Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644130 | XP_003606657.1 | 84.399 | 391 | 8 | 2 | 1 | 371 | 1 | 358 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603110 | Msa0644130 | 0.895207 | 1.193351e-75 | -8.615850e-47 |
| Msa0644130 | Msa0658570 | -0.809619 | 1.729985e-50 | -8.615850e-47 |
| Msa0644130 | Msa0683950 | 0.931565 | 3.130104e-94 | -8.615850e-47 |
| Msa0644130 | Msa1018990 | 0.824614 | 7.335844e-54 | -8.615850e-47 |
| Msa0644130 | Msa1376890 | -0.808284 | 3.340030e-50 | -8.615850e-47 |
| Msa0433410 | Msa0644130 | 0.802692 | 4.972217e-49 | -8.615850e-47 |
| Msa0548090 | Msa0644130 | 0.928877 | 1.548587e-92 | -8.615850e-47 |
| Msa0567020 | Msa0644130 | -0.802260 | 6.103555e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644130 | MtrunA17_Chr4g0031101 | 84.399 | 391 | 8 | 2 | 1 | 371 | 1 | 358 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644130 | AT5G59960.1 | 65.147 | 373 | 77 | 2 | 12 | 364 | 16 | 355 | 3.75e-174 | 489 |
| Msa0644130 | AT5G59960.3 | 71.831 | 284 | 47 | 1 | 81 | 364 | 1 | 251 | 8.23e-147 | 416 |
| Msa0644130 | AT5G59960.2 | 63.077 | 325 | 67 | 2 | 12 | 316 | 16 | 307 | 1.31e-141 | 404 |
Find 100 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATGATAAAGGTGTTTC+TGG | 0.205030 | 4_3:-47673399 | Msa0644130:five_prime_UTR |
| TGATAATGTGTTGTTTAAAA+TGG | 0.218863 | 4_3:+47673712 | None:intergenic |
| GCATTATCTTTCAGAAATTA+AGG | 0.220788 | 4_3:-47669721 | Msa0644130:CDS |
| TATTTAAATATTGATCAATT+TGG | 0.231023 | 4_3:-47673431 | Msa0644130:five_prime_UTR |
| TTCAGAAATTAAGGTCCTTC+AGG | 0.292111 | 4_3:-47669712 | Msa0644130:CDS |
| GAATACCGAAGGAGCACTTC+TGG | 0.300314 | 4_3:+47670964 | None:intergenic |
| GGTATTGGCCATCCTCTTGC+TGG | 0.327491 | 4_3:-47668955 | Msa0644130:CDS |
| CCATCCATGGCGTAAATTAC+AGG | 0.342020 | 4_3:+47671915 | None:intergenic |
| TTCCAAACTGCTTTCTTAGT+TGG | 0.343184 | 4_3:-47669920 | Msa0644130:CDS |
| ATCTCATTAGTTTGTTCTTC+AGG | 0.350126 | 4_3:-47668991 | Msa0644130:CDS |
| TACATACCCATTTGTGAAAC+AGG | 0.360149 | 4_3:+47671769 | None:intergenic |
| AATTCGCCGCCGAGAAATTC+CGG | 0.371340 | 4_3:-47673314 | Msa0644130:CDS |
| TTTCCTCACATTATATTACT+TGG | 0.371935 | 4_3:+47668654 | None:intergenic |
| GGTTGCTTTATCCATGGTAT+TGG | 0.378782 | 4_3:-47668970 | Msa0644130:CDS |
| CATTTGTGGCACCTTGAACT+AGG | 0.386213 | 4_3:+47670935 | None:intergenic |
| CCCTCAAATTCAGTACCTCT+TGG | 0.387643 | 4_3:-47670292 | Msa0644130:intron |
| TTAGCCTCCTGTTTCACAAA+TGG | 0.406813 | 4_3:-47671776 | Msa0644130:CDS |
| GAGCTGTTCGTCATGCTGCC+TGG | 0.412460 | 4_3:-47669508 | Msa0644130:CDS |
| TTCACTGTATGGCTTAGAAT+AGG | 0.416346 | 4_3:-47668686 | Msa0644130:three_prime_UTR |
| TAGCCTCCTGTTTCACAAAT+GGG | 0.426157 | 4_3:-47671775 | Msa0644130:intron |
| AGAGAGAGCATCGAGATAAC+CGG | 0.433517 | 4_3:+47673295 | None:intergenic |
| GATAAAGGTGTTTCTGGATC+GGG | 0.436527 | 4_3:-47673393 | Msa0644130:five_prime_UTR |
| ATTTGTGGCACCTTGAACTA+GGG | 0.437158 | 4_3:+47670936 | None:intergenic |
| AAGAAAATCCAGTGCTTCCC+AGG | 0.438344 | 4_3:+47669490 | None:intergenic |
| TCAGAAATTAAGGTCCTTCA+GGG | 0.439567 | 4_3:-47669711 | Msa0644130:intron |
| TATTCATCTGCCCTAGTTCA+AGG | 0.439663 | 4_3:-47670946 | Msa0644130:CDS |
| ACTTTGTGATTTCCTGCATT+CGG | 0.440801 | 4_3:-47668931 | Msa0644130:CDS |
| TCGAGATAACCGGAATTTCT+CGG | 0.441952 | 4_3:+47673305 | None:intergenic |
| AAGATTCTAGAAAATGATAA+AGG | 0.447440 | 4_3:-47673408 | Msa0644130:five_prime_UTR |
| AATGATTGAATTGATGATGT+TGG | 0.448393 | 4_3:+47673665 | None:intergenic |
| TTACCAGCTTCAAAAGCTAA+AGG | 0.450026 | 4_3:-47669760 | Msa0644130:intron |
| TGTGAATGAACTTACTGATC+AGG | 0.450938 | 4_3:-47669879 | Msa0644130:intron |
| AGCTGTTCGTCATGCTGCCT+GGG | 0.455494 | 4_3:-47669507 | Msa0644130:CDS |
| AGAAAATATCAACCCGAGTA+AGG | 0.461893 | 4_3:+47668895 | None:intergenic |
| CAAACTGCTTTCTTAGTTGG+CGG | 0.463190 | 4_3:-47669917 | Msa0644130:CDS |
| AAGAAAGCAGTTTGGAAGAC+AGG | 0.463218 | 4_3:+47669926 | None:intergenic |
| TCATGCTGCCTGGGAAGCAC+TGG | 0.468375 | 4_3:-47669498 | Msa0644130:CDS |
| CGCCAACTAAGAAAGCAGTT+TGG | 0.468480 | 4_3:+47669918 | None:intergenic |
| ATAATCCAGAAGTGCTCCTT+CGG | 0.475177 | 4_3:-47670969 | Msa0644130:CDS |
| TTCTCCTGTAATTTACGCCA+TGG | 0.476208 | 4_3:-47671919 | Msa0644130:CDS |
| TGCATGTCCCTCGAGACATA+TGG | 0.476599 | 4_3:+47668832 | None:intergenic |
| ATGATTGAATTGATGATGTT+GGG | 0.478657 | 4_3:+47673666 | None:intergenic |
| TACAGAGTACTGGTTTGAGA+TGG | 0.480144 | 4_3:-47671212 | Msa0644130:intron |
| ATTGAATAAGATTCCTCTCC+AGG | 0.480234 | 4_3:-47670244 | Msa0644130:intron |
| TCTTCAGGTTGCTTTATCCA+TGG | 0.482081 | 4_3:-47668976 | Msa0644130:CDS |
| CTGGTTGGCAAGAGATGACT+CGG | 0.490132 | 4_3:+47668803 | None:intergenic |
| TTTGTACAAGTGCCTGAAAG+TGG | 0.498510 | 4_3:-47671858 | Msa0644130:CDS |
| GAAAGATAATGCAGCAGCAC+AGG | 0.500851 | 4_3:+47669732 | None:intergenic |
| TGATAAAGGTGTTTCTGGAT+CGG | 0.506894 | 4_3:-47673394 | Msa0644130:five_prime_UTR |
| TTGACATGATTGTCCAACTC+TGG | 0.511635 | 4_3:-47671824 | Msa0644130:CDS |
| TACAGGTTGGGCAGTACCCT+CGG | 0.514602 | 4_3:-47669015 | Msa0644130:intron |
| TTCATACCAGAAAACATTTG+TGG | 0.519635 | 4_3:+47670921 | None:intergenic |
