AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717310 MtrunA17_Chr4g0059611 87.179 39 5 0 28 66 164 202 8.82e-16 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 140 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACATATTTATCCTTTAT+TGG 0.115318 5_1:-11074883 Msa0717310:three_prime_UTR
ACCAAGTAAGGATGAAAATT+TGG 0.123186 5_1:-11080747 Msa0717310:CDS
GCTCTTTGTTCTTATATATT+TGG 0.123415 5_1:-11075072 Msa0717310:three_prime_UTR
TAATGCAGTTGTTGATTATT+AGG 0.128581 5_1:-11075322 Msa0717310:three_prime_UTR
TCTTAAGCGTGAAGTGTTTA+AGG 0.168191 5_1:-11078082 Msa0717310:CDS
AGGTGTTCGGCAGCTTGTTC+TGG 0.174611 5_1:+11075762 None:intergenic
CACTTCATCTTATGATAATA+AGG 0.194458 5_1:-11073222 Msa0717310:three_prime_UTR
CTCTTTGTTCTTATATATTT+GGG 0.194873 5_1:-11075071 Msa0717310:three_prime_UTR
AAGAACTTCTTCTCAAAGTA+TGG 0.233679 5_1:-11075789 Msa0717310:three_prime_UTR
CTTATCTCATCACTGTCTTT+TGG 0.234136 5_1:+11073355 None:intergenic
TCACAAGAAGGTGGATTAAA+TGG 0.236239 5_1:-11073325 Msa0717310:three_prime_UTR
CTTTCTGATGTAGTGGTTAT+AGG 0.245618 5_1:-11077713 Msa0717310:intron
AAATATAGTAGCATTTAATT+TGG 0.250751 5_1:-11071483 Msa0717310:three_prime_UTR
AGTGATGCTCTAATTGAATA+AGG 0.252736 5_1:+11073298 None:intergenic
AACTTCATGAAATGATAATA+TGG 0.255270 5_1:-11071450 Msa0717310:three_prime_UTR
TGTTATTGATCAAGTTATTC+AGG 0.259959 5_1:-11076238 Msa0717310:three_prime_UTR
TAAGGCGAAACCGGCGTTAT+TGG 0.276097 5_1:-11078064 Msa0717310:CDS
AATGCAGTTGTTGATTATTA+GGG 0.282860 5_1:-11075321 Msa0717310:three_prime_UTR
AATAGAGTCACTCTGTTTCT+AGG 0.283537 5_1:-11077975 Msa0717310:three_prime_UTR
ATATGCCGTCCTCGAGGATT+CGG 0.289741 5_1:-11076285 Msa0717310:three_prime_UTR
ATTCGGGTTTATTACTTATA+CGG 0.293630 5_1:-11076268 Msa0717310:three_prime_UTR
TTGTTCTCATTTCTAATTAC+AGG 0.294038 5_1:+11075738 None:intergenic
GTCAAAATTCATGCCAATAA+AGG 0.301401 5_1:+11074870 None:intergenic
TCTAATCGGGCATAAGAATT+TGG 0.305782 5_1:-11074980 Msa0717310:three_prime_UTR
AAAATAGGCAAACTTGAATT+AGG 0.308920 5_1:+11071522 None:intergenic
TTTCTGATGTAGTGGTTATA+GGG 0.324983 5_1:-11077712 Msa0717310:intron
TGCAAAATGTCCGCTCCTTT+TGG 0.330249 5_1:+11077868 None:intergenic
TATTTCTCTCATCGTCATTA+TGG 0.332643 5_1:+11076525 None:intergenic
ATTACATGAGGTACCTTCAT+TGG 0.338544 5_1:-11075178 Msa0717310:three_prime_UTR
CCAAGTAAGGATGAAAATTT+GGG 0.338677 5_1:-11080746 Msa0717310:CDS
CTTCACGCTTAAGAAGCTTC+TGG 0.361296 5_1:+11078091 None:intergenic
TGCTGAAGCAAAGAGTAATT+AGG 0.363146 5_1:-11075568 Msa0717310:three_prime_UTR
AGAAAATGCTTATGTAGTTA+TGG 0.364690 5_1:-11074929 Msa0717310:three_prime_UTR
