3
Msa0680900 AT2G24180.1 23.567 471 303 16 18 465 65 501 4.92e-17 84.0
Msa0680900 AT2G40890.1 26.645 304 199 9 142 433 168 459 5.32e-17 84.0
Msa0680900 AT5G07990.1 28.745 247 153 7 209 439 233 472 8.38e-17 83.2
Msa0680900 AT5G25120.1 24.074 432 286 12 19 437 59 461 9.70e-17 82.8
Msa0680900 AT5G24950.1 26.582 237 166 2 207 437 230 464 1.55e-16 82.4
Msa0680900 AT1G64940.1 27.778 180 127 3 256 434 299 476 1.59e-16 82.4
Msa0680900 AT3G48280.1 29.508 183 128 1 261 443 281 462 1.60e-16 82.4
Msa0680900 AT3G25180.1 26.437 261 168 8 201 451 246 492 2.67e-16 81.6
Msa0680900 AT4G37340.1 27.459 244 158 6 206 442 233 464 2.93e-16 81.6
Msa0680900 AT5G45340.1 28.846 260 158 8 211 462 219 459 4.28e-16 80.9
Msa0680900 AT4G19230.1 27.734 256 159 8 213 460 220 457 4.97e-16 80.5
Msa0680900 AT1G33730.1 28.800 250 163 6 202 441 97 341 5.33e-16 79.7
Msa0680900 AT1G33730.2 28.800 250 163 6 202 441 97 341 5.33e-16 79.7
Msa0680900 AT1G64950.1 28.804 184 128 3 256 438 298 479 5.49e-16 80.9
Msa0680900 AT2G46950.1 25.455 440 272 15 37 460 166 565 6.08e-16 80.9
Msa0680900 AT5G67310.1 28.099 242 153 6 202 434 238 467 8.07e-16 80.1
Msa0680900 AT3G14650.1 22.294 462 278 16 5 433 68 481 1.71e-15 79.3
Msa0680900 AT5G35715.1 25.157 318 216 9 131 434 92 401 1.73e-15 79.0
Msa0680900 AT3G14690.1 22.588 425 264 14 34 437 105 485 2.93e-15 78.6
Msa0680900 AT3G14690.2 22.588 425 264 14 34 437 140 520 3.37e-15 78.6
Msa0680900 AT1G16410.1 25.887 282 171 9 209 455 259 537 3.85e-15 78.2
Msa0680900 AT2G23190.1 28.099 242 152 6 206 439 278 505 5.85e-15 77.8
Msa0680900 AT5G42590.1 28.685 251 170 5 207 449 230 479 5.90e-15 77.4
Msa0680900 AT3G14630.1 22.963 405 270 11 38 433 106 477 6.75e-15 77.4
Msa0680900 AT2G45550.1 30.000 190 124 5 253 441 296 477 7.78e-15 77.0
Msa0680900 AT3G26210.1 21.751 377 246 11 76 434 120 465 8.36e-15 77.0
Msa0680900 AT3G14630.2 22.963 405 270 11 38 433 161 532 8.51e-15 77.0
Msa0680900 AT1G16400.1 25.410 244 167 6 207 437 256 497 1.03e-14 77.0
Msa0680900 AT3G53280.1 23.326 433 280 12 22 434 61 461 1.13e-14 76.6
Msa0680900 AT3G20100.1 22.993 274 184 6 200 449 221 491 2.62e-14 75.5
Msa0680900 AT1G64930.1 27.419 186 130 3 256 438 297 480 2.68e-14 75.5
Msa0680900 AT3G20935.1 27.099 262 166 8 194 439 55 307 3.66e-14 73.9
Msa0680900 AT3G48320.1 28.108 185 132 1 261 445 282 465 4.95e-14 74.7
Msa0680900 AT2G45570.1 24.065 428 297 13 22 441 71 478 5.46e-14 74.3
Msa0680900 AT1G33720.1 25.794 252 168 8 202 441 233 477 7.24e-14 73.9
Msa0680900 AT1G33720.4 25.794 252 168 8 202 441 101 345 7.24e-14 73.6
Msa0680900 AT1G33720.3 25.794 252 168 8 202 441 101 345 7.24e-14 73.6
Msa0680900 AT1G33720.5 25.794 252 168 8 202 441 101 345 7.24e-14 73.6
Msa0680900 AT4G13770.1 26.087 230 153 7 221 441 248 469 7.41e-14 73.9
Msa0680900 AT2G12190.1 27.957 186 129 3 256 438 298 481 9.30e-14 73.9
Msa0680900 AT4G15380.1 27.184 206 136 5 242 436 272 474 9.66e-14 73.6
Msa0680900 AT3G20940.1 25.764 229 156 5 222 439 257 482 1.06e-13 73.6
Msa0680900 AT3G26190.1 23.823 361 237 11 76 422 117 453 1.15e-13 73.6
Msa0680900 AT3G48290.1 26.106 226 158 3 216 434 232 455 1.42e-13 73.2
Msa0680900 AT5G36110.1 26.275 255 177 8 216 466 230 477 1.85e-13 72.8
Msa0680900 AT3G44250.1 23.733 434 280 12 21 434 60 462 2.15e-13 72.8
Msa0680900 AT1G13110.1 24.672 381 247 13 76 441 121 476 2.38e-13 72.4
Msa0680900 AT2G45560.1 29.891 184 120 4 253 434 296 472 2.65e-13 72.4
Msa0680900 AT3G26200.1 22.482 427 295 10 21 434 60 463 2.84e-13 72.4
Msa0680900 AT3G03470.1 27.461 193 125 4 257 438 292 480 3.24e-13 72.0
Msa0680900 AT2G46960.2 22.676 441 287 14 37 460 109 512 3.44e-13 72.0
Msa0680900 AT3G26330.1 22.250 400 265 10 71 453 115 485 4.88e-13 71.6
Msa0680900 AT5G09970.1 28.796 191 126 5 253 434 314 503 5.07e-13 71.6
Msa0680900 AT5G25900.1 25.292 257 181 5 198 452 247 494 5.21e-13 71.2
Msa0680900 AT2G23220.1 27.119 236 152 5 211 439 254 476 5.27e-13 71.2
Msa0680900 AT3G26270.1 24.066 241 171 4 206 437 233 470 5.35e-13 71.2
Msa0680900 AT2G42850.1 26.772 254 171 8 215 462 236 480 5.78e-13 71.2
