Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321200 | XP_003627809.2 | 96.957 | 230 | 3 | 1 | 1 | 226 | 516 | 745 | 3.30e-140 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321200 | A4Q377 | 96.957 | 230 | 3 | 1 | 1 | 226 | 516 | 745 | 1.57e-140 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0683050 | Msa1321200 | 0.802948 | 4.403835e-49 | -8.615850e-47 |
| Msa1279780 | Msa1321200 | 0.865440 | 5.895944e-65 | -8.615850e-47 |
| Msa1321190 | Msa1321200 | 0.877806 | 4.676429e-69 | -8.615850e-47 |
| Msa1321200 | Msa1340560 | 0.869791 | 2.376407e-66 | -8.615850e-47 |
| Msa1321200 | Msa1362260 | 0.824820 | 6.561525e-54 | -8.615850e-47 |
| Msa0370820 | Msa1321200 | 0.817791 | 2.745563e-52 | -8.615850e-47 |
| Msa0371180 | Msa1321200 | -0.815755 | 7.857894e-52 | -8.615850e-47 |
| Msa1036880 | Msa1321200 | 0.835285 | 1.833838e-56 | -8.615850e-47 |
| Msa1071040 | Msa1321200 | 0.832482 | 9.219668e-56 | -8.615850e-47 |
| Msa0291960 | Msa1321200 | 0.876124 | 1.790906e-68 | -8.615850e-47 |
| Msa0329930 | Msa1321200 | 0.910511 | 1.726648e-82 | -8.615850e-47 |
| Msa0333220 | Msa1321200 | 0.804198 | 2.423517e-49 | -8.615850e-47 |
| Msa1118440 | Msa1321200 | 0.815171 | 1.059748e-51 | -8.615850e-47 |
| Msa1159030 | Msa1321200 | 0.828761 | 7.512514e-55 | -8.615850e-47 |
| Msa0525030 | Msa1321200 | 0.866391 | 2.951323e-65 | -8.615850e-47 |
| Msa0525060 | Msa1321200 | 0.846661 | 1.887439e-59 | -8.615850e-47 |
| Msa0527980 | Msa1321200 | 0.806627 | 7.504118e-50 | -8.615850e-47 |
| Msa0602200 | Msa1321200 | 0.812220 | 4.729972e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321200 | MtrunA17_Chr8g0352821 | 96.957 | 230 | 3 | 1 | 1 | 226 | 516 | 745 | 3.03e-144 | 420 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 123 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATGCCACAAGGTCATTA+TGG | 0.191289 | 8_4:+26582944 | Msa1321200:CDS |
| TGGCATTCCATGTGGCATTT+GGG | 0.201403 | 8_4:-26581209 | None:intergenic |
| CCTTGAGGATAATTGTTATT+TGG | 0.213044 | 8_4:-26583052 | None:intergenic |
| CTGGCATTCCATGTGGCATT+TGG | 0.229707 | 8_4:-26581210 | None:intergenic |
| AGAAACTACACGAGCTTAAA+TGG | 0.253511 | 8_4:-26584367 | None:intergenic |
| CCACCTTGTGGTCTGTTAAA+TGG | 0.269241 | 8_4:-26583079 | None:intergenic |
| TGTTGTATCTGTGGCATATT+TGG | 0.269826 | 8_4:-26581136 | None:intergenic |
| TAAAGTATGGAACCTCTTAT+AGG | 0.273912 | 8_4:-26584472 | None:intergenic |
| TGGAATGGTTGTTGTTGGTT+GGG | 0.280856 | 8_4:-26581043 | None:intergenic |
| CAATATGTAAAGAATGTTAA+AGG | 0.326430 | 8_4:-26584614 | None:intergenic |
| TTGGAATGGTTGTTGTTGGT+TGG | 0.337956 | 8_4:-26581044 | None:intergenic |
| GGTGGCCCTTGCATATTGTT+TGG | 0.340378 | 8_4:-26583031 | None:intergenic |
| GTGGCCCTTGCATATTGTTT+GGG | 0.354471 | 8_4:-26583030 | None:intergenic |
| GGTCCACCTTGTTGCGAGTT+TGG | 0.359353 | 8_4:-26584290 | None:intergenic |
| CAATGCCACAAGGTCATTAT+GGG | 0.363562 | 8_4:+26582945 | Msa1321200:CDS |
| ATTCCATGTGGCATTTGGGG+GGG | 0.365991 | 8_4:-26581205 | None:intergenic |
| CGTAATGAGGGTACCATTCC+AGG | 0.368362 | 8_4:+26580893 | Msa1321200:CDS |
| CCTGAACTAGAACTAAAGTA+TGG | 0.371837 | 8_4:-26584485 | None:intergenic |
| CCATACTTTAGTTCTAGTTC+AGG | 0.375053 | 8_4:+26584485 | Msa1321200:three_prime_UTR |
| TTTATTCCCTTGCCTATAAG+AGG | 0.379584 | 8_4:+26584460 | Msa1321200:three_prime_UTR |
| GGAATGGTTGTTGTTGGTTG+GGG | 0.383790 | 8_4:-26581042 | None:intergenic |
| CCTTCAGGGGATGCAAGGTA+TGG | 0.387178 | 8_4:+26582916 | Msa1321200:intron |
| GCAACAGCTACAACAACATA+TGG | 0.389621 | 8_4:+26581096 | Msa1321200:CDS |
| CAGCCCCATCCTGGTTCAAT+AGG | 0.396332 | 8_4:+26580977 | Msa1321200:CDS |
| GGCATGAATCAAATGCATTC+AGG | 0.402650 | 8_4:+26582968 | Msa1321200:CDS |
| ACACTCTTCCCATTCCTCTA+TGG | 0.407507 | 8_4:+26581156 | Msa1321200:CDS |
| TCTGTTGGAATGGTTGTTGT+TGG | 0.410088 | 8_4:-26581048 | None:intergenic |
| CCATAATGACCTTGTGGCAT+TGG | 0.412285 | 8_4:-26582944 | None:intergenic |
| GGCATTCCATGTGGCATTTG+GGG | 0.420818 | 8_4:-26581208 | None:intergenic |
| GGGCGGGGCAAATGTTGGTG+AGG | 0.440115 | 8_4:-26581181 | None:intergenic |
| TCTCATCCAATGCCAATTCC+AGG | 0.440931 | 8_4:+26581253 | Msa1321200:CDS |
| CATACCATAGGTCCTGGAAT+TGG | 0.445112 | 8_4:-26581265 | None:intergenic |
| GAAGAGAGGGATGTGGACCC+GGG | 0.448757 | 8_4:-26581015 | None:intergenic |
| GGATTATACCCTTGCATCAT+GGG | 0.449053 | 8_4:-26583109 | None:intergenic |
| TATAGGCAAAATTGCTTCAC+AGG | 0.451917 | 8_4:+26584590 | Msa1321200:three_prime_UTR |
| AGAAGAGAGGGATGTGGACC+CGG | 0.453820 | 8_4:-26581016 | None:intergenic |
| AGGTGCTCCTCCTCTTCCCC+CGG | 0.463870 | 8_4:+26580997 | Msa1321200:CDS |
| TGAGGATAATTGTTATTTGG+TGG | 0.466321 | 8_4:-26583049 | None:intergenic |
| TGCTGTGGATTCTGTTGGAA+TGG | 0.470851 | 8_4:-26581058 | None:intergenic |
| ACATATTATCTTACCTGGTA+AGG | 0.473177 | 8_4:-26583130 | None:intergenic |