AAGACTCCATGGTTTCTAAC+AGG 0.367139 5_1:-11077673 Msa0717310:intron
AAAACGAACAACACGTTCTC+TGG 0.368321 5_1:+11073076 None:intergenic
TGTAATAACTTCAGCTAGTA+AGG 0.369694 5_1:+11073432 None:intergenic
AAGGGCAGAGATTGCAACTT+TGG 0.372459 5_1:-11073203 Msa0717310:three_prime_UTR
CCGGCGTTATTGGCGTTGAT+AGG 0.375246 5_1:-11078054 Msa0717310:CDS
GGTGTTCGGCAGCTTGTTCT+GGG 0.389840 5_1:+11075763 None:intergenic
TATGCCGTCCTCGAGGATTC+GGG 0.392313 5_1:-11076284 Msa0717310:three_prime_UTR
TTGGTGGAGGAGAAGAGAGA+TGG 0.408674 5_1:-11080718 Msa0717310:CDS
AAGACATTGAATTAAATTGC+TGG 0.409324 5_1:+11076571 None:intergenic
GTTTAGAAGCTTACCAAGTA+AGG 0.414744 5_1:-11080759 Msa0717310:CDS
TTAAGAGTGATTACCACTAT+AGG 0.420417 5_1:+11074775 None:intergenic
ATGAGAGTAAATAAATATAT+AGG 0.421079 5_1:-11075470 Msa0717310:three_prime_UTR
TAATCAATGAAAATTGCATT+AGG 0.422990 5_1:-11075389 Msa0717310:three_prime_UTR
AGGGCAGAGATTGCAACTTT+GGG 0.424505 5_1:-11073202 Msa0717310:three_prime_UTR
ACCCTTTGTAATAGTCCTCT+TGG 0.426530 5_1:+11076067 None:intergenic
TGAGGACTGCAGCTGCATTA+TGG 0.428123 5_1:-11071563 Msa0717310:three_prime_UTR
GAAAATGCTTATGTAGTTAT+GGG 0.431315 5_1:-11074928 Msa0717310:three_prime_UTR
GAAAATTTGGGAAGGATTGG+TGG 0.434912 5_1:-11080734 Msa0717310:CDS
CTGCAAGAGAGGGATTCATT+TGG 0.438914 5_1:-11073977 Msa0717310:intron
CATAGTTTAATGTGTCTTGA+AGG 0.440412 5_1:-11073174 Msa0717310:three_prime_UTR
CTCGTCAAATAATTGAAACT+TGG 0.440566 5_1:-11078010 Msa0717310:exon
ATCAACAGTTCTGTCACTAA+TGG 0.442237 5_1:+11074800 None:intergenic
AAGATATTGAGAGCTCTAAT+CGG 0.445132 5_1:-11074994 Msa0717310:three_prime_UTR
GATGAAAATTTGGGAAGGAT+TGG 0.445844 5_1:-11080737 Msa0717310:CDS
TGGTGTTATAGCAAGGGTTA+AGG 0.451433 5_1:-11077941 Msa0717310:three_prime_UTR
TGGTGGAGGAGAAGAGAGAT+GGG 0.451897 5_1:-11080717 Msa0717310:CDS
TCATTATGGAGTGAACTTGC+TGG 0.457097 5_1:+11076539 None:intergenic
TTTCAGGCTTTGGCAGATGA+TGG 0.458855 5_1:-11071732 Msa0717310:intron
GTGATGCTCTAATTGAATAA+GGG 0.459428 5_1:+11073299 None:intergenic
GTTTCTAGGACTGTCAGTAT+TGG 0.459566 5_1:-11077961 Msa0717310:three_prime_UTR
GACAACAGCAATTGCTATAG+AGG 0.467919 5_1:-11075034 Msa0717310:three_prime_UTR
ACGGAAACAACTCTGATAGT+TGG 0.468629 5_1:+11073112 None:intergenic
AAACCTTCAGATACAGTTGC+TGG 0.469643 5_1:+11075993 None:intergenic
TGTTGATGGTCGAGATAGAA+AGG 0.475552 5_1:-11076491 Msa0717310:intron
TGAAGTGTTTAAGGCGAAAC+CGG 0.479324 5_1:-11078073 Msa0717310:CDS
TCTAATTACAGGAAGGTGTT+CGG 0.480701 5_1:+11075749 None:intergenic
AACCAAGAGGACTATTACAA+AGG 0.488658 5_1:-11076069 Msa0717310:three_prime_UTR
