AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603210 MtrunA17_Chr6g0487521 82.576 132 12 1 120 240 89 220 2.16e-59 187
Msa0603210 MtrunA17_Chr8g0389481 71.212 132 25 3 120 240 93 222 3.57e-43 145
Msa0603210 MtrunA17_Chr8g0389471 66.412 131 34 1 120 240 91 221 7.90e-41 139
Msa0603210 MtrunA17_Chr7g0255781 93.056 72 5 0 47 118 169 240 8.31e-37 135
Msa0603210 MtrunA17_Chr5g0441311 58.333 72 30 0 47 118 179 250 2.93e-19 86.3
Msa0603210 MtrunA17_Chr3g0093711 55.556 72 32 0 47 118 164 235 1.47e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603210 AT2G19830.1 70.455 132 22 3 120 240 69 194 3.34e-50 163
Msa0603210 AT2G19830.2 70.455 132 22 3 120 240 88 213 6.88e-50 162
Msa0603210 AT4G29160.2 73.684 133 23 2 120 240 60 192 2.26e-49 160
Msa0603210 AT4G29160.1 73.684 133 23 2 120 240 87 219 5.46e-49 160
Msa0603210 AT4G29160.3 73.684 133 23 2 120 240 87 219 5.46e-49 160
Msa0603210 AT3G56480.1 67.568 74 22 1 47 118 168 241 9.09e-25 102
Msa0603210 AT2G40820.5 67.568 74 22 1 47 118 61 134 1.54e-23 97.8
Msa0603210 AT2G40820.3 67.568 74 22 1 47 118 183 256 4.18e-23 97.8
Msa0603210 AT2G40820.4 67.568 74 22 1 47 118 196 269 4.24e-23 97.8
Msa0603210 AT2G40820.2 67.568 74 22 1 47 118 171 244 4.54e-23 97.4
Msa0603210 AT2G40820.1 67.568 74 22 1 47 118 171 244 4.54e-23 97.4
Msa0603210 AT2G26770.2 59.722 72 29 0 47 118 168 239 3.21e-19 86.7
Msa0603210 AT2G26770.3 59.722 72 29 0 47 118 168 239 3.21e-19 86.7
Msa0603210 AT2G26770.1 59.722 72 29 0 47 118 168 239 3.21e-19 86.7

Find 73 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGGTTTATTTCAGAAAT+TGG 0.169000 4_2:-47425365 Msa0603210:five_prime_UTR
TCCTCAGGAGTCGGCTTTGC+AGG 0.229972 4_2:+47418534 None:intergenic
AGAGCAGTGGTGCTGGGAAT+TGG 0.301411 4_2:-47422606 Msa0603210:CDS
TGCTCTAGCACTTTCGATTT+CGG 0.302558 4_2:+47422623 None:intergenic
GAGCAGTGGTGCTGGGAATT+GGG 0.318997 4_2:-47422605 Msa0603210:CDS
TCCACAGTGCATGTCTCAGC+TGG 0.341162 4_2:-47418579 Msa0603210:CDS
AGGCTTCTGAAGATGCTAAA+AGG 0.361461 4_2:-47422677 Msa0603210:CDS
AGATGAATTGGCAGCTCTGC+AGG 0.394946 4_2:-47418511 Msa0603210:CDS
GAGGGAAGAAATGAGCAAAA+TGG 0.401804 4_2:+47425416 None:intergenic
ATTAAGCAATGTACCTTACT+TGG 0.401978 4_2:+47422257 None:intergenic
ATGAGCAAAATGGAGCTTGC+TGG 0.408857 4_2:+47425426 None:intergenic
GACTCCTGAGGAAGATGAAT+TGG 0.412289 4_2:-47418523 Msa0603210:CDS
AAATAAGCAGCTGCACCAAT+TGG 0.420089 4_2:+47419118 None:intergenic
TTTGCTCATTTCTTCCCTCT+AGG 0.427125 4_2:-47425412 Msa0603210:five_prime_UTR
GAACGAGAGAAGGGAGGGAG+AGG 0.446128 4_2:-47425535 Msa0603210:five_prime_UTR
GAACGAGAGAAGGGAGGGAG+AGG 0.446128 4_2:-47425578 Msa0603210:five_prime_UTR
AAGTGCTAGAGCAGTGGTGC+TGG 0.451158 4_2:-47422613 Msa0603210:CDS
TTGCTCATTTCTTCCCTCTA+GGG 0.452254 4_2:-47425411 Msa0603210:five_prime_UTR
TAATAGATGATAATGTTAGA+AGG 0.453601 4_2:-47419403 Msa0603210:intron
ACAGTAGATGAGTTAAGAAC+AGG 0.453872 4_2:-47419361 Msa0603210:CDS
CAGAATTTGAGGGAGGGGAG+TGG 0.461437 4_2:-47423196 Msa0603210:intron
TACACAAGCTTCTAAACCAC+AGG 0.464474 4_2:-47422556 Msa0603210:intron
GGCAGCTCTGCAGGCTGAGA+TGG 0.469864 4_2:-47418502 Msa0603210:CDS
AATTTCCCTTCTTCCTCCAT+CGG 0.481569 4_2:+47425496 None:intergenic
TTTGGTTCAATATGGTAATG+AGG 0.482030 4_2:-47425305 Msa0603210:five_prime_UTR
GGAGTCGGCTTTGCAGGAAC+AGG 0.488105 4_2:+47418540 None:intergenic
AAGAAGCCGATGGAGGAAGA+AGG 0.488234 4_2:-47425502 Msa0603210:five_prime_UTR
TTTGCAGGAACAGGACGTGC+AGG 0.493724 4_2:+47418549 None:intergenic
AAACAGAACGAGAGAAGGGA+GGG 0.502519 4_2:-47425540 Msa0603210:five_prime_UTR
AAACAGAACGAGAGAAGGGA+GGG 0.502519 4_2:-47425583 Msa0603210:five_prime_UTR
TTCTGAAGATGCTAAAAGGT+TGG 0.504212 4_2:-47422673 Msa0603210:CDS
TTAGGTGGTATAGGTACAAA+GGG 0.506162 4_2:-47422861 Msa0603210:intron
CTGTCAGGATGTGGATGGAC+TGG 0.508897 4_2:-47422324 Msa0603210:intron
GAAGCATTGTCAGCTCCAAT+TGG 0.513583 4_2:-47419133 Msa0603210:CDS
AGAATTGGAGAATGCTGAGT+TGG 0.518601 4_2:-47418640 Msa0603210:intron
CTGTTCATTTATCTCGTCCA+TGG 0.520922 4_2:+47419180 None:intergenic
AGCAGTGGTGCTGGGAATTG+GGG 0.521566 4_2:-47422604 Msa0603210:CDS
ATTGCTGCATCAGCCAAGTA+AGG 0.523393 4_2:-47422270 Msa0603210:intron
TCTTACTGTCAGGATGTGGA+TGG 0.524962 4_2:-47422329 Msa0603210:intron
GCTGCCAATTCATCTTCCTC+AGG 0.526016 4_2:+47418519 None:intergenic
TTTAGGTGGTATAGGTACAA+AGG 0.530695 4_2:-47422862 Msa0603210:intron
AACAGGAGCAACTACTATGA+AGG 0.534991 4_2:-47419344 Msa0603210:CDS
CCACAGTGCATGTCTCAGCT+GGG 0.540725 4_2:-47418578 Msa0603210:CDS
TGTGGATGGACTGGTGGAAG+AGG 0.543368 4_2:-47422315 Msa0603210:CDS
AATTCATCTTCCTCAGGAGT+CGG 0.548839 4_2:+47418525 None:intergenic
CTCATCTACTGTTTCCGTGG+TGG 0.551419 4_2:+47419372 None:intergenic
TAACTCATCTACTGTTTCCG+TGG 0.551559 4_2:+47419369 None:intergenic
GAGAAAAGCTGCGCCCTAGA+GGG 0.557343 4_2:+47425398 None:intergenic
CAATATGGTAATGAGGAACA+AGG 0.557967 4_2:-47425298 Msa0603210:five_prime_UTR
GTCTAAACAATCTGAACCAA+AGG 0.568231 4_2:-47422791 Msa0603210:intron
AGTGCTAGAGCAGTGGTGCT+GGG 0.572493 4_2:-47422612 Msa0603210:CDS
AAAACAGAACGAGAGAAGGG+AGG 0.577096 4_2:-47425541 Msa0603210:five_prime_UTR
AAAACAGAACGAGAGAAGGG+AGG 0.577096 4_2:-47425584 Msa0603210:five_prime_UTR