| CCTGTAATTTACGCCATGGA+TGG | 0.522859 | 4_3:-47671915 | Msa0644130:CDS |
| ACAGAGTACTGGTTTGAGAT+GGG | 0.523005 | 4_3:-47671211 | Msa0644130:intron |
| CATGACGAACAGCTCTAGTC+GGG | 0.524027 | 4_3:+47669516 | None:intergenic |
| TTGGACAATCATGTCAAGGA+TGG | 0.533101 | 4_3:+47671830 | None:intergenic |
| AAAACAACAAAGGTAGAAGA+AGG | 0.536456 | 4_3:-47673538 | Msa0644130:five_prime_UTR |
| GATTCATAAGAAGCTTCAAC+GGG | 0.542429 | 4_3:-47673267 | Msa0644130:intron |
| GTAAAAGATTGTCCGAATGC+AGG | 0.543724 | 4_3:+47668919 | None:intergenic |
| TCATTCACAAATATATCTGC+AGG | 0.545748 | 4_3:+47669893 | None:intergenic |
| CAAATGACTGACTCCAGAGT+TGG | 0.548174 | 4_3:+47671811 | None:intergenic |
| GAAACACAACGGACCATCCA+TGG | 0.553280 | 4_3:+47671902 | None:intergenic |
| TTCTTACACGAAATATAGAC+TGG | 0.556069 | 4_3:+47670417 | None:intergenic |
| ACAGCTCTAGTCGGGTACAT+TGG | 0.557826 | 4_3:+47669524 | None:intergenic |
| AGTACTGGTTTGAGATGGGA+TGG | 0.560930 | 4_3:-47671207 | Msa0644130:CDS |
| AACAAACTAATGAGATGCCG+AGG | 0.563733 | 4_3:+47668998 | None:intergenic |
| AAGAAGCAAGGCATTCGAGC+TGG | 0.571008 | 4_3:+47668784 | None:intergenic |
| TGGACAATCATGTCAAGGAT+GGG | 0.572002 | 4_3:+47671831 | None:intergenic |
| GTCGGGTACATTGGACCACC+AGG | 0.572378 | 4_3:+47669533 | None:intergenic |
| GCATGACGAACAGCTCTAGT+CGG | 0.576852 | 4_3:+47669515 | None:intergenic |
| ACAAAGTTCCAGCAAGAGGA+TGG | 0.582995 | 4_3:+47668947 | None:intergenic |
| AGCAAGGCATTCGAGCTGGT+TGG | 0.584713 | 4_3:+47668788 | None:intergenic |
| CGATTCATAAGAAGCTTCAA+CGG | 0.588835 | 4_3:-47673268 | Msa0644130:CDS |
| CTGATAGGGTATACCTGGAG+AGG | 0.599368 | 4_3:+47670231 | None:intergenic |
| CCAGCTTCAAAAGCTAAAGG+TGG | 0.599881 | 4_3:-47669757 | Msa0644130:intron |
| CAAGAGGATGGCCAATACCA+TGG | 0.605415 | 4_3:+47668959 | None:intergenic |
| TATCAGAGGGTCAAGAAGCA+AGG | 0.608181 | 4_3:+47668772 | None:intergenic |
| AATCACAAAGTTCCAGCAAG+AGG | 0.620726 | 4_3:+47668943 | None:intergenic |
| AGTCCAAGTAATATAATGTG+AGG | 0.622601 | 4_3:-47668657 | Msa0644130:three_prime_UTR |
| AGAAAGCAGTTTGGAAGACA+GGG | 0.629453 | 4_3:+47669927 | None:intergenic |
| TCTCGGCGGCGAATTAGCGT+CGG | 0.631890 | 4_3:+47673322 | None:intergenic |
| AGAGTTGGACAATCATGTCA+AGG | 0.632220 | 4_3:+47671826 | None:intergenic |
| TTGACATTCAAACAAATACA+AGG | 0.632833 | 4_3:-47670445 | Msa0644130:CDS |
| CCTCTGCGACGAATTTGCCA+AGG | 0.637071 | 4_3:+47673146 | None:intergenic |
| ATAGACATCCATATGTCTCG+AGG | 0.648793 | 4_3:-47668840 | Msa0644130:exon |
| TGAAATGAAATATACCCAAG+AGG | 0.650360 | 4_3:+47671178 | None:intergenic |
| TAGCGTCGGACATTTCTGAT+CGG | 0.659020 | 4_3:+47673336 | None:intergenic |
| TAGACATCCATATGTCTCGA+GGG | 0.659196 | 4_3:-47668839 | Msa0644130:three_prime_UTR |
| CCTTGGCAAATTCGTCGCAG+AGG | 0.660365 | 4_3:-47673146 | Msa0644130:CDS |
| TGAAGAATAGCGTAGAAACG+TGG | 0.660999 | 4_3:+47673621 | None:intergenic |
| ACAAAGGTAGAAGAAGGTAG+CGG | 0.670271 | 4_3:-47673532 | Msa0644130:five_prime_UTR |
| GAATCTTATTCAATCGAGTG+TGG | 0.672963 | 4_3:+47670253 | None:intergenic |
| ATACCCATTTGTGAAACAGG+AGG | 0.674414 | 4_3:+47671772 | None:intergenic |
| CTAGGGCAGATGAATACCGA+AGG | 0.681129 | 4_3:+47670953 | None:intergenic |
| ACAAACTAATGAGATGCCGA+GGG | 0.696864 | 4_3:+47668999 | None:intergenic |
| TGGTTGGCAAGAGATGACTC+GGG | 0.709458 | 4_3:+47668804 | None:intergenic |
| AGCACATCATAGAAACACAA+CGG | 0.709751 | 4_3:+47671891 | None:intergenic |
| TGGTTGATGTAGTACCCTGA+AGG | 0.723094 | 4_3:+47669697 | None:intergenic |
| GTAATGCAACATCATCCAAG+AGG | 0.729405 | 4_3:+47670277 | None:intergenic |
| AGATAACCGGAATTTCTCGG+CGG | 0.785455 | 4_3:+47673308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAAAAAACAACAA+AGG | - | chr4_3:47668598-47668617 | Msa0644130:intron | 10.0% |
| !! | TATTTAAATATTGATCAATT+TGG | - | chr4_3:47668715-47668734 | Msa0644130:three_prime_UTR | 10.0% |
| !!! | TATCATATATTTTTTAACTT+TGG | - | chr4_3:47670866-47670885 | Msa0644130:intron | 10.0% |
| !!! | ATCATATATTTTTTAACTTT+GGG | - | chr4_3:47670867-47670886 | Msa0644130:intron | 10.0% |
| !!! | AAATTAAAATGTTACTTAAA+TGG | - | chr4_3:47671261-47671280 | Msa0644130:intron | 10.0% |
| !! | ACATAAGTTAAATTAAATAT+AGG | + | chr4_3:47671767-47671786 | None:intergenic | 10.0% |
| !!! | GAATGTTATTTTTTGTTTTA+TGG | + | chr4_3:47668568-47668587 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTAAATTACTAC+AGG | + | chr4_3:47669175-47669194 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr4_3:47669388-47669407 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr4_3:47669491-47669510 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr4_3:47669515-47669534 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr4_3:47669514-47669533 | Msa0644130:CDS | 15.0% |
| !! | TGTATATTTGAATCTAAATA+AGG | - | chr4_3:47670060-47670079 | Msa0644130:CDS | 15.0% |
| !! | GTATATTTGAATCTAAATAA+GGG | - | chr4_3:47670061-47670080 | Msa0644130:CDS | 15.0% |
| !! | TATATTTGAATCTAAATAAG+GGG | - | chr4_3:47670062-47670081 | Msa0644130:CDS | 15.0% |
| !!! | ATAATCTTTATTTTCTTGAT+AGG | - | chr4_3:47670088-47670107 | Msa0644130:CDS | 15.0% |
| !!! | TAATCTTTATTTTCTTGATA+GGG | - | chr4_3:47670089-47670108 | Msa0644130:CDS | 15.0% |
