Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548090 | XP_003606657.1 | 90.909 | 363 | 8 | 2 | 1 | 343 | 1 | 358 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548090 | G7JUS4 | 90.909 | 363 | 8 | 2 | 1 | 343 | 1 | 358 | 0.0 | 666 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036140 | Msa0548090 | -0.810819 | 9.533249e-51 | -8.615850e-47 |
| Msa0433410 | Msa0548090 | 0.819754 | 9.836511e-53 | -8.615850e-47 |
| Msa0275690 | Msa0548090 | -0.806845 | 6.750358e-50 | -8.615850e-47 |
| Msa0548090 | Msa0585230 | -0.803382 | 3.579696e-49 | -8.615850e-47 |
| Msa0548090 | Msa0603110 | 0.961770 | 4.335684e-120 | -8.615850e-47 |
| Msa0548090 | Msa0644130 | 0.928877 | 1.548587e-92 | -8.615850e-47 |
| Msa0548090 | Msa0658570 | -0.810492 | 1.122098e-50 | -8.615850e-47 |
| Msa0548090 | Msa0672690 | -0.813752 | 2.183690e-51 | -8.615850e-47 |
| Msa0548090 | Msa0683950 | 0.986426 | 9.539853e-167 | -8.615850e-47 |
| Msa0548090 | Msa0807030 | -0.803071 | 4.151552e-49 | -8.615850e-47 |
| Msa0548090 | Msa0820770 | -0.800942 | 1.137278e-48 | -8.615850e-47 |
| Msa0548090 | Msa0832970 | -0.800689 | 1.281224e-48 | -8.615850e-47 |
| Msa0548090 | Msa0861090 | -0.801985 | 6.953171e-49 | -8.615850e-47 |
| Msa0548090 | Msa1018990 | 0.847075 | 1.454035e-59 | -8.615850e-47 |
| Msa0548090 | Msa1041730 | -0.800930 | 1.143698e-48 | -8.615850e-47 |
| Msa0548090 | Msa1124540 | 0.815643 | 8.321492e-52 | -8.615850e-47 |
| Msa0548090 | Msa1244720 | 0.804823 | 1.795157e-49 | -8.615850e-47 |
| Msa0548090 | Msa1376890 | -0.811199 | 7.890701e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548090 | MtrunA17_Chr4g0031101 | 90.909 | 363 | 8 | 2 | 1 | 343 | 1 | 358 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548090 | AT5G59960.1 | 70.435 | 345 | 77 | 2 | 12 | 336 | 16 | 355 | 4.33e-179 | 500 |
| Msa0548090 | AT5G59960.3 | 79.688 | 256 | 47 | 1 | 81 | 336 | 1 | 251 | 5.98e-152 | 427 |
| Msa0548090 | AT5G59960.2 | 70.447 | 291 | 66 | 1 | 12 | 282 | 16 | 306 | 1.66e-148 | 421 |
Find 96 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATGATAAAGGTGTTTC+TGG | 0.205030 | 4_1:-41787768 | Msa0548090:five_prime_UTR |
| TGATAATGTGTTGTTTAAAA+TGG | 0.218863 | 4_1:+41788076 | None:intergenic |
| GCATTATCTTTCAGAAATTA+AGG | 0.220788 | 4_1:-41784388 | Msa0548090:CDS |
| TATTTAAATATTGATCAATT+TGG | 0.231023 | 4_1:-41787800 | Msa0548090:five_prime_UTR |
| TTCAGAAATTAAGGTCCTTC+AGG | 0.292111 | 4_1:-41784379 | Msa0548090:CDS |
| GAATACCGAAGGAGCACTTC+TGG | 0.300314 | 4_1:+41785627 | None:intergenic |
| GGTATTGGCCATCCTCTTGC+TGG | 0.327491 | 4_1:-41783621 | Msa0548090:CDS |
| CCATCCATGGCGTAAATTAC+AGG | 0.342020 | 4_1:+41786549 | None:intergenic |
| TTCCAAACTGCTTTCTTAGT+TGG | 0.343184 | 4_1:-41784586 | Msa0548090:CDS |
| AAGAAAGCAGTTTGGAAAAC+AGG | 0.345106 | 4_1:+41784592 | None:intergenic |
| ATCTCATTAGTTTGTTCTTC+AGG | 0.350126 | 4_1:-41783657 | Msa0548090:CDS |
| TACATACCCATTTGTGAAAC+AGG | 0.360149 | 4_1:+41786403 | None:intergenic |
| AATTCGCCGCCGAGAAATTC+CGG | 0.371340 | 4_1:-41787683 | Msa0548090:CDS |
| TTTCCTCACATTATATTACT+TGG | 0.371935 | 4_1:+41783312 | None:intergenic |
| GGTTGCTTTATCCATGGTAT+TGG | 0.378782 | 4_1:-41783636 | Msa0548090:CDS |
| CATTTGTGGCACCTTGAACT+AGG | 0.386213 | 4_1:+41785598 | None:intergenic |
| CCCTCAAATTCAGTACCTCT+TGG | 0.387643 | 4_1:-41784958 | Msa0548090:intron |
| TTAGCCTCCTGTTTCACAAA+TGG | 0.406813 | 4_1:-41786410 | Msa0548090:CDS |
| GAGCTGTTCGTCATGCTGCC+TGG | 0.412460 | 4_1:-41784175 | Msa0548090:CDS |
| TTCACTGTATGGCTTAGAAT+AGG | 0.416346 | 4_1:-41783344 | Msa0548090:three_prime_UTR |
| TAGCCTCCTGTTTCACAAAT+GGG | 0.426157 | 4_1:-41786409 | Msa0548090:intron |
| AGAGAGAGCATCGAGATAAC+CGG | 0.433517 | 4_1:+41787664 | None:intergenic |
| GATAAAGGTGTTTCTGGATC+GGG | 0.436527 | 4_1:-41787762 | Msa0548090:five_prime_UTR |
| ATTTGTGGCACCTTGAACTA+GGG | 0.437158 | 4_1:+41785599 | None:intergenic |
| AAGAAAATCCAGTGCTTCCC+AGG | 0.438344 | 4_1:+41784157 | None:intergenic |
| TCAGAAATTAAGGTCCTTCA+GGG | 0.439567 | 4_1:-41784378 | Msa0548090:intron |
| TATTCATCTGCCCTAGTTCA+AGG | 0.439663 | 4_1:-41785609 | Msa0548090:CDS |
| ACTTTGTGATTTCCTGCATT+CGG | 0.440801 | 4_1:-41783597 | Msa0548090:CDS |
| TCGAGATAACCGGAATTTCT+CGG | 0.441952 | 4_1:+41787674 | None:intergenic |
| AAGATTCTAGAAAATGATAA+AGG | 0.447440 | 4_1:-41787777 | Msa0548090:five_prime_UTR |
| TTACCAGCTTCAAAAGCTAA+AGG | 0.450026 | 4_1:-41784427 | Msa0548090:intron |
| TGTGAATGAACTTACTGATC+AGG | 0.450938 | 4_1:-41784545 | Msa0548090:intron |
| CATAATACCCTCGAGACATA+TGG | 0.450973 | 4_1:+41783498 | None:intergenic |
| AGCTGTTCGTCATGCTGCCT+GGG | 0.455494 | 4_1:-41784174 | Msa0548090:CDS |
| AGAAAATATCAACCCGAGTA+AGG | 0.461893 | 4_1:+41783561 | None:intergenic |
| CAAACTGCTTTCTTAGTTGG+CGG | 0.463190 | 4_1:-41784583 | Msa0548090:CDS |
| TCATGCTGCCTGGGAAGCAC+TGG | 0.468375 | 4_1:-41784165 | Msa0548090:CDS |
| CGCCAACTAAGAAAGCAGTT+TGG | 0.468480 | 4_1:+41784584 | None:intergenic |
| ATAATCCAGAAGTGCTCCTT+CGG | 0.475177 | 4_1:-41785632 | Msa0548090:CDS |