Msa0680900 AT5G47990.1 25.523 239 160 6 215 439 247 481 5.92e-13 71.2
Msa0680900 AT4G19230.2 27.511 229 142 7 213 433 220 432 8.08e-13 70.9
Msa0680900 AT1G01190.2 27.074 229 152 8 213 434 283 503 8.75e-13 70.9
Msa0680900 AT4G36220.1 29.143 175 118 5 261 433 309 479 8.89e-13 70.9
Msa0680900 AT1G01190.1 27.074 229 152 8 213 434 278 498 9.23e-13 70.9
Msa0680900 AT2G46960.1 25.556 270 172 8 199 460 148 396 1.14e-12 70.1
Msa0680900 AT3G48290.2 34.167 120 79 0 315 434 362 481 1.24e-12 70.1
Msa0680900 AT1G13100.1 21.716 373 254 9 76 434 114 462 1.37e-12 70.1
Msa0680900 AT3G20110.1 25.481 208 148 5 260 466 297 498 2.88e-12 68.9
Msa0680900 AT3G20140.1 23.569 297 213 7 150 439 188 477 2.98e-12 68.9
Msa0680900 AT5G45340.2 28.947 228 143 7 211 433 219 432 3.45e-12 68.6
Msa0680900 AT1G33720.2 28.261 184 124 4 260 441 193 370 3.46e-12 68.6
Msa0680900 AT1G50560.1 24.167 240 165 7 212 439 251 485 3.59e-12 68.9
Msa0680900 AT3G26290.2 27.642 246 158 6 231 461 269 509 3.94e-12 68.6
Msa0680900 AT2G42250.1 29.245 212 133 6 241 438 274 482 4.35e-12 68.6
Msa0680900 AT5G05260.2 22.646 393 266 12 61 433 114 488 4.36e-12 68.6
Msa0680900 AT3G26290.1 27.642 246 158 6 231 461 256 496 5.01e-12 68.2
Msa0680900 AT3G53300.1 24.458 323 212 9 131 434 154 463 6.11e-12 68.2
Msa0680900 AT1G74540.1 26.609 233 165 4 228 458 251 479 6.54e-12 67.8
Msa0680900 AT4G12330.1 22.314 242 178 4 202 437 244 481 6.88e-12 67.8
Msa0680900 AT1G74550.1 26.961 204 143 4 258 458 273 473 7.12e-12 67.8
Msa0680900 AT5G24960.1 26.407 231 151 3 211 437 250 465 9.91e-12 67.4
Msa0680900 AT4G12320.1 22.581 248 179 6 201 437 236 481 1.15e-11 67.4
Msa0680900 AT4G22690.1 21.968 437 287 13 18 434 114 516 1.69e-11 66.6
Msa0680900 AT1G13080.2 27.586 174 125 1 261 434 176 348 2.12e-11 65.9
Msa0680900 AT3G61880.1 26.009 223 150 9 221 434 280 496 2.15e-11 66.2
Msa0680900 AT4G37430.1 23.292 322 209 9 130 434 160 460 2.17e-11 66.2
Msa0680900 AT4G37410.1 24.335 263 181 9 211 466 237 488 2.42e-11 66.2
Msa0680900 AT1G13080.1 25.000 200 141 2 243 434 268 466 2.55e-11 66.2
Msa0680900 AT3G61880.2 26.009 223 150 9 221 434 280 496 2.66e-11 66.2
Msa0680900 AT3G19270.2 26.718 262 149 8 217 455 223 464 4.33e-11 65.5
Msa0680900 AT1G13090.2 20.541 370 259 9 76 434 117 462 4.79e-11 65.1
Msa0680900 AT4G22710.1 21.968 437 287 13 18 434 83 485 5.39e-11 65.1

Find 88 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAAATGCATTATCTTAA+TGG 0.182669 4_4:+40616768 Msa0680900:CDS
GGATACTTAAAAGGACATTT+TGG 0.225017 4_4:-40617002 None:intergenic
GTAGAAAACTGTTTACCTTT+AGG 0.234206 4_4:-40615976 None:intergenic
TAGAAAACTGTTTACCTTTA+GGG 0.235315 4_4:-40615975 None:intergenic
ACAATCCTTGGTGATCTTCT+TGG 0.252655 4_4:+40615997 Msa0680900:CDS
TAACGGCGTCACCGTTAATA+TGG 0.274716 4_4:+40616394 Msa0680900:CDS
TTCTGAGGTATTGTCTGCTT+TGG 0.275148 4_4:-40616205 None:intergenic
AGCGGGGTCGAGGGTTTGTT+TGG 0.284201 4_4:+40617034 Msa0680900:CDS
ACAATCCATGTTCATGTCTT+AGG 0.295926 4_4:+40615889 Msa0680900:CDS
CATTTGGGGACCCGATTGTT+TGG 0.298506 4_4:+40616938 Msa0680900:CDS
AGTAAAACGGTTTGATGTTC+GGG 0.302804 4_4:+40617103 Msa0680900:CDS
CTCGTTTAGAGGTGGTTTGC+CGG 0.310479 4_4:+40617172 Msa0680900:CDS
ATGAAACGTTTCTTCATCAT+TGG 0.312962 4_4:+40616420 Msa0680900:CDS
TTCAGCTCAACGAGCATTAA+CGG 0.327080 4_4:+40616377 Msa0680900:CDS
CGTTTCATCTTCCATATTAA+CGG 0.330602 4_4:-40616405 None:intergenic
CTCAGAAGAAGACGTTCTTT+TGG 0.337144 4_4:+40616221 Msa0680900:CDS
GGGTCGGATGGAGAACATTT+GGG 0.338668 4_4:+40616923 Msa0680900:CDS
AACATTTGTAAATTCTCGTT+TGG 0.348101 4_4:+40616279 Msa0680900:CDS
CGGTTTGATGTTCGGGTTGT+TGG 0.351401 4_4:+40617110 Msa0680900:CDS
TCGGCAACAGAAGCTATAAA+AGG 0.353487 4_4:-40616153 None:intergenic
TGGGTCGGATGGAGAACATT+TGG 0.366720 4_4:+40616922 Msa0680900:CDS
GGTTTAACTGCCTCGTTTAG+AGG 0.374139 4_4:+40617161 Msa0680900:CDS
ACCGTTGCTTCCGCGTTAAC+CGG 0.376488 4_4:+40616639 Msa0680900:CDS
TAGTAAAACGGTTTGATGTT+CGG 0.378116 4_4:+40617102 Msa0680900:CDS
CGGTTTAAATTCCAAACAAT+CGG 0.382230 4_4:-40616949 None:intergenic
