AlfalfaGEDB | Msa0603210

M. sativa cultivar zhongmu-4 / Msa0603210

KEGG: K12194
GO: -
PFAM: PF16712.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603210	XP_022754926.1	79.545	132	16	1	120	240	87	218	4.14e-57	191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603210	sp\|O82197\|VP321_ARATH	70.455	132	22	3	120	240	88	213	6.77e-49	162

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0545120	Msa0603210	0.814804	1.278507e-51	-8.615850e-47
Msa0603210	Msa0679540	0.983950	3.664306e-159	-8.615850e-47
Msa0603210	Msa0698400	0.815596	8.527294e-52	-8.615850e-47
Msa0603210	Msa0717310	0.811101	8.283331e-51	-8.615850e-47
Msa0603210	Msa0895120	0.837140	6.196898e-57	-8.615850e-47
Msa0603210	Msa1420290	0.801847	7.423170e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603210	MtrunA17_Chr6g0487521	82.576	132	12	1	120	240	89	220	2.16e-59	187
Msa0603210	MtrunA17_Chr8g0389481	71.212	132	25	3	120	240	93	222	3.57e-43	145
Msa0603210	MtrunA17_Chr8g0389471	66.412	131	34	1	120	240	91	221	7.90e-41	139
Msa0603210	MtrunA17_Chr7g0255781	93.056	72	5	0	47	118	169	240	8.31e-37	135
Msa0603210	MtrunA17_Chr5g0441311	58.333	72	30	0	47	118	179	250	2.93e-19	86.3
Msa0603210	MtrunA17_Chr3g0093711	55.556	72	32	0	47	118	164	235	1.47e-17	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603210	AT2G19830.1	70.455	132	22	3	120	240	69	194	3.34e-50	163
Msa0603210	AT2G19830.2	70.455	132	22	3	120	240	88	213	6.88e-50	162
Msa0603210	AT4G29160.2	73.684	133	23	2	120	240	60	192	2.26e-49	160
Msa0603210	AT4G29160.1	73.684	133	23	2	120	240	87	219	5.46e-49	160
Msa0603210	AT4G29160.3	73.684	133	23	2	120	240	87	219	5.46e-49	160
Msa0603210	AT3G56480.1	67.568	74	22	1	47	118	168	241	9.09e-25	102
Msa0603210	AT2G40820.5	67.568	74	22	1	47	118	61	134	1.54e-23	97.8
Msa0603210	AT2G40820.3	67.568	74	22	1	47	118	183	256	4.18e-23	97.8
Msa0603210	AT2G40820.4	67.568	74	22	1	47	118	196	269	4.24e-23	97.8
Msa0603210	AT2G40820.2	67.568	74	22	1	47	118	171	244	4.54e-23	97.4