| !! | TCACTCTATAAATAATTATA+CGG | + | chr4_3:47670758-47670777 | None:intergenic | 15.0% |
| !! | TATATTATTATATCCCATTT+AGG | + | chr4_3:47671417-47671436 | None:intergenic | 15.0% |
| !! | TAAACAATAAAAATTCTAAC+CGG | + | chr4_3:47672685-47672704 | None:intergenic | 15.0% |
| !!! | TCTAGCAATTTATTTTAATT+TGG | + | chr4_3:47672724-47672743 | None:intergenic | 15.0% |
| !! | TTTAAGAAATGAGTTAAAAA+GGG | + | chr4_3:47672956-47672975 | None:intergenic | 15.0% |
| !!! | TTTTTAACTCATTTCTTAAA+GGG | - | chr4_3:47672956-47672975 | Msa0644130:intron | 15.0% |
| !!! | AAATATTGATGTTGTTTTTA+TGG | - | chr4_3:47673103-47673122 | Msa0644130:intron | 15.0% |
| !!! | TTTTTTGTTTTATGGTAACT+TGG | + | chr4_3:47668560-47668579 | None:intergenic | 20.0% |
| !!! | AAGATTCTAGAAAATGATAA+AGG | - | chr4_3:47668738-47668757 | Msa0644130:three_prime_UTR | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr4_3:47669428-47669447 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr4_3:47669505-47669524 | Msa0644130:CDS | 20.0% |
| !! | TAGAAATGTCATATTTGTAT+TGG | - | chr4_3:47669914-47669933 | Msa0644130:CDS | 20.0% |
| !! | CTATTCAAGATTAGAAAAAT+AGG | - | chr4_3:47669966-47669985 | Msa0644130:intron | 20.0% |
| !!! | AATCTTTATTTTCTTGATAG+GGG | - | chr4_3:47670090-47670109 | Msa0644130:CDS | 20.0% |
| !!! | TTTTATTTAGTGTGATAGTA+TGG | - | chr4_3:47670442-47670461 | Msa0644130:CDS | 20.0% |
| !!! | ATAGGAATTTGTATTTCTTT+TGG | + | chr4_3:47671064-47671083 | None:intergenic | 20.0% |
| !!! | ACATTTTAATTTATAACAGC+CGG | + | chr4_3:47671253-47671272 | None:intergenic | 20.0% |
| !!! | TATAATTTTGCAAAAAGACA+AGG | - | chr4_3:47671285-47671304 | Msa0644130:intron | 20.0% |
| !! | ATGGGATATAATAATATATG+TGG | - | chr4_3:47671419-47671438 | Msa0644130:intron | 20.0% |
| !! | TGGGATATAATAATATATGT+GGG | - | chr4_3:47671420-47671439 | Msa0644130:intron | 20.0% |
| !!! | ATATTGGATTGTTATTGAAA+CGG | + | chr4_3:47671517-47671536 | None:intergenic | 20.0% |
| !!! | TTCATTCTATTTTACAATTC+AGG | - | chr4_3:47672088-47672107 | Msa0644130:intron | 20.0% |
| !! | ATTATGTTACCTTTAATCAT+TGG | - | chr4_3:47672348-47672367 | Msa0644130:intron | 20.0% |
| !!! | GATCAATTAAAAGATTTTTG+AGG | - | chr4_3:47672818-47672837 | Msa0644130:intron | 20.0% |
| !!! | ATTTTTGAGGTCTTTTTTAT+GGG | - | chr4_3:47672831-47672850 | Msa0644130:intron | 20.0% |
| !!! | CTTTAAGAAATGAGTTAAAA+AGG | + | chr4_3:47672957-47672976 | None:intergenic | 20.0% |
| !!! | CTTTTTAACTCATTTCTTAA+AGG | - | chr4_3:47672955-47672974 | Msa0644130:intron | 20.0% |
| !!! | ATGATTGAATTGATGATGTT+GGG | + | chr4_3:47668483-47668502 | None:intergenic | 25.0% |
| !!! | AATGATTGAATTGATGATGT+TGG | + | chr4_3:47668484-47668503 | None:intergenic | 25.0% |
| ! | GTGGAAAACAAAAAAAAAGA+TGG | + | chr4_3:47668509-47668528 | None:intergenic | 25.0% |
| ! | ATGAAAAATGAAACACACAA+AGG | + | chr4_3:47668666-47668685 | None:intergenic | 25.0% |
| ! | TTTATGCGGAGAAAAAAAAA+TGG | - | chr4_3:47668910-47668929 | Msa0644130:CDS | 25.0% |
| !!! | AATTTTTGTTTTGATGCTAC+AGG | - | chr4_3:47668977-47668996 | Msa0644130:CDS | 25.0% |
| ! | AAAAGAGTGAATGATTTGAA+TGG | - | chr4_3:47669648-47669667 | Msa0644130:intron | 25.0% |
| !!! | ATGGTTTTTAGTTCATTGTT+TGG | - | chr4_3:47669727-47669746 | Msa0644130:CDS | 25.0% |
| ! | TCTTTATGAAGAACATGTAT+TGG | - | chr4_3:47669802-47669821 | Msa0644130:intron | 25.0% |
| !!! | TATAATTTTGCTATGTCACT+TGG | - | chr4_3:47669884-47669903 | Msa0644130:CDS | 25.0% |
| !! | ATTGATAACCATGTTAAATG+AGG | - | chr4_3:47670003-47670022 | Msa0644130:intron | 25.0% |
| !!! | ATCTTTATTTTCTTGATAGG+GGG | - | chr4_3:47670091-47670110 | Msa0644130:CDS | 25.0% |
| ! | TCAGAAAGCAAAAAACAATA+CGG | + | chr4_3:47670415-47670434 | None:intergenic | 25.0% |
| !!! | TATTGTTTTTTGCTTTCTGA+AGG | - | chr4_3:47670415-47670434 | Msa0644130:intron | 25.0% |
| !!! | ATTGTTTTTTGCTTTCTGAA+GGG | - | chr4_3:47670416-47670435 | Msa0644130:intron | 25.0% |
| ! | AATTCAAAACCAGCAATTAA+TGG | + | chr4_3:47670468-47670487 | None:intergenic | 25.0% |
| ! | AATATCATACAGTCAAATTG+AGG | + | chr4_3:47670564-47670583 | None:intergenic | 25.0% |
| ! | AATTTGACTGTATGATATTC+TGG | - | chr4_3:47670565-47670584 | Msa0644130:intron | 25.0% |
| !! | CTAAGGATTAAATCTAAAAC+CGG | + | chr4_3:47670682-47670701 | None:intergenic | 25.0% |
| ! | ATATGATATGCATTAGTTCA+TGG | + | chr4_3:47670854-47670873 | None:intergenic | 25.0% |
| !!! | TAGAATTTGCTATGAGAATT+TGG | - | chr4_3:47670902-47670921 | Msa0644130:intron | 25.0% |
| !! | TTGTATTTCTTTTGGCAATA+TGG | + | chr4_3:47671056-47671075 | None:intergenic | 25.0% |
| ! | AAAGTCAATTAGAAACTGAT+AGG | + | chr4_3:47671082-47671101 | None:intergenic | 25.0% |
| !!! | AACTGTGTTTTTTAATGGAT+AGG | + | chr4_3:47671548-47671567 | None:intergenic | 25.0% |
| ! | ATCCATTAAAAAACACAGTT+TGG | - | chr4_3:47671548-47671567 | Msa0644130:intron | 25.0% |
| ! | AAGACAGTCTTAATAACATT+TGG | + | chr4_3:47671582-47671601 | None:intergenic | 25.0% |
| !! | GGAAATGCAATAATTGTTTT+TGG | - | chr4_3:47671664-47671683 | Msa0644130:intron | 25.0% |
| ! | TTGACATTCAAACAAATACA+AGG | - | chr4_3:47671701-47671720 | Msa0644130:intron | 25.0% |