AGAAGCCGATGGAGGAAGAA+GGG 0.579655 4_2:-47425501 Msa0603210:five_prime_UTR
AGGTACAAAGGGAATGATGA+TGG 0.582511 4_2:-47422850 Msa0603210:CDS
AGAAGAAGAAAAGAAGCCGA+TGG 0.589158 4_2:-47425512 Msa0603210:five_prime_UTR
TGAGAAGGAGAAATTTGAAG+AGG 0.591853 4_2:-47423152 Msa0603210:intron
GATGGTACTGATCAAGTTAG+TGG 0.592941 4_2:-47422832 Msa0603210:CDS
TCCTGCAAAGCCGACTCCTG+AGG 0.597589 4_2:-47418535 Msa0603210:CDS
AAATCATGTGCAAAATGAGA+AGG 0.599565 4_2:-47423167 Msa0603210:CDS
AGGGAAATTACTAACATGCA+AGG 0.607987 4_2:-47425482 Msa0603210:five_prime_UTR
TCAGGATGTGGATGGACTGG+TGG 0.623988 4_2:-47422321 Msa0603210:intron
AGAGAAAAGCTGCGCCCTAG+AGG 0.628614 4_2:+47425397 None:intergenic
AGTGGTGCTGGGAATTGGGG+AGG 0.632259 4_2:-47422601 Msa0603210:CDS
TGATGATGTCGACAAGACCA+TGG 0.653403 4_2:-47419197 Msa0603210:CDS
ACTGGTGGAAGAGGTTCAAG+AGG 0.653599 4_2:-47422306 Msa0603210:CDS
AGAAGAAAAGAAGCCGATGG+AGG 0.664009 4_2:-47425509 Msa0603210:five_prime_UTR
AATCGAAAGTGCTAGAGCAG+TGG 0.666858 4_2:-47422619 Msa0603210:CDS
AATATGGTAATGAGGAACAA+GGG 0.673181 4_2:-47425297 Msa0603210:five_prime_UTR
GAAGCGTGAGCTGTAAATGT+TGG 0.674618 4_2:+47418600 None:intergenic
CAGTGCATGTCTCAGCTGGG+AGG 0.694914 4_2:-47418575 Msa0603210:CDS
CCCAGCTGAGACATGCACTG+TGG 0.698625 4_2:+47418578 None:intergenic
AGAAGGTGCTAAAGCCACCA+CGG 0.700426 4_2:-47419386 Msa0603210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATGTAAAAAATAAAT+GGG - chr4_2:47419341-47419360 Msa0603210:CDS 10.0%
!! AAATAAAAAATAAAAACTTG+AGG - chr4_2:47420350-47420369 Msa0603210:intron 10.0%
!! AATAAAAAATAAAAACTTGA+GGG - chr4_2:47420351-47420370 Msa0603210:intron 10.0%
!! AAATATGTTAATTTCATATT+TGG - chr4_2:47420568-47420587 Msa0603210:intron 10.0%
!!! AAATTATTTTTTGAACAAAA+TGG + chr4_2:47424303-47424322 None:intergenic 10.0%
!! GAATTGATGTAAAAAATAAA+TGG - chr4_2:47419340-47419359 Msa0603210:CDS 15.0%
!!! GATGTATCATTTTTTTAAAA+TGG - chr4_2:47420620-47420639 Msa0603210:intron 15.0%
!!! AATATTGGGAATTTATTTTA+AGG + chr4_2:47420726-47420745 None:intergenic 15.0%
!!! TTATTTTCTGTTACTTTAAA+AGG - chr4_2:47421000-47421019 Msa0603210:intron 15.0%
!! TTTCATTTATATATTCACAT+TGG - chr4_2:47421914-47421933 Msa0603210:intron 15.0%
!!! ATTTTTTTACTTGATGATTT+TGG - chr4_2:47423926-47423945 Msa0603210:intron 15.0%
!!! CTTTTCATTAAATTTTGTTT+TGG - chr4_2:47425211-47425230 Msa0603210:intron 15.0%
!! TTATTATTTCAAAATAACCT+TGG + chr4_2:47425249-47425268 None:intergenic 15.0%
!! TTGAAATAATAACATTAAAC+AGG - chr4_2:47425257-47425276 Msa0603210:intron 15.0%
!! TGAAATAATAACATTAAACA+GGG - chr4_2:47425258-47425277 Msa0603210:intron 15.0%
!!! TTGATGTTGAATTATTTTCT+GGG - chr4_2:47418883-47418902 Msa0603210:intron 20.0%
!!! ATGTAAAAAATAAATGGGTT+GGG - chr4_2:47419346-47419365 Msa0603210:CDS 20.0%
!! ATCAAAACAACTTATATTCA+TGG + chr4_2:47420042-47420061 None:intergenic 20.0%
!!! ATATAAGTTGTTTTGAAGTT+TGG - chr4_2:47420123-47420142 Msa0603210:intron 20.0%
!! TTTCAACTTAATGAATTTAG+TGG + chr4_2:47420288-47420307 None:intergenic 20.0%
!!! CAAATAGGTATTTTCTATAA+AGG - chr4_2:47420435-47420454 Msa0603210:intron 20.0%
!! CATCATAAAAGCTAAAATAT+AGG + chr4_2:47420604-47420623 None:intergenic 20.0%
!!! TAAAATGGTTTTTGAAGAAT+TGG - chr4_2:47420635-47420654 Msa0603210:intron 20.0%
!!! GTTTCTATAGTTATCTTTTT+TGG - chr4_2:47420867-47420886 Msa0603210:intron 20.0%
!!! ATTTCTTTTTTCAGAATTTG+AGG - chr4_2:47420895-47420914 Msa0603210:intron 20.0%
!!! TTTCTTTTTTCAGAATTTGA+GGG - chr4_2:47420896-47420915 Msa0603210:intron 20.0%
!! TATAAACTTAAAAATCAGGA+GGG + chr4_2:47421137-47421156 None:intergenic 20.0%
!!! TTAATTTTTGCAACTTGATA+TGG - chr4_2:47421178-47421197 Msa0603210:intron 20.0%
!! TGAATATATAAATGAAAGAG+AGG + chr4_2:47421911-47421930 None:intergenic 20.0%
!!! TCTTTTATATCTTCATTACT+TGG - chr4_2:47422017-47422036 Msa0603210:intron 20.0%
!! GAACAAAAATATAGATCATA+TGG + chr4_2:47422521-47422540 None:intergenic 20.0%
!! ATATATGTTGAACTTTATGT+GGG - chr4_2:47422679-47422698 Msa0603210:intron 20.0%
!!! ATTTGTCTTATTTTTGTGTT+TGG - chr4_2:47423058-47423077 Msa0603210:intron 20.0%
!! AAAATAACCAACGATATTAT+TGG + chr4_2:47423228-47423247 None:intergenic 20.0%
!!! GTTATGGTAATTTGATTTTA+GGG - chr4_2:47423269-47423288 Msa0603210:intron 20.0%
!! TAAAATTGATACAATGTTGT+TGG - chr4_2:47423475-47423494 Msa0603210:intron 20.0%
!! TTGTTTCACAAATTAAAAAC+AGG + chr4_2:47423614-47423633 None:intergenic 20.0%
!! AATTTAAATCACCTGTTATT+GGG + chr4_2:47424089-47424108 None:intergenic 20.0%
!! TAATTTAAATCACCTGTTAT+TGG + chr4_2:47424090-47424109 None:intergenic 20.0%
!!! TAATAGATGATAATGTTAGA+AGG - chr4_2:47424699-47424718 Msa0603210:intron 20.0%
!! GTGATATATTTAATTGAGTT+TGG - chr4_2:47424858-47424877 Msa0603210:intron 20.0%
!!! TTTTTGCTTATAATTAAGTC+TGG + chr4_2:47425096-47425115 None:intergenic 20.0%
!! CTTGATGTTGAATTATTTTC+TGG - chr4_2:47418882-47418901 Msa0603210:intron 25.0%
! TGTTCATCACAACAAATATT+AGG - chr4_2:47418973-47418992 Msa0603210:intron 25.0%
!!! TTTTGTGATTTTGATTGTGT+AGG - chr4_2:47419091-47419110 Msa0603210:intron 25.0%
! ATTAGTGTAAGTGTAATCAT+GGG - chr4_2:47419140-47419159 Msa0603210:CDS 25.0%
