Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603110 | XP_003606657.1 | 88.358 | 335 | 6 | 1 | 1 | 335 | 1 | 302 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603110 | G7JUS4 | 88.358 | 335 | 6 | 1 | 1 | 335 | 1 | 302 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603110 | Msa0644130 | 0.895207 | 1.193351e-75 | -8.615850e-47 |
| Msa0603110 | Msa0683950 | 0.964059 | 7.488581e-123 | -8.615850e-47 |
| Msa0603110 | Msa1018990 | 0.825815 | 3.816532e-54 | -8.615850e-47 |
| Msa0603110 | Msa1041730 | -0.804627 | 1.972985e-49 | -8.615850e-47 |
| Msa0603110 | Msa1244720 | 0.813165 | 2.939094e-51 | -8.615850e-47 |
| Msa0548090 | Msa0603110 | 0.961770 | 4.335684e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603110 | MtrunA17_Chr4g0031101 | 88.358 | 335 | 6 | 1 | 1 | 335 | 1 | 302 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603110 | AT5G59960.2 | 68.827 | 324 | 68 | 1 | 12 | 335 | 16 | 306 | 8.19e-161 | 454 |
| Msa0603110 | AT5G59960.1 | 68.827 | 324 | 68 | 1 | 12 | 335 | 16 | 306 | 7.85e-159 | 451 |
| Msa0603110 | AT5G59960.3 | 70.213 | 235 | 37 | 1 | 101 | 335 | 1 | 202 | 2.62e-113 | 332 |
Find 107 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTAAATATTGATATT+TGG | 0.200322 | 4_2:-47242260 | Msa0603110:five_prime_UTR |
| GAAAATGATAAAGGTGTTTC+TGG | 0.205030 | 4_2:-47242228 | Msa0603110:five_prime_UTR |
| CTTTAAGAAATGAGTTAAAA+AGG | 0.213611 | 4_2:+47238297 | None:intergenic |
| TGATAATGTGTTGTTTAAAA+TGG | 0.218863 | 4_2:+47242569 | None:intergenic |
| GCATTATCTTTCAGAAATTA+AGG | 0.220788 | 4_2:-47238826 | Msa0603110:CDS |
| TTCAGAAATTAAGGTCCTTC+AGG | 0.292111 | 4_2:-47238817 | Msa0603110:CDS |
| GAATACCGAAGGAGCACTTC+TGG | 0.300314 | 4_2:+47240067 | None:intergenic |
| GGATCGGGATTAGAATTTCT+AGG | 0.322758 | 4_2:-47242207 | Msa0603110:five_prime_UTR |
| GGTATTGGCCATCCTCTTGC+TGG | 0.327491 | 4_2:-47238060 | Msa0603110:CDS |
| CCATCCATGGCGTAAATTAC+AGG | 0.342020 | 4_2:+47241018 | None:intergenic |
| TTCCAAACTGCTTTCTTAGT+TGG | 0.343184 | 4_2:-47239025 | Msa0603110:CDS |
| AAGAAAGCAGTTTGGAAAAC+AGG | 0.345106 | 4_2:+47239031 | None:intergenic |
| ATCTCATTAGTTTGTTCTTC+AGG | 0.350126 | 4_2:-47238096 | Msa0603110:CDS |
| TACATACCCATTTGTGAAAC+AGG | 0.360149 | 4_2:+47240872 | None:intergenic |
| AATTCGCCGCCGAGAAATTC+CGG | 0.371340 | 4_2:-47242143 | Msa0603110:CDS |
| TTTCCTCACATTATATTACT+TGG | 0.371935 | 4_2:+47237751 | None:intergenic |
| GGTTGCTTTATCCATGGTAT+TGG | 0.378782 | 4_2:-47238075 | Msa0603110:CDS |
| CATTTGTGGCACCTTGAACT+AGG | 0.386213 | 4_2:+47240038 | None:intergenic |
| CCCTCAAATTCAGTACCTCT+TGG | 0.387643 | 4_2:-47239397 | Msa0603110:intron |
| GCAGAGGCGTAATTTGTTGC+AGG | 0.395535 | 4_2:-47241958 | Msa0603110:CDS |
| TTAGCCTCCTGTTTCACAAA+TGG | 0.406813 | 4_2:-47240879 | Msa0603110:CDS |
| GAGCTGTTCGTCATGCTGCC+TGG | 0.412460 | 4_2:-47238613 | Msa0603110:CDS |
| TTCACTGTATGGCTTAGAAT+AGG | 0.416346 | 4_2:-47237783 | Msa0603110:three_prime_UTR |
| TAGCCTCCTGTTTCACAAAT+GGG | 0.426157 | 4_2:-47240878 | Msa0603110:intron |
| AGAGAGAGCATCGAGATAAC+CGG | 0.433517 | 4_2:+47242124 | None:intergenic |
| GATAAAGGTGTTTCTGGATC+GGG | 0.436527 | 4_2:-47242222 | Msa0603110:five_prime_UTR |
| ATTTGTGGCACCTTGAACTA+GGG | 0.437158 | 4_2:+47240039 | None:intergenic |
| AAGAAAATCCAGTGCTTCCC+AGG | 0.438344 | 4_2:+47238595 | None:intergenic |
| TCAGAAATTAAGGTCCTTCA+GGG | 0.439567 | 4_2:-47238816 | Msa0603110:intron |
| TATTCATCTGCCCTAGTTCA+AGG | 0.439663 | 4_2:-47240049 | Msa0603110:CDS |
| ACTTTGTGATTTCCTGCATT+CGG | 0.440801 | 4_2:-47238036 | Msa0603110:exon |
| TCGAGATAACCGGAATTTCT+CGG | 0.441952 | 4_2:+47242134 | None:intergenic |
| AAGATTCTAGAAAATGATAA+AGG | 0.447440 | 4_2:-47242237 | Msa0603110:five_prime_UTR |
| AATGATTGAATTGATGATGT+TGG | 0.448393 | 4_2:+47242527 | None:intergenic |
| TTACCAGCTTCAAAAGCTAA+AGG | 0.450026 | 4_2:-47238865 | Msa0603110:intron |
| TGTGAATGAACTTACTGATC+AGG | 0.450938 | 4_2:-47238984 | Msa0603110:intron |
| CATAATACCCTCGAGACATA+TGG | 0.450973 | 4_2:+47237937 | None:intergenic |
| AGCTGTTCGTCATGCTGCCT+GGG | 0.455494 | 4_2:-47238612 | Msa0603110:CDS |
| AGAAAATATCAACCCGAGTA+AGG | 0.461893 | 4_2:+47238000 | None:intergenic |
| CAAACTGCTTTCTTAGTTGG+CGG | 0.463190 | 4_2:-47239022 | Msa0603110:CDS |
| TCATGCTGCCTGGGAAGCAC+TGG | 0.468375 | 4_2:-47238603 | Msa0603110:CDS |
| CGCCAACTAAGAAAGCAGTT+TGG | 0.468480 | 4_2:+47239023 | None:intergenic |
| ATAATCCAGAAGTGCTCCTT+CGG | 0.475177 | 4_2:-47240072 | Msa0603110:CDS |
| TTCTCCTGTAATTTACGCCA+TGG | 0.476208 | 4_2:-47241022 | Msa0603110:CDS |
| ATGATTGAATTGATGATGTT+GGG | 0.478657 | 4_2:+47242528 | None:intergenic |
| TACAGAGTACTGGTTTGAGA+TGG | 0.480144 | 4_2:-47240315 | Msa0603110:intron |
| ATTGAATAAGATTCCTCTCC+AGG | 0.480234 | 4_2:-47239349 | Msa0603110:intron |
| TCTTCAGGTTGCTTTATCCA+TGG | 0.482081 | 4_2:-47238081 | Msa0603110:CDS |
| CTGGTTGGCAAGAGATGACT+CGG | 0.490132 | 4_2:+47237900 | None:intergenic |
| GATCGGGATTAGAATTTCTA+GGG | 0.497344 | 4_2:-47242206 | Msa0603110:five_prime_UTR |
| TTTGTACAAGTGCCTGAAAG+TGG | 0.498510 | 4_2:-47240961 | Msa0603110:CDS |
| GAAAGATAATGCAGCAGCAC+AGG | 0.500851 | 4_2:+47238837 | None:intergenic |
