Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683950 | XP_003606657.1 | 90.634 | 363 | 9 | 2 | 1 | 343 | 1 | 358 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683950 | G7JUS4 | 90.634 | 363 | 9 | 2 | 1 | 343 | 1 | 358 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036140 | Msa0683950 | -0.815473 | 9.079395e-52 | -8.615850e-47 |
| Msa0603110 | Msa0683950 | 0.964059 | 7.488581e-123 | -8.615850e-47 |
| Msa0644130 | Msa0683950 | 0.931565 | 3.130104e-94 | -8.615850e-47 |
| Msa0658570 | Msa0683950 | -0.826540 | 2.565030e-54 | -8.615850e-47 |
| Msa0672690 | Msa0683950 | -0.806233 | 9.088212e-50 | -8.615850e-47 |
| Msa0683950 | Msa0703490 | -0.801722 | 7.872489e-49 | -8.615850e-47 |
| Msa0683950 | Msa0807030 | -0.804226 | 2.391684e-49 | -8.615850e-47 |
| Msa0683950 | Msa0820770 | -0.804132 | 2.501823e-49 | -8.615850e-47 |
| Msa0683950 | Msa0832970 | -0.803118 | 4.061410e-49 | -8.615850e-47 |
| Msa0683950 | Msa0861090 | -0.803891 | 2.807209e-49 | -8.615850e-47 |
| Msa0683950 | Msa1018990 | 0.850928 | 1.236197e-60 | -8.615850e-47 |
| Msa0683950 | Msa1041730 | -0.810142 | 1.335271e-50 | -8.615850e-47 |
| Msa0683950 | Msa1124540 | 0.810807 | 9.593260e-51 | -8.615850e-47 |
| Msa0683950 | Msa1376890 | -0.825907 | 3.629455e-54 | -8.615850e-47 |
| Msa0433410 | Msa0683950 | 0.811666 | 6.246485e-51 | -8.615850e-47 |
| Msa0275690 | Msa0683950 | -0.805672 | 1.192011e-49 | -8.615850e-47 |
| Msa0548090 | Msa0683950 | 0.986426 | 9.539853e-167 | -8.615850e-47 |
| Msa0567020 | Msa0683950 | -0.803041 | 4.211993e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683950 | MtrunA17_Chr4g0031101 | 90.634 | 363 | 9 | 2 | 1 | 343 | 1 | 358 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683950 | AT5G59960.1 | 70.435 | 345 | 77 | 2 | 12 | 336 | 16 | 355 | 4.42e-179 | 500 |
| Msa0683950 | AT5G59960.3 | 79.688 | 256 | 47 | 1 | 81 | 336 | 1 | 251 | 5.98e-152 | 427 |
| Msa0683950 | AT5G59960.2 | 70.307 | 293 | 67 | 1 | 12 | 284 | 16 | 308 | 2.67e-149 | 423 |
Find 99 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTAAATATTGATATT+TGG | 0.200322 | 4_4:-47013069 | Msa0683950:five_prime_UTR |
| GAAAATGATAAAGGTGTTTC+TGG | 0.205030 | 4_4:-47013037 | Msa0683950:five_prime_UTR |
| TGATAATGTGTTGTTTAAAA+TGG | 0.218863 | 4_4:+47013350 | None:intergenic |
| GCATTATCTTTCAGAAATTA+AGG | 0.220788 | 4_4:-47009629 | Msa0683950:CDS |
| TTCAGAAATTAAGGTCCTTC+AGG | 0.292111 | 4_4:-47009620 | Msa0683950:CDS |
| GAATACCGAAGGAGCACTTC+TGG | 0.300314 | 4_4:+47010870 | None:intergenic |
| GGATCGGGATTAGAATTTCT+AGG | 0.322758 | 4_4:-47013016 | Msa0683950:five_prime_UTR |
| GGTATTGGCCATCCTCTTGC+TGG | 0.327491 | 4_4:-47008863 | Msa0683950:CDS |
| TTCCAAACTGCTTTCTTAGT+TGG | 0.343184 | 4_4:-47009828 | Msa0683950:CDS |
| AAGAAAGCAGTTTGGAAAAC+AGG | 0.345106 | 4_4:+47009834 | None:intergenic |
| ATCTCATTAGTTTGTTCTTC+AGG | 0.350126 | 4_4:-47008899 | Msa0683950:CDS |
| TACATACCCATTTGTGAAAC+AGG | 0.360149 | 4_4:+47011677 | None:intergenic |
| AATTCGCCGCCGAGAAATTC+CGG | 0.371340 | 4_4:-47012952 | Msa0683950:CDS |
| TTTCCTCACATTATATTACT+TGG | 0.371935 | 4_4:+47008554 | None:intergenic |
| CCATCCATGGTGTAAATTAC+AGG | 0.372572 | 4_4:+47011823 | None:intergenic |
| GGTTGCTTTATCCATGGTAT+TGG | 0.378782 | 4_4:-47008878 | Msa0683950:CDS |
| CATTTGTGGCACCTTGAACT+AGG | 0.386213 | 4_4:+47010841 | None:intergenic |
| CCCTCAAATTCAGTACCTCT+TGG | 0.387643 | 4_4:-47010200 | Msa0683950:intron |
| TTAGCCTCCTGTTTCACAAA+TGG | 0.406813 | 4_4:-47011684 | Msa0683950:CDS |
| GAGCTGTTCGTCATGCTGCC+TGG | 0.412460 | 4_4:-47009416 | Msa0683950:CDS |
| TTCACTGTATGGCTTAGAAT+AGG | 0.416346 | 4_4:-47008586 | Msa0683950:three_prime_UTR |
| TAGCCTCCTGTTTCACAAAT+GGG | 0.426157 | 4_4:-47011683 | Msa0683950:intron |
| AGAGAGAGCATCGAGATAAC+CGG | 0.433517 | 4_4:+47012933 | None:intergenic |
| GATAAAGGTGTTTCTGGATC+GGG | 0.436527 | 4_4:-47013031 | Msa0683950:five_prime_UTR |
| ATTTGTGGCACCTTGAACTA+GGG | 0.437158 | 4_4:+47010842 | None:intergenic |
| AAGAAAATCCAGTGCTTCCC+AGG | 0.438344 | 4_4:+47009398 | None:intergenic |
| TCAGAAATTAAGGTCCTTCA+GGG | 0.439567 | 4_4:-47009619 | Msa0683950:intron |
| TATTCATCTGCCCTAGTTCA+AGG | 0.439663 | 4_4:-47010852 | Msa0683950:CDS |
| ACTTTGTGATTTCCTGCATT+CGG | 0.440801 | 4_4:-47008839 | Msa0683950:CDS |
| TCGAGATAACCGGAATTTCT+CGG | 0.441952 | 4_4:+47012943 | None:intergenic |
| AAGATTCTAGAAAATGATAA+AGG | 0.447440 | 4_4:-47013046 | Msa0683950:five_prime_UTR |
| AATGATTGAATTGATGATGT+TGG | 0.448393 | 4_4:+47013308 | None:intergenic |
| TTACCAGCTTCAAAAGCTAA+AGG | 0.450026 | 4_4:-47009668 | Msa0683950:intron |
| TGTGAATGAACTTACTGATC+AGG | 0.450938 | 4_4:-47009787 | Msa0683950:intron |
| CATAATACCCTCGAGACATA+TGG | 0.450973 | 4_4:+47008740 | None:intergenic |
| AGCTGTTCGTCATGCTGCCT+GGG | 0.455494 | 4_4:-47009415 | Msa0683950:CDS |
| AGAAAATATCAACCCGAGTA+AGG | 0.461893 | 4_4:+47008803 | None:intergenic |
| CAAACTGCTTTCTTAGTTGG+CGG | 0.463190 | 4_4:-47009825 | Msa0683950:CDS |
| TCATGCTGCCTGGGAAGCAC+TGG | 0.468375 | 4_4:-47009406 | Msa0683950:CDS |
| CGCCAACTAAGAAAGCAGTT+TGG | 0.468480 | 4_4:+47009826 | None:intergenic |