| GAATCTGCTGTGGATTCTGT+TGG | 0.474357 | 8_4:-26581063 | None:intergenic |
| TGCGAGTTTGGAGGCATCCC+AGG | 0.479823 | 8_4:-26584278 | None:intergenic |
| GTGAGGGACCATAGAGGAAT+GGG | 0.481425 | 8_4:-26581164 | None:intergenic |
| GGGGTGGGCGGGGCAAATGT+TGG | 0.482232 | 8_4:-26581186 | None:intergenic |
| ATCAAAAGAAGGAATAGGTA+AGG | 0.485683 | 8_4:-26580933 | None:intergenic |
| CAAATGCCACATGGAATGCC+AGG | 0.487705 | 8_4:+26581211 | Msa1321200:CDS |
| CCACCTTGTTGCGAGTTTGG+AGG | 0.490150 | 8_4:-26584287 | None:intergenic |
| AGGATTATACCCTTGCATCA+TGG | 0.490793 | 8_4:-26583110 | None:intergenic |
| CTGCAGTCTGGAAATCAACC+TGG | 0.491136 | 8_4:+26584260 | Msa1321200:intron |
| CTTCAGGGGATGCAAGGTAT+GGG | 0.496938 | 8_4:+26582917 | Msa1321200:intron |
| GACCCATCAAAAGAAGGAAT+AGG | 0.500033 | 8_4:-26580938 | None:intergenic |
| GCATTCCATGTGGCATTTGG+GGG | 0.501367 | 8_4:-26581207 | None:intergenic |
| GAGCAGAAGCAGCCCCATCC+TGG | 0.505538 | 8_4:+26580968 | Msa1321200:CDS |
| CATTCCATGTGGCATTTGGG+GGG | 0.507906 | 8_4:-26581206 | None:intergenic |
| TTGGTTGGGGTTAAGAAGAG+AGG | 0.512447 | 8_4:-26581029 | None:intergenic |
| TAATGACCTTGTGGCATTGG+AGG | 0.521122 | 8_4:-26582941 | None:intergenic |
| AATGCCAATTCCAGGACCTA+TGG | 0.522304 | 8_4:+26581261 | Msa1321200:CDS |
| CTAAACTTATGCTTAAGCTA+TGG | 0.523069 | 8_4:-26584534 | None:intergenic |
| ATAGGTCCTGGAATTGGCAT+TGG | 0.525567 | 8_4:-26581259 | None:intergenic |
| TGCAACTCCAACACCTGGAA+TGG | 0.526692 | 8_4:-26580906 | None:intergenic |
| GTAGGCACTGGTAAAGATCC+TGG | 0.526709 | 8_4:-26581229 | None:intergenic |
| TGAACACATACCATAGGTCC+TGG | 0.526794 | 8_4:-26581271 | None:intergenic |
| TGTAGCTGTTGCTGATGTTG+TGG | 0.528034 | 8_4:-26581085 | None:intergenic |
| TCATTACGAGTCATCAGCCC+AGG | 0.534328 | 8_4:-26580878 | None:intergenic |
| AGCACCTATTGAACCAGGAT+GGG | 0.540481 | 8_4:-26580981 | None:intergenic |
| ATATTTGGAGGCATAGGCAA+AGG | 0.541409 | 8_4:-26581121 | None:intergenic |
| TGGTTGGGGTTAAGAAGAGA+GGG | 0.544344 | 8_4:-26581028 | None:intergenic |
| TTTGTCCTTCAGGGGATGCA+AGG | 0.545282 | 8_4:+26582911 | Msa1321200:intron |
| CACTGAGGCATTTGAGAGTG+TGG | 0.545664 | 8_4:-26584311 | None:intergenic |
| CCTTGAGACCCATCAAAAGA+AGG | 0.550357 | 8_4:-26580944 | None:intergenic |
| GGTGAGGGACCATAGAGGAA+TGG | 0.550912 | 8_4:-26581165 | None:intergenic |
| TGTATCTGTGGCATATTTGG+AGG | 0.553352 | 8_4:-26581133 | None:intergenic |
| ATGGGCATTTGTCCACCTTG+TGG | 0.553643 | 8_4:-26583091 | None:intergenic |
| TGTGGCATATTTGGAGGCAT+AGG | 0.554271 | 8_4:-26581127 | None:intergenic |
| GAGCACCTATTGAACCAGGA+TGG | 0.554767 | 8_4:-26580982 | None:intergenic |
| TGGGCTGATGACTCGTAATG+AGG | 0.555104 | 8_4:+26580880 | Msa1321200:exon |
| GGCGGGGCAAATGTTGGTGA+GGG | 0.556699 | 8_4:-26581180 | None:intergenic |
| GAGGGTACCATTCCAGGTGT+TGG | 0.557098 | 8_4:+26580899 | Msa1321200:CDS |
| ATTGGCATTGGATGAGATGT+AGG | 0.559064 | 8_4:-26581247 | None:intergenic |
| TATGGAACCTCTTATAGGCA+AGG | 0.559683 | 8_4:-26584467 | None:intergenic |
| ATTGTTTGGGAAACCTCCCA+TGG | 0.562798 | 8_4:-26583017 | None:intergenic |
| TACAAGTGGAGGACCACCCA+TGG | 0.567052 | 8_4:+26583000 | Msa1321200:CDS |
| GGACAAATGCCCATGATGCA+AGG | 0.567686 | 8_4:+26583100 | Msa1321200:CDS |
| GGCATTGCAACTCCAACACC+TGG | 0.567940 | 8_4:-26580911 | None:intergenic |
| TGATGTTGTGGAATCTGCTG+TGG | 0.569050 | 8_4:-26581073 | None:intergenic |
| CCAAATAACAATTATCCTCA+AGG | 0.569262 | 8_4:+26583052 | Msa1321200:CDS |
| TTTGGGAAACCTCCCATGGG+TGG | 0.571036 | 8_4:-26583013 | None:intergenic |
| GCACCTATTGAACCAGGATG+GGG | 0.585406 | 8_4:-26580980 | None:intergenic |
| TCAGGATCCTTGTCTACAAG+TGG | 0.587191 | 8_4:+26582986 | Msa1321200:CDS |
| GGTTTCCCAAACAATATGCA+AGG | 0.587595 | 8_4:+26583025 | Msa1321200:CDS |
| ATGGAACCTCTTATAGGCAA+GGG | 0.588791 | 8_4:-26584466 | None:intergenic |
| TATTTGGAGGCATAGGCAAA+GGG | 0.596635 | 8_4:-26581120 | None:intergenic |
| GGGCTGATGACTCGTAATGA+GGG | 0.596956 | 8_4:+26580881 | Msa1321200:exon |
| TCAAAAGAAGGAATAGGTAA+GGG | 0.598527 | 8_4:-26580932 | None:intergenic |
| CTGTTAAATGGAGCACCTTG+AGG | 0.600065 | 8_4:-26583067 | None:intergenic |
| AAGAGAGGGATGTGGACCCG+GGG | 0.600175 | 8_4:-26581014 | None:intergenic |
| GACAAATGCCCATGATGCAA+GGG | 0.603943 | 8_4:+26583101 | Msa1321200:CDS |
| CAACAGCTACAACAACATAT+GGG | 0.604776 | 8_4:+26581097 | Msa1321200:CDS |
| GGGTTAAGAAGAGAGGGATG+TGG | 0.605291 | 8_4:-26581022 | None:intergenic |
| TGGTCCTCCACTTGTAGACA+AGG | 0.615432 | 8_4:-26582993 | None:intergenic |
| GCAAGGGTATAATCCTTACC+AGG | 0.616773 | 8_4:+26583117 | Msa1321200:CDS |
| GGAGGAGCACCTATTGAACC+AGG | 0.619421 | 8_4:-26580986 | None:intergenic |
| AATGCCACAAGGTCATTATG+GGG | 0.622296 | 8_4:+26582946 | Msa1321200:CDS |
| ATGCCTCCAAACTCGCAACA+AGG | 0.628170 | 8_4:+26584284 | Msa1321200:CDS |
| TGCAGTCTGGAAATCAACCT+GGG | 0.631487 | 8_4:+26584261 | Msa1321200:intron |