GTTCTTTCATAAATCTTAAC+CGG 0.383823 4_4:-40617191 None:intergenic
AATTAAAATAGTAAACGATT+TGG 0.386462 4_4:+40616467 Msa0680900:CDS
TCTAAACGAGGCAGTTAAAC+CGG 0.397860 4_4:-40617159 None:intergenic
GCAAACTGCGGCTCTTGGTT+CGG 0.401671 4_4:-40617134 None:intergenic
CACTTATCACCCGTATGCTA+TGG 0.403576 4_4:+40616902 Msa0680900:CDS
GCGGGGTCGAGGGTTTGTTT+GGG 0.410361 4_4:+40617035 Msa0680900:CDS
CTTGAGCCGGGTTCATTACT+CGG 0.418598 4_4:-40616722 None:intergenic
AACTTTGAATCAAATTGAAC+CGG 0.419157 4_4:-40616822 None:intergenic
CGATTGTTTGGAATTTAAAC+CGG 0.422822 4_4:+40616950 Msa0680900:CDS
TGAAACGTTTCTTCATCATT+GGG 0.435659 4_4:+40616421 Msa0680900:CDS
AAAGTAGCGCACTCTTGAGC+CGG 0.450891 4_4:-40616735 None:intergenic
TAATAAATTCTTAAACCTTG+TGG 0.457155 4_4:+40615828 Msa0680900:CDS
GCATTTGCAAGATTTGAAAC+AGG 0.463179 4_4:-40616333 None:intergenic
CGGGTGCAAACTGCGGCTCT+TGG 0.471945 4_4:-40617139 None:intergenic
TCGTTGCTTCATTAGTAAAA+CGG 0.474372 4_4:+40617090 Msa0680900:CDS
TCAACGTTGACGGTCATTCG+TGG 0.480435 4_4:+40616031 Msa0680900:CDS
ACCGGTTAACGCGGAAGCAA+CGG 0.488090 4_4:-40616640 None:intergenic
AAACTTTCTTAACCATGAGT+TGG 0.488575 4_4:+40615803 None:intergenic
GTCGAGGGTTTGTTTGGGAA+AGG 0.490821 4_4:+40617040 Msa0680900:CDS
CAAAGACGAGAAATTGAGAA+TGG 0.495739 4_4:+40616507 Msa0680900:CDS
CTTCTTAAAGAATCACCAAC+AGG 0.496377 4_4:+40615865 Msa0680900:CDS
TGATTCAAAGTTCGCTCTTG+AGG 0.496939 4_4:+40616833 Msa0680900:CDS
CAAGAGCCGCAGTTTGCACC+CGG 0.497130 4_4:+40617140 Msa0680900:CDS
CTTGGTGATCTTCTTGGCCG+TGG 0.498898 4_4:+40616003 Msa0680900:CDS
TAAACCGGAGAGATGGTTGA+AGG 0.507528 4_4:+40616965 Msa0680900:CDS
GGTTTAAATTCCAAACAATC+GGG 0.512909 4_4:-40616948 None:intergenic
TCCATCCGACCCATAGCATA+CGG 0.514140 4_4:-40616912 None:intergenic
GAGCGATTCATGAGAGTATG+AGG 0.518184 4_4:+40616790 Msa0680900:CDS
CCATCCTTCAACCATCTCTC+CGG 0.528233 4_4:-40616969 None:intergenic
CCCGTATGCTATGGGTCGGA+TGG 0.528361 4_4:+40616911 Msa0680900:CDS
CGTGGTATCTTCAACGTTGA+CGG 0.529228 4_4:+40616021 Msa0680900:CDS
ACTTATCACCCGTATGCTAT+GGG 0.533505 4_4:+40616903 Msa0680900:CDS
AATTTCAACAACTACCCTAA+AGG 0.540258 4_4:+40615961 Msa0680900:CDS
AGTGATTCGTTCCTACGCTA+TGG 0.548477 4_4:+40616095 Msa0680900:CDS
AGATTTGAAACAGGAAGTGA+TGG 0.556552 4_4:-40616324 None:intergenic
TGGAATTTAAACCGGAGAGA+TGG 0.561605 4_4:+40616958 Msa0680900:CDS
AAGTAGCGCACTCTTGAGCC+GGG 0.563898 4_4:-40616734 None:intergenic
CAAAAGAACGTCTTCTTCTG+AGG 0.577949 4_4:-40616220 None:intergenic
ATTGTCGAAGAACCCGAAAG+TGG 0.578643 4_4:+40616674 Msa0680900:CDS
CTAAACGAGGCAGTTAAACC+GGG 0.580288 4_4:-40617158 None:intergenic
TTAACTGCCTCGTTTAGAGG+TGG 0.582614 4_4:+40617164 Msa0680900:CDS
TTTGAATCAAATTGAACCGG+TGG 0.584985 4_4:-40616819 None:intergenic
GAGGATGACGTGTTACCAGA+TGG 0.591293 4_4:+40616852 Msa0680900:CDS
GAATTTATTAGACCAACTCA+TGG 0.591820 4_4:-40615815 None:intergenic
CCATCCGACCCATAGCATAC+GGG 0.592232 4_4:-40616911 None:intergenic
GGTCGGATGGAGAACATTTG+GGG 0.602556 4_4:+40616924 Msa0680900:CDS
CCGGAGAGATGGTTGAAGGA+TGG 0.605968 4_4:+40616969 Msa0680900:CDS
ATCACCCGTATGCTATGGGT+CGG 0.609704 4_4:+40616907 Msa0680900:CDS
AGTGATGGAACAAGACAACA+TGG 0.634539 4_4:-40616309 None:intergenic
GTTAAACCGGGTGCAAACTG+CGG 0.639076 4_4:-40617146 None:intergenic
GTCGAAGAACCCGAAAGTGG+AGG 0.642090 4_4:+40616677 Msa0680900:CDS
AACCTCAAATCCAGAAAACG+TGG 0.643222 4_4:+40615921 Msa0680900:CDS
TGAACATGGATTGTTCCTGT+TGG 0.644979 4_4:-40615880 None:intergenic
AAAATGGCATCTCTTGAACT+CGG 0.657903 4_4:+40616066 Msa0680900:CDS
CGGCAAACCACCTCTAAACG+AGG 0.661985 4_4:-40617171 None:intergenic
TGTTACCTAAGACATGAACA+TGG 0.670896 4_4:-40615894 None:intergenic
GATGACAAGTTCCATAGCGT+AGG 0.676576 4_4:-40616106 None:intergenic
TCATCGAAGAAATCAAAACA+AGG 0.681346 4_4:+40616124 Msa0680900:CDS
GTTAGACCGAGTAATGAACC+CGG 0.697136 4_4:+40616716 Msa0680900:CDS
CGTCAACGTTGAAGATACCA+CGG 0.716028 4_4:-40616020 None:intergenic
GATGTGTGTAGTAATCCACA+AGG 0.726385 4_4:-40615843 None:intergenic
CACGGCCAAGAAGATCACCA+AGG 0.761755 4_4:-40616002 None:intergenic