| ATAATCCAGAAGTGCTCCTT+CGG | 0.475177 | 4_4:-47010875 | Msa0683950:CDS |
| ATGATTGAATTGATGATGTT+GGG | 0.478657 | 4_4:+47013309 | None:intergenic |
| ATTGAATAAGATTCCTCTCC+AGG | 0.480234 | 4_4:-47010152 | Msa0683950:intron |
| TCTTCAGGTTGCTTTATCCA+TGG | 0.482081 | 4_4:-47008884 | Msa0683950:CDS |
| CTGGTTGGCAAGAGATGACT+CGG | 0.490132 | 4_4:+47008703 | None:intergenic |
| GATCGGGATTAGAATTTCTA+GGG | 0.497344 | 4_4:-47013015 | Msa0683950:five_prime_UTR |
| TTTGTACAAGTGCCTGAAAG+TGG | 0.498510 | 4_4:-47011766 | Msa0683950:CDS |
| GAAAGATAATGCAGCAGCAC+AGG | 0.500851 | 4_4:+47009640 | None:intergenic |
| TGGTAACTTGGTCTTGGTGA+AGG | 0.504991 | 4_4:+47013239 | None:intergenic |
| TGATAAAGGTGTTTCTGGAT+CGG | 0.506894 | 4_4:-47013032 | Msa0683950:five_prime_UTR |
| TTGACATGATTGTCCAACTC+TGG | 0.511635 | 4_4:-47011732 | Msa0683950:CDS |
| TACAGGTTGGGCAGTACCCT+CGG | 0.514602 | 4_4:-47008923 | Msa0683950:intron |
| TTCATACCAGAAAACATTTG+TGG | 0.519635 | 4_4:+47010827 | None:intergenic |
| CATGACGAACAGCTCTAGTC+GGG | 0.524027 | 4_4:+47009424 | None:intergenic |
| TTGGACAATCATGTCAAGGA+TGG | 0.533101 | 4_4:+47011738 | None:intergenic |
| CCTGTAATTTACACCATGGA+TGG | 0.535613 | 4_4:-47011823 | Msa0683950:CDS |
| GATTCATAAGAAGCTTCAAC+GGG | 0.542429 | 4_4:-47012905 | Msa0683950:intron |
| GTAAAAGATTGTCCGAATGC+AGG | 0.543724 | 4_4:+47008827 | None:intergenic |
| TCATTCACAAATATATCTGC+AGG | 0.545748 | 4_4:+47009801 | None:intergenic |
| CAAATGACTGACTCCAGAGT+TGG | 0.548174 | 4_4:+47011719 | None:intergenic |
| AACACAACAAAGGTAGAAGA+AGG | 0.555046 | 4_4:-47013175 | Msa0683950:five_prime_UTR |
| TTCTTACACGAAATATAGAC+TGG | 0.556069 | 4_4:+47010324 | None:intergenic |
| ACAGCTCTAGTCGGGTACAT+TGG | 0.557826 | 4_4:+47009432 | None:intergenic |
| GAAACACAACGGACCATCCA+TGG | 0.558578 | 4_4:+47011810 | None:intergenic |
| AACAAACTAATGAGATGCCG+AGG | 0.563733 | 4_4:+47008906 | None:intergenic |
| AAGAAGCAAGGCATTCGAGC+TGG | 0.571008 | 4_4:+47008684 | None:intergenic |
| TGGACAATCATGTCAAGGAT+GGG | 0.572002 | 4_4:+47011739 | None:intergenic |
| GTCGGGTACATTGGACCACC+AGG | 0.572378 | 4_4:+47009441 | None:intergenic |
| TTCTCCTGTAATTTACACCA+TGG | 0.575886 | 4_4:-47011827 | Msa0683950:CDS |
| GCATGACGAACAGCTCTAGT+CGG | 0.576852 | 4_4:+47009423 | None:intergenic |
| ACAAAGTTCCAGCAAGAGGA+TGG | 0.582995 | 4_4:+47008855 | None:intergenic |
| AGCAAGGCATTCGAGCTGGT+TGG | 0.584713 | 4_4:+47008688 | None:intergenic |
| CGATTCATAAGAAGCTTCAA+CGG | 0.588835 | 4_4:-47012906 | Msa0683950:CDS |
| CTGATAGGGTATACCTGGAG+AGG | 0.599368 | 4_4:+47010139 | None:intergenic |
| CCAGCTTCAAAAGCTAAAGG+TGG | 0.599881 | 4_4:-47009665 | Msa0683950:intron |
| CAAGAGGATGGCCAATACCA+TGG | 0.605415 | 4_4:+47008867 | None:intergenic |
| TATCAGAGGGTCAAGAAGCA+AGG | 0.608181 | 4_4:+47008672 | None:intergenic |
| AATCACAAAGTTCCAGCAAG+AGG | 0.620726 | 4_4:+47008851 | None:intergenic |
| AGTCCAAGTAATATAATGTG+AGG | 0.622601 | 4_4:-47008557 | Msa0683950:three_prime_UTR |
| TCTCGGCGGCGAATTAGCGT+CGG | 0.631890 | 4_4:+47012960 | None:intergenic |
| AGAGTTGGACAATCATGTCA+AGG | 0.632220 | 4_4:+47011734 | None:intergenic |
| TTGACATTCAAACAAATACA+AGG | 0.632833 | 4_4:-47010352 | Msa0683950:CDS |
| AGAAAGCAGTTTGGAAAACA+GGG | 0.635503 | 4_4:+47009835 | None:intergenic |
| CCTCTGCGACGAATTTGCCA+AGG | 0.637071 | 4_4:+47012785 | None:intergenic |
| TGAAGAATAGTGTAGAAACG+TGG | 0.657221 | 4_4:+47013265 | None:intergenic |
| TAGCGTCGGACATTTCTGAT+CGG | 0.659020 | 4_4:+47012974 | None:intergenic |
| TAGACGTCCATATGTCTCGA+GGG | 0.659102 | 4_4:-47008747 | Msa0683950:three_prime_UTR |
| CCTTGGCAAATTCGTCGCAG+AGG | 0.660365 | 4_4:-47012785 | Msa0683950:CDS |
| ATAGACGTCCATATGTCTCG+AGG | 0.664889 | 4_4:-47008748 | Msa0683950:exon |
| ACAAAGGTAGAAGAAGGTAG+CGG | 0.670271 | 4_4:-47013169 | Msa0683950:five_prime_UTR |
| GAATCTTATTCAATCGAGTG+TGG | 0.672963 | 4_4:+47010161 | None:intergenic |
| ATACCCATTTGTGAAACAGG+AGG | 0.674414 | 4_4:+47011680 | None:intergenic |
| CTAGGGCAGATGAATACCGA+AGG | 0.681129 | 4_4:+47010859 | None:intergenic |
| ACAAACTAATGAGATGCCGA+GGG | 0.696864 | 4_4:+47008907 | None:intergenic |
| TGGTTGGCAAGAGATGACTC+GGG | 0.709458 | 4_4:+47008704 | None:intergenic |
| AGCACATCATAGAAACACAA+CGG | 0.709751 | 4_4:+47011799 | None:intergenic |
| TGGTTGATGTAGTACCCTGA+AGG | 0.723094 | 4_4:+47009605 | None:intergenic |
| GTAATGCAACATCATCCAAG+AGG | 0.729405 | 4_4:+47010185 | None:intergenic |
| AGATAACCGGAATTTCTCGG+CGG | 0.785455 | 4_4:+47012946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATATATTTTTTAATTT+TGG | - | chr4_4:47010527-47010546 | Msa0683950:intron | 0.0% |
| !!! | ATTATATATTTTTTAATTTT+GGG | - | chr4_4:47010528-47010547 | Msa0683950:intron | 0.0% |
| !! | ACATAAGTTAAATTAAATAT+AGG | + | chr4_4:47011429-47011448 | None:intergenic | 10.0% |
| !!! | GAATGTTATTTTTTGTTTTA+TGG | + | chr4_4:47008499-47008518 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAACACAACAA+AGG | - | chr4_4:47008530-47008549 | Msa0683950:three_prime_UTR | 15.0% |
| !! | TGTATATTTGAATCTAAATA+AGG | - | chr4_4:47009721-47009740 | Msa0683950:intron | 15.0% |