| GCAAACTAATATGAACTTTG+TGG | 0.506529 | 4_2:+47238256 | None:intergenic |
| TGATAAAGGTGTTTCTGGAT+CGG | 0.506894 | 4_2:-47242223 | Msa0603110:five_prime_UTR |
| TTGACATGATTGTCCAACTC+TGG | 0.511635 | 4_2:-47240927 | Msa0603110:CDS |
| TACAGGTTGGGCAGTACCCT+CGG | 0.514602 | 4_2:-47238120 | Msa0603110:intron |
| TTCATACCAGAAAACATTTG+TGG | 0.519635 | 4_2:+47240024 | None:intergenic |
| CCTGTAATTTACGCCATGGA+TGG | 0.522859 | 4_2:-47241018 | Msa0603110:CDS |
| ACAGAGTACTGGTTTGAGAT+GGG | 0.523005 | 4_2:-47240314 | Msa0603110:intron |
| CATGACGAACAGCTCTAGTC+GGG | 0.524027 | 4_2:+47238621 | None:intergenic |
| TTGGACAATCATGTCAAGGA+TGG | 0.533101 | 4_2:+47240933 | None:intergenic |
| AAAACAACAAAGGTAGAAGA+AGG | 0.536456 | 4_2:-47242365 | Msa0603110:five_prime_UTR |
| GATTCATAAGAAGCTTCAAC+GGG | 0.542429 | 4_2:-47242096 | Msa0603110:intron |
| GTAAAAGATTGTCCGAATGC+AGG | 0.543724 | 4_2:+47238024 | None:intergenic |
| TCATTCACAAATATATCTGC+AGG | 0.545748 | 4_2:+47238998 | None:intergenic |
| CAAATGACTGACTCCAGAGT+TGG | 0.548174 | 4_2:+47240914 | None:intergenic |
| GAAACACAACGGACCATCCA+TGG | 0.553280 | 4_2:+47241005 | None:intergenic |
| TTCTTACACGAAATATAGAC+TGG | 0.556069 | 4_2:+47239521 | None:intergenic |
| ACAGCTCTAGTCGGGTACAT+TGG | 0.557826 | 4_2:+47238629 | None:intergenic |
| AGTACTGGTTTGAGATGGGA+TGG | 0.560930 | 4_2:-47240310 | Msa0603110:CDS |
| AACAAACTAATGAGATGCCG+AGG | 0.563733 | 4_2:+47238103 | None:intergenic |
| AAGAAGCAAGGCATTCGAGC+TGG | 0.571008 | 4_2:+47237881 | None:intergenic |
| TGGACAATCATGTCAAGGAT+GGG | 0.572002 | 4_2:+47240934 | None:intergenic |
| GTCGGGTACATTGGACCACC+AGG | 0.572378 | 4_2:+47238638 | None:intergenic |
| GCATGACGAACAGCTCTAGT+CGG | 0.576852 | 4_2:+47238620 | None:intergenic |
| ACAAAGTTCCAGCAAGAGGA+TGG | 0.582995 | 4_2:+47238052 | None:intergenic |
| AGCAAGGCATTCGAGCTGGT+TGG | 0.584713 | 4_2:+47237885 | None:intergenic |
| CGATTCATAAGAAGCTTCAA+CGG | 0.588835 | 4_2:-47242097 | Msa0603110:CDS |
| GAGGTTGATGATCGAGCCAA+AGG | 0.590258 | 4_2:-47241912 | Msa0603110:intron |
| CTGATAGGGTATACCTGGAG+AGG | 0.599368 | 4_2:+47239336 | None:intergenic |
| CCAGCTTCAAAAGCTAAAGG+TGG | 0.599881 | 4_2:-47238862 | Msa0603110:intron |
| CAAGAGGATGGCCAATACCA+TGG | 0.605415 | 4_2:+47238064 | None:intergenic |
| TATCAGAGGGTCAAGAAGCA+AGG | 0.608181 | 4_2:+47237869 | None:intergenic |
| AGTTTGCAACATAGCACTAG+TGG | 0.611149 | 4_2:-47238240 | Msa0603110:CDS |
| AATCACAAAGTTCCAGCAAG+AGG | 0.620726 | 4_2:+47238048 | None:intergenic |
| AGTCCAAGTAATATAATGTG+AGG | 0.622601 | 4_2:-47237754 | Msa0603110:three_prime_UTR |
| TCTCGGCGGCGAATTAGCGT+CGG | 0.631890 | 4_2:+47242151 | None:intergenic |
| AGAGTTGGACAATCATGTCA+AGG | 0.632220 | 4_2:+47240929 | None:intergenic |
| TTGACATTCAAACAAATACA+AGG | 0.632833 | 4_2:-47239549 | Msa0603110:CDS |
| AGAAAGCAGTTTGGAAAACA+GGG | 0.635503 | 4_2:+47239032 | None:intergenic |
| CCTCTGCGACGAATTTGCCA+AGG | 0.637071 | 4_2:+47241974 | None:intergenic |
| TGAAATGAAATATACCCAAG+AGG | 0.650360 | 4_2:+47240281 | None:intergenic |
| TAGCGTCGGACATTTCTGAT+CGG | 0.659020 | 4_2:+47242165 | None:intergenic |
| TAGACGTCCATATGTCTCGA+GGG | 0.659102 | 4_2:-47237944 | Msa0603110:three_prime_UTR |
| CCTTGGCAAATTCGTCGCAG+AGG | 0.660365 | 4_2:-47241974 | Msa0603110:CDS |
| TGAAGAATAGCGTAGAAACG+TGG | 0.660999 | 4_2:+47242484 | None:intergenic |
| ATAGACGTCCATATGTCTCG+AGG | 0.664889 | 4_2:-47237945 | Msa0603110:three_prime_UTR |
| ACAAAGGTAGAAGAAGGTAG+CGG | 0.670271 | 4_2:-47242359 | Msa0603110:five_prime_UTR |
| GAATCTTATTCAATCGAGTG+TGG | 0.672963 | 4_2:+47239358 | None:intergenic |
| ATACCCATTTGTGAAACAGG+AGG | 0.674414 | 4_2:+47240875 | None:intergenic |
| CTAGGGCAGATGAATACCGA+AGG | 0.681129 | 4_2:+47240056 | None:intergenic |
| ACAAACTAATGAGATGCCGA+GGG | 0.696864 | 4_2:+47238104 | None:intergenic |
| TGGTTGGCAAGAGATGACTC+GGG | 0.709458 | 4_2:+47237901 | None:intergenic |
| AGCACATCATAGAAACACAA+CGG | 0.709751 | 4_2:+47240994 | None:intergenic |
| TGGTTGATGTAGTACCCTGA+AGG | 0.723094 | 4_2:+47238802 | None:intergenic |
| GTAATGCAACATCATCCAAG+AGG | 0.729405 | 4_2:+47239382 | None:intergenic |
| AGATAACCGGAATTTCTCGG+CGG | 0.785455 | 4_2:+47242137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATATATTTTTTAATTT+TGG | - | chr4_2:47239749-47239768 | Msa0603110:intron | 0.0% |
| !!! | ATTATATATTTTTTAATTTT+GGG | - | chr4_2:47239750-47239769 | Msa0603110:intron | 0.0% |
| !! | TTAAAAAAAAAAAACAACAA+AGG | - | chr4_2:47237722-47237741 | Msa0603110:three_prime_UTR | 10.0% |
| !!! | AAATTAAAATGTTACTTAAA+TGG | - | chr4_2:47240144-47240163 | Msa0603110:intron | 10.0% |
| !! | ACATAAGTTAAATTAAATAT+AGG | + | chr4_2:47240649-47240668 | None:intergenic | 10.0% |
| !!! | GAATGTTATTTTTTGTTTTA+TGG | + | chr4_2:47237691-47237710 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTAAATTACTAC+AGG | + | chr4_2:47238333-47238352 | None:intergenic | 15.0% |
| !! | TGTATATTTGAATCTAAATA+AGG | - | chr4_2:47238943-47238962 | Msa0603110:intron | 15.0% |
| !! | GTATATTTGAATCTAAATAA+GGG | - | chr4_2:47238944-47238963 | Msa0603110:intron | 15.0% |
| !! | TATATTTGAATCTAAATAAG+GGG | - | chr4_2:47238945-47238964 | Msa0603110:intron | 15.0% |