GTGATGGAACAAGACAACAT+GGG 0.769475 4_4:-40616308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATAGTAAACGATT+TGG + chr4_4:40616467-40616486 Msa0680900:CDS 15.0%
!! AATTAAAATAGTAAACGATT+TGG + chr4_4:40616467-40616486 Msa0680900:CDS 15.0%
!! TAATAAATTCTTAAACCTTG+TGG + chr4_4:40615828-40615847 Msa0680900:CDS 20.0%
!! CGACAATAAAATAAAAAAAC+CGG - chr4_4:40616661-40616680 None:intergenic 20.0%
!!! TTTTTTATAAAAGTTCCATC+TGG - chr4_4:40616870-40616889 None:intergenic 20.0%
!!! AGATGGAACTTTTATAAAAA+AGG + chr4_4:40616869-40616888 Msa0680900:CDS 20.0%
!!! GATGGAACTTTTATAAAAAA+GGG + chr4_4:40616870-40616889 Msa0680900:CDS 20.0%
!!! ATGGAACTTTTATAAAAAAG+GGG + chr4_4:40616871-40616890 Msa0680900:CDS 20.0%
!! TAATAAATTCTTAAACCTTG+TGG + chr4_4:40615828-40615847 Msa0680900:CDS 20.0%
!! CGACAATAAAATAAAAAAAC+CGG - chr4_4:40616661-40616680 None:intergenic 20.0%
!!! TTTTTTATAAAAGTTCCATC+TGG - chr4_4:40616870-40616889 None:intergenic 20.0%
!!! AGATGGAACTTTTATAAAAA+AGG + chr4_4:40616869-40616888 Msa0680900:CDS 20.0%
!!! GATGGAACTTTTATAAAAAA+GGG + chr4_4:40616870-40616889 Msa0680900:CDS 20.0%
!!! ATGGAACTTTTATAAAAAAG+GGG + chr4_4:40616871-40616890 Msa0680900:CDS 20.0%
! TAGAAAACTGTTTACCTTTA+GGG - chr4_4:40615978-40615997 None:intergenic 25.0%
! AACATTTGTAAATTCTCGTT+TGG + chr4_4:40616279-40616298 Msa0680900:CDS 25.0%
! AACTTTGAATCAAATTGAAC+CGG - chr4_4:40616825-40616844 None:intergenic 25.0%
!!! AAAATGTCCTTTTAAGTATC+CGG + chr4_4:40617004-40617023 Msa0680900:CDS 25.0%
! GTTCTTTCATAAATCTTAAC+CGG - chr4_4:40617194-40617213 None:intergenic 25.0%
! TAGAAAACTGTTTACCTTTA+GGG - chr4_4:40615978-40615997 None:intergenic 25.0%
! AACATTTGTAAATTCTCGTT+TGG + chr4_4:40616279-40616298 Msa0680900:CDS 25.0%
! AACTTTGAATCAAATTGAAC+CGG - chr4_4:40616825-40616844 None:intergenic 25.0%
!!! AAAATGTCCTTTTAAGTATC+CGG + chr4_4:40617004-40617023 Msa0680900:CDS 25.0%
! GTTCTTTCATAAATCTTAAC+CGG - chr4_4:40617194-40617213 None:intergenic 25.0%
AATTTCAACAACTACCCTAA+AGG + chr4_4:40615961-40615980 Msa0680900:CDS 30.0%
GTAGAAAACTGTTTACCTTT+AGG - chr4_4:40615979-40615998 None:intergenic 30.0%
! AAACAGTTTTCTACAATCCT+TGG + chr4_4:40615985-40616004 Msa0680900:CDS 30.0%
TCATCGAAGAAATCAAAACA+AGG + chr4_4:40616124-40616143 Msa0680900:CDS 30.0%
CGTTTCATCTTCCATATTAA+CGG - chr4_4:40616408-40616427 None:intergenic 30.0%
ATGAAACGTTTCTTCATCAT+TGG + chr4_4:40616420-40616439 Msa0680900:CDS 30.0%
TGAAACGTTTCTTCATCATT+GGG + chr4_4:40616421-40616440 Msa0680900:CDS 30.0%
! AGATCTTCTATCTCGTTTTA+TGG + chr4_4:40616545-40616564 Msa0680900:CDS 30.0%
! GATCTTCTATCTCGTTTTAT+GGG + chr4_4:40616546-40616565 Msa0680900:CDS 30.0%
!!! TGTTGTTAGTTTTCTGTTAG+CGG + chr4_4:40616608-40616627 Msa0680900:CDS 30.0%
AATAAAAAAACCGGTTAACG+CGG - chr4_4:40616652-40616671 None:intergenic 30.0%
CGTGAAATGCATTATCTTAA+TGG + chr4_4:40616768-40616787 Msa0680900:CDS 30.0%
! CTTTTATAAAAAAGGGGAGT+CGG + chr4_4:40616877-40616896 Msa0680900:CDS 30.0%
! TTTTATAAAAAAGGGGAGTC+GGG + chr4_4:40616878-40616897 Msa0680900:CDS 30.0%
GGTTTAAATTCCAAACAATC+GGG - chr4_4:40616951-40616970 None:intergenic 30.0%
CGGTTTAAATTCCAAACAAT+CGG - chr4_4:40616952-40616971 None:intergenic 30.0%
! CGATTGTTTGGAATTTAAAC+CGG + chr4_4:40616950-40616969 Msa0680900:CDS 30.0%
! GGATACTTAAAAGGACATTT+TGG - chr4_4:40617005-40617024 None:intergenic 30.0%
TGAAAAACCGGATACTTAAA+AGG - chr4_4:40617014-40617033 None:intergenic 30.0%
TCGTTGCTTCATTAGTAAAA+CGG + chr4_4:40617090-40617109 Msa0680900:CDS 30.0%
TAGTAAAACGGTTTGATGTT+CGG + chr4_4:40617102-40617121 Msa0680900:CDS 30.0%
AATTTCAACAACTACCCTAA+AGG + chr4_4:40615961-40615980 Msa0680900:CDS 30.0%
GTAGAAAACTGTTTACCTTT+AGG - chr4_4:40615979-40615998 None:intergenic 30.0%
! AAACAGTTTTCTACAATCCT+TGG + chr4_4:40615985-40616004 Msa0680900:CDS 30.0%
TCATCGAAGAAATCAAAACA+AGG + chr4_4:40616124-40616143 Msa0680900:CDS 30.0%
CGTTTCATCTTCCATATTAA+CGG - chr4_4:40616408-40616427 None:intergenic 30.0%
ATGAAACGTTTCTTCATCAT+TGG + chr4_4:40616420-40616439 Msa0680900:CDS 30.0%
TGAAACGTTTCTTCATCATT+GGG + chr4_4:40616421-40616440 Msa0680900:CDS 30.0%