| !! | GTATATTTGAATCTAAATAA+GGG | - | chr4_4:47009722-47009741 | Msa0683950:intron | 15.0% |
| !! | TATATTTGAATCTAAATAAG+GGG | - | chr4_4:47009723-47009742 | Msa0683950:intron | 15.0% |
| !!! | ATAATCTTTATTTTCTTGAT+AGG | - | chr4_4:47009749-47009768 | Msa0683950:intron | 15.0% |
| !!! | TAATCTTTATTTTCTTGATA+GGG | - | chr4_4:47009750-47009769 | Msa0683950:intron | 15.0% |
| !! | TCACTCTATAAATAATTATA+CGG | + | chr4_4:47010419-47010438 | None:intergenic | 15.0% |
| !! | AAATTAAAACGTTACTTAAA+TGG | - | chr4_4:47010924-47010943 | Msa0683950:intron | 15.0% |
| !! | TATATTATTATATCCCATTT+AGG | + | chr4_4:47011079-47011098 | None:intergenic | 15.0% |
| !! | TAAACAATAAAAATTCTAAC+CGG | + | chr4_4:47012346-47012365 | None:intergenic | 15.0% |
| !!! | TCTAGCAATTTATTTTAATT+TGG | + | chr4_4:47012385-47012404 | None:intergenic | 15.0% |
| !! | TTTAAGAAATGAGTTAAAAA+GGG | + | chr4_4:47012617-47012636 | None:intergenic | 15.0% |
| !!! | TTTTTAACTCATTTCTTAAA+GGG | - | chr4_4:47012617-47012636 | Msa0683950:intron | 15.0% |
| !!! | AAATATTGATGTTGTTTTTA+TGG | - | chr4_4:47012764-47012783 | Msa0683950:intron | 15.0% |
| !!! | TTTTTTGTTTTATGGTAACT+TGG | + | chr4_4:47008491-47008510 | None:intergenic | 20.0% |
| !!! | AAGATTCTAGAAAATGATAA+AGG | - | chr4_4:47008669-47008688 | Msa0683950:three_prime_UTR | 20.0% |
| !!! | TAAAATGAGATTTTCATGTA+AGG | - | chr4_4:47009431-47009450 | Msa0683950:CDS | 20.0% |
| !!! | TTTTTATGAACAACATGTAT+TGG | - | chr4_4:47009463-47009482 | Msa0683950:CDS | 20.0% |
| !! | TAGAAATGTCATATTTGTAT+TGG | - | chr4_4:47009575-47009594 | Msa0683950:intron | 20.0% |
| !! | CTATTCAAGATTAGAAAAAT+AGG | - | chr4_4:47009627-47009646 | Msa0683950:CDS | 20.0% |
| !!! | AATCTTTATTTTCTTGATAG+GGG | - | chr4_4:47009751-47009770 | Msa0683950:intron | 20.0% |
| !!! | TTTTATTTAGTGTGATAGTA+TGG | - | chr4_4:47010103-47010122 | Msa0683950:intron | 20.0% |
| !! | ATATAATATGCATTAGTTCA+TGG | + | chr4_4:47010515-47010534 | None:intergenic | 20.0% |
| !! | AAATGAAATATATACCCAAA+AGG | + | chr4_4:47010632-47010651 | None:intergenic | 20.0% |
| !!! | TATAATTTTGCAAAAAGACA+AGG | - | chr4_4:47010948-47010967 | Msa0683950:intron | 20.0% |
| !! | ATGGGATATAATAATATATG+TGG | - | chr4_4:47011081-47011100 | Msa0683950:intron | 20.0% |
| !! | TGGGATATAATAATATATGT+GGG | - | chr4_4:47011082-47011101 | Msa0683950:intron | 20.0% |
| !!! | ATATTGGATTGTTATTGAAA+CGG | + | chr4_4:47011179-47011198 | None:intergenic | 20.0% |
| !!! | TTCATTCTATTTTACAATTC+AGG | - | chr4_4:47011749-47011768 | Msa0683950:CDS | 20.0% |
| !! | ATTATGTTACCTTTAATCAT+TGG | - | chr4_4:47012009-47012028 | Msa0683950:intron | 20.0% |
| !!! | GATCAATTAAAAGATTTTTG+AGG | - | chr4_4:47012479-47012498 | Msa0683950:intron | 20.0% |
| !!! | ATTTTTGAGGTCTTTTTTAT+GGG | - | chr4_4:47012492-47012511 | Msa0683950:intron | 20.0% |
| !!! | CTTTAAGAAATGAGTTAAAA+AGG | + | chr4_4:47012618-47012637 | None:intergenic | 20.0% |
| !!! | CTTTTTAACTCATTTCTTAA+AGG | - | chr4_4:47012616-47012635 | Msa0683950:intron | 20.0% |
| !!! | ATGATTGAATTGATGATGTT+GGG | + | chr4_4:47008409-47008428 | None:intergenic | 25.0% |
| !!! | AATGATTGAATTGATGATGT+TGG | + | chr4_4:47008410-47008429 | None:intergenic | 25.0% |
| ! | ATGAAAAATGAAACACACAA+AGG | + | chr4_4:47008599-47008618 | None:intergenic | 25.0% |
| !! | TTTTATGCGGAGAAAAAAAA+TGG | - | chr4_4:47008840-47008859 | Msa0683950:CDS | 25.0% |
| !!! | AATTTTTGTTTTGATGCTAC+AGG | - | chr4_4:47008907-47008926 | Msa0683950:CDS | 25.0% |
| ! | AAAAGAGTGAATGATTTGAA+TGG | - | chr4_4:47009309-47009328 | Msa0683950:intron | 25.0% |
| !!! | ATGGTTTTTAGTTCATTGTT+TGG | - | chr4_4:47009388-47009407 | Msa0683950:CDS | 25.0% |
| !!! | TATAATTTTGCTATGTCACT+TGG | - | chr4_4:47009545-47009564 | Msa0683950:intron | 25.0% |
| !! | ATTGATAACCATGTTAAATG+AGG | - | chr4_4:47009664-47009683 | Msa0683950:CDS | 25.0% |
| !!! | ATCTTTATTTTCTTGATAGG+GGG | - | chr4_4:47009752-47009771 | Msa0683950:intron | 25.0% |
| ! | TCAGAAAGCAAAAAACAATA+CGG | + | chr4_4:47010076-47010095 | None:intergenic | 25.0% |
| !!! | TATTGTTTTTTGCTTTCTGA+AGG | - | chr4_4:47010076-47010095 | Msa0683950:intron | 25.0% |
| !!! | ATTGTTTTTTGCTTTCTGAA+GGG | - | chr4_4:47010077-47010096 | Msa0683950:intron | 25.0% |
| ! | AATTCAAAACCAGCAATTAA+TGG | + | chr4_4:47010129-47010148 | None:intergenic | 25.0% |
| ! | AATATCATACAGTCAAATTG+AGG | + | chr4_4:47010225-47010244 | None:intergenic | 25.0% |
| ! | AATTTGACTGTATGATATTC+TGG | - | chr4_4:47010226-47010245 | Msa0683950:intron | 25.0% |
| !! | CTAAGGATTAAATCTAAAAC+CGG | + | chr4_4:47010343-47010362 | None:intergenic | 25.0% |
| !!! | TAGAATTTGCTATGAGAATT+TGG | - | chr4_4:47010563-47010582 | Msa0683950:intron | 25.0% |
| !! | TTGTATTTCTTTTGGCAATA+TGG | + | chr4_4:47010719-47010738 | None:intergenic | 25.0% |
| !! | ATAGGAACTTGTATTTCTTT+TGG | + | chr4_4:47010727-47010746 | None:intergenic | 25.0% |
| ! | AAAGTCAATTAGAAACTGAT+AGG | + | chr4_4:47010745-47010764 | None:intergenic | 25.0% |
| !!! | ACGTTTTAATTTATAACAGC+CGG | + | chr4_4:47010916-47010935 | None:intergenic | 25.0% |