| ! | TTATGTGTATCATCTGAATA+AGG | - | chr4_3:47671781-47671800 | Msa0644130:CDS | 25.0% |
| ! | AAAGTCCTATAAACAATTGT+TGG | + | chr4_3:47671969-47671988 | None:intergenic | 25.0% |
| ! | AAATTGACACCAATGATTAA+AGG | + | chr4_3:47672360-47672379 | None:intergenic | 25.0% |
| ! | GCATTATCTTTCAGAAATTA+AGG | - | chr4_3:47672425-47672444 | Msa0644130:intron | 25.0% |
| ! | TGTTAGCATAAACAAAAGAA+TGG | + | chr4_3:47672530-47672549 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGTTTATGCTAAC+AGG | - | chr4_3:47672529-47672548 | Msa0644130:intron | 25.0% |
| !!! | CTGATAGGAAATGTTTTTTT+GGG | + | chr4_3:47672763-47672782 | None:intergenic | 25.0% |
| !!! | TCTGATAGGAAATGTTTTTT+TGG | + | chr4_3:47672764-47672783 | None:intergenic | 25.0% |
| ! | TGATCTCAATAATGAAAGAT+GGG | + | chr4_3:47672803-47672822 | None:intergenic | 25.0% |
| ! | TTGATCTCAATAATGAAAGA+TGG | + | chr4_3:47672804-47672823 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGGTCTTTTTTA+TGG | - | chr4_3:47672830-47672849 | Msa0644130:intron | 25.0% |
| ! | TTAAATTTCCAACTGATTAC+AGG | - | chr4_3:47672887-47672906 | Msa0644130:intron | 25.0% |
| !!! | GTTTTTTTAAAATGACCAGA+TGG | - | chr4_3:47672921-47672940 | Msa0644130:intron | 25.0% |
| ! | GCAAACTAATATAAACTTTG+TGG | + | chr4_3:47672998-47673017 | None:intergenic | 25.0% |
| !!! | TTGTTTTTATGGTATCATAC+AGG | - | chr4_3:47673114-47673133 | Msa0644130:intron | 25.0% |
| ! | GGAAAAAAAGAAATATCAGA+GGG | + | chr4_3:47673390-47673409 | None:intergenic | 25.0% |
| ! | TGGAAAAAAAGAAATATCAG+AGG | + | chr4_3:47673391-47673410 | None:intergenic | 25.0% |
| !! | TGTATATTTTGTTCACTGTA+TGG | - | chr4_3:47673449-47673468 | Msa0644130:five_prime_UTR | 25.0% |
| ! | TTTCCTCACATTATATTACT+TGG | + | chr4_3:47673495-47673514 | None:intergenic | 25.0% |
| AAAACAACAAAGGTAGAAGA+AGG | - | chr4_3:47668608-47668627 | Msa0644130:intron | 30.0% | |
| !! | GAAAATGATAAAGGTGTTTC+TGG | - | chr4_3:47668747-47668766 | Msa0644130:three_prime_UTR | 30.0% |
| ! | GATCGGGATTAGAATTTTTA+GGG | - | chr4_3:47668769-47668788 | Msa0644130:three_prime_UTR | 30.0% |
| TCAAAAGCTACAATTACCTT+TGG | + | chr4_3:47669081-47669100 | None:intergenic | 30.0% | |
| TGTAATGTAATTGACTGACA+CGG | - | chr4_3:47669195-47669214 | Msa0644130:intron | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr4_3:47669596-47669615 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr4_3:47669597-47669616 | Msa0644130:CDS | 30.0% |
| GTCTTGTATTGCTAAATGTA+AGG | - | chr4_3:47669832-47669851 | Msa0644130:intron | 30.0% | |
| TGTATTCTCCTCATTTAACA+TGG | + | chr4_3:47670014-47670033 | None:intergenic | 30.0% | |
| ATGAGGAGAATACATAACAA+TGG | - | chr4_3:47670020-47670039 | Msa0644130:intron | 30.0% | |
| AAATAAAGAAAACCTCCACT+TGG | + | chr4_3:47670166-47670185 | None:intergenic | 30.0% | |
| ! | GACAGATGTAATTTTCAACA+AGG | - | chr4_3:47670191-47670210 | Msa0644130:intron | 30.0% |
| !!! | CGGTTTTAGATTTAATCCTT+AGG | - | chr4_3:47670680-47670699 | Msa0644130:intron | 30.0% |
| !! | GTTATGTTTTTACAGAGTAC+TGG | - | chr4_3:47670924-47670943 | Msa0644130:intron | 30.0% |
| TGAAATGAAATATACCCAAG+AGG | + | chr4_3:47670971-47670990 | None:intergenic | 30.0% | |
| !! | ATAGGCTTTCATTTGTTGTA+AGG | - | chr4_3:47671021-47671040 | Msa0644130:intron | 30.0% |
| TTCATACCAGAAAACATTTG+TGG | + | chr4_3:47671228-47671247 | None:intergenic | 30.0% | |
| !! | ATGTTTTCTGGTATGAATAC+CGG | - | chr4_3:47671231-47671250 | Msa0644130:intron | 30.0% |
| ! | AATTTTGCAAAAAGACAAGG+TGG | - | chr4_3:47671288-47671307 | Msa0644130:intron | 30.0% |
| TATTATATCCCATTTAGGAG+TGG | + | chr4_3:47671412-47671431 | None:intergenic | 30.0% | |
| TGGATAGGATAAAGTCATAT+TGG | + | chr4_3:47671533-47671552 | None:intergenic | 30.0% | |
| !!! | TGCCAAACTGTGTTTTTTAA+TGG | + | chr4_3:47671553-47671572 | None:intergenic | 30.0% |
| TGTTATTAAGACTGTCTTCA+TGG | - | chr4_3:47671584-47671603 | Msa0644130:intron | 30.0% | |
| GTTATTAAGACTGTCTTCAT+GGG | - | chr4_3:47671585-47671604 | Msa0644130:intron | 30.0% | |
| CATGTTTGGAAAATCAATCA+GGG | - | chr4_3:47671643-47671662 | Msa0644130:intron | 30.0% | |
| TTCTTACACGAAATATAGAC+TGG | + | chr4_3:47671732-47671751 | None:intergenic | 30.0% | |
| ATTTCGTGTAAGAATTCTAG+TGG | - | chr4_3:47671738-47671757 | Msa0644130:intron | 30.0% | |
| TTTCGTGTAAGAATTCTAGT+GGG | - | chr4_3:47671739-47671758 | Msa0644130:intron | 30.0% | |
| CAAAGAACATGCAAAAGAAA+TGG | + | chr4_3:47671829-47671848 | None:intergenic | 30.0% | |
| ! | GAGTTGGGATTTTATTAATG+CGG | - | chr4_3:47671943-47671962 | Msa0644130:CDS | 30.0% |
| ACCATTGCATCATTATTCAT+AGG | + | chr4_3:47672137-47672156 | None:intergenic | 30.0% | |
| TCATTCACAAATATATCTGC+AGG | + | chr4_3:47672256-47672275 | None:intergenic | 30.0% | |
| TTTGTTTATGCTAACAGGTA+TGG | - | chr4_3:47672534-47672553 | Msa0644130:intron | 30.0% | |
| !! | TTGTATAGTTTTACTTCTCC+TGG | - | chr4_3:47672595-47672614 | Msa0644130:intron | 30.0% |
| CAATATTTCCTGTAATCAGT+TGG | + | chr4_3:47672898-47672917 | None:intergenic | 30.0% | |
| AAGATCGTGCTTATGAATTA+CGG | + | chr4_3:47673052-47673071 | None:intergenic | 30.0% | |
| ! | TTTTATGGTATCATACAGGT+TGG | - | chr4_3:47673118-47673137 | Msa0644130:intron | 30.0% |
| TTTATGGTATCATACAGGTT+GGG | - | chr4_3:47673119-47673138 | Msa0644130:intron | 30.0% | |