! AGATCTTCTATCTCGTTTTA+TGG + chr4_4:40616545-40616564 Msa0680900:CDS 30.0%
! GATCTTCTATCTCGTTTTAT+GGG + chr4_4:40616546-40616565 Msa0680900:CDS 30.0%
!!! TGTTGTTAGTTTTCTGTTAG+CGG + chr4_4:40616608-40616627 Msa0680900:CDS 30.0%
AATAAAAAAACCGGTTAACG+CGG - chr4_4:40616652-40616671 None:intergenic 30.0%
CGTGAAATGCATTATCTTAA+TGG + chr4_4:40616768-40616787 Msa0680900:CDS 30.0%
! CTTTTATAAAAAAGGGGAGT+CGG + chr4_4:40616877-40616896 Msa0680900:CDS 30.0%
! TTTTATAAAAAAGGGGAGTC+GGG + chr4_4:40616878-40616897 Msa0680900:CDS 30.0%
GGTTTAAATTCCAAACAATC+GGG - chr4_4:40616951-40616970 None:intergenic 30.0%
CGGTTTAAATTCCAAACAAT+CGG - chr4_4:40616952-40616971 None:intergenic 30.0%
! CGATTGTTTGGAATTTAAAC+CGG + chr4_4:40616950-40616969 Msa0680900:CDS 30.0%
! GGATACTTAAAAGGACATTT+TGG - chr4_4:40617005-40617024 None:intergenic 30.0%
TGAAAAACCGGATACTTAAA+AGG - chr4_4:40617014-40617033 None:intergenic 30.0%
TCGTTGCTTCATTAGTAAAA+CGG + chr4_4:40617090-40617109 Msa0680900:CDS 30.0%
TAGTAAAACGGTTTGATGTT+CGG + chr4_4:40617102-40617121 Msa0680900:CDS 30.0%
CTTCTTAAAGAATCACCAAC+AGG + chr4_4:40615865-40615884 Msa0680900:CDS 35.0%
ACAATCCATGTTCATGTCTT+AGG + chr4_4:40615889-40615908 Msa0680900:CDS 35.0%
TGTTACCTAAGACATGAACA+TGG - chr4_4:40615897-40615916 None:intergenic 35.0%
! AGTATATACTCCACGTTTTC+TGG - chr4_4:40615934-40615953 None:intergenic 35.0%
GTGGAAGTTTCAACGAAAAA+TGG + chr4_4:40616050-40616069 Msa0680900:CDS 35.0%
AAAATGGCATCTCTTGAACT+CGG + chr4_4:40616066-40616085 Msa0680900:CDS 35.0%
! AGATTTGAAACAGGAAGTGA+TGG - chr4_4:40616327-40616346 None:intergenic 35.0%
! GCATTTGCAAGATTTGAAAC+AGG - chr4_4:40616336-40616355 None:intergenic 35.0%
CAAAGACGAGAAATTGAGAA+TGG + chr4_4:40616507-40616526 Msa0680900:CDS 35.0%
!!! GTTGTTAGTTTTCTGTTAGC+GGG + chr4_4:40616609-40616628 Msa0680900:CDS 35.0%
!!! GAATTTTTTCCTCCACTTTC+GGG - chr4_4:40616689-40616708 None:intergenic 35.0%
!!! CGAATTTTTTCCTCCACTTT+CGG - chr4_4:40616690-40616709 None:intergenic 35.0%
CGAAAGTGGAGGAAAAAATT+CGG + chr4_4:40616688-40616707 Msa0680900:CDS 35.0%
GAAAGTGGAGGAAAAAATTC+GGG + chr4_4:40616689-40616708 Msa0680900:CDS 35.0%
TTTGAATCAAATTGAACCGG+TGG - chr4_4:40616822-40616841 None:intergenic 35.0%
!!! TAAGTATCCGGTTTTTCAAG+CGG + chr4_4:40617016-40617035 Msa0680900:CDS 35.0%
AGTAAAACGGTTTGATGTTC+GGG + chr4_4:40617103-40617122 Msa0680900:CDS 35.0%
CTTCTTAAAGAATCACCAAC+AGG + chr4_4:40615865-40615884 Msa0680900:CDS 35.0%
ACAATCCATGTTCATGTCTT+AGG + chr4_4:40615889-40615908 Msa0680900:CDS 35.0%
TGTTACCTAAGACATGAACA+TGG - chr4_4:40615897-40615916 None:intergenic 35.0%
! AGTATATACTCCACGTTTTC+TGG - chr4_4:40615934-40615953 None:intergenic 35.0%
GTGGAAGTTTCAACGAAAAA+TGG + chr4_4:40616050-40616069 Msa0680900:CDS 35.0%
AAAATGGCATCTCTTGAACT+CGG + chr4_4:40616066-40616085 Msa0680900:CDS 35.0%
! AGATTTGAAACAGGAAGTGA+TGG - chr4_4:40616327-40616346 None:intergenic 35.0%
! GCATTTGCAAGATTTGAAAC+AGG - chr4_4:40616336-40616355 None:intergenic 35.0%
CAAAGACGAGAAATTGAGAA+TGG + chr4_4:40616507-40616526 Msa0680900:CDS 35.0%
!!! GTTGTTAGTTTTCTGTTAGC+GGG + chr4_4:40616609-40616628 Msa0680900:CDS 35.0%
!!! GAATTTTTTCCTCCACTTTC+GGG - chr4_4:40616689-40616708 None:intergenic 35.0%
!!! CGAATTTTTTCCTCCACTTT+CGG - chr4_4:40616690-40616709 None:intergenic 35.0%
CGAAAGTGGAGGAAAAAATT+CGG + chr4_4:40616688-40616707 Msa0680900:CDS 35.0%
GAAAGTGGAGGAAAAAATTC+GGG + chr4_4:40616689-40616708 Msa0680900:CDS 35.0%
TTTGAATCAAATTGAACCGG+TGG - chr4_4:40616822-40616841 None:intergenic 35.0%
!!! TAAGTATCCGGTTTTTCAAG+CGG + chr4_4:40617016-40617035 Msa0680900:CDS 35.0%
AGTAAAACGGTTTGATGTTC+GGG + chr4_4:40617103-40617122 Msa0680900:CDS 35.0%
GATGTGTGTAGTAATCCACA+AGG - chr4_4:40615846-40615865 None:intergenic 40.0%
! TGAACATGGATTGTTCCTGT+TGG - chr4_4:40615883-40615902 None:intergenic 40.0%
AACCTCAAATCCAGAAAACG+TGG + chr4_4:40615921-40615940 Msa0680900:CDS 40.0%
! ACAATCCTTGGTGATCTTCT+TGG + chr4_4:40615997-40616016 Msa0680900:CDS 40.0%
TCGGCAACAGAAGCTATAAA+AGG - chr4_4:40616156-40616175 None:intergenic 40.0%