! GATGTAAAAAATAAATGGGT+TGG - chr4_2:47419345-47419364 Msa0603210:CDS 25.0%
!!! TGAATTGATGTTTTAGTGTT+TGG - chr4_2:47419497-47419516 Msa0603210:intron 25.0%
!!! GAATTGATGTTTTAGTGTTT+GGG - chr4_2:47419498-47419517 Msa0603210:intron 25.0%
! TGGTAACTTAAATATAGCAT+TGG + chr4_2:47419631-47419650 None:intergenic 25.0%
!! GTGAACTGATAAACTATTTT+GGG - chr4_2:47419663-47419682 Msa0603210:intron 25.0%
! GAAGTGGATAAAATGTAATT+AGG - chr4_2:47419767-47419786 Msa0603210:intron 25.0%
!!! TAGGTATTTTTAAGTTGCTA+AGG - chr4_2:47420089-47420108 Msa0603210:intron 25.0%
! ATCTTAATATACATCATGCT+AGG + chr4_2:47420209-47420228 None:intergenic 25.0%
! AAAAATAAAAACTTGAGGGT+AGG - chr4_2:47420355-47420374 Msa0603210:intron 25.0%
! ATGCAAGTAGCAAAATTTAT+AGG - chr4_2:47420466-47420485 Msa0603210:intron 25.0%
! TGCAAGTAGCAAAATTTATA+GGG - chr4_2:47420467-47420486 Msa0603210:intron 25.0%
! CATAGAAAGACTTTCTTTAT+TGG + chr4_2:47420764-47420783 None:intergenic 25.0%
! ACATAATTGAATTCACACAA+GGG + chr4_2:47420806-47420825 None:intergenic 25.0%
! TTCAATTATGTCCTTTGATT+TGG - chr4_2:47420815-47420834 Msa0603210:intron 25.0%
!!! CTATAGTTATCTTTTTTGGT+AGG - chr4_2:47420871-47420890 Msa0603210:intron 25.0%
! ATTTGAAGAGGTAATTCTTA+TGG - chr4_2:47420962-47420981 Msa0603210:intron 25.0%
! CTATAAACTTAAAAATCAGG+AGG + chr4_2:47421138-47421157 None:intergenic 25.0%
! CAGCTATAAACTTAAAAATC+AGG + chr4_2:47421141-47421160 None:intergenic 25.0%
!! CAAGCTTAAGTTGTTAATTT+GGG - chr4_2:47421201-47421220 Msa0603210:intron 25.0%
!!! GTTACTTTGTATTGTGTTTT+AGG - chr4_2:47421223-47421242 Msa0603210:intron 25.0%
!!! TGATTCCATTTTTGTTCTAT+AGG - chr4_2:47421405-47421424 Msa0603210:intron 25.0%
! TTGTAGATAACAGTAACAAA+TGG + chr4_2:47421882-47421901 None:intergenic 25.0%
! CTAGCAGTGAAAAATAAATA+TGG - chr4_2:47422088-47422107 Msa0603210:intron 25.0%
! ATCATCATCAAAACTGTTAA+TGG - chr4_2:47422179-47422198 Msa0603210:intron 25.0%
!!! GATCTATATTTTTGTTCTTC+CGG - chr4_2:47422524-47422543 Msa0603210:intron 25.0%
! CATATATGTTGAACTTTATG+TGG - chr4_2:47422678-47422697 Msa0603210:CDS 25.0%
! ATGTAAATATTACTGTTTGC+AGG - chr4_2:47422780-47422799 Msa0603210:intron 25.0%
! TTTATGCAGTTATCTATTCA+AGG - chr4_2:47422824-47422843 Msa0603210:CDS 25.0%
!!! AAATGCAAATTGTGTTGTTT+TGG - chr4_2:47423010-47423029 Msa0603210:intron 25.0%
! GTATTCACTCTTAATATCAT+TGG + chr4_2:47423172-47423191 None:intergenic 25.0%
! TGATATTAAGAGTGAATACT+TGG - chr4_2:47423173-47423192 Msa0603210:CDS 25.0%
! AAGAAAACCAATAATATCGT+TGG - chr4_2:47423218-47423237 Msa0603210:intron 25.0%
!!! ATATCGTTGGTTATTTTTTG+AGG - chr4_2:47423231-47423250 Msa0603210:intron 25.0%
!!! TATCGTTGGTTATTTTTTGA+GGG - chr4_2:47423232-47423251 Msa0603210:intron 25.0%
! TTTGAGGGAAATAATATTGT+TGG - chr4_2:47423247-47423266 Msa0603210:intron 25.0%
!! GGAAATAATATTGTTGGTTA+TGG - chr4_2:47423253-47423272 Msa0603210:intron 25.0%
!!! GGTTATGGTAATTTGATTTT+AGG - chr4_2:47423268-47423287 Msa0603210:intron 25.0%
!! TTTTACGTGTCTTCAAATTT+AGG - chr4_2:47423360-47423379 Msa0603210:intron 25.0%
! AAATCAAAACAGAAGTGATA+AGG + chr4_2:47423531-47423550 None:intergenic 25.0%
! TGTGAAACAATTCATAGATT+AGG - chr4_2:47423624-47423643 Msa0603210:intron 25.0%
! TATTCACCAGATTAATATGT+GGG - chr4_2:47423772-47423791 Msa0603210:intron 25.0%
! ATCTATTCCCTTAATTAATG+AGG - chr4_2:47423829-47423848 Msa0603210:intron 25.0%
!!! CATTTTGATTAAAAGCTGAA+AGG + chr4_2:47424047-47424066 None:intergenic 25.0%
! GTATTACTTACTTTAGACAA+TGG - chr4_2:47424631-47424650 Msa0603210:intron 25.0%
!! ATCAAATATCCTGTTTTCAA+CGG + chr4_2:47425051-47425070 None:intergenic 25.0%
TTGGGGTTTATTTCAGAAAT+TGG - chr4_2:47418737-47418756 Msa0603210:intron 30.0%
!!! TTGTTTTCTGGTGTTGATTT+TGG - chr4_2:47418779-47418798 Msa0603210:intron 30.0%
!!! GTGTTGATTTTGGTTCAATA+TGG - chr4_2:47418789-47418808 Msa0603210:intron 30.0%
! TTTGGTTCAATATGGTAATG+AGG - chr4_2:47418797-47418816 Msa0603210:intron 30.0%
! AATATGGTAATGAGGAACAA+GGG - chr4_2:47418805-47418824 Msa0603210:intron 30.0%
ACTTGCTTGTGATTTATGTT+TGG - chr4_2:47418923-47418942 Msa0603210:intron 30.0%
CTTGCTTGTGATTTATGTTT+GGG - chr4_2:47418924-47418943 Msa0603210:intron 30.0%
TTGCTTGTGATTTATGTTTG+GGG - chr4_2:47418925-47418944 Msa0603210:intron 30.0%
CATTAGTGTAAGTGTAATCA+TGG - chr4_2:47419139-47419158 Msa0603210:CDS 30.0%
GTAATCATGGGATCTTAATA+CGG - chr4_2:47419152-47419171 Msa0603210:CDS 30.0%
CTACTTTCTAAACAATCTGA+TGG + chr4_2:47419452-47419471 None:intergenic 30.0%
! AAGTAGCAATTAAGTTGTTG+TGG - chr4_2:47419466-47419485 Msa0603210:intron 30.0%
! AGTAGCAATTAAGTTGTTGT+GGG - chr4_2:47419467-47419486 Msa0603210:intron 30.0%
!! CTGTCAATTAAGTTGTTTTG+CGG - chr4_2:47419550-47419569 Msa0603210:intron 30.0%
TAAGTTACCATATGAGTAGT+TGG - chr4_2:47419641-47419660 Msa0603210:intron 30.0%
! GGTGAACTGATAAACTATTT+TGG - chr4_2:47419662-47419681 Msa0603210:intron 30.0%
AAGTTGACAGAAAGTGATTA+TGG - chr4_2:47419726-47419745 Msa0603210:intron 30.0%
AAAGTGATTATGGAGGATTA+GGG - chr4_2:47419736-47419755 Msa0603210:intron 30.0%
!!! TCAAGTGTTTTTTGATGCTA+TGG - chr4_2:47419905-47419924 Msa0603210:intron 30.0%
! ATGGTTAGCTAACAAAATTC+CGG - chr4_2:47419924-47419943 Msa0603210:intron 30.0%