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Find 73 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAACGAGAGAAGGG+AGG	0.577096	4_2:-47425541	Msa0603210:five_prime_UTR
AAAACAGAACGAGAGAAGGG+AGG	0.577096	4_2:-47425584	Msa0603210:five_prime_UTR
AAACAGAACGAGAGAAGGGA+GGG	0.502519	4_2:-47425540	Msa0603210:five_prime_UTR
AAACAGAACGAGAGAAGGGA+GGG	0.502519	4_2:-47425583	Msa0603210:five_prime_UTR
AAATAAGCAGCTGCACCAAT+TGG	0.420089	4_2:+47419118	None:intergenic
AAATCATGTGCAAAATGAGA+AGG	0.599565	4_2:-47423167	Msa0603210:CDS
AACAGGAGCAACTACTATGA+AGG	0.534991	4_2:-47419344	Msa0603210:CDS
AAGAAGCCGATGGAGGAAGA+AGG	0.488234	4_2:-47425502	Msa0603210:five_prime_UTR
AAGTGCTAGAGCAGTGGTGC+TGG	0.451158	4_2:-47422613	Msa0603210:CDS
AATATGGTAATGAGGAACAA+GGG	0.673181	4_2:-47425297	Msa0603210:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGGGTTTATTTCAGAAAT+TGG	-	chr4_2:47418737-47418756	Msa0603210:intron	30.0%
ACTTGCTTGTGATTTATGTT+TGG	-	chr4_2:47418923-47418942	Msa0603210:intron	30.0%
CTTGCTTGTGATTTATGTTT+GGG	-	chr4_2:47418924-47418943	Msa0603210:intron	30.0%
TTGCTTGTGATTTATGTTTG+GGG	-	chr4_2:47418925-47418944	Msa0603210:intron	30.0%
CATTAGTGTAAGTGTAATCA+TGG	-	chr4_2:47419139-47419158	Msa0603210:CDS	30.0%
GTAATCATGGGATCTTAATA+CGG	-	chr4_2:47419152-47419171	Msa0603210:CDS	30.0%
CTACTTTCTAAACAATCTGA+TGG	+	chr4_2:47419452-47419471	None:intergenic	30.0%
TAAGTTACCATATGAGTAGT+TGG	-	chr4_2:47419641-47419660	Msa0603210:intron	30.0%
AAGTTGACAGAAAGTGATTA+TGG	-	chr4_2:47419726-47419745	Msa0603210:intron	30.0%
AAAGTGATTATGGAGGATTA+GGG	-	chr4_2:47419736-47419755	Msa0603210:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	47418494	47425630	47418494	ID=Msa0603210;Name=Msa0603210
chr4_2	mRNA	47418494	47425630	47418494	ID=Msa0603210-mRNA-1;Parent=Msa0603210;Name=Msa0603210-mRNA-1;_AED=0.38;_eAED=0.39;_QI=349\|0.37\|0.55\|1\|0.5\|0.77\|9\|0\|240
chr4_2	exon	47418494	47418652	47418494	ID=Msa0603210-mRNA-1:exon:10890;Parent=Msa0603210-mRNA-1
chr4_2	exon	47419111	47419225	47419111	ID=Msa0603210-mRNA-1:exon:10889;Parent=Msa0603210-mRNA-1
chr4_2	exon	47419328	47419419	47419328	ID=Msa0603210-mRNA-1:exon:10888;Parent=Msa0603210-mRNA-1
chr4_2	exon	47421477	47421482	47421477	ID=Msa0603210-mRNA-1:exon:10887;Parent=Msa0603210-mRNA-1
chr4_2	exon	47422271	47422339	47422271	ID=Msa0603210-mRNA-1:exon:10886;Parent=Msa0603210-mRNA-1
chr4_2	exon	47422557	47422697	47422557	ID=Msa0603210-mRNA-1:exon:10885;Parent=Msa0603210-mRNA-1
chr4_2	exon	47422792	47422870	47422792	ID=Msa0603210-mRNA-1:exon:10884;Parent=Msa0603210-mRNA-1
chr4_2	exon	47423153	47423203	47423153	ID=Msa0603210-mRNA-1:exon:10883;Parent=Msa0603210-mRNA-1
chr4_2	exon	47425271	47425630	47425271	ID=Msa0603210-mRNA-1:exon:10882;Parent=Msa0603210-mRNA-1
chr4_2	five_prime_UTR	47425282	47425630	47425282	ID=Msa0603210-mRNA-1:five_prime_utr;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47425271	47425281	47425271	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47423153	47423203	47423153	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47422792	47422870	47422792	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47422557	47422697	47422557	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47422271	47422339	47422271	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47421477	47421482	47421477	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47419328	47419419	47419328	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47419111	47419225	47419111	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1
chr4_2	CDS	47418494	47418652	47418494	ID=Msa0603210-mRNA-1:cds;Parent=Msa0603210-mRNA-1

Gene Sequence

>Msa0603210

ATGCTTTTCAGGGGAGTGGAACCTCAAATCATGTGCAAAATGAGAAGGAGAAATTTGAAGAGGTACAAAGGGAATGATGATGGTACTGATCAAGTTAGTGGTGTTGAACTTGATAAAGTGTCTAAACAATCTGAACCAAAGGCTTCTGAAGATGCTAAAAGGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAAAGTGCTAGAGCAGTGGTGCTGGGAATTGGGGAGGCACTTGAAGAACAAGAAAAAGTTACACAAGCTTCTAAACCACAGGATGTGGATGGACTGGTGGAAGAGGTTCAAGAGGCTAGAAAAATCAGATTGCTGCATCAGCCAAGTAAGGTCAACATGATAATGTTAGAAGGTGCTAAAGCCACCACGGAAACAGTAGATGAGTTAAGAACAGGAGCAACTACTATGAAGGCTATGCAGAAAGCAACGAATATTGATGATGTCGACAAGACCATGGACGAGATAAATGAACAGACTGAGAATATGAAGCAGATTCAAGAAGCATTGTCAGCTCCAATTGGTGCAGCTGCTTATTTTGACGAGAATGCTGAGTTGGAAGAACAACTTCTTCAGCCAACATTTACAGCTCACGCTTCCACAGTGCATGTCTCAGCTGGGAGGCAACCTGCACGTCCTGTTCCTGCAAAGCCGACTCCTGAGGAAGATGAATTGGCAGCTCTGCAGGCTGAGATGGCACTTTGA

Protein sequence

>Msa0603210

MLFRGVEPQIMCKMRRRNLKRYKGNDDGTDQVSGVELDKVSKQSEPKASEDAKRLVNQEKSFACAEIESARAVVLGIGEALEEQEKVTQASKPQDVDGLVEEVQEARKIRLLHQPSKVNMIMLEGAKATTETVDELRTGATTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPIGAAAYFDENAELEEQLLQPTFTAHASTVHVSAGRQPARPVPAKPTPEEDELAALQAEMAL*