| !!! | AACTGTGTTTTTTAATGGAT+AGG | + | chr4_4:47011210-47011229 | None:intergenic | 25.0% |
| ! | ATCCATTAAAAAACACAGTT+TGG | - | chr4_4:47011210-47011229 | Msa0683950:intron | 25.0% |
| ! | AAGACAGTCTTAATAACATT+TGG | + | chr4_4:47011244-47011263 | None:intergenic | 25.0% |
| !! | GGAAATGCAATAATTGTTTT+TGG | - | chr4_4:47011326-47011345 | Msa0683950:intron | 25.0% |
| ! | TTGACATTCAAACAAATACA+AGG | - | chr4_4:47011363-47011382 | Msa0683950:intron | 25.0% |
| ! | TTATGTGTATCATCTGAATA+AGG | - | chr4_4:47011443-47011462 | Msa0683950:intron | 25.0% |
| ! | AAAGTCCTATAAACAATTGT+TGG | + | chr4_4:47011630-47011649 | None:intergenic | 25.0% |
| ! | AAATTGACACCAATGATTAA+AGG | + | chr4_4:47012021-47012040 | None:intergenic | 25.0% |
| ! | GCATTATCTTTCAGAAATTA+AGG | - | chr4_4:47012086-47012105 | Msa0683950:intron | 25.0% |
| ! | TGTTAGCATAAACAAAAGAA+TGG | + | chr4_4:47012191-47012210 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGTTTATGCTAAC+AGG | - | chr4_4:47012190-47012209 | Msa0683950:intron | 25.0% |
| !!! | CTGATAGGAAATGTTTTTTT+GGG | + | chr4_4:47012424-47012443 | None:intergenic | 25.0% |
| !!! | TCTGATAGGAAATGTTTTTT+TGG | + | chr4_4:47012425-47012444 | None:intergenic | 25.0% |
| ! | TGATCTCAATAATGAAAGAT+GGG | + | chr4_4:47012464-47012483 | None:intergenic | 25.0% |
| ! | TTGATCTCAATAATGAAAGA+TGG | + | chr4_4:47012465-47012484 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGGTCTTTTTTA+TGG | - | chr4_4:47012491-47012510 | Msa0683950:intron | 25.0% |
| ! | TTAAATTTCCAACTGATTAC+AGG | - | chr4_4:47012548-47012567 | Msa0683950:intron | 25.0% |
| !!! | GTTTTTTTAAAATGACCAGA+TGG | - | chr4_4:47012582-47012601 | Msa0683950:intron | 25.0% |
| ! | AAATGAGTTAAAAAGGGAAA+AGG | + | chr4_4:47012611-47012630 | None:intergenic | 25.0% |
| !!! | TTGTTTTTATGGTATCATAC+AGG | - | chr4_4:47012775-47012794 | Msa0683950:intron | 25.0% |
| ! | GGAAAAAAAGAAATATCAGA+GGG | + | chr4_4:47013059-47013078 | None:intergenic | 25.0% |
| ! | TGGAAAAAAAGAAATATCAG+AGG | + | chr4_4:47013060-47013079 | None:intergenic | 25.0% |
| !! | TGTATATTTTGTTCACTGTA+TGG | - | chr4_4:47013118-47013137 | Msa0683950:five_prime_UTR | 25.0% |
| ! | TTTCCTCACATTATATTACT+TGG | + | chr4_4:47013164-47013183 | None:intergenic | 25.0% |
| CGTGGAAAACAAAAAAAAGA+TGG | + | chr4_4:47008435-47008454 | None:intergenic | 30.0% | |
| !! | GAAAATGATAAAGGTGTTTC+TGG | - | chr4_4:47008678-47008697 | Msa0683950:three_prime_UTR | 30.0% |
| TCAAAAGCTACAATTACCTT+TGG | + | chr4_4:47009011-47009030 | None:intergenic | 30.0% | |
| TGTAATGTAATTGACTGACA+CGG | - | chr4_4:47009125-47009144 | Msa0683950:intron | 30.0% | |
| GTCTTGTATTGCTAAATGTA+AGG | - | chr4_4:47009493-47009512 | Msa0683950:CDS | 30.0% | |
| TGTATTCTCCTCATTTAACA+TGG | + | chr4_4:47009675-47009694 | None:intergenic | 30.0% | |
| ATGAGGAGAATACATAACAA+TGG | - | chr4_4:47009681-47009700 | Msa0683950:intron | 30.0% | |
| AAATAAAGAAAACCTCCACT+TGG | + | chr4_4:47009827-47009846 | None:intergenic | 30.0% | |
| !!! | CGGTTTTAGATTTAATCCTT+AGG | - | chr4_4:47010341-47010360 | Msa0683950:CDS | 30.0% |
| !! | GTTATGTTTTTACAGAGTAC+TGG | - | chr4_4:47010585-47010604 | Msa0683950:intron | 30.0% |
| !! | ATAGGCTTTCATTTGTTGTA+AGG | - | chr4_4:47010684-47010703 | Msa0683950:intron | 30.0% |
| TGTAAGTGTATTGAGAAGTT+AGG | + | chr4_4:47010800-47010819 | None:intergenic | 30.0% | |
| TTCATACCAGAAAACATTTG+TGG | + | chr4_4:47010891-47010910 | None:intergenic | 30.0% | |
| !! | ATGTTTTCTGGTATGAATAC+CGG | - | chr4_4:47010894-47010913 | Msa0683950:CDS | 30.0% |
| ! | AATTTTGCAAAAAGACAAGG+TGG | - | chr4_4:47010951-47010970 | Msa0683950:intron | 30.0% |
| TATTATATCCCATTTAGGAG+TGG | + | chr4_4:47011074-47011093 | None:intergenic | 30.0% | |
| TGGATAGGATAAAGTCATAT+TGG | + | chr4_4:47011195-47011214 | None:intergenic | 30.0% | |
| !!! | TGCCAAACTGTGTTTTTTAA+TGG | + | chr4_4:47011215-47011234 | None:intergenic | 30.0% |
| TGTTATTAAGACTGTCTTCA+TGG | - | chr4_4:47011246-47011265 | Msa0683950:intron | 30.0% | |
| GTTATTAAGACTGTCTTCAT+GGG | - | chr4_4:47011247-47011266 | Msa0683950:intron | 30.0% | |
| CATGTTTGGAAAATCAATCA+GGG | - | chr4_4:47011305-47011324 | Msa0683950:intron | 30.0% | |
| TTCTTACACGAAATATAGAC+TGG | + | chr4_4:47011394-47011413 | None:intergenic | 30.0% | |
| ATTTCGTGTAAGAATTCTAG+TGG | - | chr4_4:47011400-47011419 | Msa0683950:intron | 30.0% | |
| TTTCGTGTAAGAATTCTAGT+GGG | - | chr4_4:47011401-47011420 | Msa0683950:intron | 30.0% | |
| CAAAGAACATGCAAAAGAAA+TGG | + | chr4_4:47011490-47011509 | None:intergenic | 30.0% | |
| ! | GAGTTGGGATTTTATTAATG+CGG | - | chr4_4:47011604-47011623 | Msa0683950:intron | 30.0% |
| !! | CTACTTTTCATTGAACTATC+AGG | - | chr4_4:47011694-47011713 | Msa0683950:CDS | 30.0% |
| ACCATTGCATCATTATTCAT+AGG | + | chr4_4:47011798-47011817 | None:intergenic | 30.0% | |
| TCATTCACAAATATATCTGC+AGG | + | chr4_4:47011917-47011936 | None:intergenic | 30.0% | |
| TTTGTTTATGCTAACAGGTA+TGG | - | chr4_4:47012195-47012214 | Msa0683950:intron | 30.0% | |
| !! | TTGTATAGTTTTACTTCTCC+TGG | - | chr4_4:47012256-47012275 | Msa0683950:intron | 30.0% |
| CAATATTTCCTGTAATCAGT+TGG | + | chr4_4:47012559-47012578 | None:intergenic | 30.0% | |