!!! AGCATTCGCGGTTTTTTTCT+CGG - chr4_4:40616175-40616194 None:intergenic 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG - chr4_4:40616208-40616227 None:intergenic 40.0%
CAAAAGAACGTCTTCTTCTG+AGG - chr4_4:40616223-40616242 None:intergenic 40.0%
! CTCAGAAGAAGACGTTCTTT+TGG + chr4_4:40616221-40616240 Msa0680900:CDS 40.0%
! GTGATGGAACAAGACAACAT+GGG - chr4_4:40616311-40616330 None:intergenic 40.0%
! AGTGATGGAACAAGACAACA+TGG - chr4_4:40616312-40616331 None:intergenic 40.0%
TTCAGCTCAACGAGCATTAA+CGG + chr4_4:40616377-40616396 Msa0680900:CDS 40.0%
TGATTCAAAGTTCGCTCTTG+AGG + chr4_4:40616833-40616852 Msa0680900:CDS 40.0%
ACTTATCACCCGTATGCTAT+GGG + chr4_4:40616903-40616922 Msa0680900:CDS 40.0%
TGGAATTTAAACCGGAGAGA+TGG + chr4_4:40616958-40616977 Msa0680900:CDS 40.0%
!!! AAGTATCCGGTTTTTCAAGC+GGG + chr4_4:40617017-40617036 Msa0680900:CDS 40.0%
TCTAAACGAGGCAGTTAAAC+CGG - chr4_4:40617162-40617181 None:intergenic 40.0%
GATGTGTGTAGTAATCCACA+AGG - chr4_4:40615846-40615865 None:intergenic 40.0%
! TGAACATGGATTGTTCCTGT+TGG - chr4_4:40615883-40615902 None:intergenic 40.0%
AACCTCAAATCCAGAAAACG+TGG + chr4_4:40615921-40615940 Msa0680900:CDS 40.0%
! ACAATCCTTGGTGATCTTCT+TGG + chr4_4:40615997-40616016 Msa0680900:CDS 40.0%
TCGGCAACAGAAGCTATAAA+AGG - chr4_4:40616156-40616175 None:intergenic 40.0%
!!! AGCATTCGCGGTTTTTTTCT+CGG - chr4_4:40616175-40616194 None:intergenic 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG - chr4_4:40616208-40616227 None:intergenic 40.0%
CAAAAGAACGTCTTCTTCTG+AGG - chr4_4:40616223-40616242 None:intergenic 40.0%
! CTCAGAAGAAGACGTTCTTT+TGG + chr4_4:40616221-40616240 Msa0680900:CDS 40.0%
! GTGATGGAACAAGACAACAT+GGG - chr4_4:40616311-40616330 None:intergenic 40.0%
! AGTGATGGAACAAGACAACA+TGG - chr4_4:40616312-40616331 None:intergenic 40.0%
TTCAGCTCAACGAGCATTAA+CGG + chr4_4:40616377-40616396 Msa0680900:CDS 40.0%
TGATTCAAAGTTCGCTCTTG+AGG + chr4_4:40616833-40616852 Msa0680900:CDS 40.0%
ACTTATCACCCGTATGCTAT+GGG + chr4_4:40616903-40616922 Msa0680900:CDS 40.0%
TGGAATTTAAACCGGAGAGA+TGG + chr4_4:40616958-40616977 Msa0680900:CDS 40.0%
!!! AAGTATCCGGTTTTTCAAGC+GGG + chr4_4:40617017-40617036 Msa0680900:CDS 40.0%
TCTAAACGAGGCAGTTAAAC+CGG - chr4_4:40617162-40617181 None:intergenic 40.0%
! CTCCACGTTTTCTGGATTTG+AGG - chr4_4:40615926-40615945 None:intergenic 45.0%
CGTCAACGTTGAAGATACCA+CGG - chr4_4:40616023-40616042 None:intergenic 45.0%
CGTGGTATCTTCAACGTTGA+CGG + chr4_4:40616021-40616040 Msa0680900:CDS 45.0%
AGTGATTCGTTCCTACGCTA+TGG + chr4_4:40616095-40616114 Msa0680900:CDS 45.0%
GATGACAAGTTCCATAGCGT+AGG - chr4_4:40616109-40616128 None:intergenic 45.0%
! GGATTTTGTGTGAGCATTCG+CGG - chr4_4:40616187-40616206 None:intergenic 45.0%
TAACGGCGTCACCGTTAATA+TGG + chr4_4:40616394-40616413 Msa0680900:CDS 45.0%
ATTGTCGAAGAACCCGAAAG+TGG + chr4_4:40616674-40616693 Msa0680900:CDS 45.0%
GTTAGACCGAGTAATGAACC+CGG + chr4_4:40616716-40616735 Msa0680900:CDS 45.0%
! GAGCGATTCATGAGAGTATG+AGG + chr4_4:40616790-40616809 Msa0680900:CDS 45.0%
!! GAGTATGAGGCTTTTTCCAC+CGG + chr4_4:40616803-40616822 Msa0680900:CDS 45.0%
CACTTATCACCCGTATGCTA+TGG + chr4_4:40616902-40616921 Msa0680900:CDS 45.0%
TAAACCGGAGAGATGGTTGA+AGG + chr4_4:40616965-40616984 Msa0680900:CDS 45.0%
!!! AGTATCCGGTTTTTCAAGCG+GGG + chr4_4:40617018-40617037 Msa0680900:CDS 45.0%
CTAAACGAGGCAGTTAAACC+GGG - chr4_4:40617161-40617180 None:intergenic 45.0%
GGTTTAACTGCCTCGTTTAG+AGG + chr4_4:40617161-40617180 Msa0680900:CDS 45.0%
TTAACTGCCTCGTTTAGAGG+TGG + chr4_4:40617164-40617183 Msa0680900:CDS 45.0%
! CTCCACGTTTTCTGGATTTG+AGG - chr4_4:40615926-40615945 None:intergenic 45.0%
CGTCAACGTTGAAGATACCA+CGG - chr4_4:40616023-40616042 None:intergenic 45.0%
CGTGGTATCTTCAACGTTGA+CGG + chr4_4:40616021-40616040 Msa0680900:CDS 45.0%
AGTGATTCGTTCCTACGCTA+TGG + chr4_4:40616095-40616114 Msa0680900:CDS 45.0%
GATGACAAGTTCCATAGCGT+AGG - chr4_4:40616109-40616128 None:intergenic 45.0%
! GGATTTTGTGTGAGCATTCG+CGG - chr4_4:40616187-40616206 None:intergenic 45.0%
TAACGGCGTCACCGTTAATA+TGG + chr4_4:40616394-40616413 Msa0680900:CDS 45.0%