| TTCTCCTGTAATTTACGCCA+TGG | 0.476208 | 4_1:-41786553 | Msa0548090:CDS |
| ATTGAATAAGATTCCTCTCC+AGG | 0.480234 | 4_1:-41784910 | Msa0548090:intron |
| TCTTCAGGTTGCTTTATCCA+TGG | 0.482081 | 4_1:-41783642 | Msa0548090:CDS |
| CTGGTTGGCAAGAGATGACT+CGG | 0.490132 | 4_1:+41783461 | None:intergenic |
| TTTGTACAAGTGCCTGAAAG+TGG | 0.498510 | 4_1:-41786492 | Msa0548090:CDS |
| GAAAGATAATGCAGCAGCAC+AGG | 0.500851 | 4_1:+41784399 | None:intergenic |
| TGATAAAGGTGTTTCTGGAT+CGG | 0.506894 | 4_1:-41787763 | Msa0548090:five_prime_UTR |
| TTGACATGATTGTCCAACTC+TGG | 0.511635 | 4_1:-41786458 | Msa0548090:CDS |
| TACAGGTTGGGCAGTACCCT+CGG | 0.514602 | 4_1:-41783681 | Msa0548090:intron |
| AATGACTGAATTGATGATGT+TGG | 0.514742 | 4_1:+41788034 | None:intergenic |
| TTCATACCAGAAAACATTTG+TGG | 0.519635 | 4_1:+41785584 | None:intergenic |
| CCTGTAATTTACGCCATGGA+TGG | 0.522859 | 4_1:-41786549 | Msa0548090:CDS |
| CATGACGAACAGCTCTAGTC+GGG | 0.524027 | 4_1:+41784183 | None:intergenic |
| ATGACTGAATTGATGATGTT+GGG | 0.528589 | 4_1:+41788035 | None:intergenic |
| AAACAACAAAAGGTAGAAGA+AGG | 0.530889 | 4_1:-41787907 | Msa0548090:five_prime_UTR |
| TTGGACAATCATGTCAAGGA+TGG | 0.533101 | 4_1:+41786464 | None:intergenic |
| GATTCATAAGAAGCTTCAAC+GGG | 0.542429 | 4_1:-41787636 | Msa0548090:intron |
| GTAAAAGATTGTCCGAATGC+AGG | 0.543724 | 4_1:+41783585 | None:intergenic |
| TCATTCACAAATATATCTGC+AGG | 0.545748 | 4_1:+41784559 | None:intergenic |
| CAAATGACTGACTCCAGAGT+TGG | 0.548174 | 4_1:+41786445 | None:intergenic |
| GAAACACAACGGACCATCCA+TGG | 0.553280 | 4_1:+41786536 | None:intergenic |
| TTCTTACACGAAATATAGAC+TGG | 0.556069 | 4_1:+41785082 | None:intergenic |
| ACAGCTCTAGTCGGGTACAT+TGG | 0.557826 | 4_1:+41784191 | None:intergenic |
| AACAAACTAATGAGATGCCG+AGG | 0.563733 | 4_1:+41783664 | None:intergenic |
| AAGAAGCAAGGCATTCGAGC+TGG | 0.571008 | 4_1:+41783442 | None:intergenic |
| TGGACAATCATGTCAAGGAT+GGG | 0.572002 | 4_1:+41786465 | None:intergenic |
| GTCGGGTACATTGGACCACC+AGG | 0.572378 | 4_1:+41784200 | None:intergenic |
| GCATGACGAACAGCTCTAGT+CGG | 0.576852 | 4_1:+41784182 | None:intergenic |
| ACAAAGTTCCAGCAAGAGGA+TGG | 0.582995 | 4_1:+41783613 | None:intergenic |
| AGCAAGGCATTCGAGCTGGT+TGG | 0.584713 | 4_1:+41783446 | None:intergenic |
| CGATTCATAAGAAGCTTCAA+CGG | 0.588835 | 4_1:-41787637 | Msa0548090:CDS |
| CTGATAGGGTATACCTGGAG+AGG | 0.599368 | 4_1:+41784897 | None:intergenic |
| CCAGCTTCAAAAGCTAAAGG+TGG | 0.599881 | 4_1:-41784424 | Msa0548090:intron |
| CAAGAGGATGGCCAATACCA+TGG | 0.605415 | 4_1:+41783625 | None:intergenic |
| TATCAGAGGGTCAAGAAGCA+AGG | 0.608181 | 4_1:+41783430 | None:intergenic |
| AATCACAAAGTTCCAGCAAG+AGG | 0.620726 | 4_1:+41783609 | None:intergenic |
| AGTCCAAGTAATATAATGTG+AGG | 0.622601 | 4_1:-41783315 | Msa0548090:three_prime_UTR |
| TCTCGGCGGCGAATTAGCGT+CGG | 0.631890 | 4_1:+41787691 | None:intergenic |
| AGAGTTGGACAATCATGTCA+AGG | 0.632220 | 4_1:+41786460 | None:intergenic |
| TTGACATTCAAACAAATACA+AGG | 0.632833 | 4_1:-41785110 | Msa0548090:CDS |
| AGAAAGCAGTTTGGAAAACA+GGG | 0.635503 | 4_1:+41784593 | None:intergenic |
| CCTCTGCGACGAATTTGCCA+AGG | 0.637071 | 4_1:+41787515 | None:intergenic |
| TAGCGTCGGACATTTCTGAT+CGG | 0.659020 | 4_1:+41787705 | None:intergenic |
| TAGACGTCCATATGTCTCGA+GGG | 0.659102 | 4_1:-41783505 | Msa0548090:three_prime_UTR |
| CCTTGGCAAATTCGTCGCAG+AGG | 0.660365 | 4_1:-41787515 | Msa0548090:CDS |
| TGAAGAATAGCGTAGAAACG+TGG | 0.660999 | 4_1:+41787991 | None:intergenic |
| CAAAAGGTAGAAGAAGGTAG+CGG | 0.663567 | 4_1:-41787901 | Msa0548090:five_prime_UTR |
| ATAGACGTCCATATGTCTCG+AGG | 0.664889 | 4_1:-41783506 | Msa0548090:exon |
| GAATCTTATTCAATCGAGTG+TGG | 0.672963 | 4_1:+41784919 | None:intergenic |
| ATACCCATTTGTGAAACAGG+AGG | 0.674414 | 4_1:+41786406 | None:intergenic |
| CTAGGGCAGATGAATACCGA+AGG | 0.681129 | 4_1:+41785616 | None:intergenic |
| ACAAACTAATGAGATGCCGA+GGG | 0.696864 | 4_1:+41783665 | None:intergenic |
| TGGTTGGCAAGAGATGACTC+GGG | 0.709458 | 4_1:+41783462 | None:intergenic |
| AGCACATCATAGAAACACAA+CGG | 0.709751 | 4_1:+41786525 | None:intergenic |
| TGGTTGATGTAGTACCCTGA+AGG | 0.723094 | 4_1:+41784364 | None:intergenic |
| GTAATGCAACATCATCCAAG+AGG | 0.729405 | 4_1:+41784943 | None:intergenic |
| AGATAACCGGAATTTCTCGG+CGG | 0.785455 | 4_1:+41787677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATATATTTTTTAATTT+TGG | - | chr4_1:41785285-41785304 | Msa0548090:intron | 0.0% |
| !!! | ATTATATATTTTTTAATTTT+GGG | - | chr4_1:41785286-41785305 | Msa0548090:intron | 0.0% |
| !! | TTAAAAAAAAAAACAACAAA+AGG | - | chr4_1:41783282-41783301 | Msa0548090:three_prime_UTR | 10.0% |
| !! | TATTTAAATATTGATCAATT+TGG | - | chr4_1:41783399-41783418 | Msa0548090:three_prime_UTR | 10.0% |
| !!! | AAATTAAAATGTTACTTAAA+TGG | - | chr4_1:41785651-41785670 | Msa0548090:CDS | 10.0% |
| !! | ACATAAGTTAAATTAAATAT+AGG | + | chr4_1:41786155-41786174 | None:intergenic | 10.0% |
| !!! | GAATGTTATTTTTTGTTTTA+TGG | + | chr4_1:41783251-41783270 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTAAATTACTAC+AGG | + | chr4_1:41783859-41783878 | None:intergenic | 15.0% |
