AlfalfaGEDB | Msa1018990

M. sativa cultivar zhongmu-4 / Msa1018990

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564
PFAM: PF01230.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018990	XP_013448508.1	93.137	204	12	2	1	203	1	203	6.64e-135	386

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018990	sp\|F4K1R2\|HINT3_ARATH	65.027	183	55	3	10	184	4	185	7.30e-75	226

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018990	A0A072U9P7	93.137	204	12	2	1	203	1	203	3.17e-135	386

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003300	Msa1018990	-0.819933	8.952836e-53	-8.615850e-47
Msa0011170	Msa1018990	-0.802009	6.874872e-49	-8.615850e-47
Msa0015120	Msa1018990	-0.804084	2.559859e-49	-8.615850e-47
Msa0024210	Msa1018990	0.805958	1.038153e-49	-8.615850e-47
Msa0029850	Msa1018990	-0.828098	1.085787e-54	-8.615850e-47
Msa0036140	Msa1018990	-0.868040	8.769364e-66	-8.615850e-47
Msa0050930	Msa1018990	-0.803876	2.827597e-49	-8.615850e-47
Msa0051020	Msa1018990	-0.821033	5.005769e-53	-8.615850e-47
Msa0068680	Msa1018990	-0.822503	2.287258e-53	-8.615850e-47
Msa0077180	Msa1018990	-0.806340	8.628264e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018990	MtrunA17_Chr7g0234651	93.137	204	12	2	1	203	1	203	6.11e-139	386

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018990	AT5G48545.1	65.027	183	55	3	10	184	4	185	7.43e-76	226
Msa1018990	AT5G48545.3	65.248	141	41	2	10	142	4	144	1.75e-55	173
Msa1018990	AT5G48545.2	61.600	125	40	2	10	126	4	128	1.42e-42	140
Msa1018990	AT3G56490.1	27.143	140	93	4	11	147	4	137	6.62e-11	58.5