| !! | ATCTCATTAGTTTGTTCTTC+AGG | - | chr4_3:47673155-47673174 | Msa0644130:intron | 30.0% |
| ! | ACAATCTTTTACTCCTTACT+CGG | - | chr4_3:47673238-47673257 | Msa0644130:intron | 30.0% |
| ! | GATATTTTCTACATGGGAAA+AGG | - | chr4_3:47673264-47673283 | Msa0644130:intron | 30.0% |
| !!! | TGTCTATTGTGTTTTTGGTT+TGG | + | chr4_3:47673293-47673312 | None:intergenic | 30.0% |
| ! | ATGGATGTCTATTGTGTTTT+TGG | + | chr4_3:47673298-47673317 | None:intergenic | 30.0% |
| !!! | TGTTTTTTACACATCACATC+AGG | + | chr4_3:47673414-47673433 | None:intergenic | 30.0% |
| AGTCCAAGTAATATAATGTG+AGG | - | chr4_3:47673489-47673508 | Msa0644130:five_prime_UTR | 30.0% | |
| !!! | CTCGTTTAGTTGTTTTTAAG+TGG | + | chr4_3:47673526-47673545 | None:intergenic | 30.0% |
| CACTTAAAAACAACTAAACG+AGG | - | chr4_3:47673524-47673543 | Msa0644130:five_prime_UTR | 30.0% | |
| GTGTAACCAAAAAAAAAACG+AGG | - | chr4_3:47673555-47673574 | Msa0644130:five_prime_UTR | 30.0% | |
| !! | GTTTTATGGTAACTTGGTGA+AGG | + | chr4_3:47668554-47668573 | None:intergenic | 35.0% |
| !! | TGATAAAGGTGTTTCTGGAT+CGG | - | chr4_3:47668752-47668771 | Msa0644130:three_prime_UTR | 35.0% |
| ! | GGATCGGGATTAGAATTTTT+AGG | - | chr4_3:47668768-47668787 | Msa0644130:three_prime_UTR | 35.0% |
| CGATTCATAAGAAGCTTCAA+CGG | - | chr4_3:47668878-47668897 | Msa0644130:CDS | 35.0% | |
| GATTCATAAGAAGCTTCAAC+GGG | - | chr4_3:47668879-47668898 | Msa0644130:CDS | 35.0% | |
| !!! | AACGGGTGAGTTTTTTTATG+CGG | - | chr4_3:47668896-47668915 | Msa0644130:CDS | 35.0% |
| !!! | TTTTGCTGATGTAGCTTTAG+AGG | - | chr4_3:47669043-47669062 | Msa0644130:intron | 35.0% |
| TGATTCAATAGCTATGAAGC+AGG | - | chr4_3:47669123-47669142 | Msa0644130:intron | 35.0% | |
| ATAGCTATGAAGCAGGTATA+CGG | - | chr4_3:47669130-47669149 | Msa0644130:intron | 35.0% | |
| TGTGATGTAATTGCATGTGT+CGG | - | chr4_3:47669279-47669298 | Msa0644130:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_3:47669362-47669381 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr4_3:47669462-47669481 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr4_3:47669466-47669485 | None:intergenic | 35.0% |
| ! | TTATCTTGTTTGCATGCTCA+TGG | - | chr4_3:47669708-47669727 | Msa0644130:intron | 35.0% |
| !! | TTTATTTTCTTGATAGGGGG+TGG | - | chr4_3:47670094-47670113 | Msa0644130:CDS | 35.0% |
| GCAAAACAAGAATTACCAAG+TGG | - | chr4_3:47670148-47670167 | Msa0644130:intron | 35.0% | |
| AAACAAGAATTACCAAGTGG+AGG | - | chr4_3:47670151-47670170 | Msa0644130:intron | 35.0% | |
| AGCACATCATAGAAACACAA+CGG | + | chr4_3:47670258-47670277 | None:intergenic | 35.0% | |
| TACATACCCATTTGTGAAAC+AGG | + | chr4_3:47670380-47670399 | None:intergenic | 35.0% | |
| ATAGTATGGCCATTAATTGC+TGG | - | chr4_3:47670456-47670475 | Msa0644130:intron | 35.0% | |
| TGAACCTGGTTATGATCATT+TGG | - | chr4_3:47670606-47670625 | Msa0644130:intron | 35.0% | |
| TACTCCAAATGATCATAACC+AGG | + | chr4_3:47670613-47670632 | None:intergenic | 35.0% | |
| ACAAACAGCTAAGTGAAAAC+GGG | + | chr4_3:47670646-47670665 | None:intergenic | 35.0% | |
| GACAAACAGCTAAGTGAAAA+CGG | + | chr4_3:47670647-47670666 | None:intergenic | 35.0% | |
| GTTTGTCAAATGCTTGAAAC+CGG | - | chr4_3:47670660-47670679 | Msa0644130:intron | 35.0% | |
| !!! | TTATTCCCGTTCTGTTTTTG+AGG | - | chr4_3:47670992-47671011 | Msa0644130:intron | 35.0% |
| !!! | TATTCCCGTTCTGTTTTTGA+GGG | - | chr4_3:47670993-47671012 | Msa0644130:intron | 35.0% |
| AAACCTCTACTATGATAGAG+TGG | - | chr4_3:47671611-47671630 | Msa0644130:intron | 35.0% | |
| AACCTCTACTATGATAGAGT+GGG | - | chr4_3:47671612-47671631 | Msa0644130:intron | 35.0% | |
| !! | CCTGATTGATTTTCCAAACA+TGG | + | chr4_3:47671645-47671664 | None:intergenic | 35.0% |
| CCATGTTTGGAAAATCAATC+AGG | - | chr4_3:47671642-47671661 | Msa0644130:intron | 35.0% | |
| GAATCTTATTCAATCGAGTG+TGG | + | chr4_3:47671896-47671915 | None:intergenic | 35.0% | |
| ATTGAATAAGATTCCTCTCC+AGG | - | chr4_3:47671902-47671921 | Msa0644130:CDS | 35.0% | |
| ! | ATATGTATCTTTTGCTCTCG+AGG | - | chr4_3:47672065-47672084 | Msa0644130:intron | 35.0% |
| TTACAATTCAGGTAGCCATT+CGG | - | chr4_3:47672099-47672118 | Msa0644130:intron | 35.0% | |
| GCCTATGAATAATGATGCAA+TGG | - | chr4_3:47672133-47672152 | Msa0644130:intron | 35.0% | |
| TTCCAAACTGCTTTCTTAGT+TGG | - | chr4_3:47672226-47672245 | Msa0644130:intron | 35.0% | |
| TGTGAATGAACTTACTGATC+AGG | - | chr4_3:47672267-47672286 | Msa0644130:intron | 35.0% | |
| AATTTCTTCATATGAGCCAG+AGG | + | chr4_3:47672331-47672350 | None:intergenic | 35.0% | |
| TTACCAGCTTCAAAAGCTAA+AGG | - | chr4_3:47672386-47672405 | Msa0644130:intron | 35.0% | |
| TTCAGAAATTAAGGTCCTTC+AGG | - | chr4_3:47672434-47672453 | Msa0644130:intron | 35.0% | |
| TCAGAAATTAAGGTCCTTCA+GGG | - | chr4_3:47672435-47672454 | Msa0644130:intron | 35.0% | |
| AACCATTCAGGTGCAATAAT+TGG | - | chr4_3:47672467-47672486 | Msa0644130:intron | 35.0% | |
| !! | TATAGTTTTACTTCTCCTGG+TGG | - | chr4_3:47672598-47672617 | Msa0644130:intron | 35.0% |
| !! | AGCACTGGATTTTCTTTTTC+CGG | - | chr4_3:47672663-47672682 | Msa0644130:intron | 35.0% |
| !!! | TAGGAAATGTTTTTTTGGGC+TGG | + | chr4_3:47672759-47672778 | None:intergenic | 35.0% |