| !! | TGTATATTTGAATCTAAATA+AGG | - | chr4_1:41784479-41784498 | Msa0548090:intron | 15.0% |
| !! | GTATATTTGAATCTAAATAA+GGG | - | chr4_1:41784480-41784499 | Msa0548090:intron | 15.0% |
| !! | TATATTTGAATCTAAATAAG+GGG | - | chr4_1:41784481-41784500 | Msa0548090:intron | 15.0% |
| !!! | ATAATCTTTATTTTCTTGAT+AGG | - | chr4_1:41784507-41784526 | Msa0548090:intron | 15.0% |
| !!! | TAATCTTTATTTTCTTGATA+GGG | - | chr4_1:41784508-41784527 | Msa0548090:intron | 15.0% |
| !! | TCACTCTATAAATAATTATA+CGG | + | chr4_1:41785177-41785196 | None:intergenic | 15.0% |
| !! | TATATTATTATATCCCATTT+AGG | + | chr4_1:41785806-41785825 | None:intergenic | 15.0% |
| !! | TAAACAATAAAAAATCTAAC+CGG | + | chr4_1:41787071-41787090 | None:intergenic | 15.0% |
| !!! | TCTAGCAATTTATTTTAATT+TGG | + | chr4_1:41787110-41787129 | None:intergenic | 15.0% |
| !! | TTTAAGAAATGAGTTAAAAA+GGG | + | chr4_1:41787343-41787362 | None:intergenic | 15.0% |
| !!! | TTTTTAACTCATTTCTTAAA+GGG | - | chr4_1:41787343-41787362 | Msa0548090:intron | 15.0% |
| !!! | AAATATTGATGTTGTTTTTA+TGG | - | chr4_1:41787490-41787509 | Msa0548090:intron | 15.0% |
| !!! | TTTTTTGTTTTATGGTAACT+TGG | + | chr4_1:41783243-41783262 | None:intergenic | 20.0% |
| !!! | AAGATTCTAGAAAATGATAA+AGG | - | chr4_1:41783422-41783441 | Msa0548090:three_prime_UTR | 20.0% |
| !! | TAGAAATGTCATATTTGTAT+TGG | - | chr4_1:41784333-41784352 | Msa0548090:intron | 20.0% |
| !! | CTATTCAAGATTAGAAAAAT+AGG | - | chr4_1:41784385-41784404 | Msa0548090:CDS | 20.0% |
| !!! | AATCTTTATTTTCTTGATAG+GGG | - | chr4_1:41784509-41784528 | Msa0548090:intron | 20.0% |
| !!! | TTTTATTTAGTGTGATAGTA+TGG | - | chr4_1:41784861-41784880 | Msa0548090:intron | 20.0% |
| !! | ATATAATATGCATTAGTTCA+TGG | + | chr4_1:41785273-41785292 | None:intergenic | 20.0% |
| !!! | ACATTTTAATTTATAACAGC+CGG | + | chr4_1:41785643-41785662 | None:intergenic | 20.0% |
| !!! | TATAATTTTGCAAAAAGACA+AGG | - | chr4_1:41785675-41785694 | Msa0548090:intron | 20.0% |
| !! | ATGGGATATAATAATATATG+TGG | - | chr4_1:41785808-41785827 | Msa0548090:intron | 20.0% |
| !! | TGGGATATAATAATATATGT+GGG | - | chr4_1:41785809-41785828 | Msa0548090:intron | 20.0% |
| !!! | ATATTGGATTGTTATTGAAA+CGG | + | chr4_1:41785905-41785924 | None:intergenic | 20.0% |
| !!! | TTCATTCTATTTTACAATTC+AGG | - | chr4_1:41786475-41786494 | Msa0548090:CDS | 20.0% |
| !! | ATTATGTTACCTTTAATCAT+TGG | - | chr4_1:41786735-41786754 | Msa0548090:intron | 20.0% |
| !!! | GATCAATTAAAAGATTTTTG+AGG | - | chr4_1:41787204-41787223 | Msa0548090:intron | 20.0% |
| !!! | ATTTTTGAGGTCTTTTTTAT+GGG | - | chr4_1:41787217-41787236 | Msa0548090:intron | 20.0% |
| !!! | CTTTAAGAAATGAGTTAAAA+AGG | + | chr4_1:41787344-41787363 | None:intergenic | 20.0% |
| !!! | CTTTTTAACTCATTTCTTAA+AGG | - | chr4_1:41787342-41787361 | Msa0548090:intron | 20.0% |
| ! | ATGAAAAATGAAACACACAA+AGG | + | chr4_1:41783350-41783369 | None:intergenic | 25.0% |
| ! | TTTATGCGGAGAAAAAAAAA+TGG | - | chr4_1:41783594-41783613 | Msa0548090:CDS | 25.0% |
| !!! | AATTTTTGTTTTGATGCTAC+AGG | - | chr4_1:41783661-41783680 | Msa0548090:CDS | 25.0% |
| ! | AAAAGAGTGAATGATTTGAA+TGG | - | chr4_1:41784067-41784086 | Msa0548090:intron | 25.0% |
| !!! | ATGGTTTTTAGTTCATTGTT+TGG | - | chr4_1:41784146-41784165 | Msa0548090:CDS | 25.0% |
| ! | TCTTTATGAAGAACATGTAT+TGG | - | chr4_1:41784221-41784240 | Msa0548090:CDS | 25.0% |
| !!! | TATAATTTTGCTATGTCACT+TGG | - | chr4_1:41784303-41784322 | Msa0548090:intron | 25.0% |
| !! | ATTGATAACCATGTTAAATG+AGG | - | chr4_1:41784422-41784441 | Msa0548090:CDS | 25.0% |
| !!! | ATCTTTATTTTCTTGATAGG+GGG | - | chr4_1:41784510-41784529 | Msa0548090:intron | 25.0% |
| ! | TCAGAAAGCAAAAAACAATA+CGG | + | chr4_1:41784834-41784853 | None:intergenic | 25.0% |
| !!! | TATTGTTTTTTGCTTTCTGA+AGG | - | chr4_1:41784834-41784853 | Msa0548090:intron | 25.0% |
| !!! | ATTGTTTTTTGCTTTCTGAA+GGG | - | chr4_1:41784835-41784854 | Msa0548090:intron | 25.0% |
| ! | AATTCAAAACCAGCAATTAA+TGG | + | chr4_1:41784887-41784906 | None:intergenic | 25.0% |
| ! | AATATCATACAGTCAAATTG+AGG | + | chr4_1:41784983-41785002 | None:intergenic | 25.0% |
| ! | AATTTGACTGTATGATATTC+TGG | - | chr4_1:41784984-41785003 | Msa0548090:intron | 25.0% |
| !!! | TGGTTTTAGATTTAATCCTT+AGG | - | chr4_1:41785099-41785118 | Msa0548090:CDS | 25.0% |
| !!! | TAGAATTTGCTATGAGAATT+TGG | - | chr4_1:41785321-41785340 | Msa0548090:intron | 25.0% |
| !! | TTGTATTTCTTTTGGCAATA+TGG | + | chr4_1:41785446-41785465 | None:intergenic | 25.0% |
| !! | ATAGGAACTTGTATTTCTTT+TGG | + | chr4_1:41785454-41785473 | None:intergenic | 25.0% |
| ! | AAAGTCAATTAGAAACTGAT+AGG | + | chr4_1:41785472-41785491 | None:intergenic | 25.0% |
| !!! | AACTGTGTTTTTTAATGGAT+AGG | + | chr4_1:41785936-41785955 | None:intergenic | 25.0% |
| ! | ATCCATTAAAAAACACAGTT+TGG | - | chr4_1:41785936-41785955 | Msa0548090:intron | 25.0% |
| ! | AAGACAGTCTTAATAACATT+TGG | + | chr4_1:41785970-41785989 | None:intergenic | 25.0% |