| !!! | ATAATCTTTATTTTCTTGAT+AGG | - | chr4_2:47238971-47238990 | Msa0603110:intron | 15.0% |
| !!! | TAATCTTTATTTTCTTGATA+GGG | - | chr4_2:47238972-47238991 | Msa0603110:intron | 15.0% |
| !! | TCACTCTATAAATAATTAAA+CGG | + | chr4_2:47239641-47239660 | None:intergenic | 15.0% |
| !! | TATATTATTATATCCCATTT+AGG | + | chr4_2:47240299-47240318 | None:intergenic | 15.0% |
| !! | TAAACAATAAAAATTCTAAC+CGG | + | chr4_2:47241566-47241585 | None:intergenic | 15.0% |
| !!! | TCTAGCAATTTATTTTAATT+TGG | + | chr4_2:47241605-47241624 | None:intergenic | 15.0% |
| !! | TTTAAGAAATGAGTTAAAAA+GGG | + | chr4_2:47241837-47241856 | None:intergenic | 15.0% |
| !!! | TTTTTAACTCATTTCTTAAA+GGG | - | chr4_2:47241837-47241856 | Msa0603110:intron | 15.0% |
| !!! | AAATATTGATGTTGTTTTTA+TGG | - | chr4_2:47241984-47242003 | Msa0603110:intron | 15.0% |
| !!! | TTTTTTGTTTTATGGTAACT+TGG | + | chr4_2:47237683-47237702 | None:intergenic | 20.0% |
| !!! | AAGATTCTAGAAAATGATAA+AGG | - | chr4_2:47237895-47237914 | Msa0603110:three_prime_UTR | 20.0% |
| !! | TAGAAATGTCATATTTGTAT+TGG | - | chr4_2:47238797-47238816 | Msa0603110:intron | 20.0% |
| !! | CTATTCAAGATTAGAAAAAT+AGG | - | chr4_2:47238849-47238868 | Msa0603110:CDS | 20.0% |
| !!! | AATCTTTATTTTCTTGATAG+GGG | - | chr4_2:47238973-47238992 | Msa0603110:intron | 20.0% |
| !!! | TTTTATTTAGTGTGATAGTA+TGG | - | chr4_2:47239325-47239344 | Msa0603110:intron | 20.0% |
| !! | ATATAATATGCATTAGTTCA+TGG | + | chr4_2:47239737-47239756 | None:intergenic | 20.0% |
| !!! | ATAGGAATTTGTATTTCTTT+TGG | + | chr4_2:47239947-47239966 | None:intergenic | 20.0% |
| !!! | ACATTTTAATTTATAACAGC+CGG | + | chr4_2:47240136-47240155 | None:intergenic | 20.0% |
| !!! | TATAATTTTGCAAAAAGACA+AGG | - | chr4_2:47240168-47240187 | Msa0603110:intron | 20.0% |
| !! | ATGGGATATAATAATATATG+TGG | - | chr4_2:47240301-47240320 | Msa0603110:CDS | 20.0% |
| !! | TGGGATATAATAATATATGT+GGG | - | chr4_2:47240302-47240321 | Msa0603110:CDS | 20.0% |
| !!! | ATATTGGATTGTTATTGAAA+CGG | + | chr4_2:47240399-47240418 | None:intergenic | 20.0% |
| !!! | TTCATTCTATTTTACAATTC+AGG | - | chr4_2:47240969-47240988 | Msa0603110:CDS | 20.0% |
| !! | ATTATGTTACCTTTAATCAT+TGG | - | chr4_2:47241229-47241248 | Msa0603110:intron | 20.0% |
| !!! | GATCAATTAAAAGATTTTTG+AGG | - | chr4_2:47241699-47241718 | Msa0603110:intron | 20.0% |
| !!! | ATTTTTGAGGTCTTTTTTAT+GGG | - | chr4_2:47241712-47241731 | Msa0603110:intron | 20.0% |
| !!! | CTTTAAGAAATGAGTTAAAA+AGG | + | chr4_2:47241838-47241857 | None:intergenic | 20.0% |
| !!! | CTTTTTAACTCATTTCTTAA+AGG | - | chr4_2:47241836-47241855 | Msa0603110:intron | 20.0% |
| !!! | ATGATTGAATTGATGATGTT+GGG | + | chr4_2:47237607-47237626 | None:intergenic | 25.0% |
| !!! | AATGATTGAATTGATGATGT+TGG | + | chr4_2:47237608-47237627 | None:intergenic | 25.0% |
| ! | ATGAAAAATGAAACACACAA+AGG | + | chr4_2:47237825-47237844 | None:intergenic | 25.0% |
| ! | TTATGCGGAGAAAAAAAAAA+TGG | - | chr4_2:47238068-47238087 | Msa0603110:CDS | 25.0% |
| !!! | AATTTTTGTTTTGATGCTAC+AGG | - | chr4_2:47238135-47238154 | Msa0603110:intron | 25.0% |
| ! | AAAAGAGTGAATGATTTGAA+TGG | - | chr4_2:47238531-47238550 | Msa0603110:intron | 25.0% |
| !!! | ATGGTTTTTAGTTCATTGTT+TGG | - | chr4_2:47238610-47238629 | Msa0603110:CDS | 25.0% |
| ! | TCTTTATGAAGAACATGTAT+TGG | - | chr4_2:47238685-47238704 | Msa0603110:CDS | 25.0% |
| ! | CATAGCAAAATTATAAGCTA+TGG | + | chr4_2:47238762-47238781 | None:intergenic | 25.0% |
| !!! | TATAATTTTGCTATGTCACT+TGG | - | chr4_2:47238767-47238786 | Msa0603110:intron | 25.0% |
| !! | ATTGATAACCATGTTAAATG+AGG | - | chr4_2:47238886-47238905 | Msa0603110:intron | 25.0% |
| !!! | ATCTTTATTTTCTTGATAGG+GGG | - | chr4_2:47238974-47238993 | Msa0603110:intron | 25.0% |
| ! | TCAGAAAGCAAAAAACAATA+CGG | + | chr4_2:47239298-47239317 | None:intergenic | 25.0% |
| !!! | TATTGTTTTTTGCTTTCTGA+AGG | - | chr4_2:47239298-47239317 | Msa0603110:intron | 25.0% |
| !!! | ATTGTTTTTTGCTTTCTGAA+GGG | - | chr4_2:47239299-47239318 | Msa0603110:intron | 25.0% |
| ! | AATTCAAAACCAGCAATTAA+TGG | + | chr4_2:47239351-47239370 | None:intergenic | 25.0% |
| ! | AATATCATACAGTCAAATTG+AGG | + | chr4_2:47239447-47239466 | None:intergenic | 25.0% |
| ! | AATTTGACTGTATGATATTC+TGG | - | chr4_2:47239448-47239467 | Msa0603110:intron | 25.0% |
| !! | CTAAGGATTAAATCTAAAAC+CGG | + | chr4_2:47239565-47239584 | None:intergenic | 25.0% |
| !!! | TAGAATTTGCTATGAGAATT+TGG | - | chr4_2:47239785-47239804 | Msa0603110:intron | 25.0% |
| !! | TTGTATTTCTTTTGGCAATA+TGG | + | chr4_2:47239939-47239958 | None:intergenic | 25.0% |
| ! | AAAGTCAATTAGAAACTGAT+AGG | + | chr4_2:47239965-47239984 | None:intergenic | 25.0% |
| !!! | AACTGTGTTTTTTAATGGAT+AGG | + | chr4_2:47240430-47240449 | None:intergenic | 25.0% |
| ! | ATCCATTAAAAAACACAGTT+TGG | - | chr4_2:47240430-47240449 | Msa0603110:intron | 25.0% |
| ! | AAGACAGTCTTAATAACATT+TGG | + | chr4_2:47240464-47240483 | None:intergenic | 25.0% |
| !! | GGAAATGCAATAATTGTTTT+TGG | - | chr4_2:47240546-47240565 | Msa0603110:intron | 25.0% |
| ! | TTGACATTCAAACAAATACA+AGG | - | chr4_2:47240583-47240602 | Msa0603110:intron | 25.0% |