ATTGTCGAAGAACCCGAAAG+TGG + chr4_4:40616674-40616693 Msa0680900:CDS 45.0%
GTTAGACCGAGTAATGAACC+CGG + chr4_4:40616716-40616735 Msa0680900:CDS 45.0%
! GAGCGATTCATGAGAGTATG+AGG + chr4_4:40616790-40616809 Msa0680900:CDS 45.0%
!! GAGTATGAGGCTTTTTCCAC+CGG + chr4_4:40616803-40616822 Msa0680900:CDS 45.0%
CACTTATCACCCGTATGCTA+TGG + chr4_4:40616902-40616921 Msa0680900:CDS 45.0%
TAAACCGGAGAGATGGTTGA+AGG + chr4_4:40616965-40616984 Msa0680900:CDS 45.0%
!!! AGTATCCGGTTTTTCAAGCG+GGG + chr4_4:40617018-40617037 Msa0680900:CDS 45.0%
CTAAACGAGGCAGTTAAACC+GGG - chr4_4:40617161-40617180 None:intergenic 45.0%
GGTTTAACTGCCTCGTTTAG+AGG + chr4_4:40617161-40617180 Msa0680900:CDS 45.0%
TTAACTGCCTCGTTTAGAGG+TGG + chr4_4:40617164-40617183 Msa0680900:CDS 45.0%
TCAACGTTGACGGTCATTCG+TGG + chr4_4:40616031-40616050 Msa0680900:CDS 50.0%
CTTGAGCCGGGTTCATTACT+CGG - chr4_4:40616725-40616744 None:intergenic 50.0%
AAAGTAGCGCACTCTTGAGC+CGG - chr4_4:40616738-40616757 None:intergenic 50.0%
GAGGATGACGTGTTACCAGA+TGG + chr4_4:40616852-40616871 Msa0680900:CDS 50.0%
ATCACCCGTATGCTATGGGT+CGG + chr4_4:40616907-40616926 Msa0680900:CDS 50.0%
TCCATCCGACCCATAGCATA+CGG - chr4_4:40616915-40616934 None:intergenic 50.0%
TGGGTCGGATGGAGAACATT+TGG + chr4_4:40616922-40616941 Msa0680900:CDS 50.0%
GGGTCGGATGGAGAACATTT+GGG + chr4_4:40616923-40616942 Msa0680900:CDS 50.0%
GGTCGGATGGAGAACATTTG+GGG + chr4_4:40616924-40616943 Msa0680900:CDS 50.0%
CATTTGGGGACCCGATTGTT+TGG + chr4_4:40616938-40616957 Msa0680900:CDS 50.0%
CCATCCTTCAACCATCTCTC+CGG - chr4_4:40616972-40616991 None:intergenic 50.0%
! GTCGAGGGTTTGTTTGGGAA+AGG + chr4_4:40617040-40617059 Msa0680900:CDS 50.0%
!! CGGTTTGATGTTCGGGTTGT+TGG + chr4_4:40617110-40617129 Msa0680900:CDS 50.0%
GTTAAACCGGGTGCAAACTG+CGG - chr4_4:40617149-40617168 None:intergenic 50.0%
! CTCGTTTAGAGGTGGTTTGC+CGG + chr4_4:40617172-40617191 Msa0680900:CDS 50.0%
TCAACGTTGACGGTCATTCG+TGG + chr4_4:40616031-40616050 Msa0680900:CDS 50.0%
CTTGAGCCGGGTTCATTACT+CGG - chr4_4:40616725-40616744 None:intergenic 50.0%
AAAGTAGCGCACTCTTGAGC+CGG - chr4_4:40616738-40616757 None:intergenic 50.0%
GAGGATGACGTGTTACCAGA+TGG + chr4_4:40616852-40616871 Msa0680900:CDS 50.0%
ATCACCCGTATGCTATGGGT+CGG + chr4_4:40616907-40616926 Msa0680900:CDS 50.0%
TCCATCCGACCCATAGCATA+CGG - chr4_4:40616915-40616934 None:intergenic 50.0%
TGGGTCGGATGGAGAACATT+TGG + chr4_4:40616922-40616941 Msa0680900:CDS 50.0%
GGGTCGGATGGAGAACATTT+GGG + chr4_4:40616923-40616942 Msa0680900:CDS 50.0%
GGTCGGATGGAGAACATTTG+GGG + chr4_4:40616924-40616943 Msa0680900:CDS 50.0%
CATTTGGGGACCCGATTGTT+TGG + chr4_4:40616938-40616957 Msa0680900:CDS 50.0%
CCATCCTTCAACCATCTCTC+CGG - chr4_4:40616972-40616991 None:intergenic 50.0%
! GTCGAGGGTTTGTTTGGGAA+AGG + chr4_4:40617040-40617059 Msa0680900:CDS 50.0%
!! CGGTTTGATGTTCGGGTTGT+TGG + chr4_4:40617110-40617129 Msa0680900:CDS 50.0%
GTTAAACCGGGTGCAAACTG+CGG - chr4_4:40617149-40617168 None:intergenic 50.0%
! CTCGTTTAGAGGTGGTTTGC+CGG + chr4_4:40617172-40617191 Msa0680900:CDS 50.0%
CACGGCCAAGAAGATCACCA+AGG - chr4_4:40616005-40616024 None:intergenic 55.0%
! CTTGGTGATCTTCTTGGCCG+TGG + chr4_4:40616003-40616022 Msa0680900:CDS 55.0%
ACCGTTGCTTCCGCGTTAAC+CGG + chr4_4:40616639-40616658 Msa0680900:CDS 55.0%
ACCGGTTAACGCGGAAGCAA+CGG - chr4_4:40616643-40616662 None:intergenic 55.0%
GTCGAAGAACCCGAAAGTGG+AGG + chr4_4:40616677-40616696 Msa0680900:CDS 55.0%
AAGTAGCGCACTCTTGAGCC+GGG - chr4_4:40616737-40616756 None:intergenic 55.0%
CCATCCGACCCATAGCATAC+GGG - chr4_4:40616914-40616933 None:intergenic 55.0%
CCGGAGAGATGGTTGAAGGA+TGG + chr4_4:40616969-40616988 Msa0680900:CDS 55.0%
CTCGACCCCGCTTGAAAAAC+CGG - chr4_4:40617026-40617045 None:intergenic 55.0%
!!! GGTTTTTCAAGCGGGGTCGA+GGG + chr4_4:40617025-40617044 Msa0680900:CDS 55.0%
GCAAACTGCGGCTCTTGGTT+CGG - chr4_4:40617137-40617156 None:intergenic 55.0%
CGGCAAACCACCTCTAAACG+AGG - chr4_4:40617174-40617193 None:intergenic 55.0%
CACGGCCAAGAAGATCACCA+AGG - chr4_4:40616005-40616024 None:intergenic 55.0%
! CTTGGTGATCTTCTTGGCCG+TGG + chr4_4:40616003-40616022 Msa0680900:CDS 55.0%