| !! | GGAAATGCAATAATTGTTTT+TGG | - | chr4_1:41786052-41786071 | Msa0548090:intron | 25.0% |
| ! | TTGACATTCAAACAAATACA+AGG | - | chr4_1:41786089-41786108 | Msa0548090:intron | 25.0% |
| ! | TTATGTGTATCATCTGAATA+AGG | - | chr4_1:41786169-41786188 | Msa0548090:intron | 25.0% |
| ! | AAAGTCCTATAAACAATTGT+TGG | + | chr4_1:41786356-41786375 | None:intergenic | 25.0% |
| ! | AAATTGACACCAATGATTAA+AGG | + | chr4_1:41786747-41786766 | None:intergenic | 25.0% |
| ! | GCATTATCTTTCAGAAATTA+AGG | - | chr4_1:41786811-41786830 | Msa0548090:intron | 25.0% |
| ! | TGTTAGCATAAACAAAAGAA+TGG | + | chr4_1:41786916-41786935 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGTTTATGCTAAC+AGG | - | chr4_1:41786915-41786934 | Msa0548090:intron | 25.0% |
| !!! | CTGATAGGAAATGTTTTTTT+GGG | + | chr4_1:41787149-41787168 | None:intergenic | 25.0% |
| !!! | TCTGATAGGAAATGTTTTTT+TGG | + | chr4_1:41787150-41787169 | None:intergenic | 25.0% |
| ! | TGATCTCAATAATGAAAGAT+GGG | + | chr4_1:41787189-41787208 | None:intergenic | 25.0% |
| ! | TTGATCTCAATAATGAAAGA+TGG | + | chr4_1:41787190-41787209 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGGTCTTTTTTA+TGG | - | chr4_1:41787216-41787235 | Msa0548090:intron | 25.0% |
| !!! | GTTTTTTTAAAATGACCAGA+TGG | - | chr4_1:41787308-41787327 | Msa0548090:intron | 25.0% |
| ! | AAGATTGTGCTTATGAATTA+CGG | + | chr4_1:41787439-41787458 | None:intergenic | 25.0% |
| !!! | TTGTTTTTATGGTATCATAC+AGG | - | chr4_1:41787501-41787520 | Msa0548090:intron | 25.0% |
| ! | GGAAAAAAAGAAATATCAGA+GGG | + | chr4_1:41787785-41787804 | None:intergenic | 25.0% |
| ! | TGGAAAAAAAGAAATATCAG+AGG | + | chr4_1:41787786-41787805 | None:intergenic | 25.0% |
| !! | TGTATATTTTGTTCACTGTA+TGG | - | chr4_1:41787844-41787863 | Msa0548090:five_prime_UTR | 25.0% |
| ! | TTTCCTCACATTATATTACT+TGG | + | chr4_1:41787890-41787909 | None:intergenic | 25.0% |
| !! | ATGACTGAATTGATGATGTT+GGG | + | chr4_1:41783167-41783186 | None:intergenic | 30.0% |
| !! | AATGACTGAATTGATGATGT+TGG | + | chr4_1:41783168-41783187 | None:intergenic | 30.0% |
| CGTGGAAAACAAAAAAAAGA+TGG | + | chr4_1:41783193-41783212 | None:intergenic | 30.0% | |
| AAACAACAAAAGGTAGAAGA+AGG | - | chr4_1:41783292-41783311 | Msa0548090:three_prime_UTR | 30.0% | |
| !! | GAAAATGATAAAGGTGTTTC+TGG | - | chr4_1:41783431-41783450 | Msa0548090:three_prime_UTR | 30.0% |
| ! | GATCGGGATTAGAATTTTTA+GGG | - | chr4_1:41783453-41783472 | Msa0548090:three_prime_UTR | 30.0% |
| TCAAAAGCTACAATTACCTT+TGG | + | chr4_1:41783765-41783784 | None:intergenic | 30.0% | |
| TGTAATGTAATTGACTGACA+CGG | - | chr4_1:41783879-41783898 | Msa0548090:intron | 30.0% | |
| GTCTTGTATTGCTAAATGTA+AGG | - | chr4_1:41784251-41784270 | Msa0548090:CDS | 30.0% | |
| TGTATTCTCCTCATTTAACA+TGG | + | chr4_1:41784433-41784452 | None:intergenic | 30.0% | |
| ATGAGGAGAATACATAACAA+TGG | - | chr4_1:41784439-41784458 | Msa0548090:intron | 30.0% | |
| AAATAAAGAAAACCTCCACT+TGG | + | chr4_1:41784585-41784604 | None:intergenic | 30.0% | |
| ! | GACAGATGTAATTTTCAACA+AGG | - | chr4_1:41784610-41784629 | Msa0548090:CDS | 30.0% |
| !! | GTTATGTTTTTACAGAGTAC+TGG | - | chr4_1:41785343-41785362 | Msa0548090:intron | 30.0% |
| !! | ATAGGCTTTCATTTGTTGTA+AGG | - | chr4_1:41785411-41785430 | Msa0548090:intron | 30.0% |
| TGTAAGTGTATTGAGAAGTT+AGG | + | chr4_1:41785527-41785546 | None:intergenic | 30.0% | |
| TTCATACCAGAAAACATTTG+TGG | + | chr4_1:41785618-41785637 | None:intergenic | 30.0% | |
| !! | ATGTTTTCTGGTATGAATAC+CGG | - | chr4_1:41785621-41785640 | Msa0548090:CDS | 30.0% |
| ! | AATTTTGCAAAAAGACAAGG+TGG | - | chr4_1:41785678-41785697 | Msa0548090:intron | 30.0% |
| TATTATATCCCATTTAGGAG+TGG | + | chr4_1:41785801-41785820 | None:intergenic | 30.0% | |
| TGGATAGGATAAAGTCATAT+TGG | + | chr4_1:41785921-41785940 | None:intergenic | 30.0% | |
| !!! | TGCCAAACTGTGTTTTTTAA+TGG | + | chr4_1:41785941-41785960 | None:intergenic | 30.0% |
| TGTTATTAAGACTGTCTTCA+TGG | - | chr4_1:41785972-41785991 | Msa0548090:intron | 30.0% | |
| GTTATTAAGACTGTCTTCAT+GGG | - | chr4_1:41785973-41785992 | Msa0548090:intron | 30.0% | |
| CATGTTTGGAAAATCAATCA+GGG | - | chr4_1:41786031-41786050 | Msa0548090:intron | 30.0% | |
| TTCTTACACGAAATATAGAC+TGG | + | chr4_1:41786120-41786139 | None:intergenic | 30.0% | |
| ATTTCGTGTAAGAATTCTAG+TGG | - | chr4_1:41786126-41786145 | Msa0548090:intron | 30.0% | |
| TTTCGTGTAAGAATTCTAGT+GGG | - | chr4_1:41786127-41786146 | Msa0548090:intron | 30.0% | |
| CAAAGAACATGCAAAAGAAA+TGG | + | chr4_1:41786216-41786235 | None:intergenic | 30.0% | |
| ! | GAGTTGGGATTTTATTAATG+CGG | - | chr4_1:41786330-41786349 | Msa0548090:intron | 30.0% |
| !! | CTACTTTTCATTGAACTATC+AGG | - | chr4_1:41786420-41786439 | Msa0548090:CDS | 30.0% |
| ACCATTGCATCATTATTCAT+AGG | + | chr4_1:41786524-41786543 | None:intergenic | 30.0% | |
| TCATTCACAAATATATCTGC+AGG | + | chr4_1:41786643-41786662 | None:intergenic | 30.0% | |
| TTTGTTTATGCTAACAGGTA+TGG | - | chr4_1:41786920-41786939 | Msa0548090:intron | 30.0% | |