| GCAAACTAATATGAACTTTG+TGG | + | chr4_4:47012659-47012678 | None:intergenic | 30.0% | |
| ! | TTTTATGGTATCATACAGGT+TGG | - | chr4_4:47012779-47012798 | Msa0683950:intron | 30.0% |
| TTTATGGTATCATACAGGTT+GGG | - | chr4_4:47012780-47012799 | Msa0683950:intron | 30.0% | |
| !! | ATCTCATTAGTTTGTTCTTC+AGG | - | chr4_4:47012816-47012835 | Msa0683950:intron | 30.0% |
| ! | ACAATCTTTTACTCCTTACT+CGG | - | chr4_4:47012899-47012918 | Msa0683950:intron | 30.0% |
| ! | GATATTTTCTACATGGGAAA+AGG | - | chr4_4:47012925-47012944 | Msa0683950:CDS | 30.0% |
| !!! | TGTTTTTTACACATCACATC+AGG | + | chr4_4:47013083-47013102 | None:intergenic | 30.0% |
| AGTCCAAGTAATATAATGTG+AGG | - | chr4_4:47013158-47013177 | Msa0683950:five_prime_UTR | 30.0% | |
| !!! | CTCGTTTAGTTGTTTTTAAG+TGG | + | chr4_4:47013195-47013214 | None:intergenic | 30.0% |
| CACTTAAAAACAACTAAACG+AGG | - | chr4_4:47013193-47013212 | Msa0683950:five_prime_UTR | 30.0% | |
| TGAAGAATAGTGTAGAAACG+TGG | + | chr4_4:47008453-47008472 | None:intergenic | 35.0% | |
| ! | GTTTTATGGTAACTTGGTCT+TGG | + | chr4_4:47008485-47008504 | None:intergenic | 35.0% |
| AACACAACAAAGGTAGAAGA+AGG | - | chr4_4:47008540-47008559 | Msa0683950:three_prime_UTR | 35.0% | |
| !! | TGATAAAGGTGTTTCTGGAT+CGG | - | chr4_4:47008683-47008702 | Msa0683950:three_prime_UTR | 35.0% |
| GATCGGGATTAGAATTTCTA+GGG | - | chr4_4:47008700-47008719 | Msa0683950:three_prime_UTR | 35.0% | |
| CGATTCATAAGAAGCTTCAA+CGG | - | chr4_4:47008809-47008828 | Msa0683950:CDS | 35.0% | |
| GATTCATAAGAAGCTTCAAC+GGG | - | chr4_4:47008810-47008829 | Msa0683950:CDS | 35.0% | |
| !!! | AACGGGTGAGTTTTTTTATG+CGG | - | chr4_4:47008827-47008846 | Msa0683950:CDS | 35.0% |
| !!! | TTTTGCTGATGTAGCTTTAG+AGG | - | chr4_4:47008973-47008992 | Msa0683950:intron | 35.0% |
| TGATTCAATAGCTATGAAGC+AGG | - | chr4_4:47009053-47009072 | Msa0683950:intron | 35.0% | |
| GATTCAATAGCTATGAAGCA+GGG | - | chr4_4:47009054-47009073 | Msa0683950:intron | 35.0% | |
| ! | TTATCTTGTTTGCATGCTCA+TGG | - | chr4_4:47009369-47009388 | Msa0683950:intron | 35.0% |
| !! | TTTATTTTCTTGATAGGGGG+TGG | - | chr4_4:47009755-47009774 | Msa0683950:intron | 35.0% |
| GCAAAACAAGAATTACCAAG+TGG | - | chr4_4:47009809-47009828 | Msa0683950:CDS | 35.0% | |
| AAACAAGAATTACCAAGTGG+AGG | - | chr4_4:47009812-47009831 | Msa0683950:CDS | 35.0% | |
| TTCTCCTGTAATTTACACCA+TGG | - | chr4_4:47009888-47009907 | Msa0683950:intron | 35.0% | |
| AGCACATCATAGAAACACAA+CGG | + | chr4_4:47009919-47009938 | None:intergenic | 35.0% | |
| TACATACCCATTTGTGAAAC+AGG | + | chr4_4:47010041-47010060 | None:intergenic | 35.0% | |
| ATAGTATGGCCATTAATTGC+TGG | - | chr4_4:47010117-47010136 | Msa0683950:intron | 35.0% | |
| TGAACCTGGTTATGATCATT+TGG | - | chr4_4:47010267-47010286 | Msa0683950:intron | 35.0% | |
| TACTCCAAATGATCATAACC+AGG | + | chr4_4:47010274-47010293 | None:intergenic | 35.0% | |
| ACAAACAGCTAAGTGAAAAC+GGG | + | chr4_4:47010307-47010326 | None:intergenic | 35.0% | |
| GACAAACAGCTAAGTGAAAA+CGG | + | chr4_4:47010308-47010327 | None:intergenic | 35.0% | |
| GTTTGTCAAATGCTTGAAAC+CGG | - | chr4_4:47010321-47010340 | Msa0683950:intron | 35.0% | |
| !!! | TTATTCCCGTTCTGTTTTTG+AGG | - | chr4_4:47010655-47010674 | Msa0683950:intron | 35.0% |
| !!! | TATTCCCGTTCTGTTTTTGA+GGG | - | chr4_4:47010656-47010675 | Msa0683950:intron | 35.0% |
| AAACCTCTACTATGATAGAG+TGG | - | chr4_4:47011273-47011292 | Msa0683950:intron | 35.0% | |
| AACCTCTACTATGATAGAGT+GGG | - | chr4_4:47011274-47011293 | Msa0683950:intron | 35.0% | |
| !! | CCTGATTGATTTTCCAAACA+TGG | + | chr4_4:47011307-47011326 | None:intergenic | 35.0% |
| CCATGTTTGGAAAATCAATC+AGG | - | chr4_4:47011304-47011323 | Msa0683950:intron | 35.0% | |
| !!! | TTGTTTTTGGTGACATGTAC+AGG | - | chr4_4:47011339-47011358 | Msa0683950:intron | 35.0% |
| GAATCTTATTCAATCGAGTG+TGG | + | chr4_4:47011557-47011576 | None:intergenic | 35.0% | |
| ATTGAATAAGATTCCTCTCC+AGG | - | chr4_4:47011563-47011582 | Msa0683950:intron | 35.0% | |
| TAAAACTGATAGGGTATACC+TGG | + | chr4_4:47011584-47011603 | None:intergenic | 35.0% | |
| !!! | TACCCTATCAGTTTTAGAGT+TGG | - | chr4_4:47011588-47011607 | Msa0683950:intron | 35.0% |
| !!! | ACCCTATCAGTTTTAGAGTT+GGG | - | chr4_4:47011589-47011608 | Msa0683950:intron | 35.0% |
| !! | TCCCAACTCTAAAACTGATA+GGG | + | chr4_4:47011593-47011612 | None:intergenic | 35.0% |
| !! | ATCCCAACTCTAAAACTGAT+AGG | + | chr4_4:47011594-47011613 | None:intergenic | 35.0% |
| ! | ATATGTATCTTTTGCTCTCG+AGG | - | chr4_4:47011726-47011745 | Msa0683950:CDS | 35.0% |
| TTACAATTCAGGTAGCCATT+CGG | - | chr4_4:47011760-47011779 | Msa0683950:CDS | 35.0% | |
| GCCTATGAATAATGATGCAA+TGG | - | chr4_4:47011794-47011813 | Msa0683950:CDS | 35.0% | |
| AGAAAGCAGTTTGGAAAACA+GGG | + | chr4_4:47011883-47011902 | None:intergenic | 35.0% | |
| AAGAAAGCAGTTTGGAAAAC+AGG | + | chr4_4:47011884-47011903 | None:intergenic | 35.0% | |
| TTCCAAACTGCTTTCTTAGT+TGG | - | chr4_4:47011887-47011906 | Msa0683950:intron | 35.0% | |
| TGTGAATGAACTTACTGATC+AGG | - | chr4_4:47011928-47011947 | Msa0683950:intron | 35.0% | |