| ACAAGTGGAGGACCACCCAT+GGG | 0.644315 | 8_4:+26583001 | Msa1321200:CDS |
| CATTACGAGTCATCAGCCCA+GGG | 0.646331 | 8_4:-26580877 | None:intergenic |
| GGATCCTTGTCTACAAGTGG+AGG | 0.647236 | 8_4:+26582989 | Msa1321200:CDS |
| TTGTTTGGGAAACCTCCCAT+GGG | 0.648643 | 8_4:-26583016 | None:intergenic |
| TGGGAAGAGTGTTGTATCTG+TGG | 0.650591 | 8_4:-26581145 | None:intergenic |
| GTTTCCCAAACAATATGCAA+GGG | 0.666661 | 8_4:+26583026 | Msa1321200:CDS |
| ATGGGTCCTCCAATGCCACA+AGG | 0.671824 | 8_4:+26582935 | Msa1321200:CDS |
| ATTGGATGAGATGTAGGCAC+TGG | 0.676519 | 8_4:-26581241 | None:intergenic |
| AGAGAGGGATGTGGACCCGG+GGG | 0.679430 | 8_4:-26581013 | None:intergenic |
| GCAATCTCTTTAATTCACTG+AGG | 0.680376 | 8_4:-26584326 | None:intergenic |
| GCTCCATTTAACAGACCACA+AGG | 0.686639 | 8_4:+26583076 | Msa1321200:CDS |
| CCTCCAAACTCGCAACAAGG+TGG | 0.686904 | 8_4:+26584287 | Msa1321200:CDS |
| AAAGATCCTGGCATTCCATG+TGG | 0.687872 | 8_4:-26581217 | None:intergenic |
| AGTGGAGGACCACCCATGGG+AGG | 0.688885 | 8_4:+26583004 | Msa1321200:CDS |
| ATGCCACAAGGTCATTATGG+GGG | 0.689869 | 8_4:+26582947 | Msa1321200:CDS |
| ATGTTGGTGAGGGACCATAG+AGG | 0.717039 | 8_4:-26581170 | None:intergenic |
| CCATTTAACAGACCACAAGG+TGG | 0.722787 | 8_4:+26583079 | Msa1321200:CDS |
| ATTACGAGTCATCAGCCCAG+GGG | 0.743534 | 8_4:-26580876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTCACTAAATATAA+AGG | + | chr8_4:26582328-26582347 | Msa1321200:intron | 10.0% |
| !!! | ATAATTTTCACTAAATATAA+AGG | + | chr8_4:26582673-26582692 | Msa1321200:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTAACAG+TGG | - | chr8_4:26581541-26581560 | None:intergenic | 15.0% |
| !! | AGATCATATAATTATTTGAT+TGG | - | chr8_4:26581834-26581853 | None:intergenic | 15.0% |
| !! | ACTAAATATAAAGGATAATT+AGG | + | chr8_4:26582337-26582356 | Msa1321200:intron | 15.0% |
| !! | ATAATTTATGATAAAAGAAG+AGG | - | chr8_4:26583234-26583253 | None:intergenic | 15.0% |
| !!! | GGTTTTCTTTAAAATATAAG+CGG | + | chr8_4:26581654-26581673 | Msa1321200:intron | 20.0% |
| !!! | TAAATAATTTGTCAAGAGAT+AGG | + | chr8_4:26581972-26581991 | Msa1321200:intron | 20.0% |
| !!! | TTTAACTTGAATTTTGTAGT+TGG | + | chr8_4:26582178-26582197 | Msa1321200:intron | 20.0% |
| !! | TTAACAAATAATTGTGATGT+AGG | + | chr8_4:26582231-26582250 | Msa1321200:intron | 20.0% |
| !!! | TTATCTATTTGACTTCAATT+TGG | - | chr8_4:26582407-26582426 | None:intergenic | 20.0% |
| !!! | TTTAACTTCAATTTTGTAGT+TGG | + | chr8_4:26582519-26582538 | Msa1321200:intron | 20.0% |
| !! | AAAAGAAACTATGCATATTA+GGG | - | chr8_4:26582298-26582317 | None:intergenic | 20.0% |
| !! | TAAAAGAAACTATGCATATT+AGG | - | chr8_4:26582299-26582318 | None:intergenic | 20.0% |
| !!! | TTATCTATTTGACTTCAATT+TGG | - | chr8_4:26582407-26582426 | None:intergenic | 20.0% |
| !!! | TAATAAAAAGTGTCAAGAAA+TGG | + | chr8_4:26583539-26583558 | Msa1321200:intron | 20.0% |
| !! | ACAATATTAAACCTATTCTT+TGG | - | chr8_4:26583642-26583661 | None:intergenic | 20.0% |
| !!! | TGAATTACATTTTTGTAATC+CGG | + | chr8_4:26583686-26583705 | Msa1321200:intron | 20.0% |
| !! | TTTATGCTGGAAAATAAAAA+TGG | - | chr8_4:26583980-26583999 | None:intergenic | 20.0% |
| !! | GTTCTTGCATAATATAAAAT+AGG | + | chr8_4:26584077-26584096 | Msa1321200:intron | 20.0% |
| !!! | ATGATTAATTGATTTGTTCT+TGG | + | chr8_4:26584188-26584207 | Msa1321200:intron | 20.0% |
| !!! | ACTTCAAAAAGGTATAAATA+GGG | - | chr8_4:26584395-26584414 | None:intergenic | 20.0% |
| !!! | AACTTCAAAAAGGTATAAAT+AGG | - | chr8_4:26584396-26584415 | None:intergenic | 20.0% |
| !!! | CTGCTTTTGTAAAAAAATAT+AGG | + | chr8_4:26584573-26584592 | Msa1321200:three_prime_UTR | 20.0% |
| !! | CAATATGTAAAGAATGTTAA+AGG | - | chr8_4:26584617-26584636 | None:intergenic | 20.0% |
| ! | ATTAACATGGTGAAATTATC+TGG | + | chr8_4:26581323-26581342 | Msa1321200:intron | 25.0% |
| ! | CATAAAGAGATGCTAAAATA+AGG | - | chr8_4:26581578-26581597 | None:intergenic | 25.0% |
| !!! | TTGAGCTATTTATTTTACTG+TGG | + | chr8_4:26581633-26581652 | Msa1321200:intron | 25.0% |
| ! | AATTCACACCATCATTAAAA+GGG | + | chr8_4:26581791-26581810 | Msa1321200:intron | 25.0% |
| !! | AGTTTCAATCAATTTTCATG+AGG | + | chr8_4:26581918-26581937 | Msa1321200:intron | 25.0% |
| ! | TAATTAGGTGAAACAAAATC+TGG | + | chr8_4:26582352-26582371 | Msa1321200:intron | 25.0% |
| ! | TTGACAAATAATTGTGATGT+AGG | + | chr8_4:26582571-26582590 | Msa1321200:intron | 25.0% |
| !! | TTTGTAAGTTGAAACCTATT+TGG | + | chr8_4:26583200-26583219 | Msa1321200:intron | 25.0% |
| !! | TTGTAAGTTGAAACCTATTT+GGG | + | chr8_4:26583201-26583220 | Msa1321200:intron | 25.0% |
| ! | TATAAAGAGAAAGTGGAAAT+AGG | - | chr8_4:26583350-26583369 | None:intergenic | 25.0% |
| ! | TGTGAAATATAAAGAGAAAG+TGG | - | chr8_4:26583357-26583376 | None:intergenic | 25.0% |
| !! | TAGGAGTATGCATTTATATT+TGG | + | chr8_4:26583411-26583430 | Msa1321200:intron | 25.0% |