| CTGGAAAATTGTACTCTGAT+AGG | + | chr4_3:47672778-47672797 | None:intergenic | 35.0% | |
| ! | CTATCAGAGTACAATTTTCC+AGG | - | chr4_3:47672776-47672795 | Msa0644130:intron | 35.0% |
| !!! | TTTGAGGTCTTTTTTATGGG+TGG | - | chr4_3:47672834-47672853 | Msa0644130:intron | 35.0% |
| TTATGGGTGGTATTATATGC+TGG | - | chr4_3:47672847-47672866 | Msa0644130:intron | 35.0% | |
| AAAGGGAAAAAGTAACCATC+TGG | + | chr4_3:47672939-47672958 | None:intergenic | 35.0% | |
| TTATTTAGCAGACAAGTACC+TGG | + | chr4_3:47673085-47673104 | None:intergenic | 35.0% | |
| ACTTTGTGATTTCCTGCATT+CGG | - | chr4_3:47673215-47673234 | Msa0644130:intron | 35.0% | |
| ! | CAATCTTTTACTCCTTACTC+GGG | - | chr4_3:47673239-47673258 | Msa0644130:intron | 35.0% |
| AGAAAATATCAACCCGAGTA+AGG | + | chr4_3:47673254-47673273 | None:intergenic | 35.0% | |
| !!! | TCGGGTTGATATTTTCTACA+TGG | - | chr4_3:47673257-47673276 | Msa0644130:intron | 35.0% |
| !!! | CGGGTTGATATTTTCTACAT+GGG | - | chr4_3:47673258-47673277 | Msa0644130:intron | 35.0% |
| ! | TTTTTACACATCACATCAGG+TGG | + | chr4_3:47673411-47673430 | None:intergenic | 35.0% |
| TTCACTGTATGGCTTAGAAT+AGG | - | chr4_3:47673460-47673479 | Msa0644130:five_prime_UTR | 35.0% | |
| !!! | ACAGTGCCTCGTTTTTTTTT+TGG | + | chr4_3:47673564-47673583 | None:intergenic | 35.0% |
| TGAAGAATAGCGTAGAAACG+TGG | + | chr4_3:47668528-47668547 | None:intergenic | 40.0% | |
| ACAAAGGTAGAAGAAGGTAG+CGG | - | chr4_3:47668614-47668633 | Msa0644130:intron | 40.0% | |
| !! | GATAAAGGTGTTTCTGGATC+GGG | - | chr4_3:47668753-47668772 | Msa0644130:three_prime_UTR | 40.0% |
| TCGAGATAACCGGAATTTCT+CGG | + | chr4_3:47668844-47668863 | None:intergenic | 40.0% | |
| GTGATGTAATTGCATGTGTC+GGG | - | chr4_3:47669280-47669299 | Msa0644130:intron | 40.0% | |
| AGAATGACTCTTCAAGTCGA+AGG | + | chr4_3:47669317-47669336 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_3:47669601-47669620 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr4_3:47669463-47669482 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_3:47669601-47669620 | Msa0644130:intron | 40.0% |
| TTCTCCTGTAATTTACGCCA+TGG | - | chr4_3:47670227-47670246 | Msa0644130:intron | 40.0% | |
| TTTGTACAAGTGCCTGAAAG+TGG | - | chr4_3:47670288-47670307 | Msa0644130:intron | 40.0% | |
| TGGACAATCATGTCAAGGAT+GGG | + | chr4_3:47670318-47670337 | None:intergenic | 40.0% | |
| TTGGACAATCATGTCAAGGA+TGG | + | chr4_3:47670319-47670338 | None:intergenic | 40.0% | |
| AGAGTTGGACAATCATGTCA+AGG | + | chr4_3:47670323-47670342 | None:intergenic | 40.0% | |
| TTGACATGATTGTCCAACTC+TGG | - | chr4_3:47670322-47670341 | Msa0644130:intron | 40.0% | |
| TTAGCCTCCTGTTTCACAAA+TGG | - | chr4_3:47670370-47670389 | Msa0644130:intron | 40.0% | |
| TAGCCTCCTGTTTCACAAAT+GGG | - | chr4_3:47670371-47670390 | Msa0644130:intron | 40.0% | |
| ATACCCATTTGTGAAACAGG+AGG | + | chr4_3:47670377-47670396 | None:intergenic | 40.0% | |
| ! | AAGAGTCACTCTTGATGACA+TGG | - | chr4_3:47670514-47670533 | Msa0644130:intron | 40.0% |
| TAGTATGCACTGAGTTCCTA+AGG | + | chr4_3:47670699-47670718 | None:intergenic | 40.0% | |
| !! | TACAGAGTACTGGTTTGAGA+TGG | - | chr4_3:47670934-47670953 | Msa0644130:CDS | 40.0% |
| !! | ACAGAGTACTGGTTTGAGAT+GGG | - | chr4_3:47670935-47670954 | Msa0644130:CDS | 40.0% |
| !!! | ATTCCCGTTCTGTTTTTGAG+GGG | - | chr4_3:47670994-47671013 | Msa0644130:intron | 40.0% |
| TAACCCCTCAAAAACAGAAC+GGG | + | chr4_3:47671000-47671019 | None:intergenic | 40.0% | |
| GTAACCCCTCAAAAACAGAA+CGG | + | chr4_3:47671001-47671020 | None:intergenic | 40.0% | |
| !!! | CTGTTTTTGAGGGGTTACAT+AGG | - | chr4_3:47671003-47671022 | Msa0644130:intron | 40.0% |
| !! | ATAATCCAGAAGTGCTCCTT+CGG | - | chr4_3:47671177-47671196 | Msa0644130:CDS | 40.0% |
| TATTCATCTGCCCTAGTTCA+AGG | - | chr4_3:47671200-47671219 | Msa0644130:CDS | 40.0% | |
| ATTTGTGGCACCTTGAACTA+GGG | + | chr4_3:47671213-47671232 | None:intergenic | 40.0% | |
| !! | AAGGTGCCACAAATGTTTTC+TGG | - | chr4_3:47671219-47671238 | Msa0644130:intron | 40.0% |
| ! | GCAAAAAGACAAGGTGGATT+TGG | - | chr4_3:47671294-47671313 | Msa0644130:intron | 40.0% |
| TATCCCATTTAGGAGTGGAT+TGG | + | chr4_3:47671407-47671426 | None:intergenic | 40.0% | |
| !!! | TTGTTTTTGGTGACATGTGC+AGG | - | chr4_3:47671677-47671696 | Msa0644130:intron | 40.0% |
| !! | CCAAGAGGTACTGAATTTGA+GGG | + | chr4_3:47671857-47671876 | None:intergenic | 40.0% |
| !! | TCCAAGAGGTACTGAATTTG+AGG | + | chr4_3:47671858-47671877 | None:intergenic | 40.0% |
| GTAATGCAACATCATCCAAG+AGG | + | chr4_3:47671872-47671891 | None:intergenic | 40.0% | |
| TGCGGCCAACAATTGTTTAT+AGG | - | chr4_3:47671961-47671980 | Msa0644130:intron | 40.0% | |
| !! | TCTACTTTTGTCGCAAGCAA+TGG | - | chr4_3:47671996-47672015 | Msa0644130:intron | 40.0% |
| CTACTTTCCGTTGAACTATC+AGG | - | chr4_3:47672033-47672052 | Msa0644130:intron | 40.0% | |
| AATATTATCCTCTCTGCAGC+TGG | - | chr4_3:47672169-47672188 | Msa0644130:intron | 40.0% | |
| AGAAAGCAGTTTGGAAGACA+GGG | + | chr4_3:47672222-47672241 | None:intergenic | 40.0% | |
| AAGAAAGCAGTTTGGAAGAC+AGG | + | chr4_3:47672223-47672242 | None:intergenic | 40.0% | |
| CAAACTGCTTTCTTAGTTGG+CGG | - | chr4_3:47672229-47672248 | Msa0644130:intron | 40.0% | |