| ! | TTATGTGTATCATCTGAATA+AGG | - | chr4_2:47240663-47240682 | Msa0603110:intron | 25.0% |
| ! | AAAGTCCTATAAACAATTGT+TGG | + | chr4_2:47240850-47240869 | None:intergenic | 25.0% |
| ! | AAATTGACACCAATGATTAA+AGG | + | chr4_2:47241241-47241260 | None:intergenic | 25.0% |
| ! | GCATTATCTTTCAGAAATTA+AGG | - | chr4_2:47241306-47241325 | Msa0603110:intron | 25.0% |
| ! | TGTTAGCATAAACAAAAGAA+TGG | + | chr4_2:47241411-47241430 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGTTTATGCTAAC+AGG | - | chr4_2:47241410-47241429 | Msa0603110:intron | 25.0% |
| !!! | CTGATAGGAAATGTTTTTTT+GGG | + | chr4_2:47241644-47241663 | None:intergenic | 25.0% |
| !!! | TCTGATAGGAAATGTTTTTT+TGG | + | chr4_2:47241645-47241664 | None:intergenic | 25.0% |
| ! | TGATCTCAATAATGAAAGAT+GGG | + | chr4_2:47241684-47241703 | None:intergenic | 25.0% |
| ! | TTGATCTCAATAATGAAAGA+TGG | + | chr4_2:47241685-47241704 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGGTCTTTTTTA+TGG | - | chr4_2:47241711-47241730 | Msa0603110:intron | 25.0% |
| ! | TTAAATTTCCAACTGATTAC+AGG | - | chr4_2:47241768-47241787 | Msa0603110:intron | 25.0% |
| !!! | GTTTTTTTAAAATGACCAGA+TGG | - | chr4_2:47241802-47241821 | Msa0603110:intron | 25.0% |
| !!! | TTGTTTTTATGGTATCATAC+AGG | - | chr4_2:47241995-47242014 | Msa0603110:intron | 25.0% |
| ! | GGAAAAAAAGAAATATCAGA+GGG | + | chr4_2:47242279-47242298 | None:intergenic | 25.0% |
| ! | TGGAAAAAAAGAAATATCAG+AGG | + | chr4_2:47242280-47242299 | None:intergenic | 25.0% |
| !! | TGTATATTTTGTTCACTGTA+TGG | - | chr4_2:47242338-47242357 | Msa0603110:five_prime_UTR | 25.0% |
| ! | TTTCCTCACATTATATTACT+TGG | + | chr4_2:47242384-47242403 | None:intergenic | 25.0% |
| CGTGGAAAACAAAAAAAAGA+TGG | + | chr4_2:47237633-47237652 | None:intergenic | 30.0% | |
| AAAACAACAAAGGTAGAAGA+AGG | - | chr4_2:47237767-47237786 | Msa0603110:three_prime_UTR | 30.0% | |
| !! | GAAAATGATAAAGGTGTTTC+TGG | - | chr4_2:47237904-47237923 | Msa0603110:three_prime_UTR | 30.0% |
| TCAAAAGCTACAATTACCTT+TGG | + | chr4_2:47238239-47238258 | None:intergenic | 30.0% | |
| TGTAATGTAATTGACTGACA+CGG | - | chr4_2:47238353-47238372 | Msa0603110:intron | 30.0% | |
| GTCTTGTATTGCTAAATGTA+AGG | - | chr4_2:47238715-47238734 | Msa0603110:intron | 30.0% | |
| TGTATTCTCCTCATTTAACA+TGG | + | chr4_2:47238897-47238916 | None:intergenic | 30.0% | |
| ATGAGGAGAATACATAACAA+TGG | - | chr4_2:47238903-47238922 | Msa0603110:intron | 30.0% | |
| AAATAAAGAAAACCTCCACT+TGG | + | chr4_2:47239049-47239068 | None:intergenic | 30.0% | |
| ! | GACAGATGTAATTTTCAACA+AGG | - | chr4_2:47239074-47239093 | Msa0603110:intron | 30.0% |
| !!! | CGGTTTTAGATTTAATCCTT+AGG | - | chr4_2:47239563-47239582 | Msa0603110:intron | 30.0% |
| !! | GTTATGTTTTTACAGAGTAC+TGG | - | chr4_2:47239807-47239826 | Msa0603110:intron | 30.0% |
| TGAAATGAAATATACCCAAG+AGG | + | chr4_2:47239854-47239873 | None:intergenic | 30.0% | |
| !! | ATAGGCTTTCATTTGTTGTA+AGG | - | chr4_2:47239904-47239923 | Msa0603110:intron | 30.0% |
| TGTAAGTGTATTGAGAAGTT+AGG | + | chr4_2:47240020-47240039 | None:intergenic | 30.0% | |
| TTCATACCAGAAAACATTTG+TGG | + | chr4_2:47240111-47240130 | None:intergenic | 30.0% | |
| !! | ATGTTTTCTGGTATGAATAC+CGG | - | chr4_2:47240114-47240133 | Msa0603110:intron | 30.0% |
| ! | AATTTTGCAAAAAGACAAGG+TGG | - | chr4_2:47240171-47240190 | Msa0603110:intron | 30.0% |
| TATTATATCCCATTTAGGAG+TGG | + | chr4_2:47240294-47240313 | None:intergenic | 30.0% | |
| TGGATAGGATAAAGTCATAT+TGG | + | chr4_2:47240415-47240434 | None:intergenic | 30.0% | |
| !!! | TGCCAAACTGTGTTTTTTAA+TGG | + | chr4_2:47240435-47240454 | None:intergenic | 30.0% |
| TGTTATTAAGACTGTCTTCA+TGG | - | chr4_2:47240466-47240485 | Msa0603110:intron | 30.0% | |
| GTTATTAAGACTGTCTTCAT+GGG | - | chr4_2:47240467-47240486 | Msa0603110:intron | 30.0% | |
| CATGTTTGGAAAATCAATCA+GGG | - | chr4_2:47240525-47240544 | Msa0603110:intron | 30.0% | |
| TTCTTACACGAAATATAGAC+TGG | + | chr4_2:47240614-47240633 | None:intergenic | 30.0% | |
| ATTTCGTGTAAGAATTCTAG+TGG | - | chr4_2:47240620-47240639 | Msa0603110:intron | 30.0% | |
| TTTCGTGTAAGAATTCTAGT+GGG | - | chr4_2:47240621-47240640 | Msa0603110:intron | 30.0% | |
| CAAAGAACATGCAAAAGAAA+TGG | + | chr4_2:47240710-47240729 | None:intergenic | 30.0% | |
| ! | GAGTTGGGATTTTATTAATG+CGG | - | chr4_2:47240824-47240843 | Msa0603110:intron | 30.0% |
| ACCATTGCATCATTATTCAT+AGG | + | chr4_2:47241018-47241037 | None:intergenic | 30.0% | |
| TCATTCACAAATATATCTGC+AGG | + | chr4_2:47241137-47241156 | None:intergenic | 30.0% | |
| TTTGTTTATGCTAACAGGTA+TGG | - | chr4_2:47241415-47241434 | Msa0603110:intron | 30.0% | |
| !! | TTGTATAGTTTTACTTCTCC+TGG | - | chr4_2:47241476-47241495 | Msa0603110:intron | 30.0% |
| CAATATTTCCTGTAATCAGT+TGG | + | chr4_2:47241779-47241798 | None:intergenic | 30.0% | |
| GCAAACTAATATGAACTTTG+TGG | + | chr4_2:47241879-47241898 | None:intergenic | 30.0% | |
| AAGATCGTGCTTATGAATTA+CGG | + | chr4_2:47241933-47241952 | None:intergenic | 30.0% | |
| ! | TTTTATGGTATCATACAGGT+TGG | - | chr4_2:47241999-47242018 | Msa0603110:intron | 30.0% |
| TTTATGGTATCATACAGGTT+GGG | - | chr4_2:47242000-47242019 | Msa0603110:intron | 30.0% | |