| ! | AGAATAGGTTTAATATTGTG+TGG | + | chr8_4:26583643-26583662 | Msa1321200:intron | 25.0% |
| ! | TTAATATTGTGTGGAAACTT+AGG | + | chr8_4:26583652-26583671 | Msa1321200:intron | 25.0% |
| ! | TAATATTGTGTGGAAACTTA+GGG | + | chr8_4:26583653-26583672 | Msa1321200:intron | 25.0% |
| !!! | AAGAGGTAATTTTTTTATGC+TGG | - | chr8_4:26583993-26584012 | None:intergenic | 25.0% |
| ! | GCAGATTAAAAACTTCAAAA+AGG | - | chr8_4:26584406-26584425 | None:intergenic | 25.0% |
| ! | TTTCCCATAACAAAAATTTC+TGG | - | chr8_4:26584430-26584449 | None:intergenic | 25.0% |
| TCAAAAGAAGGAATAGGTAA+GGG | - | chr8_4:26580935-26580954 | None:intergenic | 30.0% | |
| ATCAAAAGAAGGAATAGGTA+AGG | - | chr8_4:26580936-26580955 | None:intergenic | 30.0% | |
| ! | TTACCTATTCCTTCTTTTGA+TGG | + | chr8_4:26580935-26580954 | Msa1321200:CDS | 30.0% |
| ! | TACCTATTCCTTCTTTTGAT+GGG | + | chr8_4:26580936-26580955 | Msa1321200:CDS | 30.0% |
| !! | TTGTTTGAGTTGTGTATATG+TGG | + | chr8_4:26581372-26581391 | Msa1321200:intron | 30.0% |
| !! | TGTTTGAGTTGTGTATATGT+GGG | + | chr8_4:26581373-26581392 | Msa1321200:intron | 30.0% |
| ! | AGTTGTAACTTGAAGTCTTT+TGG | + | chr8_4:26581485-26581504 | Msa1321200:intron | 30.0% |
| AATAAATAGCTCAACTTAGC+TGG | - | chr8_4:26581627-26581646 | None:intergenic | 30.0% | |
| CAATTCACACCATCATTAAA+AGG | + | chr8_4:26581790-26581809 | Msa1321200:intron | 30.0% | |
| TTAGAGCATATTTACTTGAG+TGG | - | chr8_4:26582481-26582500 | None:intergenic | 30.0% | |
| !!! | GTTTTTAGTAATGAGAGAGT+TGG | + | chr8_4:26582593-26582612 | Msa1321200:intron | 30.0% |
| ! | TTAACAGATAGTGGTTGATA+GGG | + | chr8_4:26582846-26582865 | Msa1321200:intron | 30.0% |
| ! | ACCAATTAATTTTGTCCTTC+AGG | + | chr8_4:26582901-26582920 | Msa1321200:intron | 30.0% |
| ! | CCAATTAATTTTGTCCTTCA+GGG | + | chr8_4:26582902-26582921 | Msa1321200:intron | 30.0% |
| ! | CAATTAATTTTGTCCTTCAG+GGG | + | chr8_4:26582903-26582922 | Msa1321200:intron | 30.0% |
| !! | TGAGGATAATTGTTATTTGG+TGG | - | chr8_4:26583052-26583071 | None:intergenic | 30.0% |
| ! | CCTTGAGGATAATTGTTATT+TGG | - | chr8_4:26583055-26583074 | None:intergenic | 30.0% |
| CCAAATAACAATTATCCTCA+AGG | + | chr8_4:26583052-26583071 | Msa1321200:CDS | 30.0% | |
| ACATATTATCTTACCTGGTA+AGG | - | chr8_4:26583133-26583152 | None:intergenic | 30.0% | |
| AAGCAACATATTATCTTACC+TGG | - | chr8_4:26583138-26583157 | None:intergenic | 30.0% | |
| TGATACCATAACACAGTTTA+AGG | - | chr8_4:26583263-26583282 | None:intergenic | 30.0% | |
| GAACATGCTATATGAAAAAG+TGG | - | chr8_4:26583439-26583458 | None:intergenic | 30.0% | |
| CAAAACAGAAACGAAATGAA+AGG | - | chr8_4:26583488-26583507 | None:intergenic | 30.0% | |
| CAGTAAGAAATTGAGACAAA+TGG | - | chr8_4:26583722-26583741 | None:intergenic | 30.0% | |
| ACTGAACAAAACAGTAACAA+TGG | + | chr8_4:26583867-26583886 | Msa1321200:intron | 30.0% | |
| TCTTAACATGCTATCCTAAT+TGG | + | chr8_4:26584109-26584128 | Msa1321200:intron | 30.0% | |
| ! | GATTTGTTCTTGGAAGTTTA+AGG | + | chr8_4:26584198-26584217 | Msa1321200:intron | 30.0% |
| !! | AGTTTAAGGTCCAATTTTGA+AGG | + | chr8_4:26584212-26584231 | Msa1321200:intron | 30.0% |
| !! | GTTTAAGGTCCAATTTTGAA+GGG | + | chr8_4:26584213-26584232 | Msa1321200:intron | 30.0% |
| GAATTAGTTCCCTTCAAAAT+TGG | - | chr8_4:26584225-26584244 | None:intergenic | 30.0% | |
| ! | ATTTTACTTATACTGCAGTC+TGG | + | chr8_4:26584248-26584267 | Msa1321200:intron | 30.0% |
| ! | TGCTCCAGAAATTTTTGTTA+TGG | + | chr8_4:26584423-26584442 | Msa1321200:three_prime_UTR | 30.0% |
| !! | GCTCCAGAAATTTTTGTTAT+GGG | + | chr8_4:26584424-26584443 | Msa1321200:three_prime_UTR | 30.0% |
| TAAAGTATGGAACCTCTTAT+AGG | - | chr8_4:26584475-26584494 | None:intergenic | 30.0% | |
| CTAAACTTATGCTTAAGCTA+TGG | - | chr8_4:26584537-26584556 | None:intergenic | 30.0% | |
| CAACAGCTACAACAACATAT+GGG | + | chr8_4:26581097-26581116 | Msa1321200:CDS | 35.0% | |
| TGTTGTATCTGTGGCATATT+TGG | - | chr8_4:26581139-26581158 | None:intergenic | 35.0% | |
| GATCATTGAACACATACCAT+AGG | - | chr8_4:26581280-26581299 | None:intergenic | 35.0% | |
| AACATGGTGAAATTATCTGG+AGG | + | chr8_4:26581326-26581345 | Msa1321200:intron | 35.0% | |
| !! | GTTTGAGTTGTGTATATGTG+GGG | + | chr8_4:26581374-26581393 | Msa1321200:intron | 35.0% |
| !! | TTTGAGTTGTGTATATGTGG+GGG | + | chr8_4:26581375-26581394 | Msa1321200:intron | 35.0% |
| ! | CTTCAAGTTACAACTATCAG+AGG | - | chr8_4:26581480-26581499 | None:intergenic | 35.0% |
| ! | GTAACTTGAAGTCTTTTGGA+AGG | + | chr8_4:26581489-26581508 | Msa1321200:intron | 35.0% |
| TATGTTATTCGACCTCTCTT+AGG | + | chr8_4:26581594-26581613 | Msa1321200:intron | 35.0% | |
| ! | TACAGAGACCCTTTTAATGA+TGG | - | chr8_4:26581802-26581821 | None:intergenic | 35.0% |
| AAGAGAATAGCTCTCCTATT+TGG | + | chr8_4:26581858-26581877 | Msa1321200:intron | 35.0% | |