| AATTTCTTCATATGAGCCAG+AGG | + | chr4_4:47011992-47012011 | None:intergenic | 35.0% | |
| TTACCAGCTTCAAAAGCTAA+AGG | - | chr4_4:47012047-47012066 | Msa0683950:intron | 35.0% | |
| TTCAGAAATTAAGGTCCTTC+AGG | - | chr4_4:47012095-47012114 | Msa0683950:intron | 35.0% | |
| TCAGAAATTAAGGTCCTTCA+GGG | - | chr4_4:47012096-47012115 | Msa0683950:intron | 35.0% | |
| AACCATTCAGGTGCAATAAT+TGG | - | chr4_4:47012128-47012147 | Msa0683950:intron | 35.0% | |
| !! | TATAGTTTTACTTCTCCTGG+TGG | - | chr4_4:47012259-47012278 | Msa0683950:intron | 35.0% |
| !! | AGCACTGGATTTTCTTTTTC+CGG | - | chr4_4:47012324-47012343 | Msa0683950:intron | 35.0% |
| !!! | TAGGAAATGTTTTTTTGGGC+TGG | + | chr4_4:47012420-47012439 | None:intergenic | 35.0% |
| CTGGAAAATTGTACTCTGAT+AGG | + | chr4_4:47012439-47012458 | None:intergenic | 35.0% | |
| ! | CTATCAGAGTACAATTTTCC+AGG | - | chr4_4:47012437-47012456 | Msa0683950:intron | 35.0% |
| !!! | TTTGAGGTCTTTTTTATGGG+TGG | - | chr4_4:47012495-47012514 | Msa0683950:intron | 35.0% |
| TTATGGGTGGTATTATATGC+TGG | - | chr4_4:47012508-47012527 | Msa0683950:intron | 35.0% | |
| AACACCGTAATTCATAAGCA+CGG | - | chr4_4:47012706-47012725 | Msa0683950:intron | 35.0% | |
| AAGACCGTGCTTATGAATTA+CGG | + | chr4_4:47012713-47012732 | None:intergenic | 35.0% | |
| TTATTTAGCAGACAAGTACC+TGG | + | chr4_4:47012746-47012765 | None:intergenic | 35.0% | |
| ACTTTGTGATTTCCTGCATT+CGG | - | chr4_4:47012876-47012895 | Msa0683950:intron | 35.0% | |
| ! | CAATCTTTTACTCCTTACTC+GGG | - | chr4_4:47012900-47012919 | Msa0683950:intron | 35.0% |
| AGAAAATATCAACCCGAGTA+AGG | + | chr4_4:47012915-47012934 | None:intergenic | 35.0% | |
| !!! | TCGGGTTGATATTTTCTACA+TGG | - | chr4_4:47012918-47012937 | Msa0683950:CDS | 35.0% |
| !!! | CGGGTTGATATTTTCTACAT+GGG | - | chr4_4:47012919-47012938 | Msa0683950:CDS | 35.0% |
| !!! | CGTCTATTGTGTTTTTGGTT+TGG | + | chr4_4:47012954-47012973 | None:intergenic | 35.0% |
| ! | ATGGACGTCTATTGTGTTTT+TGG | + | chr4_4:47012959-47012978 | None:intergenic | 35.0% |
| ! | TTTTTACACATCACATCAGG+TGG | + | chr4_4:47013080-47013099 | None:intergenic | 35.0% |
| TTCACTGTATGGCTTAGAAT+AGG | - | chr4_4:47013129-47013148 | Msa0683950:five_prime_UTR | 35.0% | |
| ACAAAGGTAGAAGAAGGTAG+CGG | - | chr4_4:47008546-47008565 | Msa0683950:three_prime_UTR | 40.0% | |
| !! | GATAAAGGTGTTTCTGGATC+GGG | - | chr4_4:47008684-47008703 | Msa0683950:three_prime_UTR | 40.0% |
| GGATCGGGATTAGAATTTCT+AGG | - | chr4_4:47008699-47008718 | Msa0683950:three_prime_UTR | 40.0% | |
| TCGAGATAACCGGAATTTCT+CGG | + | chr4_4:47008775-47008794 | None:intergenic | 40.0% | |
| ATAGCTATGAAGCAGGGATA+CGG | - | chr4_4:47009060-47009079 | Msa0683950:intron | 40.0% | |
| TGTGATGCAATTGCATGTGT+CGG | - | chr4_4:47009208-47009227 | Msa0683950:intron | 40.0% | |
| GCAATGACTCTTCAAATCGA+AGG | + | chr4_4:47009246-47009265 | None:intergenic | 40.0% | |
| ! | AAGCATGATAGTGTTGTGCA+TGG | - | chr4_4:47009345-47009364 | Msa0683950:intron | 40.0% |
| CCATCCATGGTGTAAATTAC+AGG | + | chr4_4:47009895-47009914 | None:intergenic | 40.0% | |
| CCTGTAATTTACACCATGGA+TGG | - | chr4_4:47009892-47009911 | Msa0683950:intron | 40.0% | |
| TTTGTACAAGTGCCTGAAAG+TGG | - | chr4_4:47009949-47009968 | Msa0683950:intron | 40.0% | |
| TGGACAATCATGTCAAGGAT+GGG | + | chr4_4:47009979-47009998 | None:intergenic | 40.0% | |
| TTGGACAATCATGTCAAGGA+TGG | + | chr4_4:47009980-47009999 | None:intergenic | 40.0% | |
| AGAGTTGGACAATCATGTCA+AGG | + | chr4_4:47009984-47010003 | None:intergenic | 40.0% | |
| TTGACATGATTGTCCAACTC+TGG | - | chr4_4:47009983-47010002 | Msa0683950:CDS | 40.0% | |
| TTAGCCTCCTGTTTCACAAA+TGG | - | chr4_4:47010031-47010050 | Msa0683950:intron | 40.0% | |
| TAGCCTCCTGTTTCACAAAT+GGG | - | chr4_4:47010032-47010051 | Msa0683950:intron | 40.0% | |
| ATACCCATTTGTGAAACAGG+AGG | + | chr4_4:47010038-47010057 | None:intergenic | 40.0% | |
| ! | AAGAGTCACTCTTGATGACA+TGG | - | chr4_4:47010175-47010194 | Msa0683950:CDS | 40.0% |
| TAGTATGCACTGAGTTCCTA+AGG | + | chr4_4:47010360-47010379 | None:intergenic | 40.0% | |
| !! | TACAGAGTACTGGTTTGAGA+TGG | - | chr4_4:47010595-47010614 | Msa0683950:intron | 40.0% |
| !! | ACAGAGTACTGGTTTGAGAT+GGG | - | chr4_4:47010596-47010615 | Msa0683950:intron | 40.0% |
| !!! | ATGGGATGGTTTTGTCCTTT+TGG | - | chr4_4:47010614-47010633 | Msa0683950:intron | 40.0% |
| !!! | TGGGATGGTTTTGTCCTTTT+GGG | - | chr4_4:47010615-47010634 | Msa0683950:intron | 40.0% |
| !!! | ATTCCCGTTCTGTTTTTGAG+GGG | - | chr4_4:47010657-47010676 | Msa0683950:intron | 40.0% |
| TAACCCCTCAAAAACAGAAC+GGG | + | chr4_4:47010663-47010682 | None:intergenic | 40.0% | |
| GTAACCCCTCAAAAACAGAA+CGG | + | chr4_4:47010664-47010683 | None:intergenic | 40.0% | |
| !!! | CTGTTTTTGAGGGGTTACAT+AGG | - | chr4_4:47010666-47010685 | Msa0683950:intron | 40.0% |
| !! | ATAATCCAGAAGTGCTCCTT+CGG | - | chr4_4:47010840-47010859 | Msa0683950:CDS | 40.0% |
| TATTCATCTGCCCTAGTTCA+AGG | - | chr4_4:47010863-47010882 | Msa0683950:CDS | 40.0% | |
| ATTTGTGGCACCTTGAACTA+GGG | + | chr4_4:47010876-47010895 | None:intergenic | 40.0% | |