| !! | ATCTCATTAGTTTGTTCTTC+AGG | - | chr4_2:47242036-47242055 | Msa0603110:intron | 30.0% |
| ! | ACAATCTTTTACTCCTTACT+CGG | - | chr4_2:47242119-47242138 | Msa0603110:CDS | 30.0% |
| ! | GATATTTTCTACATGGGAAA+AGG | - | chr4_2:47242145-47242164 | Msa0603110:CDS | 30.0% |
| !!! | TGTTTTTTACACATCACATC+AGG | + | chr4_2:47242303-47242322 | None:intergenic | 30.0% |
| AGTCCAAGTAATATAATGTG+AGG | - | chr4_2:47242378-47242397 | Msa0603110:intron | 30.0% | |
| !!! | CTCGTTTAGTTGTTTTTAAG+TGG | + | chr4_2:47242415-47242434 | None:intergenic | 30.0% |
| CACTTAAAAACAACTAAACG+AGG | - | chr4_2:47242413-47242432 | Msa0603110:intron | 30.0% | |
| !! | GTTTTATGGTAACTTGGTGA+AGG | + | chr4_2:47237677-47237696 | None:intergenic | 35.0% |
| !! | TGATAAAGGTGTTTCTGGAT+CGG | - | chr4_2:47237909-47237928 | Msa0603110:three_prime_UTR | 35.0% |
| GATCGGGATTAGAATTTCTA+GGG | - | chr4_2:47237926-47237945 | Msa0603110:three_prime_UTR | 35.0% | |
| CGATTCATAAGAAGCTTCAA+CGG | - | chr4_2:47238035-47238054 | Msa0603110:exon | 35.0% | |
| GATTCATAAGAAGCTTCAAC+GGG | - | chr4_2:47238036-47238055 | Msa0603110:exon | 35.0% | |
| !!! | AACGGGTGAGTTTTTTTATG+CGG | - | chr4_2:47238053-47238072 | Msa0603110:CDS | 35.0% |
| !!! | TTTTGCTGATGTAGCTTTAG+AGG | - | chr4_2:47238201-47238220 | Msa0603110:intron | 35.0% |
| TGATTCAATAGCTATGAAGC+AGG | - | chr4_2:47238281-47238300 | Msa0603110:CDS | 35.0% | |
| ATAGCTATGAAGCAGGTATA+CGG | - | chr4_2:47238288-47238307 | Msa0603110:CDS | 35.0% | |
| TGTGATGTAATTGCATGTGT+CGG | - | chr4_2:47238437-47238456 | Msa0603110:intron | 35.0% | |
| ! | TTATCTTGTTTGCATGCTCA+TGG | - | chr4_2:47238591-47238610 | Msa0603110:CDS | 35.0% |
| !! | TTTATTTTCTTGATAGGGGG+TGG | - | chr4_2:47238977-47238996 | Msa0603110:intron | 35.0% |
| GCAAAACAAGAATTACCAAG+TGG | - | chr4_2:47239031-47239050 | Msa0603110:CDS | 35.0% | |
| AAACAAGAATTACCAAGTGG+AGG | - | chr4_2:47239034-47239053 | Msa0603110:CDS | 35.0% | |
| AGCACATCATAGAAACACAA+CGG | + | chr4_2:47239141-47239160 | None:intergenic | 35.0% | |
| TACATACCCATTTGTGAAAC+AGG | + | chr4_2:47239263-47239282 | None:intergenic | 35.0% | |
| ATAGTATGGCCATTAATTGC+TGG | - | chr4_2:47239339-47239358 | Msa0603110:intron | 35.0% | |
| TGAACCTGGTTATGATCATT+TGG | - | chr4_2:47239489-47239508 | Msa0603110:intron | 35.0% | |
| TACTCCAAATGATCATAACC+AGG | + | chr4_2:47239496-47239515 | None:intergenic | 35.0% | |
| ACAAACAGCTAAGTGAAAAC+GGG | + | chr4_2:47239529-47239548 | None:intergenic | 35.0% | |
| GACAAACAGCTAAGTGAAAA+CGG | + | chr4_2:47239530-47239549 | None:intergenic | 35.0% | |
| GTTTGTCAAATGCTTGAAAC+CGG | - | chr4_2:47239543-47239562 | Msa0603110:CDS | 35.0% | |
| !!! | TTATTCCCGTTCTGTTTTTG+AGG | - | chr4_2:47239875-47239894 | Msa0603110:intron | 35.0% |
| !!! | TATTCCCGTTCTGTTTTTGA+GGG | - | chr4_2:47239876-47239895 | Msa0603110:intron | 35.0% |
| AAACCTCTACTATGATAGAG+TGG | - | chr4_2:47240493-47240512 | Msa0603110:intron | 35.0% | |
| AACCTCTACTATGATAGAGT+GGG | - | chr4_2:47240494-47240513 | Msa0603110:intron | 35.0% | |
| !! | CCTGATTGATTTTCCAAACA+TGG | + | chr4_2:47240527-47240546 | None:intergenic | 35.0% |
| CCATGTTTGGAAAATCAATC+AGG | - | chr4_2:47240524-47240543 | Msa0603110:intron | 35.0% | |
| !!! | TTGTTTTTGGTGACATGTAC+AGG | - | chr4_2:47240559-47240578 | Msa0603110:intron | 35.0% |
| GAATCTTATTCAATCGAGTG+TGG | + | chr4_2:47240777-47240796 | None:intergenic | 35.0% | |
| ATTGAATAAGATTCCTCTCC+AGG | - | chr4_2:47240783-47240802 | Msa0603110:intron | 35.0% | |
| TAAAACTGATAGGGTATACC+TGG | + | chr4_2:47240804-47240823 | None:intergenic | 35.0% | |
| !!! | TACCCTATCAGTTTTAGAGT+TGG | - | chr4_2:47240808-47240827 | Msa0603110:intron | 35.0% |
| !!! | ACCCTATCAGTTTTAGAGTT+GGG | - | chr4_2:47240809-47240828 | Msa0603110:intron | 35.0% |
| !! | TCCCAACTCTAAAACTGATA+GGG | + | chr4_2:47240813-47240832 | None:intergenic | 35.0% |
| !! | ATCCCAACTCTAAAACTGAT+AGG | + | chr4_2:47240814-47240833 | None:intergenic | 35.0% |
| ! | ATATGTATCTTTTGCTCTCG+AGG | - | chr4_2:47240946-47240965 | Msa0603110:CDS | 35.0% |
| TTACAATTCAGGTAGCCATT+CGG | - | chr4_2:47240980-47240999 | Msa0603110:CDS | 35.0% | |
| GCCTATGAATAATGATGCAA+TGG | - | chr4_2:47241014-47241033 | Msa0603110:CDS | 35.0% | |
| AGAAAGCAGTTTGGAAAACA+GGG | + | chr4_2:47241103-47241122 | None:intergenic | 35.0% | |
| AAGAAAGCAGTTTGGAAAAC+AGG | + | chr4_2:47241104-47241123 | None:intergenic | 35.0% | |
| TTCCAAACTGCTTTCTTAGT+TGG | - | chr4_2:47241107-47241126 | Msa0603110:intron | 35.0% | |
| TGTGAATGAACTTACTGATC+AGG | - | chr4_2:47241148-47241167 | Msa0603110:intron | 35.0% | |
| AATTTCTTCATATGAGCCAG+AGG | + | chr4_2:47241212-47241231 | None:intergenic | 35.0% | |
| TTACCAGCTTCAAAAGCTAA+AGG | - | chr4_2:47241267-47241286 | Msa0603110:intron | 35.0% | |
| TTCAGAAATTAAGGTCCTTC+AGG | - | chr4_2:47241315-47241334 | Msa0603110:intron | 35.0% | |
| TCAGAAATTAAGGTCCTTCA+GGG | - | chr4_2:47241316-47241335 | Msa0603110:intron | 35.0% | |
| AACCATTCAGGTGCAATAAT+TGG | - | chr4_2:47241348-47241367 | Msa0603110:intron | 35.0% | |
| !! | TATAGTTTTACTTCTCCTGG+TGG | - | chr4_2:47241479-47241498 | Msa0603110:intron | 35.0% |