| GTGTAGATTGTCTGTGTATT+GGG | - | chr8_4:26581887-26581906 | None:intergenic | 35.0% | |
| TGTGTAGATTGTCTGTGTAT+TGG | - | chr8_4:26581888-26581907 | None:intergenic | 35.0% | |
| ATAAATTGAACCTCTTGCTG+TGG | + | chr8_4:26582152-26582171 | Msa1321200:intron | 35.0% | |
| !!! | GTTTTTAGCAATGAGAGAGT+AGG | + | chr8_4:26582253-26582272 | Msa1321200:intron | 35.0% |
| CAAATAGATAAACCCAACAC+TGG | + | chr8_4:26582416-26582435 | Msa1321200:intron | 35.0% | |
| GAAAAAAAACCTGCAATGCA+TGG | - | chr8_4:26582619-26582638 | None:intergenic | 35.0% | |
| AGAAACTATGCATATTAGGG+AGG | - | chr8_4:26582641-26582660 | None:intergenic | 35.0% | |
| TTAGAGCACATTTACTTGAG+TGG | - | chr8_4:26582825-26582844 | None:intergenic | 35.0% | |
| TGCTCTAACTTAACAGATAG+TGG | + | chr8_4:26582493-26582512 | Msa1321200:intron | 35.0% | |
| ! | CTTAACAGATAGTGGTTGAT+AGG | + | chr8_4:26582845-26582864 | Msa1321200:intron | 35.0% |
| CCCTGAAGGACAAAATTAAT+TGG | - | chr8_4:26582905-26582924 | None:intergenic | 35.0% | |
| GTTTCCCAAACAATATGCAA+GGG | + | chr8_4:26583026-26583045 | Msa1321200:CDS | 35.0% | |
| AAGAGGATCAAAACCCAAAT+AGG | - | chr8_4:26583217-26583236 | None:intergenic | 35.0% | |
| CTTCTCCTTAAACTGTGTTA+TGG | + | chr8_4:26583255-26583274 | Msa1321200:intron | 35.0% | |
| AGAGAAAGTGGAAATAGGAA+GGG | - | chr8_4:26583345-26583364 | None:intergenic | 35.0% | |
| AAGAGAAAGTGGAAATAGGA+AGG | - | chr8_4:26583346-26583365 | None:intergenic | 35.0% | |
| ATTTCACAAGAGATGTAGCT+TGG | + | chr8_4:26583369-26583388 | Msa1321200:intron | 35.0% | |
| GACAAATGGTAAAACATGTC+CGG | - | chr8_4:26583708-26583727 | None:intergenic | 35.0% | |
| !! | GCGTTTGAGTTGCTAAAAAA+CGG | + | chr8_4:26583790-26583809 | Msa1321200:intron | 35.0% |
| !! | CGTTTGAGTTGCTAAAAAAC+GGG | + | chr8_4:26583791-26583810 | Msa1321200:intron | 35.0% |
| ! | TCATGGTTTAGTGATGGAAA+AGG | - | chr8_4:26583912-26583931 | None:intergenic | 35.0% |
| !! | AGTAAGTACTGGTACAAGAT+AGG | - | chr8_4:26584031-26584050 | None:intergenic | 35.0% |
| TCAGCAGCATATTACCAATT+AGG | - | chr8_4:26584126-26584145 | None:intergenic | 35.0% | |
| GCAATCTCTTTAATTCACTG+AGG | - | chr8_4:26584329-26584348 | None:intergenic | 35.0% | |
| AGAAACTACACGAGCTTAAA+TGG | - | chr8_4:26584370-26584389 | None:intergenic | 35.0% | |
| TTTATTCCCTTGCCTATAAG+AGG | + | chr8_4:26584460-26584479 | Msa1321200:three_prime_UTR | 35.0% | |
| CCTGAACTAGAACTAAAGTA+TGG | - | chr8_4:26584488-26584507 | None:intergenic | 35.0% | |
| !! | CCATACTTTAGTTCTAGTTC+AGG | + | chr8_4:26584485-26584504 | Msa1321200:three_prime_UTR | 35.0% |
| TATAGGCAAAATTGCTTCAC+AGG | + | chr8_4:26584590-26584609 | Msa1321200:three_prime_UTR | 35.0% | |
| GACCCATCAAAAGAAGGAAT+AGG | - | chr8_4:26580941-26580960 | None:intergenic | 40.0% | |
| !! | CTTCTTTTGATGGGTCTCAA+GGG | + | chr8_4:26580945-26580964 | Msa1321200:CDS | 40.0% |
| !! | TTCTTTTGATGGGTCTCAAG+GGG | + | chr8_4:26580946-26580965 | Msa1321200:CDS | 40.0% |
| ! | TGGAATGGTTGTTGTTGGTT+GGG | - | chr8_4:26581046-26581065 | None:intergenic | 40.0% |
| ! | TTGGAATGGTTGTTGTTGGT+TGG | - | chr8_4:26581047-26581066 | None:intergenic | 40.0% |
| TCTGTTGGAATGGTTGTTGT+TGG | - | chr8_4:26581051-26581070 | None:intergenic | 40.0% | |
| GCAACAGCTACAACAACATA+TGG | + | chr8_4:26581096-26581115 | Msa1321200:CDS | 40.0% | |
| ! | TATTTGGAGGCATAGGCAAA+GGG | - | chr8_4:26581123-26581142 | None:intergenic | 40.0% |
| ! | ATATTTGGAGGCATAGGCAA+AGG | - | chr8_4:26581124-26581143 | None:intergenic | 40.0% |
| TGTATCTGTGGCATATTTGG+AGG | - | chr8_4:26581136-26581155 | None:intergenic | 40.0% | |
| ! | ATTGGCATTGGATGAGATGT+AGG | - | chr8_4:26581250-26581269 | None:intergenic | 40.0% |
| ATGGTGAAATTATCTGGAGG+CGG | + | chr8_4:26581329-26581348 | Msa1321200:intron | 40.0% | |
| AACAATCTAACGCTTGAGGT+AGG | - | chr8_4:26581357-26581376 | None:intergenic | 40.0% | |
| CTCAAACAATCTAACGCTTG+AGG | - | chr8_4:26581361-26581380 | None:intergenic | 40.0% | |
| ! | TTGAGTTGTGTATATGTGGG+GGG | + | chr8_4:26581376-26581395 | Msa1321200:intron | 40.0% |
| !! | CTTGAAGTCTTTTGGAAGGA+AGG | + | chr8_4:26581493-26581512 | Msa1321200:intron | 40.0% |
| ! | GAAGGTGTAGAATATCCATG+TGG | + | chr8_4:26581511-26581530 | Msa1321200:intron | 40.0% |
| GTGTAGAATATCCATGTGGT+TGG | + | chr8_4:26581515-26581534 | Msa1321200:intron | 40.0% | |
| ACAGCAGTTACAGAAAGAGA+TGG | - | chr8_4:26581744-26581763 | None:intergenic | 40.0% | |
| TGTGTATTGGGCTACCAAAT+AGG | - | chr8_4:26581875-26581894 | None:intergenic | 40.0% | |
| TAGGTTTCTTGATGCACACA+CGG | + | chr8_4:26581991-26582010 | Msa1321200:intron | 40.0% | |
| TGTAGTTGTAGTTGTTGCAC+TGG | + | chr8_4:26582039-26582058 | Msa1321200:intron | 40.0% | |
| !! | TTTGTAGTTGGTGTCGTACA+CGG | + | chr8_4:26582190-26582209 | Msa1321200:intron | 40.0% |
| AGTGAAAAACCTGCAATGCA+TGG | - | chr8_4:26582279-26582298 | None:intergenic | 40.0% | |