!!! TGTTTTGATGTGCTAAAGTT+TGG - chr4_2:47420053-47420072 Msa0603210:intron 30.0%
GTTTGGTATCACTTAACAAT+AGG - chr4_2:47420070-47420089 Msa0603210:intron 30.0%
CACATCATATTCATTGCTTT+AGG + chr4_2:47420263-47420282 None:intergenic 30.0%
GTAGGATATGAAACTTTGAA+CGG - chr4_2:47420373-47420392 Msa0603210:intron 30.0%
TAGGATATGAAACTTTGAAC+GGG - chr4_2:47420374-47420393 Msa0603210:intron 30.0%
CATATTGCCGTAACAAAAAT+AGG - chr4_2:47420536-47420555 Msa0603210:intron 30.0%
!!! TGTCAAGCCTATTTTTGTTA+CGG + chr4_2:47420546-47420565 None:intergenic 30.0%
!!! TTTATTTTAAGGCGAGCAAT+TGG + chr4_2:47420715-47420734 None:intergenic 30.0%
CATGTGTTGGAGATAATATT+GGG + chr4_2:47420740-47420759 None:intergenic 30.0%
TCATGTGTTGGAGATAATAT+TGG + chr4_2:47420741-47420760 None:intergenic 30.0%
TTTCTTTATTGGTCATGTGT+TGG + chr4_2:47420753-47420772 None:intergenic 30.0%
GACATAATTGAATTCACACA+AGG + chr4_2:47420807-47420826 None:intergenic 30.0%
!! AATTATGTCCTTTGATTTGG+TGG - chr4_2:47420818-47420837 Msa0603210:intron 30.0%
AATGAAATCCACCAAATCAA+AGG + chr4_2:47420829-47420848 None:intergenic 30.0%
!! ATTTGGTGGATTTCATTTCT+TGG - chr4_2:47420832-47420851 Msa0603210:intron 30.0%
!!! TTTTTTCAGAATTTGAGGGA+GGG - chr4_2:47420900-47420919 Msa0603210:intron 30.0%
AAATCATGTGCAAAATGAGA+AGG - chr4_2:47420935-47420954 Msa0603210:intron 30.0%
TAGAGTGAATAGATCCATTA+AGG - chr4_2:47421080-47421099 Msa0603210:intron 30.0%
! GCAAGCTTAAGTTGTTAATT+TGG - chr4_2:47421200-47421219 Msa0603210:intron 30.0%
!! ACTTTGTATTGTGTTTTAGG+TGG - chr4_2:47421226-47421245 Msa0603210:intron 30.0%
!! TATTGTGTTTTAGGTGGTAT+AGG - chr4_2:47421232-47421251 Msa0603210:intron 30.0%
! AGTTATTGTTGTAGCACTTT+TGG - chr4_2:47421369-47421388 Msa0603210:intron 30.0%
AGAAGCCTATAGAACAAAAA+TGG + chr4_2:47421413-47421432 None:intergenic 30.0%
AGTTAACGTAACATAATAGC+TGG + chr4_2:47421729-47421748 None:intergenic 30.0%
! TTTTGTGTTTTCTTACTGTC+AGG - chr4_2:47421763-47421782 Msa0603210:intron 30.0%
ATTAAGCAATGTACCTTACT+TGG + chr4_2:47421848-47421867 None:intergenic 30.0%
TCATTACTTGGACTATGAAT+AGG - chr4_2:47422029-47422048 Msa0603210:intron 30.0%
CATTACTTGGACTATGAATA+GGG - chr4_2:47422030-47422049 Msa0603210:intron 30.0%
TTGATTATTGTGTCTTTGTC+TGG - chr4_2:47422289-47422308 Msa0603210:CDS 30.0%
TAACAGCAAGAATTAGACAT+TGG + chr4_2:47422413-47422432 None:intergenic 30.0%
!! ATATTTTTGTTCTTCCGGAA+AGG - chr4_2:47422529-47422548 Msa0603210:intron 30.0%
TCTAGCATTATGCATTGTTT+GGG - chr4_2:47422565-47422584 Msa0603210:CDS 30.0%
! TTTTCTTGAAGCACAAAACT+GGG + chr4_2:47422599-47422618 None:intergenic 30.0%
! ATTTTCTTGAAGCACAAAAC+TGG + chr4_2:47422600-47422619 None:intergenic 30.0%
CTCTATACCATCATTTAATC+AGG - chr4_2:47422733-47422752 Msa0603210:intron 30.0%
TACCATCATTTAATCAGGTT+TGG - chr4_2:47422738-47422757 Msa0603210:intron 30.0%
TTCCAAACCTGATTAAATGA+TGG + chr4_2:47422743-47422762 None:intergenic 30.0%
! AGCCAATACAATTTTCTTCT+AGG - chr4_2:47422899-47422918 Msa0603210:intron 30.0%
GTCCTAGAAGAAAATTGTAT+TGG + chr4_2:47422904-47422923 None:intergenic 30.0%
!! TTCTTCTAGGACAATGAAAT+TGG - chr4_2:47422912-47422931 Msa0603210:intron 30.0%
!! ACAATGAAATTGGTAGTGAA+TGG - chr4_2:47422922-47422941 Msa0603210:intron 30.0%
!!! ATTGTGTTGTTTTGGTCATT+TGG - chr4_2:47423018-47423037 Msa0603210:intron 30.0%
ACTATGTATAAACCCAAATG+TGG - chr4_2:47423582-47423601 Msa0603210:intron 30.0%
TTTGTGAAAAGAATTGTCCA+TGG - chr4_2:47423660-47423679 Msa0603210:intron 30.0%
GTATTCACCAGATTAATATG+TGG - chr4_2:47423771-47423790 Msa0603210:intron 30.0%
ATTCACCAGATTAATATGTG+GGG - chr4_2:47423773-47423792 Msa0603210:intron 30.0%
TATTCCCTTAATTAATGAGG+CGG - chr4_2:47423832-47423851 Msa0603210:intron 30.0%
!! AGTTTAAGTTGCTCTAAATG+GGG + chr4_2:47423895-47423914 None:intergenic 30.0%
!! GAGTTTAAGTTGCTCTAAAT+GGG + chr4_2:47423896-47423915 None:intergenic 30.0%
!! AGAGTTTAAGTTGCTCTAAA+TGG + chr4_2:47423897-47423916 None:intergenic 30.0%
TTTGGATGTACCAATTGATT+AGG - chr4_2:47423944-47423963 Msa0603210:intron 30.0%
ATATAGAGAGCCTAATCAAT+TGG + chr4_2:47423957-47423976 None:intergenic 30.0%
ATTAAAAGCTGAAAGGATAG+CGG + chr4_2:47424040-47424059 None:intergenic 30.0%
TTTATAACATAAGCTGCAGT+TGG - chr4_2:47424360-47424379 Msa0603210:intron 30.0%
CAAGAAAGAAAGAATATACC+AGG - chr4_2:47424414-47424433 Msa0603210:intron 30.0%
TAGAACCACTCTGATTAATA+GGG + chr4_2:47424448-47424467 None:intergenic 30.0%
ATAGAACCACTCTGATTAAT+AGG + chr4_2:47424449-47424468 None:intergenic 30.0%
! AGTTGAGAAATGTACTCTTT+TGG - chr4_2:47424473-47424492 Msa0603210:intron 30.0%
! TTTTTCCTTAATACCCAACT+TGG + chr4_2:47424595-47424614 None:intergenic 30.0%
ACTTACTTTAGACAATGGTT+TGG - chr4_2:47424636-47424655 Msa0603210:intron 30.0%
! TAATCTTCTTTTTCCCCTTA+TGG - chr4_2:47424664-47424683 Msa0603210:intron 30.0%
TACAAAAATCACCACCATAA+GGG + chr4_2:47424681-47424700 None:intergenic 30.0%
TTACAAAAATCACCACCATA+AGG + chr4_2:47424682-47424701 None:intergenic 30.0%
!!! TTGGTTCTGTTTCTTTTTAC+AGG - chr4_2:47424877-47424896 Msa0603210:intron 30.0%
! TACGTCAAAAAAGCATAATG+TGG + chr4_2:47425154-47425173 None:intergenic 30.0%
! TTTGGAACATATTTCATCCA+AGG - chr4_2:47425229-47425248 Msa0603210:intron 30.0%