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Find 66 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACCAAAGCGTGAAG+TGG	0.600624	7_1:-40017858	Msa1018990:five_prime_UTR
AAACTCAATAAATGAATGGT+TGG	0.458008	7_1:-40013453	Msa1018990:three_prime_UTR
AACTCAATAAATGAATGGTT+GGG	0.460989	7_1:-40013452	Msa1018990:three_prime_UTR
AAGCAATCATACGCTTTACG+GGG	0.681544	7_1:+40013793	None:intergenic
AATCTTCATTCTTACTTTCT+TGG	0.136622	7_1:+40013576	None:intergenic
AATGAAGGGTAATGAGATTT+CGG	0.297142	7_1:+40015517	None:intergenic
AATGCAATCATGAAGGCTAC+TGG	0.526214	7_1:-40014401	Msa1018990:CDS
AATGCGTGCGCTGAACACAA+GGG	0.714216	7_1:+40017903	None:intergenic
ACAAGCAATCATACGCTTTA+CGG	0.303782	7_1:+40013791	None:intergenic
ACAATTGTGATTATCATTAT+CGG	0.387322	7_1:+40017649	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGATTATCATTATCGGAAT+CGG	+	chr7_1:40013521-40013540	None:intergenic	30.0%
TTTAGTAATGACTAGTGACT+AGG	+	chr7_1:40014537-40014556	None:intergenic	30.0%
GATTTGTATCCAATATGCAT+AGG	+	chr7_1:40014648-40014667	None:intergenic	30.0%
AATAACACAACATTACACAG+TGG	+	chr7_1:40014713-40014732	None:intergenic	30.0%
AACACAGACAAAAAGGAAAT+GGG	+	chr7_1:40015066-40015085	None:intergenic	30.0%
GTATGTTGTTAGATGTTCTA+AGG	-	chr7_1:40015119-40015138	Msa1018990:intron	30.0%
CAAGTAGATTCAAAGGAAAA+AGG	-	chr7_1:40015158-40015177	Msa1018990:intron	30.0%
TGTAACACAACAAGAAAAGA+AGG	+	chr7_1:40015344-40015363	None:intergenic	30.0%
AATGAAGGGTAATGAGATTT+CGG	+	chr7_1:40015659-40015678	None:intergenic	30.0%
TGAAAATTACTTACTGTTGG+AGG	+	chr7_1:40015692-40015711	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	40013178	40018017	40013178	ID=Msa1018990;Name=Msa1018990
chr7_1	mRNA	40013178	40018017	40013178	ID=Msa1018990-mRNA-1;Parent=Msa1018990;Name=Msa1018990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=225\|1\|1\|1\|1\|1\|7\|378\|203
chr7_1	exon	40013178	40013690	40013178	ID=Msa1018990-mRNA-1:exon:7746;Parent=Msa1018990-mRNA-1
chr7_1	exon	40013780	40013833	40013780	ID=Msa1018990-mRNA-1:exon:7745;Parent=Msa1018990-mRNA-1
chr7_1	exon	40013943	40013998	40013943	ID=Msa1018990-mRNA-1:exon:7744;Parent=Msa1018990-mRNA-1
chr7_1	exon	40014396	40014462	40014396	ID=Msa1018990-mRNA-1:exon:7743;Parent=Msa1018990-mRNA-1
chr7_1	exon	40015498	40015555	40015498	ID=Msa1018990-mRNA-1:exon:7742;Parent=Msa1018990-mRNA-1
chr7_1	exon	40016515	40016570	40016515	ID=Msa1018990-mRNA-1:exon:7741;Parent=Msa1018990-mRNA-1
chr7_1	exon	40017607	40018017	40017607	ID=Msa1018990-mRNA-1:exon:7740;Parent=Msa1018990-mRNA-1
chr7_1	five_prime_UTR	40017793	40018017	40017793	ID=Msa1018990-mRNA-1:five_prime_utr;Parent=Msa1018990-mRNA-1
chr7_1	CDS	40017607	40017792	40017607	ID=Msa1018990-mRNA-1:cds;Parent=Msa1018990-mRNA-1
chr7_1	CDS	40016515	40016570	40016515	ID=Msa1018990-mRNA-1:cds;Parent=Msa1018990-mRNA-1
chr7_1	CDS	40015498	40015555	40015498	ID=Msa1018990-mRNA-1:cds;Parent=Msa1018990-mRNA-1
chr7_1	CDS	40014396	40014462	40014396	ID=Msa1018990-mRNA-1:cds;Parent=Msa1018990-mRNA-1
chr7_1	CDS	40013943	40013998	40013943	ID=Msa1018990-mRNA-1:cds;Parent=Msa1018990-mRNA-1
chr7_1	CDS	40013780	40013833	40013780	ID=Msa1018990-mRNA-1:cds;Parent=Msa1018990-mRNA-1
chr7_1	CDS	40013556	40013690	40013556	ID=Msa1018990-mRNA-1:cds;Parent=Msa1018990-mRNA-1
chr7_1	three_prime_UTR	40013178	40013555	40013178	ID=Msa1018990-mRNA-1:three_prime_utr;Parent=Msa1018990-mRNA-1

Gene Sequence

>Msa1018990

ATGTCCATTGAAGAAGAAGCAACGAGGAGGAGAGTTACCGTTTTGTCCTCCCATCTCAACCCGACCCGTTTCGCTTATTCGGATCCACTCTCCGCTTCGTTTTGTTCAGCTGCTTCCGATTCCGATAATGATAATCACAATTGTGTCTTTTGCAACATTATTCGTGGTCAATCTCCTGCCGTCAAGCTTTATGAAGATGACACGTGCCTATGCATATTGGATACAAATCCGTTGAGTCATGGGCACTCTCTCATTATCCCGAAATCTCATTACCCTTCATTGGATGCTACTCCTCCAACAGTGGTAGCTGCAATGAGTTCCAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAATTCATTCAACGTGTTAATTAATAACGGAGCAGCTGCTGGTCAAGTAATATTTCATACTCATATGCACATAATTCCCCGTAAAGCGTATGATTGCTTGTGGGCTTCTGAGAGTTTGCTAAGGCGTCCACTTAATTTAGACGATGAGAAAGTTTCTCAACTCGCTGCATGTATTCAAGAACAGTTGTCGGTATCAGACATTTGCCAAGAAAGTAAGAATGAAGATTTTTGTCCAAGTAAAAGTTAA

Protein sequence

>Msa1018990

MSIEEEATRRRVTVLSSHLNPTRFAYSDPLSASFCSAASDSDNDNHNCVFCNIIRGQSPAVKLYEDDTCLCILDTNPLSHGHSLIIPKSHYPSLDATPPTVVAAMSSKVPFISNAIMKATGCNSFNVLINNGAAAGQVIFHTHMHIIPRKAYDCLWASESLLRRPLNLDDEKVSQLAACIQEQLSVSDICQESKNEDFCPSKS*