| !! | TTGTATAGTTTTACTTCTCC+TGG | - | chr4_1:41786981-41787000 | Msa0548090:intron | 30.0% |
| ! | TTAAATTTCCCACTGATTAC+AGG | - | chr4_1:41787274-41787293 | Msa0548090:intron | 30.0% |
| CAATATTTCCTGTAATCAGT+GGG | + | chr4_1:41787285-41787304 | None:intergenic | 30.0% | |
| TCAATATTTCCTGTAATCAG+TGG | + | chr4_1:41787286-41787305 | None:intergenic | 30.0% | |
| GCAAACTAATATGAACTTTG+TGG | + | chr4_1:41787385-41787404 | None:intergenic | 30.0% | |
| ! | TTTTATGGTATCATACAGGT+TGG | - | chr4_1:41787505-41787524 | Msa0548090:intron | 30.0% |
| TTTATGGTATCATACAGGTT+GGG | - | chr4_1:41787506-41787525 | Msa0548090:intron | 30.0% | |
| !! | ATCTCATTAGTTTGTTCTTC+AGG | - | chr4_1:41787542-41787561 | Msa0548090:intron | 30.0% |
| ! | ACAATCTTTTACTCCTTACT+CGG | - | chr4_1:41787625-41787644 | Msa0548090:intron | 30.0% |
| ! | GATATTTTCTACATGGGAAA+AGG | - | chr4_1:41787651-41787670 | Msa0548090:CDS | 30.0% |
| !!! | TGTTTTTTACACATCACATC+AGG | + | chr4_1:41787809-41787828 | None:intergenic | 30.0% |
| AGTCCAAGTAATATAATGTG+AGG | - | chr4_1:41787884-41787903 | Msa0548090:five_prime_UTR | 30.0% | |
| !!! | CTCGTTTAGTTGTTTTTAAG+TGG | + | chr4_1:41787921-41787940 | None:intergenic | 30.0% |
| CACTTAAAAACAACTAAACG+AGG | - | chr4_1:41787919-41787938 | Msa0548090:five_prime_UTR | 30.0% | |
| !! | GTTTTATGGTAACTTGGTGA+AGG | + | chr4_1:41783237-41783256 | None:intergenic | 35.0% |
| !! | TGATAAAGGTGTTTCTGGAT+CGG | - | chr4_1:41783436-41783455 | Msa0548090:three_prime_UTR | 35.0% |
| ! | GGATCGGGATTAGAATTTTT+AGG | - | chr4_1:41783452-41783471 | Msa0548090:three_prime_UTR | 35.0% |
| CGATTCATAAGAAGCTTCAA+CGG | - | chr4_1:41783562-41783581 | Msa0548090:CDS | 35.0% | |
| GATTCATAAGAAGCTTCAAC+GGG | - | chr4_1:41783563-41783582 | Msa0548090:CDS | 35.0% | |
| !!! | AACGGGTGAGTTTTTTTATG+CGG | - | chr4_1:41783580-41783599 | Msa0548090:CDS | 35.0% |
| !!! | TTTTGCTGATGTAGCTTTAG+AGG | - | chr4_1:41783727-41783746 | Msa0548090:intron | 35.0% |
| TGATTCAATAGCTATGAAGC+AGG | - | chr4_1:41783807-41783826 | Msa0548090:intron | 35.0% | |
| ATAGCTATGAAGCAGGTATA+CGG | - | chr4_1:41783814-41783833 | Msa0548090:intron | 35.0% | |
| TGTGATGTAATTGCATGTGT+CGG | - | chr4_1:41783973-41783992 | Msa0548090:intron | 35.0% | |
| ! | TTATCTTGTTTGCATGCTCA+TGG | - | chr4_1:41784127-41784146 | Msa0548090:intron | 35.0% |
| !! | TTTATTTTCTTGATAGGGGG+TGG | - | chr4_1:41784513-41784532 | Msa0548090:intron | 35.0% |
| GCAAAACAAGAATTACCAAG+TGG | - | chr4_1:41784567-41784586 | Msa0548090:CDS | 35.0% | |
| AAACAAGAATTACCAAGTGG+AGG | - | chr4_1:41784570-41784589 | Msa0548090:CDS | 35.0% | |
| AGCACATCATAGAAACACAA+CGG | + | chr4_1:41784677-41784696 | None:intergenic | 35.0% | |
| TACATACCCATTTGTGAAAC+AGG | + | chr4_1:41784799-41784818 | None:intergenic | 35.0% | |
| ATAGTATGGCCATTAATTGC+TGG | - | chr4_1:41784875-41784894 | Msa0548090:intron | 35.0% | |
| TGAACCTGGTTATGATCATT+TGG | - | chr4_1:41785025-41785044 | Msa0548090:intron | 35.0% | |
| TACTCCAAATGATCATAACC+AGG | + | chr4_1:41785032-41785051 | None:intergenic | 35.0% | |
| ACAAACAGCTAAGTGAAAAC+GGG | + | chr4_1:41785065-41785084 | None:intergenic | 35.0% | |
| GACAAACAGCTAAGTGAAAA+CGG | + | chr4_1:41785066-41785085 | None:intergenic | 35.0% | |
| GTTTGTCAAATGCTTGAAAC+TGG | - | chr4_1:41785079-41785098 | Msa0548090:intron | 35.0% | |
| !!! | TTTGTCCTCTTTGGTTTTTG+AGG | - | chr4_1:41785382-41785401 | Msa0548090:intron | 35.0% |
| !!! | TTGTCCTCTTTGGTTTTTGA+GGG | - | chr4_1:41785383-41785402 | Msa0548090:intron | 35.0% |
| AAACCTCTACTATGATAGAG+TGG | - | chr4_1:41785999-41786018 | Msa0548090:intron | 35.0% | |
| AACCTCTACTATGATAGAGT+GGG | - | chr4_1:41786000-41786019 | Msa0548090:intron | 35.0% | |
| !! | CCTGATTGATTTTCCAAACA+TGG | + | chr4_1:41786033-41786052 | None:intergenic | 35.0% |
| CCATGTTTGGAAAATCAATC+AGG | - | chr4_1:41786030-41786049 | Msa0548090:intron | 35.0% | |
| !!! | TTGTTTTTGGTGACATGTAC+AGG | - | chr4_1:41786065-41786084 | Msa0548090:intron | 35.0% |
| GAATCTTATTCAATCGAGTG+TGG | + | chr4_1:41786283-41786302 | None:intergenic | 35.0% | |
| ATTGAATAAGATTCCTCTCC+AGG | - | chr4_1:41786289-41786308 | Msa0548090:intron | 35.0% | |
| TAAAACTGATAGGGTATACC+TGG | + | chr4_1:41786310-41786329 | None:intergenic | 35.0% | |
| !!! | TACCCTATCAGTTTTAGAGT+TGG | - | chr4_1:41786314-41786333 | Msa0548090:intron | 35.0% |
| !!! | ACCCTATCAGTTTTAGAGTT+GGG | - | chr4_1:41786315-41786334 | Msa0548090:intron | 35.0% |
| !! | TCCCAACTCTAAAACTGATA+GGG | + | chr4_1:41786319-41786338 | None:intergenic | 35.0% |
| !! | ATCCCAACTCTAAAACTGAT+AGG | + | chr4_1:41786320-41786339 | None:intergenic | 35.0% |
| ! | ATATGTATCTTTTGCTCTCG+AGG | - | chr4_1:41786452-41786471 | Msa0548090:CDS | 35.0% |
| TTACAATTCAGGTAGCCATT+CGG | - | chr4_1:41786486-41786505 | Msa0548090:CDS | 35.0% | |
| GCCTATGAATAATGATGCAA+TGG | - | chr4_1:41786520-41786539 | Msa0548090:CDS | 35.0% | |
| AGAAAGCAGTTTGGAAAACA+GGG | + | chr4_1:41786609-41786628 | None:intergenic | 35.0% | |
| AAGAAAGCAGTTTGGAAAAC+AGG | + | chr4_1:41786610-41786629 | None:intergenic | 35.0% | |