! ATTTTGTCTATATTGAGTCC+AGG - chr4_2:47425294-47425313 Msa0603210:five_prime_UTR 30.0%
! TTTTGTCTATATTGAGTCCA+GGG - chr4_2:47425295-47425314 Msa0603210:five_prime_UTR 30.0%
TTTCAGATTGAACACATGTT+TGG + chr4_2:47425355-47425374 None:intergenic 30.0%
! ATGTGTTCAATCTGAAATGT+TGG - chr4_2:47425358-47425377 Msa0603210:five_prime_UTR 30.0%
AATAAATTCAGAATGCCACA+TGG + chr4_2:47425408-47425427 None:intergenic 30.0%
AAGAAAAACAGAACGAGAGA+AGG - chr4_2:47418514-47418533 Msa0603210:CDS 35.0%
AGAAAAACAGAACGAGAGAA+GGG - chr4_2:47418515-47418534 Msa0603210:CDS 35.0%
AGAAAAACAGAACGAGAGAA+GGG - chr4_2:47418515-47418534 Msa0603210:CDS 35.0%
AGGGAAATTACTAACATGCA+AGG - chr4_2:47418620-47418639 Msa0603210:CDS 35.0%
! CTTTTCTCTATTCTGCTCTT+GGG - chr4_2:47418719-47418738 Msa0603210:intron 35.0%
! TTTTCTCTATTCTGCTCTTG+GGG - chr4_2:47418720-47418739 Msa0603210:intron 35.0%
!!! ATCTCATGCATGTTGTTTTC+TGG - chr4_2:47418767-47418786 Msa0603210:intron 35.0%
! CAATATGGTAATGAGGAACA+AGG - chr4_2:47418804-47418823 Msa0603210:intron 35.0%
! TTGTGATTTATGTTTGGGGT+TGG - chr4_2:47418929-47418948 Msa0603210:intron 35.0%
TTGATTGTGTAGGTATGAAG+AGG - chr4_2:47419101-47419120 Msa0603210:intron 35.0%
TGATTGTGTAGGTATGAAGA+GGG - chr4_2:47419102-47419121 Msa0603210:intron 35.0%
ATGGAAAGAAGAAGGAAGAA+GGG - chr4_2:47419193-47419212 Msa0603210:CDS 35.0%
!! AAAAATAAATGGGTTGGGAG+TGG - chr4_2:47419351-47419370 Msa0603210:CDS 35.0%
! GTAGCAATTAAGTTGTTGTG+GGG - chr4_2:47419468-47419487 Msa0603210:intron 35.0%
AATACAAGTTGTTGCAGGTA+TGG - chr4_2:47419586-47419605 Msa0603210:intron 35.0%
TTGACAGAAAGTGATTATGG+AGG - chr4_2:47419729-47419748 Msa0603210:intron 35.0%
GAAAGTGATTATGGAGGATT+AGG - chr4_2:47419735-47419754 Msa0603210:intron 35.0%
!! AGCTAGGAATAAGCTGTTTT+TGG - chr4_2:47419807-47419826 Msa0603210:intron 35.0%
!!! AGCTGTTTTTGGAAGAAGTT+TGG - chr4_2:47419818-47419837 Msa0603210:intron 35.0%
ACACTTGATTCCAAGTTACA+GGG + chr4_2:47419893-47419912 None:intergenic 35.0%
AACACTTGATTCCAAGTTAC+AGG + chr4_2:47419894-47419913 None:intergenic 35.0%
! TAACAAAATTCCGGACGTTT+TGG - chr4_2:47419933-47419952 Msa0603210:intron 35.0%
!!! GGTACCAGTTTCATTGATTT+TGG - chr4_2:47419954-47419973 Msa0603210:intron 35.0%
TGGACCAAAATCAATGAAAC+TGG + chr4_2:47419961-47419980 None:intergenic 35.0%
!!! TCTGTAGACGATTTTGAAGT+TGG - chr4_2:47419990-47420009 Msa0603210:intron 35.0%
!!! CTGTAGACGATTTTGAAGTT+GGG - chr4_2:47419991-47420010 Msa0603210:intron 35.0%
!!! TGTAGACGATTTTGAAGTTG+GGG - chr4_2:47419992-47420011 Msa0603210:intron 35.0%
TTGATGTAGAGCATGAACTT+CGG + chr4_2:47420418-47420437 None:intergenic 35.0%
GTTCATGCTCTACATCAAAT+AGG - chr4_2:47420420-47420439 Msa0603210:intron 35.0%
CGAGCAATTGGTTAAATTTC+TGG + chr4_2:47420703-47420722 None:intergenic 35.0%
!! CATTTCTTGGTTTGTGACTA+TGG - chr4_2:47420845-47420864 Msa0603210:intron 35.0%
!!! CTTTTTTCAGAATTTGAGGG+AGG - chr4_2:47420899-47420918 Msa0603210:intron 35.0%
!! TTTTTCAGAATTTGAGGGAG+GGG - chr4_2:47420901-47420920 Msa0603210:intron 35.0%
! CTCATTTTGCACATGATTTG+AGG + chr4_2:47420934-47420953 None:intergenic 35.0%
TGAGAAGGAGAAATTTGAAG+AGG - chr4_2:47420950-47420969 Msa0603210:intron 35.0%
TTTAGGTGGTATAGGTACAA+AGG - chr4_2:47421240-47421259 Msa0603210:intron 35.0%
TTAGGTGGTATAGGTACAAA+GGG - chr4_2:47421241-47421260 Msa0603210:intron 35.0%
GTCTAAACAATCTGAACCAA+AGG - chr4_2:47421311-47421330 Msa0603210:intron 35.0%
TTAGTGGTGTTTAGTGGTTA+AGG - chr4_2:47421334-47421353 Msa0603210:intron 35.0%
! TATTGTTGTAGCACTTTTGG+TGG - chr4_2:47421372-47421391 Msa0603210:intron 35.0%
! TTCTGAAGATGCTAAAAGGT+TGG - chr4_2:47421429-47421448 Msa0603210:intron 35.0%
AATTGTGCAATCAAAGAGCA+TGG + chr4_2:47421577-47421596 None:intergenic 35.0%
TATGTGCATTAGAAAGTGAC+AGG - chr4_2:47421665-47421684 Msa0603210:intron 35.0%
!! AAGTCTCTGGAATGTAAGAT+TGG - chr4_2:47422342-47422361 Msa0603210:intron 35.0%
!! TCTAATTCTTGCTGTTACTG+AGG - chr4_2:47422416-47422435 Msa0603210:intron 35.0%
CTCTAGCATTATGCATTGTT+TGG - chr4_2:47422564-47422583 Msa0603210:CDS 35.0%
!! CAAAGAGCACTTTACTCTTT+AGG + chr4_2:47423419-47423438 None:intergenic 35.0%
ATGTCCGCCTCATTAATTAA+GGG + chr4_2:47423839-47423858 None:intergenic 35.0%
CTCAACACAATTAATCAGAG+TGG + chr4_2:47423984-47424003 None:intergenic 35.0%
GCATAAAAGTTCCCAATAAC+AGG - chr4_2:47424075-47424094 Msa0603210:intron 35.0%
TGTTCAACATCTTGATATGC+AGG + chr4_2:47424218-47424237 None:intergenic 35.0%
AAGAAACTTCTGCATTGTGT+AGG + chr4_2:47424342-47424361 None:intergenic 35.0%
ACAAAAATCACCACCATAAG+GGG + chr4_2:47424680-47424699 None:intergenic 35.0%
ACAGTAGATGAGTTAAGAAC+AGG - chr4_2:47424741-47424760 Msa0603210:intron 35.0%
TTGTTATGTCCGTTGAAAAC+AGG - chr4_2:47425039-47425058 Msa0603210:intron 35.0%
TAAGTCTGGAGAGAATCAAA+AGG + chr4_2:47425082-47425101 None:intergenic 35.0%
AACATTAAACAGGGTGAAGT+TGG - chr4_2:47425267-47425286 Msa0603210:intron 35.0%
GGAAGCAAAACTTGAAGAAT+TGG - chr4_2:47425447-47425466 Msa0603210:five_prime_UTR 35.0%
GAGAAAAACAGAACGAGAGA+AGG - chr4_2:47418557-47418576 Msa0603210:CDS 40.0%
AGAAGAAGAAAAGAAGCCGA+TGG - chr4_2:47418590-47418609 Msa0603210:CDS 40.0%
AATTTCCCTTCTTCCTCCAT+CGG + chr4_2:47418609-47418628 None:intergenic 40.0%