| !! | AAGGTGCCACAAATGTTTTC+TGG | - | chr4_4:47010882-47010901 | Msa0683950:CDS | 40.0% |
| ! | GCAAAAAGACAAGGTGGATT+TGG | - | chr4_4:47010957-47010976 | Msa0683950:intron | 40.0% |
| TATCCCATTTAGGAGTGGAT+TGG | + | chr4_4:47011069-47011088 | None:intergenic | 40.0% | |
| !! | CCAAGAGGTACTGAATTTGA+GGG | + | chr4_4:47011518-47011537 | None:intergenic | 40.0% |
| !! | TCCAAGAGGTACTGAATTTG+AGG | + | chr4_4:47011519-47011538 | None:intergenic | 40.0% |
| GTAATGCAACATCATCCAAG+AGG | + | chr4_4:47011533-47011552 | None:intergenic | 40.0% | |
| TGCGGCCAACAATTGTTTAT+AGG | - | chr4_4:47011622-47011641 | Msa0683950:intron | 40.0% | |
| !! | TCTACTTTTGTCGCAAGCAA+TGG | - | chr4_4:47011657-47011676 | Msa0683950:intron | 40.0% |
| AATATTATCCTCTCTGCAGC+TGG | - | chr4_4:47011830-47011849 | Msa0683950:CDS | 40.0% | |
| CAAACTGCTTTCTTAGTTGG+CGG | - | chr4_4:47011890-47011909 | Msa0683950:intron | 40.0% | |
| TTCATATGAGCCAGAGGATA+CGG | + | chr4_4:47011986-47012005 | None:intergenic | 40.0% | |
| GTCCAATTATTGCACCTGAA+TGG | + | chr4_4:47012133-47012152 | None:intergenic | 40.0% | |
| TCAGGTGCAATAATTGGACA+TGG | - | chr4_4:47012134-47012153 | Msa0683950:intron | 40.0% | |
| CAATAATGAAAGATGGGACC+TGG | + | chr4_4:47012458-47012477 | None:intergenic | 40.0% | |
| AAAGGGAAAAGGTAACCATC+TGG | + | chr4_4:47012600-47012619 | None:intergenic | 40.0% | |
| AGTTTGCAACATAGCACTAG+TGG | - | chr4_4:47012672-47012691 | Msa0683950:intron | 40.0% | |
| ACAAACTAATGAGATGCCGA+GGG | + | chr4_4:47012811-47012830 | None:intergenic | 40.0% | |
| AACAAACTAATGAGATGCCG+AGG | + | chr4_4:47012812-47012831 | None:intergenic | 40.0% | |
| !! | TCTTCAGGTTGCTTTATCCA+TGG | - | chr4_4:47012831-47012850 | Msa0683950:intron | 40.0% |
| ! | GGTTGCTTTATCCATGGTAT+TGG | - | chr4_4:47012837-47012856 | Msa0683950:intron | 40.0% |
| GTAAAAGATTGTCCGAATGC+AGG | + | chr4_4:47012891-47012910 | None:intergenic | 40.0% | |
| CATAATACCCTCGAGACATA+TGG | + | chr4_4:47012978-47012997 | None:intergenic | 40.0% | |
| !! | TGGTAACTTGGTCTTGGTGA+AGG | + | chr4_4:47008479-47008498 | None:intergenic | 45.0% |
| ! | TAGCGTCGGACATTTCTGAT+CGG | + | chr4_4:47008744-47008763 | None:intergenic | 45.0% |
| AGATAACCGGAATTTCTCGG+CGG | + | chr4_4:47008772-47008791 | None:intergenic | 45.0% | |
| !! | AGAGAGAGCATCGAGATAAC+CGG | + | chr4_4:47008785-47008804 | None:intergenic | 45.0% |
| !!! | TGTTTTGATGCTACAGGCCT+TGG | - | chr4_4:47008913-47008932 | Msa0683950:CDS | 45.0% |
| ATAGGGGGTGGATGAATATG+TGG | - | chr4_4:47009767-47009786 | Msa0683950:intron | 45.0% | |
| !! | AGGATGGGTTTTCCACTTTC+AGG | + | chr4_4:47009964-47009983 | None:intergenic | 45.0% |
| ! | CAAATGACTGACTCCAGAGT+TGG | + | chr4_4:47009999-47010018 | None:intergenic | 45.0% |
| !! | AGTACTGGTTTGAGATGGGA+TGG | - | chr4_4:47010600-47010619 | Msa0683950:intron | 45.0% |
| CATTTGTGGCACCTTGAACT+AGG | + | chr4_4:47010877-47010896 | None:intergenic | 45.0% | |
| ! | CAAGGTGGATTTGGATTTGC+TGG | - | chr4_4:47010966-47010985 | Msa0683950:intron | 45.0% |
| GCTCCAATCCACTCCTAAAT+GGG | - | chr4_4:47011063-47011082 | Msa0683950:intron | 45.0% | |
| TGCCCACTCTATCATAGTAG+AGG | + | chr4_4:47011279-47011298 | None:intergenic | 45.0% | |
| CCCTCAAATTCAGTACCTCT+TGG | - | chr4_4:47011515-47011534 | Msa0683950:intron | 45.0% | |
| AGGCTAATGACATCTCCGAA+TGG | + | chr4_4:47011778-47011797 | None:intergenic | 45.0% | |
| CGCCAACTAAGAAAGCAGTT+TGG | + | chr4_4:47011892-47011911 | None:intergenic | 45.0% | |
| ACGGCTCTCATTTGTGAACA+AGG | + | chr4_4:47011967-47011986 | None:intergenic | 45.0% | |
| !!! | CCACCTTTAGCTTTTGAAGC+TGG | + | chr4_4:47012053-47012072 | None:intergenic | 45.0% |
| CCAGCTTCAAAAGCTAAAGG+TGG | - | chr4_4:47012050-47012069 | Msa0683950:intron | 45.0% | |
| GAAAGATAATGCAGCAGCAC+AGG | + | chr4_4:47012078-47012097 | None:intergenic | 45.0% | |
| ! | TGGTTGATGTAGTACCCTGA+AGG | + | chr4_4:47012113-47012132 | None:intergenic | 45.0% |
| GGGTACTACATCAACCATTC+AGG | - | chr4_4:47012116-47012135 | Msa0683950:intron | 45.0% | |
| AAGAATGGCTTAGCTGAGTC+AGG | + | chr4_4:47012176-47012195 | None:intergenic | 45.0% | |
| AAGAAAATCCAGTGCTTCCC+AGG | + | chr4_4:47012320-47012339 | None:intergenic | 45.0% | |
| ATAGACGTCCATATGTCTCG+AGG | - | chr4_4:47012967-47012986 | Msa0683950:CDS | 45.0% | |
| TAGACGTCCATATGTCTCGA+GGG | - | chr4_4:47012968-47012987 | Msa0683950:exon | 45.0% | |
| TATCAGAGGGTCAAGAAGCA+AGG | + | chr4_4:47013046-47013065 | None:intergenic | 45.0% | |
| !! | TTTATTTAAATATTGATATT+TGG | - | chr4_4:47008646-47008665 | Msa0683950:three_prime_UTR | 5.0% |
| AATTCGCCGCCGAGAAATTC+CGG | - | chr4_4:47008763-47008782 | Msa0683950:exon | 50.0% | |
| !! | GCAGAGGCGTAATTTGTTGC+AGG | - | chr4_4:47008946-47008965 | Msa0683950:intron | 50.0% |
| !! | GAGGTTGATGATCGAGCCAA+AGG | - | chr4_4:47008992-47009011 | Msa0683950:intron | 50.0% |
| CTGACACTGGCATATCGTAC+TGG | - | chr4_4:47009156-47009175 | Msa0683950:intron | 50.0% | |
| CAATTGCATGTGTCGGACAG+CGG | - | chr4_4:47009215-47009234 | Msa0683950:intron | 50.0% | |
| GAAACACAACGGACCATCCA+TGG | + | chr4_4:47009908-47009927 | None:intergenic | 50.0% | |