| TTCCAAACTGCTTTCTTAGT+TGG | - | chr4_1:41786613-41786632 | Msa0548090:intron | 35.0% | |
| TGTGAATGAACTTACTGATC+AGG | - | chr4_1:41786654-41786673 | Msa0548090:intron | 35.0% | |
| AATTTCTTCATATGAGCCAG+AGG | + | chr4_1:41786718-41786737 | None:intergenic | 35.0% | |
| TTACCAGCTTCAAAAGCTAA+AGG | - | chr4_1:41786772-41786791 | Msa0548090:intron | 35.0% | |
| TTCAGAAATTAAGGTCCTTC+AGG | - | chr4_1:41786820-41786839 | Msa0548090:intron | 35.0% | |
| TCAGAAATTAAGGTCCTTCA+GGG | - | chr4_1:41786821-41786840 | Msa0548090:intron | 35.0% | |
| AACCATTCAGGTGCAATAAT+TGG | - | chr4_1:41786853-41786872 | Msa0548090:intron | 35.0% | |
| !! | TATAGTTTTACTTCTCCTGG+TGG | - | chr4_1:41786984-41787003 | Msa0548090:intron | 35.0% |
| !! | AGCACTGGATTTTCTTTTTC+CGG | - | chr4_1:41787049-41787068 | Msa0548090:intron | 35.0% |
| !!! | TAGGAAATGTTTTTTTGGGC+TGG | + | chr4_1:41787145-41787164 | None:intergenic | 35.0% |
| CTGGAAAATTGTACTCTGAT+AGG | + | chr4_1:41787164-41787183 | None:intergenic | 35.0% | |
| ! | CTATCAGAGTACAATTTTCC+AGG | - | chr4_1:41787162-41787181 | Msa0548090:intron | 35.0% |
| !!! | TTTGAGGTCTTTTTTATGGG+TGG | - | chr4_1:41787220-41787239 | Msa0548090:intron | 35.0% |
| TATGGGTGGTATTATATGAC+TGG | - | chr4_1:41787234-41787253 | Msa0548090:intron | 35.0% | |
| AAAGGGAAAAAGTAACCATC+TGG | + | chr4_1:41787326-41787345 | None:intergenic | 35.0% | |
| TTATTTAGCAGACAAGTACC+TGG | + | chr4_1:41787472-41787491 | None:intergenic | 35.0% | |
| ACTTTGTGATTTCCTGCATT+CGG | - | chr4_1:41787602-41787621 | Msa0548090:intron | 35.0% | |
| ! | CAATCTTTTACTCCTTACTC+GGG | - | chr4_1:41787626-41787645 | Msa0548090:intron | 35.0% |
| AGAAAATATCAACCCGAGTA+AGG | + | chr4_1:41787641-41787660 | None:intergenic | 35.0% | |
| !!! | TCGGGTTGATATTTTCTACA+TGG | - | chr4_1:41787644-41787663 | Msa0548090:CDS | 35.0% |
| !!! | CGGGTTGATATTTTCTACAT+GGG | - | chr4_1:41787645-41787664 | Msa0548090:CDS | 35.0% |
| !!! | CGTCTATTGTGTTTTTGGTT+TGG | + | chr4_1:41787680-41787699 | None:intergenic | 35.0% |
| ! | ATGGACGTCTATTGTGTTTT+TGG | + | chr4_1:41787685-41787704 | None:intergenic | 35.0% |
| ! | TTTTTACACATCACATCAGG+TGG | + | chr4_1:41787806-41787825 | None:intergenic | 35.0% |
| TTCACTGTATGGCTTAGAAT+AGG | - | chr4_1:41787855-41787874 | Msa0548090:five_prime_UTR | 35.0% | |
| TGAAGAATAGCGTAGAAACG+TGG | + | chr4_1:41783211-41783230 | None:intergenic | 40.0% | |
| CAAAAGGTAGAAGAAGGTAG+CGG | - | chr4_1:41783298-41783317 | Msa0548090:three_prime_UTR | 40.0% | |
| !! | GATAAAGGTGTTTCTGGATC+GGG | - | chr4_1:41783437-41783456 | Msa0548090:three_prime_UTR | 40.0% |
| TCGAGATAACCGGAATTTCT+CGG | + | chr4_1:41783528-41783547 | None:intergenic | 40.0% | |
| GTGATGTAATTGCATGTGTC+GGG | - | chr4_1:41783974-41783993 | Msa0548090:intron | 40.0% | |
| AGAATGACTCTTCAAGTCGA+AGG | + | chr4_1:41784011-41784030 | None:intergenic | 40.0% | |
| TTCTCCTGTAATTTACGCCA+TGG | - | chr4_1:41784646-41784665 | Msa0548090:intron | 40.0% | |
| TTTGTACAAGTGCCTGAAAG+TGG | - | chr4_1:41784707-41784726 | Msa0548090:intron | 40.0% | |
| TGGACAATCATGTCAAGGAT+GGG | + | chr4_1:41784737-41784756 | None:intergenic | 40.0% | |
| TTGGACAATCATGTCAAGGA+TGG | + | chr4_1:41784738-41784757 | None:intergenic | 40.0% | |
| AGAGTTGGACAATCATGTCA+AGG | + | chr4_1:41784742-41784761 | None:intergenic | 40.0% | |
| TTGACATGATTGTCCAACTC+TGG | - | chr4_1:41784741-41784760 | Msa0548090:CDS | 40.0% | |
| TTAGCCTCCTGTTTCACAAA+TGG | - | chr4_1:41784789-41784808 | Msa0548090:intron | 40.0% | |
| TAGCCTCCTGTTTCACAAAT+GGG | - | chr4_1:41784790-41784809 | Msa0548090:intron | 40.0% | |
| ATACCCATTTGTGAAACAGG+AGG | + | chr4_1:41784796-41784815 | None:intergenic | 40.0% | |
| ! | AAGAGTCACTCTTGATGACA+TGG | - | chr4_1:41784933-41784952 | Msa0548090:CDS | 40.0% |
| TAGTATGCACTGAGTTCCTA+AGG | + | chr4_1:41785118-41785137 | None:intergenic | 40.0% | |
| !! | TACAGAGTACTGGTTTGAGA+TGG | - | chr4_1:41785353-41785372 | Msa0548090:intron | 40.0% |
| !! | ACAGAGTACTGGTTTGAGAT+GGG | - | chr4_1:41785354-41785373 | Msa0548090:intron | 40.0% |
| !!! | TGTCCTCTTTGGTTTTTGAG+GGG | - | chr4_1:41785384-41785403 | Msa0548090:intron | 40.0% |
| TAACCCCTCAAAAACCAAAG+AGG | + | chr4_1:41785390-41785409 | None:intergenic | 40.0% | |
| !! | TGGTTTTTGAGGGGTTACAT+AGG | - | chr4_1:41785393-41785412 | Msa0548090:intron | 40.0% |
| !! | ATAATCCAGAAGTGCTCCTT+CGG | - | chr4_1:41785567-41785586 | Msa0548090:intron | 40.0% |
| TATTCATCTGCCCTAGTTCA+AGG | - | chr4_1:41785590-41785609 | Msa0548090:intron | 40.0% | |
| ATTTGTGGCACCTTGAACTA+GGG | + | chr4_1:41785603-41785622 | None:intergenic | 40.0% | |
| !! | AAGGTGCCACAAATGTTTTC+TGG | - | chr4_1:41785609-41785628 | Msa0548090:CDS | 40.0% |
| ! | GCAAAAAGACAAGGTGGATT+TGG | - | chr4_1:41785684-41785703 | Msa0548090:intron | 40.0% |
| TATCCCATTTAGGAGTGGAT+TGG | + | chr4_1:41785796-41785815 | None:intergenic | 40.0% | |
| !! | CCAAGAGGTACTGAATTTGA+GGG | + | chr4_1:41786244-41786263 | None:intergenic | 40.0% |
| !! | TCCAAGAGGTACTGAATTTG+AGG | + | chr4_1:41786245-41786264 | None:intergenic | 40.0% |