GAGGGAAGAAATGAGCAAAA+TGG + chr4_2:47418689-47418708 None:intergenic 40.0%
TTTGCTCATTTCTTCCCTCT+AGG - chr4_2:47418690-47418709 Msa0603210:intron 40.0%
TTGCTCATTTCTTCCCTCTA+GGG - chr4_2:47418691-47418710 Msa0603210:intron 40.0%
! GCTTTTCTCTATTCTGCTCT+TGG - chr4_2:47418718-47418737 Msa0603210:intron 40.0%
! GAGCTAATGTCATGCTTTTC+AGG - chr4_2:47418832-47418851 Msa0603210:intron 40.0%
!!! TGGGGTTGGAATTTTGATTC+TGG - chr4_2:47418943-47418962 Msa0603210:intron 40.0%
GAAGAGAAGATTGATGCAGA+TGG - chr4_2:47419174-47419193 Msa0603210:CDS 40.0%
TGATGCAGATGGAAAGAAGA+AGG - chr4_2:47419185-47419204 Msa0603210:CDS 40.0%
GATGGAAAGAAGAAGGAAGA+AGG - chr4_2:47419192-47419211 Msa0603210:CDS 40.0%
GAGACATTACCTCAAACACT+TGG + chr4_2:47419383-47419402 None:intergenic 40.0%
! TGTTTTGCGGAAGCTTAAGT+TGG - chr4_2:47419563-47419582 Msa0603210:intron 40.0%
GTTGGAATACAAGTTGTTGC+AGG - chr4_2:47419581-47419600 Msa0603210:intron 40.0%
CAGTTCACCAACTACTCATA+TGG + chr4_2:47419651-47419670 None:intergenic 40.0%
ATTATGGAGGATTAGGGCAA+GGG - chr4_2:47419742-47419761 Msa0603210:intron 40.0%
! TGCTGATTGAGATACAAGCT+AGG - chr4_2:47419791-47419810 Msa0603210:intron 40.0%
! AGTTTGGTGAAACCCGTATT+TGG - chr4_2:47419834-47419853 Msa0603210:intron 40.0%
! GTTTGGTGAAACCCGTATTT+GGG - chr4_2:47419835-47419854 Msa0603210:intron 40.0%
! GTGAGTTCTTACCGTTTTAG+TGG + chr4_2:47419869-47419888 None:intergenic 40.0%
TCGTCTACAGACTTCAAATC+TGG + chr4_2:47419981-47420000 None:intergenic 40.0%
!!! GTAGACGATTTTGAAGTTGG+GGG - chr4_2:47419993-47420012 Msa0603210:intron 40.0%
! GGCAATTGATAGCAGAATTG+AGG - chr4_2:47420656-47420675 Msa0603210:intron 40.0%
TAACTTGACGTGTTCTTGAC+AGG - chr4_2:47421052-47421071 Msa0603210:intron 40.0%
AGGTACAAAGGGAATGATGA+TGG - chr4_2:47421252-47421271 Msa0603210:intron 40.0%
!! GATGGTACTGATCAAGTTAG+TGG - chr4_2:47421270-47421289 Msa0603210:intron 40.0%
CAATCTGAACCAAAGGTTAG+TGG - chr4_2:47421318-47421337 Msa0603210:intron 40.0%
CACTAAACACCACTAACCTT+TGG + chr4_2:47421330-47421349 None:intergenic 40.0%
CAAAGGTTAGTGGTGTTTAG+TGG - chr4_2:47421328-47421347 Msa0603210:intron 40.0%
! AGGCTTCTGAAGATGCTAAA+AGG - chr4_2:47421425-47421444 Msa0603210:intron 40.0%
TGCTCTAGCACTTTCGATTT+CGG + chr4_2:47421482-47421501 None:intergenic 40.0%
TACACAAGCTTCTAAACCAC+AGG - chr4_2:47421546-47421565 Msa0603210:intron 40.0%
! AAAGAGCATGGTAAAACCTG+TGG + chr4_2:47421565-47421584 None:intergenic 40.0%
! GTTTTCTTACTGTCAGGATG+TGG - chr4_2:47421769-47421788 Msa0603210:intron 40.0%
! TTTTAACAGAAGCCTGACCA+TGG + chr4_2:47422234-47422253 None:intergenic 40.0%
!! TCTCTGGAATGTAAGATTGG+AGG - chr4_2:47422345-47422364 Msa0603210:intron 40.0%
AATGTAAGATTGGAGGTGAG+TGG - chr4_2:47422352-47422371 Msa0603210:intron 40.0%
ATGTAAGATTGGAGGTGAGT+GGG - chr4_2:47422353-47422372 Msa0603210:intron 40.0%
AGAGCAAGACAAAACCTTTC+CGG + chr4_2:47422546-47422565 None:intergenic 40.0%
!! GCAGTTGCAGTTTGATTTGA+AGG - chr4_2:47422620-47422639 Msa0603210:CDS 40.0%
ACTGCATAAAAGCAGATAGC+AGG + chr4_2:47422814-47422833 None:intergenic 40.0%
! TAGAGGATGCAATGGTGTTT+TGG + chr4_2:47422872-47422891 None:intergenic 40.0%
GAATGGATCGTCTATAACTC+AGG - chr4_2:47422939-47422958 Msa0603210:intron 40.0%
!! GAGTGAATACTTGGTGTTTG+AGG - chr4_2:47423182-47423201 Msa0603210:CDS 40.0%
AACAGGCATCTTCCACATTT+GGG + chr4_2:47423597-47423616 None:intergenic 40.0%
AAACAGGCATCTTCCACATT+TGG + chr4_2:47423598-47423617 None:intergenic 40.0%
! GTCCATGGCTGATTTAATTG+AGG - chr4_2:47423675-47423694 Msa0603210:intron 40.0%
TCATACACTCATCCTTCTTG+AGG + chr4_2:47423749-47423768 None:intergenic 40.0%
CTTCTCCCCACATATTAATC+TGG + chr4_2:47423781-47423800 None:intergenic 40.0%
CAGATTAATATGTGGGGAGA+AGG - chr4_2:47423779-47423798 Msa0603210:intron 40.0%
GGAGAAGGCTTCAAAAGTAA+CGG - chr4_2:47423794-47423813 Msa0603210:intron 40.0%
CATGTCCGCCTCATTAATTA+AGG + chr4_2:47423840-47423859 None:intergenic 40.0%
AATTAATGAGGCGGACATGA+AGG - chr4_2:47423841-47423860 Msa0603210:intron 40.0%
ATGAAGGAGAAATAGGGCAA+TGG - chr4_2:47423857-47423876 Msa0603210:intron 40.0%
ATAGGGCAATGGAACAAAAC+AGG - chr4_2:47423868-47423887 Msa0603210:intron 40.0%
! CGGCAAAATGAAAGGTTGAT+TGG + chr4_2:47424020-47424039 None:intergenic 40.0%
! AAGGATAGCGGCAAAATGAA+AGG + chr4_2:47424028-47424047 None:intergenic 40.0%
CTGCATTGTGTAGGAGAATT+TGG + chr4_2:47424333-47424352 None:intergenic 40.0%
! TTGGCAGCAGAAAGTACATA+AGG + chr4_2:47424576-47424595 None:intergenic 40.0%
! TCTTCTTTTTCCCCTTATGG+TGG - chr4_2:47424667-47424686 Msa0603210:intron 40.0%
TAACTCATCTACTGTTTCCG+TGG + chr4_2:47424736-47424755 None:intergenic 40.0%
AACAGGAGCAACTACTATGA+AGG - chr4_2:47424758-47424777 Msa0603210:intron 40.0%
CAACTCGATCGTTAAAGACT+TGG + chr4_2:47424825-47424844 None:intergenic 40.0%
CTGTTCATTTATCTCGTCCA+TGG + chr4_2:47424925-47424944 None:intergenic 40.0%
AAATAAGCAGCTGCACCAAT+TGG + chr4_2:47424987-47425006 None:intergenic 40.0%
TTCGTATATTAGCACTACCC+TGG + chr4_2:47425315-47425334 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+TGG - chr4_2:47425369-47425388 Msa0603210:five_prime_UTR 40.0%
!! GGTTTTAATGCATGTCCATG+TGG - chr4_2:47425390-47425409 Msa0603210:five_prime_UTR 40.0%