ACCGTTGCTTCCGCGTTAAC+CGG + chr4_4:40616639-40616658 Msa0680900:CDS 55.0%
ACCGGTTAACGCGGAAGCAA+CGG - chr4_4:40616643-40616662 None:intergenic 55.0%
GTCGAAGAACCCGAAAGTGG+AGG + chr4_4:40616677-40616696 Msa0680900:CDS 55.0%
AAGTAGCGCACTCTTGAGCC+GGG - chr4_4:40616737-40616756 None:intergenic 55.0%
CCATCCGACCCATAGCATAC+GGG - chr4_4:40616914-40616933 None:intergenic 55.0%
CCGGAGAGATGGTTGAAGGA+TGG + chr4_4:40616969-40616988 Msa0680900:CDS 55.0%
CTCGACCCCGCTTGAAAAAC+CGG - chr4_4:40617026-40617045 None:intergenic 55.0%
!!! GGTTTTTCAAGCGGGGTCGA+GGG + chr4_4:40617025-40617044 Msa0680900:CDS 55.0%
GCAAACTGCGGCTCTTGGTT+CGG - chr4_4:40617137-40617156 None:intergenic 55.0%
CGGCAAACCACCTCTAAACG+AGG - chr4_4:40617174-40617193 None:intergenic 55.0%
CCCGTATGCTATGGGTCGGA+TGG + chr4_4:40616911-40616930 Msa0680900:CDS 60.0%
!!! CGGTTTTTCAAGCGGGGTCG+AGG + chr4_4:40617024-40617043 Msa0680900:CDS 60.0%
! AGCGGGGTCGAGGGTTTGTT+TGG + chr4_4:40617034-40617053 Msa0680900:CDS 60.0%
! GCGGGGTCGAGGGTTTGTTT+GGG + chr4_4:40617035-40617054 Msa0680900:CDS 60.0%
CAAGAGCCGCAGTTTGCACC+CGG + chr4_4:40617140-40617159 Msa0680900:CDS 60.0%
CCCGTATGCTATGGGTCGGA+TGG + chr4_4:40616911-40616930 Msa0680900:CDS 60.0%
!!! CGGTTTTTCAAGCGGGGTCG+AGG + chr4_4:40617024-40617043 Msa0680900:CDS 60.0%
! AGCGGGGTCGAGGGTTTGTT+TGG + chr4_4:40617034-40617053 Msa0680900:CDS 60.0%
! GCGGGGTCGAGGGTTTGTTT+GGG + chr4_4:40617035-40617054 Msa0680900:CDS 60.0%
CAAGAGCCGCAGTTTGCACC+CGG + chr4_4:40617140-40617159 Msa0680900:CDS 60.0%
CGGGTGCAAACTGCGGCTCT+TGG - chr4_4:40617142-40617161 None:intergenic 65.0%
CGGGTGCAAACTGCGGCTCT+TGG - chr4_4:40617142-40617161 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 40615817 40617217 40615817 ID=Msa0680900;Name=Msa0680900
chr4_4 mRNA 40615817 40617217 40615817 ID=Msa0680900-mRNA-1;Parent=Msa0680900;Name=Msa0680900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|466
chr4_4 exon 40615817 40617217 40615817 ID=Msa0680900-mRNA-1:exon:9603;Parent=Msa0680900-mRNA-1
chr4_4 CDS 40615817 40617217 40615817 ID=Msa0680900-mRNA-1:cds;Parent=Msa0680900-mRNA-1
Gene Sequence

>Msa0680900

ATGAGTTGGTCTAATAAATTCTTAAACCTTGTGGATTACTACACACATCTTCTTAAAGAATCACCAACAGGAACAATCCATGTTCATGTCTTAGGTAACACAATAACCTCAAATCCAGAAAACGTGGAGTATATACTCAAAACAAATTTCAACAACTACCCTAAAGGTAAACAGTTTTCTACAATCCTTGGTGATCTTCTTGGCCGTGGTATCTTCAACGTTGACGGTCATTCGTGGAAGTTTCAACGAAAAATGGCATCTCTTGAACTCGGTAGCGTAGTGATTCGTTCCTACGCTATGGAACTTGTCATCGAAGAAATCAAAACAAGGTTGCTTCCTTTTATAGCTTCTGTTGCCGAGAAAAAAACCGCGAATGCTCACACAAAATCCAAAGCAGACAATACCTCAGAAGAAGACGTTCTTTTGGACATGCAAGACATTCTTAGAAGATTCTCGTTCGACAACATTTGTAAATTCTCGTTTGGATTAGACCCATGTTGTCTTGTTCCATCACTTCCTGTTTCAAATCTTGCAAATGCTTTTGATCTCTCTTCAACACTTTCAGCTCAACGAGCATTAACGGCGTCACCGTTAATATGGAAGATGAAACGTTTCTTCATCATTGGGTCAGAGAAAAAGTTGAAAGAAGCAATTAAAATAGTAAACGATTTGGCAAATGAGATGATAAAACAAAGACGAGAAATTGAGAATGGAGTTGACTCACGAAAAGATCTTCTATCTCGTTTTATGGGTGCTTTGAATTCAAATGACGACGAATATTTAAGAGATATTGTTGTTAGTTTTCTGTTAGCGGGTCGTGATACCGTTGCTTCCGCGTTAACCGGTTTTTTTATTTTATTGTCGAAGAACCCGAAAGTGGAGGAAAAAATTCGGGTTGAGTTAGACCGAGTAATGAACCCGGCTCAAGAGTGCGCTACTTTTGAACAAACGCGTGAAATGCATTATCTTAATGGAGCGATTCATGAGAGTATGAGGCTTTTTCCACCGGTTCAATTTGATTCAAAGTTCGCTCTTGAGGATGACGTGTTACCAGATGGAACTTTTATAAAAAAGGGGAGTCGGGTCACTTATCACCCGTATGCTATGGGTCGGATGGAGAACATTTGGGGACCCGATTGTTTGGAATTTAAACCGGAGAGATGGTTGAAGGATGGTGTGTTTGTTCCAAAATGTCCTTTTAAGTATCCGGTTTTTCAAGCGGGGTCGAGGGTTTGTTTGGGAAAGGAGTTAGCTATTGTAGAGATGAAATCTGTCGTTGCTTCATTAGTAAAACGGTTTGATGTTCGGGTTGTTGGACCGAACCAAGAGCCGCAGTTTGCACCCGGTTTAACTGCCTCGTTTAGAGGTGGTTTGCCGGTTAAGATTTATGAAAGAACATGA
Protein sequence

>Msa0680900

MSWSNKFLNLVDYYTHLLKESPTGTIHVHVLGNTITSNPENVEYILKTNFNNYPKGKQFSTILGDLLGRGIFNVDGHSWKFQRKMASLELGSVVIRSYAMELVIEEIKTRLLPFIASVAEKKTANAHTKSKADNTSEEDVLLDMQDILRRFSFDNICKFSFGLDPCCLVPSLPVSNLANAFDLSSTLSAQRALTASPLIWKMKRFFIIGSEKKLKEAIKIVNDLANEMIKQRREIENGVDSRKDLLSRFMGALNSNDDEYLRDIVVSFLLAGRDTVASALTGFFILLSKNPKVEEKIRVELDRVMNPAQECATFEQTREMHYLNGAIHESMRLFPPVQFDSKFALEDDVLPDGTFIKKGSRVTYHPYAMGRMENIWGPDCLEFKPERWLKDGVFVPKCPFKYPVFQAGSRVCLGKELAIVEMKSVVASLVKRFDVRVVGPNQEPQFAPGLTASFRGGLPVKIYERT*