| !! | TTTGTAGTTGGTGTTGTGCA+CGG | + | chr8_4:26582531-26582550 | Msa1321200:intron | 40.0% |
| CAATGCCACAAGGTCATTAT+GGG | + | chr8_4:26582945-26582964 | Msa1321200:CDS | 40.0% | |
| AATGCCACAAGGTCATTATG+GGG | + | chr8_4:26582946-26582965 | Msa1321200:CDS | 40.0% | |
| GGCATGAATCAAATGCATTC+AGG | + | chr8_4:26582968-26582987 | Msa1321200:CDS | 40.0% | |
| GGTTTCCCAAACAATATGCA+AGG | + | chr8_4:26583025-26583044 | Msa1321200:CDS | 40.0% | |
| GGATTATACCCTTGCATCAT+GGG | - | chr8_4:26583112-26583131 | None:intergenic | 40.0% | |
| AGGATTATACCCTTGCATCA+TGG | - | chr8_4:26583113-26583132 | None:intergenic | 40.0% | |
| GATGTAGACATGGGAAAAGT+TGG | - | chr8_4:26583318-26583337 | None:intergenic | 40.0% | |
| ACCAGTTTCAGCGATTCTAT+AGG | - | chr8_4:26583601-26583620 | None:intergenic | 40.0% | |
| GTCTTCAAGCTCCAAAGAAT+AGG | + | chr8_4:26583628-26583647 | Msa1321200:intron | 40.0% | |
| GTTGTCTCATGGTTTAGTGA+TGG | - | chr8_4:26583918-26583937 | None:intergenic | 40.0% | |
| CTGCACAAAAAGTTGTCTCA+TGG | - | chr8_4:26583929-26583948 | None:intergenic | 40.0% | |
| GGTACAAGATAGGACTATAC+TGG | - | chr8_4:26584021-26584040 | None:intergenic | 40.0% | |
| GATTCGCAAACAGTAAGTAC+TGG | - | chr8_4:26584042-26584061 | None:intergenic | 40.0% | |
| ATGGAACCTCTTATAGGCAA+GGG | - | chr8_4:26584469-26584488 | None:intergenic | 40.0% | |
| TATGGAACCTCTTATAGGCA+AGG | - | chr8_4:26584470-26584489 | None:intergenic | 40.0% | |
| CCTTGAGACCCATCAAAAGA+AGG | - | chr8_4:26580947-26580966 | None:intergenic | 45.0% | |
| !! | CCTTCTTTTGATGGGTCTCA+AGG | + | chr8_4:26580944-26580963 | Msa1321200:CDS | 45.0% |
| AGCACCTATTGAACCAGGAT+GGG | - | chr8_4:26580984-26581003 | None:intergenic | 45.0% | |
| TGGTTGGGGTTAAGAAGAGA+GGG | - | chr8_4:26581031-26581050 | None:intergenic | 45.0% | |
| TTGGTTGGGGTTAAGAAGAG+AGG | - | chr8_4:26581032-26581051 | None:intergenic | 45.0% | |
| ! | GGAATGGTTGTTGTTGGTTG+GGG | - | chr8_4:26581045-26581064 | None:intergenic | 45.0% |
| TGCTGTGGATTCTGTTGGAA+TGG | - | chr8_4:26581061-26581080 | None:intergenic | 45.0% | |
| GAATCTGCTGTGGATTCTGT+TGG | - | chr8_4:26581066-26581085 | None:intergenic | 45.0% | |
| TGATGTTGTGGAATCTGCTG+TGG | - | chr8_4:26581076-26581095 | None:intergenic | 45.0% | |
| TGTAGCTGTTGCTGATGTTG+TGG | - | chr8_4:26581088-26581107 | None:intergenic | 45.0% | |
| ! | TGTGGCATATTTGGAGGCAT+AGG | - | chr8_4:26581130-26581149 | None:intergenic | 45.0% |
| !! | TGGGAAGAGTGTTGTATCTG+TGG | - | chr8_4:26581148-26581167 | None:intergenic | 45.0% |
| ACACTCTTCCCATTCCTCTA+TGG | + | chr8_4:26581156-26581175 | Msa1321200:CDS | 45.0% | |
| TGGCATTCCATGTGGCATTT+GGG | - | chr8_4:26581212-26581231 | None:intergenic | 45.0% | |
| AAAGATCCTGGCATTCCATG+TGG | - | chr8_4:26581220-26581239 | None:intergenic | 45.0% | |
| ATTGGATGAGATGTAGGCAC+TGG | - | chr8_4:26581244-26581263 | None:intergenic | 45.0% | |
| TCTCATCCAATGCCAATTCC+AGG | + | chr8_4:26581253-26581272 | Msa1321200:CDS | 45.0% | |
| ATAGGTCCTGGAATTGGCAT+TGG | - | chr8_4:26581262-26581281 | None:intergenic | 45.0% | |
| AATGCCAATTCCAGGACCTA+TGG | + | chr8_4:26581261-26581280 | Msa1321200:CDS | 45.0% | |
| CATACCATAGGTCCTGGAAT+TGG | - | chr8_4:26581268-26581287 | None:intergenic | 45.0% | |
| TGAACACATACCATAGGTCC+TGG | - | chr8_4:26581274-26581293 | None:intergenic | 45.0% | |
| !!! | GGTCTAGATGATGGGTGTTT+TGG | + | chr8_4:26581406-26581425 | Msa1321200:intron | 45.0% |
| TTTAACAGTGGCCAACCACA+TGG | - | chr8_4:26581529-26581548 | None:intergenic | 45.0% | |
| ATGCATCTGCTCAATGTGCA+AGG | - | chr8_4:26581694-26581713 | None:intergenic | 45.0% | |
| AGTTAAACTGCCACAGCAAG+AGG | - | chr8_4:26582165-26582184 | None:intergenic | 45.0% | |
| ! | TAATGACCTTGTGGCATTGG+AGG | - | chr8_4:26582944-26582963 | None:intergenic | 45.0% |
| CCATAATGACCTTGTGGCAT+TGG | - | chr8_4:26582947-26582966 | None:intergenic | 45.0% | |
| CCAATGCCACAAGGTCATTA+TGG | + | chr8_4:26582944-26582963 | Msa1321200:CDS | 45.0% | |
| ATGCCACAAGGTCATTATGG+GGG | + | chr8_4:26582947-26582966 | Msa1321200:CDS | 45.0% | |
| TCAGGATCCTTGTCTACAAG+TGG | + | chr8_4:26582986-26583005 | Msa1321200:CDS | 45.0% | |
| TTGTTTGGGAAACCTCCCAT+GGG | - | chr8_4:26583019-26583038 | None:intergenic | 45.0% | |
| ATTGTTTGGGAAACCTCCCA+TGG | - | chr8_4:26583020-26583039 | None:intergenic | 45.0% | |
| GTGGCCCTTGCATATTGTTT+GGG | - | chr8_4:26583033-26583052 | None:intergenic | 45.0% | |
| ! | CTGTTAAATGGAGCACCTTG+AGG | - | chr8_4:26583070-26583089 | None:intergenic | 45.0% |
| GCTCCATTTAACAGACCACA+AGG | + | chr8_4:26583076-26583095 | Msa1321200:CDS | 45.0% | |
| CCACCTTGTGGTCTGTTAAA+TGG | - | chr8_4:26583082-26583101 | None:intergenic | 45.0% | |
| CCATTTAACAGACCACAAGG+TGG | + | chr8_4:26583079-26583098 | Msa1321200:CDS | 45.0% | |
| GACAAATGCCCATGATGCAA+GGG | + | chr8_4:26583101-26583120 | Msa1321200:CDS | 45.0% | |
| ! | GCAAGGGTATAATCCTTACC+AGG | + | chr8_4:26583117-26583136 | Msa1321200:CDS | 45.0% |