! TTGTTCTTTTCAGCACGAAC+TGG - chr4_2:47425426-47425445 Msa0603210:five_prime_UTR 40.0%
AGAATTGGAGAATGCTGAGT+TGG - chr4_2:47425462-47425481 Msa0603210:five_prime_UTR 40.0%
AATTCATCTTCCTCAGGAGT+CGG + chr4_2:47425580-47425599 None:intergenic 40.0%
AAAACAGAACGAGAGAAGGG+AGG - chr4_2:47418518-47418537 Msa0603210:CDS 45.0%
AAACAGAACGAGAGAAGGGA+GGG - chr4_2:47418519-47418538 Msa0603210:CDS 45.0%
AAAACAGAACGAGAGAAGGG+AGG - chr4_2:47418518-47418537 Msa0603210:CDS 45.0%
AAACAGAACGAGAGAAGGGA+GGG - chr4_2:47418519-47418538 Msa0603210:CDS 45.0%
AGAAGAAAAGAAGCCGATGG+AGG - chr4_2:47418593-47418612 Msa0603210:CDS 45.0%
ATGAGCAAAATGGAGCTTGC+TGG + chr4_2:47418679-47418698 None:intergenic 45.0%
GGGAATGCATTGTTCAAAGC+TGG - chr4_2:47419213-47419232 Msa0603210:intron 45.0%
GATTATGGAGGATTAGGGCA+AGG - chr4_2:47419741-47419760 Msa0603210:intron 45.0%
! TGAAACCCGTATTTGGGACA+GGG - chr4_2:47419841-47419860 Msa0603210:intron 45.0%
AGAACTCACTCCCTGTAACT+TGG - chr4_2:47419880-47419899 Msa0603210:intron 45.0%
GAAACTGGTACCAAAACGTC+CGG + chr4_2:47419946-47419965 None:intergenic 45.0%
CACACAAGGGAGACATAGAA+AGG + chr4_2:47420793-47420812 None:intergenic 45.0%
TGCTATCAGCAACAAGCTTG+CGG - chr4_2:47421107-47421126 Msa0603210:intron 45.0%
!! AATCGAAAGTGCTAGAGCAG+TGG - chr4_2:47421483-47421502 Msa0603210:intron 45.0%
TCTTACTGTCAGGATGTGGA+TGG - chr4_2:47421773-47421792 Msa0603210:intron 45.0%
ATTGCTGCATCAGCCAAGTA+AGG - chr4_2:47421832-47421851 Msa0603210:intron 45.0%
GTGATCTCAGTTAGCTGATG+AGG + chr4_2:47422264-47422283 None:intergenic 45.0%
TGTGCAAGTAGACAAGTCTC+TGG - chr4_2:47422329-47422348 Msa0603210:intron 45.0%
TGTAAGATTGGAGGTGAGTG+GGG - chr4_2:47422354-47422373 Msa0603210:intron 45.0%
!! TTCTTGCTGTTACTGAGGAG+AGG - chr4_2:47422421-47422440 Msa0603210:intron 45.0%
!! TCTTGCTGTTACTGAGGAGA+GGG - chr4_2:47422422-47422441 Msa0603210:intron 45.0%
!! GGATGCAATGGTGTTTTGGA+AGG + chr4_2:47422868-47422887 None:intergenic 45.0%
ACACCATTGCATCCTCTATC+TGG - chr4_2:47422874-47422893 Msa0603210:intron 45.0%
CACCATTGCATCCTCTATCT+GGG - chr4_2:47422875-47422894 Msa0603210:intron 45.0%
TACCCAGATAGAGGATGCAA+TGG + chr4_2:47422880-47422899 None:intergenic 45.0%
!! TGTATTGGCTACCCAGATAG+AGG + chr4_2:47422889-47422908 None:intergenic 45.0%
CGCCTCAATTAAATCAGCCA+TGG + chr4_2:47423680-47423699 None:intergenic 45.0%
! TGGCTGATTTAATTGAGGCG+TGG - chr4_2:47423680-47423699 Msa0603210:intron 45.0%
TCTTGAGGAAACAAACTGCG+CGG + chr4_2:47423734-47423753 None:intergenic 45.0%
! CGCAGTTTGTTTCCTCAAGA+AGG - chr4_2:47423734-47423753 Msa0603210:intron 45.0%
GCGGACATGAAGGAGAAATA+GGG - chr4_2:47423851-47423870 Msa0603210:intron 45.0%
ATTAATAGGGCAGTCTCACC+TGG + chr4_2:47424435-47424454 None:intergenic 45.0%
GACTGCCCTATTAATCAGAG+TGG - chr4_2:47424440-47424459 Msa0603210:intron 45.0%
TGTACTTTCTGCTGCCAAGT+TGG - chr4_2:47424578-47424597 Msa0603210:intron 45.0%
GTACTTTCTGCTGCCAAGTT+GGG - chr4_2:47424579-47424598 Msa0603210:intron 45.0%
! TGCTGCCAAGTTGGGTATTA+AGG - chr4_2:47424587-47424606 Msa0603210:intron 45.0%
! TGATGATGTCGACAAGACCA+TGG - chr4_2:47424905-47424924 Msa0603210:intron 45.0%
!! GAAGCATTGTCAGCTCCAAT+TGG - chr4_2:47424969-47424988 Msa0603210:intron 45.0%
!!! TGCAGCTGCTTATTTTGACG+AGG - chr4_2:47424992-47425011 Msa0603210:intron 45.0%
GAAGCGTGAGCTGTAAATGT+TGG + chr4_2:47425505-47425524 None:intergenic 45.0%
GACTCCTGAGGAAGATGAAT+TGG - chr4_2:47425579-47425598 Msa0603210:five_prime_UTR 45.0%
!! TTATAAATATCATATTATAA+CGG + chr4_2:47421035-47421054 None:intergenic 5.0%
AAGAAGCCGATGGAGGAAGA+AGG - chr4_2:47418600-47418619 Msa0603210:CDS 50.0%
AGAAGCCGATGGAGGAAGAA+GGG - chr4_2:47418601-47418620 Msa0603210:CDS 50.0%
! GTGAAACCCGTATTTGGGAC+AGG - chr4_2:47419840-47419859 Msa0603210:intron 50.0%
TTGAAGTTGGGGGCAGAAGT+AGG - chr4_2:47420003-47420022 Msa0603210:intron 50.0%
ACTTTGAACGGGAACTCCTC+AGG - chr4_2:47420385-47420404 Msa0603210:intron 50.0%
GAACTTCGGCAACATACCTG+AGG + chr4_2:47420404-47420423 None:intergenic 50.0%
GCTGATAGCAGGCACCTTAA+TGG + chr4_2:47421097-47421116 None:intergenic 50.0%
!! GCAAGCTTGTTGCTGATAGC+AGG + chr4_2:47421108-47421127 None:intergenic 50.0%
ACTGGTGGAAGAGGTTCAAG+AGG - chr4_2:47421796-47421815 Msa0603210:intron 50.0%
TTTCAAAGCAGCTCCTGCCA+TGG - chr4_2:47422214-47422233 Msa0603210:intron 50.0%
GAATGCTTTGCAAAGCACGC+AGG - chr4_2:47422376-47422395 Msa0603210:intron 50.0%
GGCGGACATGAAGGAGAAAT+AGG - chr4_2:47423850-47423869 Msa0603210:intron 50.0%
!! AGAAGGTGCTAAAGCCACCA+CGG - chr4_2:47424716-47424735 Msa0603210:intron 50.0%
CTCATCTACTGTTTCCGTGG+TGG + chr4_2:47424733-47424752 None:intergenic 50.0%
GCTGCCAATTCATCTTCCTC+AGG + chr4_2:47425586-47425605 None:intergenic 50.0%
AGATGAATTGGCAGCTCTGC+AGG - chr4_2:47425591-47425610 Msa0603210:five_prime_UTR 50.0%
GAGAAAAGCTGCGCCCTAGA+GGG + chr4_2:47418707-47418726 None:intergenic 55.0%
AGAGAAAAGCTGCGCCCTAG+AGG + chr4_2:47418708-47418727 None:intergenic 55.0%
TGGCGCTCACCAAGTGTTTG+AGG - chr4_2:47419371-47419390 Msa0603210:CDS 55.0%
GATTAGGGCAAGGGCAGAAG+TGG - chr4_2:47419751-47419770 Msa0603210:intron 55.0%
TGGAGCCCTGTCCCAAATAC+GGG + chr4_2:47419849-47419868 None:intergenic 55.0%