| GTAATGCAACATCATCCAAG+AGG | + | chr4_1:41786259-41786278 | None:intergenic | 40.0% | |
| TGCGGCCAACAATTGTTTAT+AGG | - | chr4_1:41786348-41786367 | Msa0548090:intron | 40.0% | |
| !! | TCTACTTTTGTCGCAAGCAA+TGG | - | chr4_1:41786383-41786402 | Msa0548090:intron | 40.0% |
| AATATTATCCTCTCTGCAGC+TGG | - | chr4_1:41786556-41786575 | Msa0548090:CDS | 40.0% | |
| CAAACTGCTTTCTTAGTTGG+CGG | - | chr4_1:41786616-41786635 | Msa0548090:intron | 40.0% | |
| TTCATATGAGCCAGAGGATA+CGG | + | chr4_1:41786712-41786731 | None:intergenic | 40.0% | |
| GTCCAATTATTGCACCTGAA+TGG | + | chr4_1:41786858-41786877 | None:intergenic | 40.0% | |
| TCAGGTGCAATAATTGGACA+TGG | - | chr4_1:41786859-41786878 | Msa0548090:intron | 40.0% | |
| CAATAATGAAAGATGGGACC+TGG | + | chr4_1:41787183-41787202 | None:intergenic | 40.0% | |
| ACAAACTAATGAGATGCCGA+GGG | + | chr4_1:41787537-41787556 | None:intergenic | 40.0% | |
| AACAAACTAATGAGATGCCG+AGG | + | chr4_1:41787538-41787557 | None:intergenic | 40.0% | |
| !! | TCTTCAGGTTGCTTTATCCA+TGG | - | chr4_1:41787557-41787576 | Msa0548090:intron | 40.0% |
| ! | GGTTGCTTTATCCATGGTAT+TGG | - | chr4_1:41787563-41787582 | Msa0548090:intron | 40.0% |
| AATCACAAAGTTCCAGCAAG+AGG | + | chr4_1:41787593-41787612 | None:intergenic | 40.0% | |
| GTAAAAGATTGTCCGAATGC+AGG | + | chr4_1:41787617-41787636 | None:intergenic | 40.0% | |
| CATAATACCCTCGAGACATA+TGG | + | chr4_1:41787704-41787723 | None:intergenic | 40.0% | |
| ! | TAGCGTCGGACATTTCTGAT+CGG | + | chr4_1:41783497-41783516 | None:intergenic | 45.0% |
| AGATAACCGGAATTTCTCGG+CGG | + | chr4_1:41783525-41783544 | None:intergenic | 45.0% | |
| !! | AGAGAGAGCATCGAGATAAC+CGG | + | chr4_1:41783538-41783557 | None:intergenic | 45.0% |
| !!! | TGTTTTGATGCTACAGGCCT+TGG | - | chr4_1:41783667-41783686 | Msa0548090:CDS | 45.0% |
| AAGCACGATAGTGTTGTGCA+TGG | - | chr4_1:41784103-41784122 | Msa0548090:intron | 45.0% | |
| CCATCCATGGCGTAAATTAC+AGG | + | chr4_1:41784653-41784672 | None:intergenic | 45.0% | |
| CCTGTAATTTACGCCATGGA+TGG | - | chr4_1:41784650-41784669 | Msa0548090:intron | 45.0% | |
| !! | AGGATGGGTTTTCCACTTTC+AGG | + | chr4_1:41784722-41784741 | None:intergenic | 45.0% |
| ! | CAAATGACTGACTCCAGAGT+TGG | + | chr4_1:41784757-41784776 | None:intergenic | 45.0% |
| !! | AGTACTGGTTTGAGATGGGA+TGG | - | chr4_1:41785358-41785377 | Msa0548090:intron | 45.0% |
| !!! | TGGGATGGTTTTGTCCTCTT+TGG | - | chr4_1:41785373-41785392 | Msa0548090:intron | 45.0% |
| CATTTGTGGCACCTTGAACT+AGG | + | chr4_1:41785604-41785623 | None:intergenic | 45.0% | |
| ! | CAAGGTGGATTTGGATTTGC+TGG | - | chr4_1:41785693-41785712 | Msa0548090:intron | 45.0% |
| GCTCCAATCCACTCCTAAAT+GGG | - | chr4_1:41785790-41785809 | Msa0548090:intron | 45.0% | |
| TGCCCACTCTATCATAGTAG+AGG | + | chr4_1:41786005-41786024 | None:intergenic | 45.0% | |
| CCCTCAAATTCAGTACCTCT+TGG | - | chr4_1:41786241-41786260 | Msa0548090:intron | 45.0% | |
| AGGCTAATGACATCTCCGAA+TGG | + | chr4_1:41786504-41786523 | None:intergenic | 45.0% | |
| CGCCAACTAAGAAAGCAGTT+TGG | + | chr4_1:41786618-41786637 | None:intergenic | 45.0% | |
| ACGGCTCTCATTTGTGAACA+AGG | + | chr4_1:41786693-41786712 | None:intergenic | 45.0% | |
| !!! | CCACCTTTAGCTTTTGAAGC+TGG | + | chr4_1:41786778-41786797 | None:intergenic | 45.0% |
| CCAGCTTCAAAAGCTAAAGG+TGG | - | chr4_1:41786775-41786794 | Msa0548090:intron | 45.0% | |
| GAAAGATAATGCAGCAGCAC+AGG | + | chr4_1:41786803-41786822 | None:intergenic | 45.0% | |
| ! | TGGTTGATGTAGTACCCTGA+AGG | + | chr4_1:41786838-41786857 | None:intergenic | 45.0% |
| GGGTACTACATCAACCATTC+AGG | - | chr4_1:41786841-41786860 | Msa0548090:intron | 45.0% | |
| AAGAATGGCTTAGCTGAGTC+AGG | + | chr4_1:41786901-41786920 | None:intergenic | 45.0% | |
| AAGAAAATCCAGTGCTTCCC+AGG | + | chr4_1:41787045-41787064 | None:intergenic | 45.0% | |
| AGTTTGCAGCATAGCACTAG+TGG | - | chr4_1:41787398-41787417 | Msa0548090:intron | 45.0% | |
| ACAATCTTCATGCAGACACC+AGG | - | chr4_1:41787451-41787470 | Msa0548090:intron | 45.0% | |
| ACAAAGTTCCAGCAAGAGGA+TGG | + | chr4_1:41787589-41787608 | None:intergenic | 45.0% | |
| ATAGACGTCCATATGTCTCG+AGG | - | chr4_1:41787693-41787712 | Msa0548090:CDS | 45.0% | |
| TAGACGTCCATATGTCTCGA+GGG | - | chr4_1:41787694-41787713 | Msa0548090:CDS | 45.0% | |
| TATCAGAGGGTCAAGAAGCA+AGG | + | chr4_1:41787772-41787791 | None:intergenic | 45.0% | |
| AATTCGCCGCCGAGAAATTC+CGG | - | chr4_1:41783516-41783535 | Msa0548090:exon | 50.0% | |
| !! | GCAGAGGCGTAATTTGTTGC+AGG | - | chr4_1:41783700-41783719 | Msa0548090:intron | 50.0% |
| !! | GAGGTTGATGATCGAGCCAA+AGG | - | chr4_1:41783746-41783765 | Msa0548090:intron | 50.0% |
| TGACACTGGCACATCAACAC+TGG | - | chr4_1:41783911-41783930 | Msa0548090:intron | 50.0% | |
| TAATTGCATGTGTCGGGCAG+CGG | - | chr4_1:41783980-41783999 | Msa0548090:intron | 50.0% | |
| GAAACACAACGGACCATCCA+TGG | + | chr4_1:41784666-41784685 | None:intergenic | 50.0% | |
| ATGCTCAGTGTCTCTGAACC+TGG | - | chr4_1:41785011-41785030 | Msa0548090:intron | 50.0% | |
| !! | GAATACCGAAGGAGCACTTC+TGG | + | chr4_1:41785575-41785594 | None:intergenic | 50.0% |