| !! | AGCACTGGATTTTCTTTTTC+CGG | - | chr4_2:47241544-47241563 | Msa0603110:intron | 35.0% |
| !!! | TAGGAAATGTTTTTTTGGGC+TGG | + | chr4_2:47241640-47241659 | None:intergenic | 35.0% |
| CTGGAAAATTGTACTCTGAT+AGG | + | chr4_2:47241659-47241678 | None:intergenic | 35.0% | |
| ! | CTATCAGAGTACAATTTTCC+AGG | - | chr4_2:47241657-47241676 | Msa0603110:intron | 35.0% |
| !!! | TTTGAGGTCTTTTTTATGGG+TGG | - | chr4_2:47241715-47241734 | Msa0603110:intron | 35.0% |
| TTATGGGTGGTATTATATGC+TGG | - | chr4_2:47241728-47241747 | Msa0603110:intron | 35.0% | |
| AAAGGGAAAAAGTAACCATC+TGG | + | chr4_2:47241820-47241839 | None:intergenic | 35.0% | |
| TTATTTAGCAGACAAGTACC+TGG | + | chr4_2:47241966-47241985 | None:intergenic | 35.0% | |
| ACTTTGTGATTTCCTGCATT+CGG | - | chr4_2:47242096-47242115 | Msa0603110:intron | 35.0% | |
| ! | CAATCTTTTACTCCTTACTC+GGG | - | chr4_2:47242120-47242139 | Msa0603110:CDS | 35.0% |
| AGAAAATATCAACCCGAGTA+AGG | + | chr4_2:47242135-47242154 | None:intergenic | 35.0% | |
| !!! | TCGGGTTGATATTTTCTACA+TGG | - | chr4_2:47242138-47242157 | Msa0603110:CDS | 35.0% |
| !!! | CGGGTTGATATTTTCTACAT+GGG | - | chr4_2:47242139-47242158 | Msa0603110:CDS | 35.0% |
| !!! | CGTCTATTGTGTTTTTGGTT+TGG | + | chr4_2:47242174-47242193 | None:intergenic | 35.0% |
| ! | ATGGACGTCTATTGTGTTTT+TGG | + | chr4_2:47242179-47242198 | None:intergenic | 35.0% |
| ! | TTTTTACACATCACATCAGG+TGG | + | chr4_2:47242300-47242319 | None:intergenic | 35.0% |
| TTCACTGTATGGCTTAGAAT+AGG | - | chr4_2:47242349-47242368 | Msa0603110:five_prime_UTR | 35.0% | |
| TGAAGAATAGCGTAGAAACG+TGG | + | chr4_2:47237651-47237670 | None:intergenic | 40.0% | |
| ACAAAGGTAGAAGAAGGTAG+CGG | - | chr4_2:47237773-47237792 | Msa0603110:three_prime_UTR | 40.0% | |
| !! | GATAAAGGTGTTTCTGGATC+GGG | - | chr4_2:47237910-47237929 | Msa0603110:three_prime_UTR | 40.0% |
| GGATCGGGATTAGAATTTCT+AGG | - | chr4_2:47237925-47237944 | Msa0603110:three_prime_UTR | 40.0% | |
| TCGAGATAACCGGAATTTCT+CGG | + | chr4_2:47238001-47238020 | None:intergenic | 40.0% | |
| GTGATGTAATTGCATGTGTC+GGG | - | chr4_2:47238438-47238457 | Msa0603110:intron | 40.0% | |
| AGAATGACTCTTCAAGTCGA+AGG | + | chr4_2:47238475-47238494 | None:intergenic | 40.0% | |
| ! | AAGCATGATAGTGTTGTGCA+TGG | - | chr4_2:47238567-47238586 | Msa0603110:intron | 40.0% |
| TTCTCCTGTAATTTACGCCA+TGG | - | chr4_2:47239110-47239129 | Msa0603110:intron | 40.0% | |
| TTTGTACAAGTGCCTGAAAG+TGG | - | chr4_2:47239171-47239190 | Msa0603110:CDS | 40.0% | |
| TGGACAATCATGTCAAGGAT+GGG | + | chr4_2:47239201-47239220 | None:intergenic | 40.0% | |
| TTGGACAATCATGTCAAGGA+TGG | + | chr4_2:47239202-47239221 | None:intergenic | 40.0% | |
| AGAGTTGGACAATCATGTCA+AGG | + | chr4_2:47239206-47239225 | None:intergenic | 40.0% | |
| TTGACATGATTGTCCAACTC+TGG | - | chr4_2:47239205-47239224 | Msa0603110:intron | 40.0% | |
| TTAGCCTCCTGTTTCACAAA+TGG | - | chr4_2:47239253-47239272 | Msa0603110:intron | 40.0% | |
| TAGCCTCCTGTTTCACAAAT+GGG | - | chr4_2:47239254-47239273 | Msa0603110:intron | 40.0% | |
| ATACCCATTTGTGAAACAGG+AGG | + | chr4_2:47239260-47239279 | None:intergenic | 40.0% | |
| ! | AAGAGTCACTCTTGATGACA+TGG | - | chr4_2:47239397-47239416 | Msa0603110:intron | 40.0% |
| TAGTATGCACTGAGTTCCTA+AGG | + | chr4_2:47239582-47239601 | None:intergenic | 40.0% | |
| !! | TACAGAGTACTGGTTTGAGA+TGG | - | chr4_2:47239817-47239836 | Msa0603110:intron | 40.0% |
| !! | ACAGAGTACTGGTTTGAGAT+GGG | - | chr4_2:47239818-47239837 | Msa0603110:intron | 40.0% |
| !!! | ATTCCCGTTCTGTTTTTGAG+GGG | - | chr4_2:47239877-47239896 | Msa0603110:intron | 40.0% |
| TAACCCCTCAAAAACAGAAC+GGG | + | chr4_2:47239883-47239902 | None:intergenic | 40.0% | |
| GTAACCCCTCAAAAACAGAA+CGG | + | chr4_2:47239884-47239903 | None:intergenic | 40.0% | |
| !!! | CTGTTTTTGAGGGGTTACAT+AGG | - | chr4_2:47239886-47239905 | Msa0603110:intron | 40.0% |
| !! | ATAATCCAGAAGTGCTCCTT+CGG | - | chr4_2:47240060-47240079 | Msa0603110:CDS | 40.0% |
| TATTCATCTGCCCTAGTTCA+AGG | - | chr4_2:47240083-47240102 | Msa0603110:CDS | 40.0% | |
| ATTTGTGGCACCTTGAACTA+GGG | + | chr4_2:47240096-47240115 | None:intergenic | 40.0% | |
| !! | AAGGTGCCACAAATGTTTTC+TGG | - | chr4_2:47240102-47240121 | Msa0603110:intron | 40.0% |
| ! | GCAAAAAGACAAGGTGGATT+TGG | - | chr4_2:47240177-47240196 | Msa0603110:intron | 40.0% |
| TATCCCATTTAGGAGTGGAT+TGG | + | chr4_2:47240289-47240308 | None:intergenic | 40.0% | |
| !! | CCAAGAGGTACTGAATTTGA+GGG | + | chr4_2:47240738-47240757 | None:intergenic | 40.0% |
| !! | TCCAAGAGGTACTGAATTTG+AGG | + | chr4_2:47240739-47240758 | None:intergenic | 40.0% |
| GTAATGCAACATCATCCAAG+AGG | + | chr4_2:47240753-47240772 | None:intergenic | 40.0% | |
| TGCGGCCAACAATTGTTTAT+AGG | - | chr4_2:47240842-47240861 | Msa0603110:intron | 40.0% | |
| !! | TCTACTTTTGTCGCAAGCAA+TGG | - | chr4_2:47240877-47240896 | Msa0603110:intron | 40.0% |
| CTACTTTCCGTTGAACTATC+AGG | - | chr4_2:47240914-47240933 | Msa0603110:CDS | 40.0% | |
| AATATTATCCTCTCTGCAGC+TGG | - | chr4_2:47241050-47241069 | Msa0603110:CDS | 40.0% | |
| CAAACTGCTTTCTTAGTTGG+CGG | - | chr4_2:47241110-47241129 | Msa0603110:intron | 40.0% | |