| AAGTGGAAATAGGAAGGGAG+CGG | - | chr8_4:26583340-26583359 | None:intergenic | 45.0% | |
| ! | CACAGCTGAGAAAAGGGTAT+AGG | + | chr8_4:26583392-26583411 | Msa1321200:intron | 45.0% |
| GCCTATAGAATCGCTGAAAC+TGG | + | chr8_4:26583597-26583616 | Msa1321200:intron | 45.0% | |
| GGACTATACTGGAGAGAAAG+AGG | - | chr8_4:26584010-26584029 | None:intergenic | 45.0% | |
| TGCAGTCTGGAAATCAACCT+GGG | + | chr8_4:26584261-26584280 | Msa1321200:intron | 45.0% | |
| !!! | ATTTTTAATATTTATTAACA+TGG | + | chr8_4:26581310-26581329 | Msa1321200:intron | 5.0% |
| !!! | TTTTTATTTTTTAAAATTAG+AGG | - | chr8_4:26582127-26582146 | None:intergenic | 5.0% |
| CATTACGAGTCATCAGCCCA+GGG | - | chr8_4:26580880-26580899 | None:intergenic | 50.0% | |
| TCATTACGAGTCATCAGCCC+AGG | - | chr8_4:26580881-26580900 | None:intergenic | 50.0% | |
| TGGGCTGATGACTCGTAATG+AGG | + | chr8_4:26580880-26580899 | Msa1321200:exon | 50.0% | |
| GGGCTGATGACTCGTAATGA+GGG | + | chr8_4:26580881-26580900 | Msa1321200:exon | 50.0% | |
| !! | CGTAATGAGGGTACCATTCC+AGG | + | chr8_4:26580893-26580912 | Msa1321200:CDS | 50.0% |
| TGCAACTCCAACACCTGGAA+TGG | - | chr8_4:26580909-26580928 | None:intergenic | 50.0% | |
| GCACCTATTGAACCAGGATG+GGG | - | chr8_4:26580983-26581002 | None:intergenic | 50.0% | |
| GAGCACCTATTGAACCAGGA+TGG | - | chr8_4:26580985-26581004 | None:intergenic | 50.0% | |
| GGGTTAAGAAGAGAGGGATG+TGG | - | chr8_4:26581025-26581044 | None:intergenic | 50.0% | |
| GTGAGGGACCATAGAGGAAT+GGG | - | chr8_4:26581167-26581186 | None:intergenic | 50.0% | |
| ! | ATGTTGGTGAGGGACCATAG+AGG | - | chr8_4:26581173-26581192 | None:intergenic | 50.0% |
| ATTCCATGTGGCATTTGGGG+GGG | - | chr8_4:26581208-26581227 | None:intergenic | 50.0% | |
| CATTCCATGTGGCATTTGGG+GGG | - | chr8_4:26581209-26581228 | None:intergenic | 50.0% | |
| GCATTCCATGTGGCATTTGG+GGG | - | chr8_4:26581210-26581229 | None:intergenic | 50.0% | |
| GGCATTCCATGTGGCATTTG+GGG | - | chr8_4:26581211-26581230 | None:intergenic | 50.0% | |
| CTGGCATTCCATGTGGCATT+TGG | - | chr8_4:26581213-26581232 | None:intergenic | 50.0% | |
| CAAATGCCACATGGAATGCC+AGG | + | chr8_4:26581211-26581230 | Msa1321200:CDS | 50.0% | |
| !! | GTAGGCACTGGTAAAGATCC+TGG | - | chr8_4:26581232-26581251 | None:intergenic | 50.0% |
| TGACATGTGTCGCCAGTGTT+GGG | - | chr8_4:26582431-26582450 | None:intergenic | 50.0% | |
| TTGACATGTGTCGCCAGTGT+TGG | - | chr8_4:26582432-26582451 | None:intergenic | 50.0% | |
| ACTGGCGACACATGTCAACA+GGG | + | chr8_4:26582434-26582453 | Msa1321200:intron | 50.0% | |
| TTGACATGTGTCGCGGTGTT+GGG | - | chr8_4:26582776-26582795 | None:intergenic | 50.0% | |
| ATTGACATGTGTCGCGGTGT+TGG | - | chr8_4:26582777-26582796 | None:intergenic | 50.0% | |
| ACACCGCGACACATGTCAAT+AGG | + | chr8_4:26582777-26582796 | Msa1321200:intron | 50.0% | |
| CACCGCGACACATGTCAATA+GGG | + | chr8_4:26582778-26582797 | Msa1321200:intron | 50.0% | |
| CTCCCTATTGACATGTGTCG+CGG | - | chr8_4:26582783-26582802 | None:intergenic | 50.0% | |
| TTTGTCCTTCAGGGGATGCA+AGG | + | chr8_4:26582911-26582930 | Msa1321200:intron | 50.0% | |
| CTTCAGGGGATGCAAGGTAT+GGG | + | chr8_4:26582917-26582936 | Msa1321200:intron | 50.0% | |
| ATGCCCCCATAATGACCTTG+TGG | - | chr8_4:26582953-26582972 | None:intergenic | 50.0% | |
| GGATCCTTGTCTACAAGTGG+AGG | + | chr8_4:26582989-26583008 | Msa1321200:CDS | 50.0% | |
| TGGTCCTCCACTTGTAGACA+AGG | - | chr8_4:26582996-26583015 | None:intergenic | 50.0% | |
| GGTGGCCCTTGCATATTGTT+TGG | - | chr8_4:26583034-26583053 | None:intergenic | 50.0% | |
| ATGGGCATTTGTCCACCTTG+TGG | - | chr8_4:26583094-26583113 | None:intergenic | 50.0% | |
| GGACAAATGCCCATGATGCA+AGG | + | chr8_4:26583100-26583119 | Msa1321200:CDS | 50.0% | |
| AAGGGAGCGGATGTAGACAT+GGG | - | chr8_4:26583327-26583346 | None:intergenic | 50.0% | |
| AGCTTGGCACAGCTGAGAAA+AGG | + | chr8_4:26583385-26583404 | Msa1321200:intron | 50.0% | |
| GCTTGGCACAGCTGAGAAAA+GGG | + | chr8_4:26583386-26583405 | Msa1321200:intron | 50.0% | |
| ATCGCTGAAACTGGTGCTCA+AGG | + | chr8_4:26583606-26583625 | Msa1321200:intron | 50.0% | |
| ! | CTTACTGTCGACTGATTGCG+AGG | + | chr8_4:26583735-26583754 | Msa1321200:intron | 50.0% |
| AGCAACTCAAACGCACGCTT+AGG | - | chr8_4:26583784-26583803 | None:intergenic | 50.0% | |
| CTGCAGTCTGGAAATCAACC+TGG | + | chr8_4:26584260-26584279 | Msa1321200:intron | 50.0% | |
| ATGCCTCCAAACTCGCAACA+AGG | + | chr8_4:26584284-26584303 | Msa1321200:CDS | 50.0% | |
| ! | CACTGAGGCATTTGAGAGTG+TGG | - | chr8_4:26584314-26584333 | None:intergenic | 50.0% |
| !! | GAGGGTACCATTCCAGGTGT+TGG | + | chr8_4:26580899-26580918 | Msa1321200:CDS | 55.0% |
| GGCATTGCAACTCCAACACC+TGG | - | chr8_4:26580914-26580933 | None:intergenic | 55.0% | |
| CAGCCCCATCCTGGTTCAAT+AGG | + | chr8_4:26580977-26580996 | Msa1321200:CDS | 55.0% | |