| TTCATATGAGCCAGAGGATA+CGG | + | chr4_3:47672325-47672344 | None:intergenic | 40.0% | |
| GTCCAATTATTGCACCTGAA+TGG | + | chr4_3:47672472-47672491 | None:intergenic | 40.0% | |
| TCAGGTGCAATAATTGGACA+TGG | - | chr4_3:47672473-47672492 | Msa0644130:intron | 40.0% | |
| CAATAATGAAAGATGGGACC+TGG | + | chr4_3:47672797-47672816 | None:intergenic | 40.0% | |
| AGTTTGCAACATAGCACTAG+TGG | - | chr4_3:47673011-47673030 | Msa0644130:intron | 40.0% | |
| ACAAACTAATGAGATGCCGA+GGG | + | chr4_3:47673150-47673169 | None:intergenic | 40.0% | |
| AACAAACTAATGAGATGCCG+AGG | + | chr4_3:47673151-47673170 | None:intergenic | 40.0% | |
| !! | TCTTCAGGTTGCTTTATCCA+TGG | - | chr4_3:47673170-47673189 | Msa0644130:intron | 40.0% |
| ! | GGTTGCTTTATCCATGGTAT+TGG | - | chr4_3:47673176-47673195 | Msa0644130:intron | 40.0% |
| AATCACAAAGTTCCAGCAAG+AGG | + | chr4_3:47673206-47673225 | None:intergenic | 40.0% | |
| GTAAAAGATTGTCCGAATGC+AGG | + | chr4_3:47673230-47673249 | None:intergenic | 40.0% | |
| ATAGACATCCATATGTCTCG+AGG | - | chr4_3:47673306-47673325 | Msa0644130:CDS | 40.0% | |
| TAGACATCCATATGTCTCGA+GGG | - | chr4_3:47673307-47673326 | Msa0644130:CDS | 40.0% | |
| ! | TAGCGTCGGACATTTCTGAT+CGG | + | chr4_3:47668813-47668832 | None:intergenic | 45.0% |
| AGATAACCGGAATTTCTCGG+CGG | + | chr4_3:47668841-47668860 | None:intergenic | 45.0% | |
| !! | AGAGAGAGCATCGAGATAAC+CGG | + | chr4_3:47668854-47668873 | None:intergenic | 45.0% |
| !!! | TGTTTTGATGCTACAGGCCT+TGG | - | chr4_3:47668983-47669002 | Msa0644130:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_3:47669600-47669619 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4_3:47669600-47669619 | Msa0644130:intron | 45.0% |
| AAGCACGATAGTGTTGTGCA+TGG | - | chr4_3:47669684-47669703 | Msa0644130:intron | 45.0% | |
| CCATCCATGGCGTAAATTAC+AGG | + | chr4_3:47670234-47670253 | None:intergenic | 45.0% | |
| CCTGTAATTTACGCCATGGA+TGG | - | chr4_3:47670231-47670250 | Msa0644130:intron | 45.0% | |
| !! | AGGATGGGTTTTCCACTTTC+AGG | + | chr4_3:47670303-47670322 | None:intergenic | 45.0% |
| ! | CAAATGACTGACTCCAGAGT+TGG | + | chr4_3:47670338-47670357 | None:intergenic | 45.0% |
| !! | AGTACTGGTTTGAGATGGGA+TGG | - | chr4_3:47670939-47670958 | Msa0644130:CDS | 45.0% |
| !!! | ATGGGATGGTTTTGTCCTCT+TGG | - | chr4_3:47670953-47670972 | Msa0644130:CDS | 45.0% |
| !!! | TGGGATGGTTTTGTCCTCTT+GGG | - | chr4_3:47670954-47670973 | Msa0644130:CDS | 45.0% |
| CATTTGTGGCACCTTGAACT+AGG | + | chr4_3:47671214-47671233 | None:intergenic | 45.0% | |
| ! | CAAGGTGGATTTGGATTTGC+TGG | - | chr4_3:47671303-47671322 | Msa0644130:intron | 45.0% |
| GCTCCAATCCACTCCTAAAT+GGG | - | chr4_3:47671401-47671420 | Msa0644130:intron | 45.0% | |
| TGCCCACTCTATCATAGTAG+AGG | + | chr4_3:47671617-47671636 | None:intergenic | 45.0% | |
| CCCTCAAATTCAGTACCTCT+TGG | - | chr4_3:47671854-47671873 | Msa0644130:CDS | 45.0% | |
| AGGCTAATGACATCTCCGAA+TGG | + | chr4_3:47672117-47672136 | None:intergenic | 45.0% | |
| CGCCAACTAAGAAAGCAGTT+TGG | + | chr4_3:47672231-47672250 | None:intergenic | 45.0% | |
| ACGGCTCTCATTTGTGAACA+AGG | + | chr4_3:47672306-47672325 | None:intergenic | 45.0% | |
| !!! | CCACCTTTAGCTTTTGAAGC+TGG | + | chr4_3:47672392-47672411 | None:intergenic | 45.0% |
| CCAGCTTCAAAAGCTAAAGG+TGG | - | chr4_3:47672389-47672408 | Msa0644130:intron | 45.0% | |
| GAAAGATAATGCAGCAGCAC+AGG | + | chr4_3:47672417-47672436 | None:intergenic | 45.0% | |
| ! | TGGTTGATGTAGTACCCTGA+AGG | + | chr4_3:47672452-47672471 | None:intergenic | 45.0% |
| GGGTACTACATCAACCATTC+AGG | - | chr4_3:47672455-47672474 | Msa0644130:intron | 45.0% | |
| AAGAATGGCTTAGCTGAGTC+AGG | + | chr4_3:47672515-47672534 | None:intergenic | 45.0% | |
| AAGAAAATCCAGTGCTTCCC+AGG | + | chr4_3:47672659-47672678 | None:intergenic | 45.0% | |
| ACAAAGTTCCAGCAAGAGGA+TGG | + | chr4_3:47673202-47673221 | None:intergenic | 45.0% | |
| TATCAGAGGGTCAAGAAGCA+AGG | + | chr4_3:47673377-47673396 | None:intergenic | 45.0% | |
| AATTCGCCGCCGAGAAATTC+CGG | - | chr4_3:47668832-47668851 | Msa0644130:three_prime_UTR | 50.0% | |
| !! | GCAGAGGCGTAATTTGTTGC+AGG | - | chr4_3:47669016-47669035 | Msa0644130:intron | 50.0% |
| !! | GAGGTTGATGATCGAGCCAA+AGG | - | chr4_3:47669062-47669081 | Msa0644130:intron | 50.0% |
| TGACACTGGCACATCAACAC+TGG | - | chr4_3:47669227-47669246 | Msa0644130:intron | 50.0% | |
| TAATTGCATGTGTCGGGCAG+CGG | - | chr4_3:47669286-47669305 | Msa0644130:intron | 50.0% | |
| GAAACACAACGGACCATCCA+TGG | + | chr4_3:47670247-47670266 | None:intergenic | 50.0% | |
| ATGCTCAGTGTCTCTGAACC+TGG | - | chr4_3:47670592-47670611 | Msa0644130:intron | 50.0% | |
| !! | GAATACCGAAGGAGCACTTC+TGG | + | chr4_3:47671185-47671204 | None:intergenic | 50.0% |
| CTAGGGCAGATGAATACCGA+AGG | + | chr4_3:47671196-47671215 | None:intergenic | 50.0% | |
| CGCTCCAATCCACTCCTAAA+TGG | - | chr4_3:47671400-47671419 | Msa0644130:intron | 50.0% | |
| ! | AGTGGGCATTGTGCCATGTT+TGG | - | chr4_3:47671629-47671648 | Msa0644130:intron | 50.0% |
| CGCTGAGCCTGATAGTTCAA+CGG | + | chr4_3:47672043-47672062 | None:intergenic | 50.0% | |
| CAAATGAGAGCCGTATCCTC+TGG | - | chr4_3:47672312-47672331 | Msa0644130:intron | 50.0% | |