| TTCATATGAGCCAGAGGATA+CGG | + | chr4_2:47241206-47241225 | None:intergenic | 40.0% | |
| GTCCAATTATTGCACCTGAA+TGG | + | chr4_2:47241353-47241372 | None:intergenic | 40.0% | |
| TCAGGTGCAATAATTGGACA+TGG | - | chr4_2:47241354-47241373 | Msa0603110:intron | 40.0% | |
| CAATAATGAAAGATGGGACC+TGG | + | chr4_2:47241678-47241697 | None:intergenic | 40.0% | |
| AGTTTGCAACATAGCACTAG+TGG | - | chr4_2:47241892-47241911 | Msa0603110:intron | 40.0% | |
| ACAAACTAATGAGATGCCGA+GGG | + | chr4_2:47242031-47242050 | None:intergenic | 40.0% | |
| AACAAACTAATGAGATGCCG+AGG | + | chr4_2:47242032-47242051 | None:intergenic | 40.0% | |
| AATCACAAAGTTCCAGCAAG+AGG | + | chr4_2:47242087-47242106 | None:intergenic | 40.0% | |
| GTAAAAGATTGTCCGAATGC+AGG | + | chr4_2:47242111-47242130 | None:intergenic | 40.0% | |
| CATAATACCCTCGAGACATA+TGG | + | chr4_2:47242198-47242217 | None:intergenic | 40.0% | |
| ! | TAGCGTCGGACATTTCTGAT+CGG | + | chr4_2:47237970-47237989 | None:intergenic | 45.0% |
| AGATAACCGGAATTTCTCGG+CGG | + | chr4_2:47237998-47238017 | None:intergenic | 45.0% | |
| !! | AGAGAGAGCATCGAGATAAC+CGG | + | chr4_2:47238011-47238030 | None:intergenic | 45.0% |
| !!! | TGTTTTGATGCTACAGGCCT+TGG | - | chr4_2:47238141-47238160 | Msa0603110:intron | 45.0% |
| CCATCCATGGCGTAAATTAC+AGG | + | chr4_2:47239117-47239136 | None:intergenic | 45.0% | |
| CCTGTAATTTACGCCATGGA+TGG | - | chr4_2:47239114-47239133 | Msa0603110:intron | 45.0% | |
| !! | AGGATGGGTTTTCCACTTTC+AGG | + | chr4_2:47239186-47239205 | None:intergenic | 45.0% |
| ! | CAAATGACTGACTCCAGAGT+TGG | + | chr4_2:47239221-47239240 | None:intergenic | 45.0% |
| !! | AGTACTGGTTTGAGATGGGA+TGG | - | chr4_2:47239822-47239841 | Msa0603110:intron | 45.0% |
| !!! | ATGGGATGGTTTTGTCCTCT+TGG | - | chr4_2:47239836-47239855 | Msa0603110:intron | 45.0% |
| !!! | TGGGATGGTTTTGTCCTCTT+GGG | - | chr4_2:47239837-47239856 | Msa0603110:intron | 45.0% |
| CATTTGTGGCACCTTGAACT+AGG | + | chr4_2:47240097-47240116 | None:intergenic | 45.0% | |
| ! | CAAGGTGGATTTGGATTTGC+TGG | - | chr4_2:47240186-47240205 | Msa0603110:intron | 45.0% |
| GCTCCAATCCACTCCTAAAT+GGG | - | chr4_2:47240283-47240302 | Msa0603110:CDS | 45.0% | |
| TGCCCACTCTATCATAGTAG+AGG | + | chr4_2:47240499-47240518 | None:intergenic | 45.0% | |
| CCCTCAAATTCAGTACCTCT+TGG | - | chr4_2:47240735-47240754 | Msa0603110:intron | 45.0% | |
| AGGCTAATGACATCTCCGAA+TGG | + | chr4_2:47240998-47241017 | None:intergenic | 45.0% | |
| CGCCAACTAAGAAAGCAGTT+TGG | + | chr4_2:47241112-47241131 | None:intergenic | 45.0% | |
| ACGGCTCTCATTTGTGAACA+AGG | + | chr4_2:47241187-47241206 | None:intergenic | 45.0% | |
| !!! | CCACCTTTAGCTTTTGAAGC+TGG | + | chr4_2:47241273-47241292 | None:intergenic | 45.0% |
| CCAGCTTCAAAAGCTAAAGG+TGG | - | chr4_2:47241270-47241289 | Msa0603110:intron | 45.0% | |
| GAAAGATAATGCAGCAGCAC+AGG | + | chr4_2:47241298-47241317 | None:intergenic | 45.0% | |
| ! | TGGTTGATGTAGTACCCTGA+AGG | + | chr4_2:47241333-47241352 | None:intergenic | 45.0% |
| GGGTACTACATCAACCATTC+AGG | - | chr4_2:47241336-47241355 | Msa0603110:intron | 45.0% | |
| AAGAATGGCTTAGCTGAGTC+AGG | + | chr4_2:47241396-47241415 | None:intergenic | 45.0% | |
| AAGAAAATCCAGTGCTTCCC+AGG | + | chr4_2:47241540-47241559 | None:intergenic | 45.0% | |
| ACAAAGTTCCAGCAAGAGGA+TGG | + | chr4_2:47242083-47242102 | None:intergenic | 45.0% | |
| ATAGACGTCCATATGTCTCG+AGG | - | chr4_2:47242187-47242206 | Msa0603110:five_prime_UTR | 45.0% | |
| TAGACGTCCATATGTCTCGA+GGG | - | chr4_2:47242188-47242207 | Msa0603110:five_prime_UTR | 45.0% | |
| TATCAGAGGGTCAAGAAGCA+AGG | + | chr4_2:47242266-47242285 | None:intergenic | 45.0% | |
| !! | TTTATTTAAATATTGATATT+TGG | - | chr4_2:47237872-47237891 | Msa0603110:three_prime_UTR | 5.0% |
| AATTCGCCGCCGAGAAATTC+CGG | - | chr4_2:47237989-47238008 | Msa0603110:three_prime_UTR | 50.0% | |
| !! | GCAGAGGCGTAATTTGTTGC+AGG | - | chr4_2:47238174-47238193 | Msa0603110:intron | 50.0% |
| !! | GAGGTTGATGATCGAGCCAA+AGG | - | chr4_2:47238220-47238239 | Msa0603110:intron | 50.0% |
| TGACACTGGCACATCAACAC+TGG | - | chr4_2:47238385-47238404 | Msa0603110:intron | 50.0% | |
| TAATTGCATGTGTCGGGCAG+CGG | - | chr4_2:47238444-47238463 | Msa0603110:intron | 50.0% | |
| GAAACACAACGGACCATCCA+TGG | + | chr4_2:47239130-47239149 | None:intergenic | 50.0% | |
| ATGCTCAGTGTCTCTGAACC+TGG | - | chr4_2:47239475-47239494 | Msa0603110:intron | 50.0% | |
| !! | GAATACCGAAGGAGCACTTC+TGG | + | chr4_2:47240068-47240087 | None:intergenic | 50.0% |
| CTAGGGCAGATGAATACCGA+AGG | + | chr4_2:47240079-47240098 | None:intergenic | 50.0% | |
| CGCTCCAATCCACTCCTAAA+TGG | - | chr4_2:47240282-47240301 | Msa0603110:CDS | 50.0% | |
| ! | AGTGGGCATTGTGCCATGTT+TGG | - | chr4_2:47240511-47240530 | Msa0603110:intron | 50.0% |
| CTGATAGGGTATACCTGGAG+AGG | + | chr4_2:47240799-47240818 | None:intergenic | 50.0% | |
| CGCTGAGCCTGATAGTTCAA+CGG | + | chr4_2:47240924-47240943 | None:intergenic | 50.0% | |
| CAAATGAGAGCCGTATCCTC+TGG | - | chr4_2:47241193-47241212 | Msa0603110:intron | 50.0% | |
| ! | ACAGCTCTAGTCGGGTACAT+TGG | + | chr4_2:47241506-47241525 | None:intergenic | 50.0% |
| ! | CATGACGAACAGCTCTAGTC+GGG | + | chr4_2:47241514-47241533 | None:intergenic | 50.0% |