| ATGCTCAGTGTCTCTGAACC+TGG | - | chr4_4:47010253-47010272 | Msa0683950:intron | 50.0% | |
| !! | GAATACCGAAGGAGCACTTC+TGG | + | chr4_4:47010848-47010867 | None:intergenic | 50.0% |
| CTAGGGCAGATGAATACCGA+AGG | + | chr4_4:47010859-47010878 | None:intergenic | 50.0% | |
| CGCTCCAATCCACTCCTAAA+TGG | - | chr4_4:47011062-47011081 | Msa0683950:intron | 50.0% | |
| ! | AGTGGGCATTGTGCCATGTT+TGG | - | chr4_4:47011291-47011310 | Msa0683950:intron | 50.0% |
| CTGATAGGGTATACCTGGAG+AGG | + | chr4_4:47011579-47011598 | None:intergenic | 50.0% | |
| CAAATGAGAGCCGTATCCTC+TGG | - | chr4_4:47011973-47011992 | Msa0683950:intron | 50.0% | |
| ! | ACAGCTCTAGTCGGGTACAT+TGG | + | chr4_4:47012286-47012305 | None:intergenic | 50.0% |
| ! | CATGACGAACAGCTCTAGTC+GGG | + | chr4_4:47012294-47012313 | None:intergenic | 50.0% |
| ! | GCATGACGAACAGCTCTAGT+CGG | + | chr4_4:47012295-47012314 | None:intergenic | 50.0% |
| TGGTTGGCAAGAGATGACTC+GGG | + | chr4_4:47013014-47013033 | None:intergenic | 50.0% | |
| CTGGTTGGCAAGAGATGACT+CGG | + | chr4_4:47013015-47013034 | None:intergenic | 50.0% | |
| ! | AAGAAGCAAGGCATTCGAGC+TGG | + | chr4_4:47013034-47013053 | None:intergenic | 50.0% |
| CCTCTGCGACGAATTTGCCA+AGG | + | chr4_4:47008933-47008952 | None:intergenic | 55.0% | |
| CCTTGGCAAATTCGTCGCAG+AGG | - | chr4_4:47008930-47008949 | Msa0683950:intron | 55.0% | |
| ! | CGACTTTTCCAGCTGCAGAG+AGG | + | chr4_4:47011841-47011860 | None:intergenic | 55.0% |
| AGCTGTTCGTCATGCTGCCT+GGG | - | chr4_4:47012300-47012319 | Msa0683950:intron | 55.0% | |
| ACGGTCTTCATGCAGACACC+AGG | - | chr4_4:47012725-47012744 | Msa0683950:intron | 55.0% | |
| ! | TACAGGTTGGGCAGTACCCT+CGG | - | chr4_4:47012792-47012811 | Msa0683950:intron | 55.0% |
| ! | AGCAAGGCATTCGAGCTGGT+TGG | + | chr4_4:47013030-47013049 | None:intergenic | 55.0% |
| TCTCGGCGGCGAATTAGCGT+CGG | + | chr4_4:47008758-47008777 | None:intergenic | 60.0% | |
| CACGGACACGACACTGACAC+TGG | - | chr4_4:47009143-47009162 | Msa0683950:intron | 60.0% | |
| GTCGGGTACATTGGACCACC+AGG | + | chr4_4:47012277-47012296 | None:intergenic | 60.0% | |
| GAGCTGTTCGTCATGCTGCC+TGG | - | chr4_4:47012299-47012318 | Msa0683950:intron | 60.0% | |
| ! | TCATGCTGCCTGGGAAGCAC+TGG | - | chr4_4:47012309-47012328 | Msa0683950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47008367 | 47013370 | 47008367 | ID=Msa0683950;Name=Msa0683950 |
| chr4_4 | mRNA | 47008367 | 47013370 | 47008367 | ID=Msa0683950-mRNA-1;Parent=Msa0683950;Name=Msa0683950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=384|0.8|0.81|1|0.9|0.90|11|400|343 |
| chr4_4 | exon | 47008367 | 47008940 | 47008367 | ID=Msa0683950-mRNA-1:exon:11601;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47009377 | 47009525 | 47009377 | ID=Msa0683950-mRNA-1:exon:11600;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47009620 | 47009683 | 47009620 | ID=Msa0683950-mRNA-1:exon:11599;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47009788 | 47009888 | 47009788 | ID=Msa0683950-mRNA-1:exon:11598;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47009967 | 47010021 | 47009967 | ID=Msa0683950-mRNA-1:exon:11597;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47010153 | 47010209 | 47010153 | ID=Msa0683950-mRNA-1:exon:11596;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47010331 | 47010376 | 47010331 | ID=Msa0683950-mRNA-1:exon:11595;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47010834 | 47010916 | 47010834 | ID=Msa0683950-mRNA-1:exon:11594;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47011684 | 47011880 | 47011684 | ID=Msa0683950-mRNA-1:exon:11593;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47012784 | 47012808 | 47012784 | ID=Msa0683950-mRNA-1:exon:11592;Parent=Msa0683950-mRNA-1 |
| chr4_4 | exon | 47012906 | 47013370 | 47012906 | ID=Msa0683950-mRNA-1:exon:11591;Parent=Msa0683950-mRNA-1 |
| chr4_4 | five_prime_UTR | 47012987 | 47013370 | 47012987 | ID=Msa0683950-mRNA-1:five_prime_utr;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47012906 | 47012986 | 47012906 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47012784 | 47012808 | 47012784 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47011684 | 47011880 | 47011684 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47010834 | 47010916 | 47010834 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47010331 | 47010376 | 47010331 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47010153 | 47010209 | 47010153 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47009967 | 47010021 | 47009967 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47009788 | 47009888 | 47009788 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47009620 | 47009683 | 47009620 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47009377 | 47009525 | 47009377 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | CDS | 47008767 | 47008940 | 47008767 | ID=Msa0683950-mRNA-1:cds;Parent=Msa0683950-mRNA-1 |
| chr4_4 | three_prime_UTR | 47008367 | 47008766 | 47008367 | ID=Msa0683950-mRNA-1:three_prime_utr;Parent=Msa0683950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