| ! | ACAGCTCTAGTCGGGTACAT+TGG | + | chr4_3:47672625-47672644 | None:intergenic | 50.0% |
| ! | CATGACGAACAGCTCTAGTC+GGG | + | chr4_3:47672633-47672652 | None:intergenic | 50.0% |
| ! | GCATGACGAACAGCTCTAGT+CGG | + | chr4_3:47672634-47672653 | None:intergenic | 50.0% |
| ACGATCTTCATGCAGACACC+AGG | - | chr4_3:47673064-47673083 | Msa0644130:intron | 50.0% | |
| CAAGAGGATGGCCAATACCA+TGG | + | chr4_3:47673190-47673209 | None:intergenic | 50.0% | |
| TGCATGTCCCTCGAGACATA+TGG | + | chr4_3:47673317-47673336 | None:intergenic | 50.0% | |
| TGGTTGGCAAGAGATGACTC+GGG | + | chr4_3:47673345-47673364 | None:intergenic | 50.0% | |
| CTGGTTGGCAAGAGATGACT+CGG | + | chr4_3:47673346-47673365 | None:intergenic | 50.0% | |
| ! | AAGAAGCAAGGCATTCGAGC+TGG | + | chr4_3:47673365-47673384 | None:intergenic | 50.0% |
| CCTCTGCGACGAATTTGCCA+AGG | + | chr4_3:47669003-47669022 | None:intergenic | 55.0% | |
| CCTTGGCAAATTCGTCGCAG+AGG | - | chr4_3:47669000-47669019 | Msa0644130:CDS | 55.0% | |
| ! | CGACTTTTCCAGCTGCAGAG+AGG | + | chr4_3:47672180-47672199 | None:intergenic | 55.0% |
| AGCTGTTCGTCATGCTGCCT+GGG | - | chr4_3:47672639-47672658 | Msa0644130:intron | 55.0% | |
| ! | TACAGGTTGGGCAGTACCCT+CGG | - | chr4_3:47673131-47673150 | Msa0644130:intron | 55.0% |
| !! | GGTATTGGCCATCCTCTTGC+TGG | - | chr4_3:47673191-47673210 | Msa0644130:intron | 55.0% |
| ! | AGCAAGGCATTCGAGCTGGT+TGG | + | chr4_3:47673361-47673380 | None:intergenic | 55.0% |
| TCTCGGCGGCGAATTAGCGT+CGG | + | chr4_3:47668827-47668846 | None:intergenic | 60.0% | |
| CACGGACACGACACTGACAC+TGG | - | chr4_3:47669213-47669232 | Msa0644130:intron | 60.0% | |
| GTCGGGTACATTGGACCACC+AGG | + | chr4_3:47672616-47672635 | None:intergenic | 60.0% | |
| GAGCTGTTCGTCATGCTGCC+TGG | - | chr4_3:47672638-47672657 | Msa0644130:intron | 60.0% | |
| ! | TCATGCTGCCTGGGAAGCAC+TGG | - | chr4_3:47672648-47672667 | Msa0644130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 47668436 | 47673732 | 47668436 | ID=Msa0644130;Name=Msa0644130 |
| chr4_3 | mRNA | 47668436 | 47673732 | 47668436 | ID=Msa0644130-mRNA-1;Parent=Msa0644130;Name=Msa0644130-mRNA-1;_AED=0.19;_eAED=0.19;_QI=384|0.75|0.84|1|0.83|0.84|13|392|371 |
| chr4_3 | exon | 47668436 | 47668591 | 47668436 | ID=Msa0644130-mRNA-1:exon:11304;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47668623 | 47669032 | 47668623 | ID=Msa0644130-mRNA-1:exon:11303;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47669484 | 47669617 | 47669484 | ID=Msa0644130-mRNA-1:exon:11302;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47669712 | 47669775 | 47669712 | ID=Msa0644130-mRNA-1:exon:11301;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47669880 | 47669980 | 47669880 | ID=Msa0644130-mRNA-1:exon:11300;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47670059 | 47670113 | 47670059 | ID=Msa0644130-mRNA-1:exon:11299;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47670245 | 47670301 | 47670245 | ID=Msa0644130-mRNA-1:exon:11298;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47670424 | 47670469 | 47670424 | ID=Msa0644130-mRNA-1:exon:11297;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47670928 | 47671010 | 47670928 | ID=Msa0644130-mRNA-1:exon:11296;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47671131 | 47671229 | 47671131 | ID=Msa0644130-mRNA-1:exon:11295;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47671776 | 47671972 | 47671776 | ID=Msa0644130-mRNA-1:exon:11294;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47673145 | 47673169 | 47673145 | ID=Msa0644130-mRNA-1:exon:11293;Parent=Msa0644130-mRNA-1 |
| chr4_3 | exon | 47673268 | 47673732 | 47673268 | ID=Msa0644130-mRNA-1:exon:11292;Parent=Msa0644130-mRNA-1 |
| chr4_3 | five_prime_UTR | 47673349 | 47673732 | 47673349 | ID=Msa0644130-mRNA-1:five_prime_utr;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47673268 | 47673348 | 47673268 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47673145 | 47673169 | 47673145 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47671776 | 47671972 | 47671776 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47671131 | 47671229 | 47671131 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47670928 | 47671010 | 47670928 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47670424 | 47670469 | 47670424 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47670245 | 47670301 | 47670245 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47670059 | 47670113 | 47670059 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47669880 | 47669980 | 47669880 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47669712 | 47669775 | 47669712 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47669484 | 47669617 | 47669484 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | CDS | 47668859 | 47669032 | 47668859 | ID=Msa0644130-mRNA-1:cds;Parent=Msa0644130-mRNA-1 |
| chr4_3 | three_prime_UTR | 47668623 | 47668858 | 47668623 | ID=Msa0644130-mRNA-1:three_prime_utr;Parent=Msa0644130-mRNA-1 |
| chr4_3 | three_prime_UTR | 47668436 | 47668591 | 47668436 | ID=Msa0644130-mRNA-1:three_prime_utr;Parent=Msa0644130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