| !! | GGAGGAGCACCTATTGAACC+AGG | - | chr8_4:26580989-26581008 | None:intergenic | 55.0% |
| AGAAGAGAGGGATGTGGACC+CGG | - | chr8_4:26581019-26581038 | None:intergenic | 55.0% | |
| GGTGAGGGACCATAGAGGAA+TGG | - | chr8_4:26581168-26581187 | None:intergenic | 55.0% | |
| TGTATATGTGGGGGGCTGCT+GGG | + | chr8_4:26581384-26581403 | Msa1321200:intron | 55.0% | |
| GCTGCTGGGGTCTAGATGAT+GGG | + | chr8_4:26581398-26581417 | Msa1321200:intron | 55.0% | |
| GCTGGCTAAGAGCCTAAGAG+AGG | - | chr8_4:26581609-26581628 | None:intergenic | 55.0% | |
| GAGAGTAGGCCATGCATTGC+AGG | + | chr8_4:26582267-26582286 | Msa1321200:intron | 55.0% | |
| CACTGGCGACACATGTCAAC+AGG | + | chr8_4:26582433-26582452 | Msa1321200:intron | 55.0% | |
| GAGAGTTGGCCATGCATTGC+AGG | + | chr8_4:26582607-26582626 | Msa1321200:intron | 55.0% | |
| CCATACCTTGCATCCCCTGA+AGG | - | chr8_4:26582919-26582938 | None:intergenic | 55.0% | |
| CCTTCAGGGGATGCAAGGTA+TGG | + | chr8_4:26582916-26582935 | Msa1321200:intron | 55.0% | |
| ATGGGTCCTCCAATGCCACA+AGG | + | chr8_4:26582935-26582954 | Msa1321200:CDS | 55.0% | |
| TACAAGTGGAGGACCACCCA+TGG | + | chr8_4:26583000-26583019 | Msa1321200:CDS | 55.0% | |
| ACAAGTGGAGGACCACCCAT+GGG | + | chr8_4:26583001-26583020 | Msa1321200:CDS | 55.0% | |
| TTTGGGAAACCTCCCATGGG+TGG | - | chr8_4:26583016-26583035 | None:intergenic | 55.0% | |
| GAAGGGAGCGGATGTAGACA+TGG | - | chr8_4:26583328-26583347 | None:intergenic | 55.0% | |
| CCACCTTGTTGCGAGTTTGG+AGG | - | chr8_4:26584290-26584309 | None:intergenic | 55.0% | |
| CCTCCAAACTCGCAACAAGG+TGG | + | chr8_4:26584287-26584306 | Msa1321200:CDS | 55.0% | |
| GGTCCACCTTGTTGCGAGTT+TGG | - | chr8_4:26584293-26584312 | None:intergenic | 55.0% | |
| AAGAGAGGGATGTGGACCCG+GGG | - | chr8_4:26581017-26581036 | None:intergenic | 60.0% | |
| GAAGAGAGGGATGTGGACCC+GGG | - | chr8_4:26581018-26581037 | None:intergenic | 60.0% | |
| ! | GGCGGGGCAAATGTTGGTGA+GGG | - | chr8_4:26581183-26581202 | None:intergenic | 60.0% |
| CATGTGGCATTTGGGGGGGT+GGG | - | chr8_4:26581204-26581223 | None:intergenic | 60.0% | |
| GTGTATATGTGGGGGGCTGC+TGG | + | chr8_4:26581383-26581402 | Msa1321200:intron | 60.0% | |
| GTATATGTGGGGGGCTGCTG+GGG | + | chr8_4:26581385-26581404 | Msa1321200:intron | 60.0% | |
| GGCTGCTGGGGTCTAGATGA+TGG | + | chr8_4:26581397-26581416 | Msa1321200:intron | 60.0% | |
| !! | TGCGAGTTTGGAGGCATCCC+AGG | - | chr8_4:26584281-26584300 | None:intergenic | 60.0% |
| GAGCAGAAGCAGCCCCATCC+TGG | + | chr8_4:26580968-26580987 | Msa1321200:CDS | 65.0% | |
| AGGTGCTCCTCCTCTTCCCC+CGG | + | chr8_4:26580997-26581016 | Msa1321200:CDS | 65.0% | |
| AGAGAGGGATGTGGACCCGG+GGG | - | chr8_4:26581016-26581035 | None:intergenic | 65.0% | |
| GGGCGGGGCAAATGTTGGTG+AGG | - | chr8_4:26581184-26581203 | None:intergenic | 65.0% | |
| CCATGTGGCATTTGGGGGGG+TGG | - | chr8_4:26581205-26581224 | None:intergenic | 65.0% | |
| CCACCCCCCCAAATGCCACA+TGG | + | chr8_4:26581202-26581221 | Msa1321200:CDS | 65.0% | |
| AGTGGAGGACCACCCATGGG+AGG | + | chr8_4:26583004-26583023 | Msa1321200:CDS | 65.0% | |
| GGTGCTCCTCCTCTTCCCCC+GGG | + | chr8_4:26580998-26581017 | Msa1321200:CDS | 70.0% | |
| TGTGGACCCGGGGGAAGAGG+AGG | - | chr8_4:26581007-26581026 | None:intergenic | 70.0% | |
| GGATGTGGACCCGGGGGAAG+AGG | - | chr8_4:26581010-26581029 | None:intergenic | 70.0% | |
| GGGGTGGGCGGGGCAAATGT+TGG | - | chr8_4:26581189-26581208 | None:intergenic | 70.0% | |
| TGGCATTTGGGGGGGTGGGC+GGG | - | chr8_4:26581200-26581219 | None:intergenic | 70.0% | |
| GTGGCATTTGGGGGGGTGGG+CGG | - | chr8_4:26581201-26581220 | None:intergenic | 70.0% | |
| GGCATTTGGGGGGGTGGGCG+GGG | - | chr8_4:26581199-26581218 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 26580877 | 26584643 | 26580877 | ID=Msa1321200;Name=Msa1321200 |
| chr8_4 | mRNA | 26580877 | 26584643 | 26580877 | ID=Msa1321200-mRNA-1;Parent=Msa1321200;Name=Msa1321200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=10|1|1|1|1|1|3|309|226 |
| chr8_4 | exon | 26580877 | 26581282 | 26580877 | ID=Msa1321200-mRNA-1:exon:9047;Parent=Msa1321200-mRNA-1 |
| chr8_4 | exon | 26582923 | 26583138 | 26582923 | ID=Msa1321200-mRNA-1:exon:9048;Parent=Msa1321200-mRNA-1 |
| chr8_4 | exon | 26584266 | 26584643 | 26584266 | ID=Msa1321200-mRNA-1:exon:9049;Parent=Msa1321200-mRNA-1 |
| chr8_4 | five_prime_UTR | 26580877 | 26580886 | 26580877 | ID=Msa1321200-mRNA-1:five_prime_utr;Parent=Msa1321200-mRNA-1 |
| chr8_4 | CDS | 26580887 | 26581282 | 26580887 | ID=Msa1321200-mRNA-1:cds;Parent=Msa1321200-mRNA-1 |
| chr8_4 | CDS | 26582923 | 26583138 | 26582923 | ID=Msa1321200-mRNA-1:cds;Parent=Msa1321200-mRNA-1 |
| chr8_4 | CDS | 26584266 | 26584334 | 26584266 | ID=Msa1321200-mRNA-1:cds;Parent=Msa1321200-mRNA-1 |
| chr8_4 | three_prime_UTR | 26584335 | 26584643 | 26584335 | ID=Msa1321200-mRNA-1:three_prime_utr;Parent=Msa1321200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