| CTAGGGCAGATGAATACCGA+AGG | + | chr4_1:41785586-41785605 | None:intergenic | 50.0% | |
| CGCTCCAATCCACTCCTAAA+TGG | - | chr4_1:41785789-41785808 | Msa0548090:intron | 50.0% | |
| ! | AGTGGGCATTGTGCCATGTT+TGG | - | chr4_1:41786017-41786036 | Msa0548090:intron | 50.0% |
| CTGATAGGGTATACCTGGAG+AGG | + | chr4_1:41786305-41786324 | None:intergenic | 50.0% | |
| CAAATGAGAGCCGTATCCTC+TGG | - | chr4_1:41786699-41786718 | Msa0548090:intron | 50.0% | |
| ! | ACAGCTCTAGTCGGGTACAT+TGG | + | chr4_1:41787011-41787030 | None:intergenic | 50.0% |
| ! | CATGACGAACAGCTCTAGTC+GGG | + | chr4_1:41787019-41787038 | None:intergenic | 50.0% |
| ! | GCATGACGAACAGCTCTAGT+CGG | + | chr4_1:41787020-41787039 | None:intergenic | 50.0% |
| CAAGAGGATGGCCAATACCA+TGG | + | chr4_1:41787577-41787596 | None:intergenic | 50.0% | |
| TGGTTGGCAAGAGATGACTC+GGG | + | chr4_1:41787740-41787759 | None:intergenic | 50.0% | |
| CTGGTTGGCAAGAGATGACT+CGG | + | chr4_1:41787741-41787760 | None:intergenic | 50.0% | |
| ! | AAGAAGCAAGGCATTCGAGC+TGG | + | chr4_1:41787760-41787779 | None:intergenic | 50.0% |
| CCTCTGCGACGAATTTGCCA+AGG | + | chr4_1:41783687-41783706 | None:intergenic | 55.0% | |
| CCTTGGCAAATTCGTCGCAG+AGG | - | chr4_1:41783684-41783703 | Msa0548090:intron | 55.0% | |
| ! | CGACTTTTCCAGCTGCAGAG+AGG | + | chr4_1:41786567-41786586 | None:intergenic | 55.0% |
| AGCTGTTCGTCATGCTGCCT+GGG | - | chr4_1:41787025-41787044 | Msa0548090:intron | 55.0% | |
| ! | TACAGGTTGGGCAGTACCCT+CGG | - | chr4_1:41787518-41787537 | Msa0548090:CDS | 55.0% |
| !! | GGTATTGGCCATCCTCTTGC+TGG | - | chr4_1:41787578-41787597 | Msa0548090:intron | 55.0% |
| ! | AGCAAGGCATTCGAGCTGGT+TGG | + | chr4_1:41787756-41787775 | None:intergenic | 55.0% |
| TCTCGGCGGCGAATTAGCGT+CGG | + | chr4_1:41783511-41783530 | None:intergenic | 60.0% | |
| CACGGACACGACACTGACAC+TGG | - | chr4_1:41783897-41783916 | Msa0548090:intron | 60.0% | |
| GTCGGGTACATTGGACCACC+AGG | + | chr4_1:41787002-41787021 | None:intergenic | 60.0% | |
| GAGCTGTTCGTCATGCTGCC+TGG | - | chr4_1:41787024-41787043 | Msa0548090:intron | 60.0% | |
| ! | TCATGCTGCCTGGGAAGCAC+TGG | - | chr4_1:41787034-41787053 | Msa0548090:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 41783125 | 41788096 | 41783125 | ID=Msa0548090;Name=Msa0548090 |
| chr4_1 | mRNA | 41783125 | 41788096 | 41783125 | ID=Msa0548090-mRNA-1;Parent=Msa0548090;Name=Msa0548090-mRNA-1;_AED=0.17;_eAED=0.17;_QI=379|0.8|0.81|1|0.9|0.90|11|400|343 |
| chr4_1 | exon | 41783125 | 41783698 | 41783125 | ID=Msa0548090-mRNA-1:exon:10727;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41784136 | 41784284 | 41784136 | ID=Msa0548090-mRNA-1:exon:10726;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41784379 | 41784442 | 41784379 | ID=Msa0548090-mRNA-1:exon:10725;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41784546 | 41784646 | 41784546 | ID=Msa0548090-mRNA-1:exon:10724;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41784725 | 41784779 | 41784725 | ID=Msa0548090-mRNA-1:exon:10723;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41784911 | 41784967 | 41784911 | ID=Msa0548090-mRNA-1:exon:10722;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41785089 | 41785134 | 41785089 | ID=Msa0548090-mRNA-1:exon:10721;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41785591 | 41785673 | 41785591 | ID=Msa0548090-mRNA-1:exon:10720;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41786410 | 41786606 | 41786410 | ID=Msa0548090-mRNA-1:exon:10719;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41787514 | 41787538 | 41787514 | ID=Msa0548090-mRNA-1:exon:10718;Parent=Msa0548090-mRNA-1 |
| chr4_1 | exon | 41787637 | 41788096 | 41787637 | ID=Msa0548090-mRNA-1:exon:10717;Parent=Msa0548090-mRNA-1 |
| chr4_1 | five_prime_UTR | 41787718 | 41788096 | 41787718 | ID=Msa0548090-mRNA-1:five_prime_utr;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41787637 | 41787717 | 41787637 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41787514 | 41787538 | 41787514 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41786410 | 41786606 | 41786410 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41785591 | 41785673 | 41785591 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41785089 | 41785134 | 41785089 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41784911 | 41784967 | 41784911 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41784725 | 41784779 | 41784725 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41784546 | 41784646 | 41784546 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41784379 | 41784442 | 41784379 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41784136 | 41784284 | 41784136 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | CDS | 41783525 | 41783698 | 41783525 | ID=Msa0548090-mRNA-1:cds;Parent=Msa0548090-mRNA-1 |
| chr4_1 | three_prime_UTR | 41783125 | 41783524 | 41783125 | ID=Msa0548090-mRNA-1:three_prime_utr;Parent=Msa0548090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