| ! | GCATGACGAACAGCTCTAGT+CGG | + | chr4_2:47241515-47241534 | None:intergenic | 50.0% |
| ACGATCTTCATGCAGACACC+AGG | - | chr4_2:47241945-47241964 | Msa0603110:CDS | 50.0% | |
| CAAGAGGATGGCCAATACCA+TGG | + | chr4_2:47242071-47242090 | None:intergenic | 50.0% | |
| TGGTTGGCAAGAGATGACTC+GGG | + | chr4_2:47242234-47242253 | None:intergenic | 50.0% | |
| CTGGTTGGCAAGAGATGACT+CGG | + | chr4_2:47242235-47242254 | None:intergenic | 50.0% | |
| ! | AAGAAGCAAGGCATTCGAGC+TGG | + | chr4_2:47242254-47242273 | None:intergenic | 50.0% |
| CCTCTGCGACGAATTTGCCA+AGG | + | chr4_2:47238161-47238180 | None:intergenic | 55.0% | |
| CCTTGGCAAATTCGTCGCAG+AGG | - | chr4_2:47238158-47238177 | Msa0603110:intron | 55.0% | |
| ! | CGACTTTTCCAGCTGCAGAG+AGG | + | chr4_2:47241061-47241080 | None:intergenic | 55.0% |
| AGCTGTTCGTCATGCTGCCT+GGG | - | chr4_2:47241520-47241539 | Msa0603110:intron | 55.0% | |
| ! | TACAGGTTGGGCAGTACCCT+CGG | - | chr4_2:47242012-47242031 | Msa0603110:intron | 55.0% |
| !! | GGTATTGGCCATCCTCTTGC+TGG | - | chr4_2:47242072-47242091 | Msa0603110:intron | 55.0% |
| ! | AGCAAGGCATTCGAGCTGGT+TGG | + | chr4_2:47242250-47242269 | None:intergenic | 55.0% |
| TCTCGGCGGCGAATTAGCGT+CGG | + | chr4_2:47237984-47238003 | None:intergenic | 60.0% | |
| CACGGACACGACACTGACAC+TGG | - | chr4_2:47238371-47238390 | Msa0603110:intron | 60.0% | |
| GTCGGGTACATTGGACCACC+AGG | + | chr4_2:47241497-47241516 | None:intergenic | 60.0% | |
| GAGCTGTTCGTCATGCTGCC+TGG | - | chr4_2:47241519-47241538 | Msa0603110:intron | 60.0% | |
| ! | TCATGCTGCCTGGGAAGCAC+TGG | - | chr4_2:47241529-47241548 | Msa0603110:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 47237565 | 47242589 | 47237565 | ID=Msa0603110;Name=Msa0603110 |
| chr4_2 | mRNA | 47237565 | 47242589 | 47237565 | ID=Msa0603110-mRNA-1;Parent=Msa0603110;Name=Msa0603110-mRNA-1;_AED=0.22;_eAED=0.22;_QI=376|0.69|0.85|0.92|0.92|0.85|14|485|396 |
| chr4_2 | exon | 47237565 | 47238137 | 47237565 | ID=Msa0603110-mRNA-1:exon:10836;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47238233 | 47238333 | 47238233 | ID=Msa0603110-mRNA-1:exon:10835;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47238589 | 47238722 | 47238589 | ID=Msa0603110-mRNA-1:exon:10834;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47238817 | 47238880 | 47238817 | ID=Msa0603110-mRNA-1:exon:10833;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47238985 | 47239085 | 47238985 | ID=Msa0603110-mRNA-1:exon:10832;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47239164 | 47239218 | 47239164 | ID=Msa0603110-mRNA-1:exon:10831;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47239350 | 47239406 | 47239350 | ID=Msa0603110-mRNA-1:exon:10830;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47239528 | 47239573 | 47239528 | ID=Msa0603110-mRNA-1:exon:10829;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47240031 | 47240113 | 47240031 | ID=Msa0603110-mRNA-1:exon:10828;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47240234 | 47240332 | 47240234 | ID=Msa0603110-mRNA-1:exon:10827;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47240879 | 47241075 | 47240879 | ID=Msa0603110-mRNA-1:exon:10826;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47241913 | 47241997 | 47241913 | ID=Msa0603110-mRNA-1:exon:10825;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47242097 | 47242391 | 47242097 | ID=Msa0603110-mRNA-1:exon:10824;Parent=Msa0603110-mRNA-1 |
| chr4_2 | exon | 47242428 | 47242589 | 47242428 | ID=Msa0603110-mRNA-1:exon:10823;Parent=Msa0603110-mRNA-1 |
| chr4_2 | five_prime_UTR | 47242428 | 47242589 | 47242428 | ID=Msa0603110-mRNA-1:five_prime_utr;Parent=Msa0603110-mRNA-1 |
| chr4_2 | five_prime_UTR | 47242178 | 47242391 | 47242178 | ID=Msa0603110-mRNA-1:five_prime_utr;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47242097 | 47242177 | 47242097 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47241913 | 47241997 | 47241913 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47240879 | 47241075 | 47240879 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47240234 | 47240332 | 47240234 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47240031 | 47240113 | 47240031 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47239528 | 47239573 | 47239528 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47239350 | 47239406 | 47239350 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47239164 | 47239218 | 47239164 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47238985 | 47239085 | 47238985 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47238817 | 47238880 | 47238817 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47238589 | 47238722 | 47238589 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47238233 | 47238333 | 47238233 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | CDS | 47238050 | 47238137 | 47238050 | ID=Msa0603110-mRNA-1:cds;Parent=Msa0603110-mRNA-1 |
| chr4_2 | three_prime_UTR | 47237565 | 47238049 | 47237565 | ID=Msa0603110-mRNA-1:three_prime_utr;Parent=Msa0603110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