GTGGAGCCCTGTCCCAAATA+CGG + chr4_2:47419850-47419869 None:intergenic 55.0%
GGGACAGGGCTCCACTAAAA+CGG - chr4_2:47419855-47419874 Msa0603210:intron 55.0%
CAGAATTTGAGGGAGGGGAG+TGG - chr4_2:47420906-47420925 Msa0603210:intron 55.0%
AAGTGCTAGAGCAGTGGTGC+TGG - chr4_2:47421489-47421508 Msa0603210:intron 55.0%
AGTGCTAGAGCAGTGGTGCT+GGG - chr4_2:47421490-47421509 Msa0603210:intron 55.0%
! AGAGCAGTGGTGCTGGGAAT+TGG - chr4_2:47421496-47421515 Msa0603210:intron 55.0%
! GAGCAGTGGTGCTGGGAATT+GGG - chr4_2:47421497-47421516 Msa0603210:intron 55.0%
! AGCAGTGGTGCTGGGAATTG+GGG - chr4_2:47421498-47421517 Msa0603210:intron 55.0%
CTGTCAGGATGTGGATGGAC+TGG - chr4_2:47421778-47421797 Msa0603210:intron 55.0%
!! TCAGGATGTGGATGGACTGG+TGG - chr4_2:47421781-47421800 Msa0603210:intron 55.0%
!! TGTGGATGGACTGGTGGAAG+AGG - chr4_2:47421787-47421806 Msa0603210:intron 55.0%
AACAGAAGCCTGACCATGGC+AGG + chr4_2:47422230-47422249 None:intergenic 55.0%
GAGGAAACAAACTGCGCGGA+CGG + chr4_2:47423730-47423749 None:intergenic 55.0%
TCCACAGTGCATGTCTCAGC+TGG - chr4_2:47425523-47425542 Msa0603210:five_prime_UTR 55.0%
CCACAGTGCATGTCTCAGCT+GGG - chr4_2:47425524-47425543 Msa0603210:five_prime_UTR 55.0%
TTTGCAGGAACAGGACGTGC+AGG + chr4_2:47425556-47425575 None:intergenic 55.0%
GAACGAGAGAAGGGAGGGAG+AGG - chr4_2:47418524-47418543 Msa0603210:CDS 60.0%
GAACGAGAGAAGGGAGGGAG+AGG - chr4_2:47418524-47418543 Msa0603210:CDS 60.0%
! AGTGGTGCTGGGAATTGGGG+AGG - chr4_2:47421501-47421520 Msa0603210:intron 60.0%
AAGCAGCTCCTGCCATGGTC+AGG - chr4_2:47422219-47422238 Msa0603210:intron 60.0%
CCCAGCTGAGACATGCACTG+TGG + chr4_2:47425527-47425546 None:intergenic 60.0%
CAGTGCATGTCTCAGCTGGG+AGG - chr4_2:47425527-47425546 Msa0603210:five_prime_UTR 60.0%
! GGAGTCGGCTTTGCAGGAAC+AGG + chr4_2:47425565-47425584 None:intergenic 60.0%
! TCCTGCAAAGCCGACTCCTG+AGG - chr4_2:47425567-47425586 Msa0603210:five_prime_UTR 60.0%
! TCCTCAGGAGTCGGCTTTGC+AGG + chr4_2:47425571-47425590 None:intergenic 60.0%
GGCAGCTCTGCAGGCTGAGA+TGG - chr4_2:47425600-47425619 Msa0603210:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 47418494 47425630 47418494 ID=Msa0603210;Name=Msa0603210
chr4_2 mRNA 47418494 47425630 47418494 ID=Msa0603210-mRNA-1;Parent=Msa0603210;Name=Msa0603210-mRNA-1;_AED=0.38;_eAED=0.39;_QI=349|0.37|0.55|1|0.5|0.77|9|0|240
chr4_2 exon 47418494 47418652 47418494 ID=Msa0603210-mRNA-1:exon:10890;Parent=Msa0603210-mRNA-1
chr4_2 exon 47419111 47419225 47419111 ID=Msa0603210-mRNA-1:exon:10889;Parent=Msa0603210-mRNA-1
chr4_2 exon 47419328 47419419 47419328 ID=Msa0603210-mRNA-1:exon:10888;Parent=Msa0603210-mRNA-1
chr4_2 exon 47421477 47421482 47421477 ID=Msa0603210-mRNA-1:exon:10887;Parent=Msa0603210-mRNA-1
chr4_2 exon 47422271 47422339 47422271 ID=Msa0603210-mRNA-1:exon:10886;Parent=Msa0603210-mRNA-1
chr4_2 exon 47422557 47422697 47422557 ID=Msa0603210-mRNA-1:exon:10885;Parent=Msa0603210-mRNA-1
chr4_2 exon 47422792 47422870 47422792 ID=Msa0603210-mRNA-1:exon:10884;Parent=Msa0603210-mRNA-1
chr4_2 exon 47423153 47423203 47423153 ID=Msa0603210-mRNA-1:exon:10883;Parent=Msa0603210-mRNA-1
chr4_2 exon 47425271 47425630 47425271 ID=Msa0603210-mRNA-1:exon:10882;Parent=Msa0603210-mRNA-1
chr4_2 five_prime_UTR 47425282 47425630 47425282 ID=Msa0603210-mRNA-1:five_prime_utr;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47425271 47425281 47425271 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47423153 47423203 47423153 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47422792 47422870 47422792 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47422557 47422697 47422557 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47422271 47422339 47422271 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47421477 47421482 47421477 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47419328 47419419 47419328 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47419111 47419225 47419111 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2 CDS 47418494 47418652 47418494 ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
Gene Sequence

>Msa0603210

ATGCTTTTCAGGGGAGTGGAACCTCAAATCATGTGCAAAATGAGAAGGAGAAATTTGAAGAGGTACAAAGGGAATGATGATGGTACTGATCAAGTTAGTGGTGTTGAACTTGATAAAGTGTCTAAACAATCTGAACCAAAGGCTTCTGAAGATGCTAAAAGGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAAAGTGCTAGAGCAGTGGTGCTGGGAATTGGGGAGGCACTTGAAGAACAAGAAAAAGTTACACAAGCTTCTAAACCACAGGATGTGGATGGACTGGTGGAAGAGGTTCAAGAGGCTAGAAAAATCAGATTGCTGCATCAGCCAAGTAAGGTCAACATGATAATGTTAGAAGGTGCTAAAGCCACCACGGAAACAGTAGATGAGTTAAGAACAGGAGCAACTACTATGAAGGCTATGCAGAAAGCAACGAATATTGATGATGTCGACAAGACCATGGACGAGATAAATGAACAGACTGAGAATATGAAGCAGATTCAAGAAGCATTGTCAGCTCCAATTGGTGCAGCTGCTTATTTTGACGAGAATGCTGAGTTGGAAGAACAACTTCTTCAGCCAACATTTACAGCTCACGCTTCCACAGTGCATGTCTCAGCTGGGAGGCAACCTGCACGTCCTGTTCCTGCAAAGCCGACTCCTGAGGAAGATGAATTGGCAGCTCTGCAGGCTGAGATGGCACTTTGA

Protein sequence

>Msa0603210

MLFRGVEPQIMCKMRRRNLKRYKGNDDGTDQVSGVELDKVSKQSEPKASEDAKRLVNQEKSFACAEIESARAVVLGIGEALEEQEKVTQASKPQDVDGLVEEVQEARKIRLLHQPSKVNMIMLEGAKATTETVDELRTGATTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPIGAAAYFDENAELEEQLLQPTFTAHASTVHVSAGRQPARPVPAKPTPEEDELAALQAEMAL*