ACTTCATCTTATGATAATAA+GGG 0.489015 5_1:-11073221 Msa0717310:three_prime_UTR
TGGCAAGCTTGAGATGAAAT+CGG 0.493206 5_1:-11074032 Msa0717310:three_prime_UTR
TTTAACACTTTCCTGCCAAA+AGG 0.494159 5_1:-11077883 Msa0717310:three_prime_UTR
TTAAGAAGCTTCTGGAACTT+CGG 0.499408 5_1:+11078099 None:intergenic
CTTATATCAGACAATAAACC+TGG 0.503922 5_1:+11073259 None:intergenic
ATAGCGCGTGGAGTTGTTGA+TGG 0.504153 5_1:-11076505 Msa0717310:three_prime_UTR
AAATATTCAAAGTGAAGGGA+GGG 0.506185 5_1:-11075645 Msa0717310:three_prime_UTR
ACCAAGAGGACTATTACAAA+GGG 0.508916 5_1:-11076068 Msa0717310:three_prime_UTR
ATCTTCTTCTCTGCAAGAGA+GGG 0.514554 5_1:-11073987 Msa0717310:three_prime_UTR
GTTGGAATACAATGAAATTG+AGG 0.515067 5_1:+11073130 None:intergenic
AATTGCATTAGGTGCAGCTA+AGG 0.518819 5_1:-11075378 Msa0717310:three_prime_UTR
TATATCAAGCATGAGGGAAG+TGG 0.521879 5_1:+11071691 None:intergenic
AGAACTTCTTCTCAAAGTAT+GGG 0.527076 5_1:-11075788 Msa0717310:three_prime_UTR
TCAGTATTGGTGTTATAGCA+AGG 0.528859 5_1:-11077948 Msa0717310:three_prime_UTR
AGATATTGAGAGCTCTAATC+GGG 0.529013 5_1:-11074993 Msa0717310:three_prime_UTR
CTCTGGAAGAAGGTAACAAA+CGG 0.530633 5_1:+11073093 None:intergenic
TGATGTTGATTATCTAGAGT+TGG 0.530885 5_1:-11075443 Msa0717310:three_prime_UTR
GGTTAAGTGTGTGAAGACTC+TGG 0.535656 5_1:-11074837 Msa0717310:three_prime_UTR
TAAAGAGCTTGCAAATATGC+AGG 0.538896 5_1:-11075419 Msa0717310:three_prime_UTR
ATAGTTTAATGTGTCTTGAA+GGG 0.538910 5_1:-11073173 Msa0717310:three_prime_UTR
TGCTCCACTTGAAGACTCCA+TGG 0.538936 5_1:-11077684 Msa0717310:three_prime_UTR
GAACTGTTGATATCCTATAG+TGG 0.540081 5_1:-11074788 Msa0717310:intron
AATTTGGGAAGGATTGGTGG+AGG 0.542928 5_1:-11080731 Msa0717310:CDS
CTAACTATTGAAAGCAATGT+GGG 0.548108 5_1:-11075495 Msa0717310:three_prime_UTR
ATAGGCAAACTTGAATTAGG+TGG 0.553646 5_1:+11071525 None:intergenic
AATGAAAACAAATCCAATGA+AGG 0.553651 5_1:+11075165 None:intergenic
TTCTAAACTATGTATCTCCA+TGG 0.559798 5_1:+11080774 None:intergenic
TTCTGATGTAGTGGTTATAG+GGG 0.560032 5_1:-11077711 Msa0717310:intron
CACTTTCCTGCCAAAAGGAG+CGG 0.563203 5_1:-11077878 Msa0717310:three_prime_UTR
AAAATATTCAAAGTGAAGGG+AGG 0.563975 5_1:-11075646 Msa0717310:three_prime_UTR
AAGCTACCTGTTAGAAACCA+TGG 0.567245 5_1:+11077667 None:intergenic
CAGTATTGGTGTTATAGCAA+GGG 0.569119 5_1:-11077947 Msa0717310:three_prime_UTR
TCACATCATCAATGACAAGA+AGG 0.569815 5_1:-11076211 Msa0717310:intron
TGTGGATAGATATGCGGTTG+TGG 0.570478 5_1:-11075214 Msa0717310:three_prime_UTR
AATATTCAAAGTGAAGGGAG+GGG 0.573065 5_1:-11075644 Msa0717310:three_prime_UTR
ACAACACGTTCTCTGGAAGA+AGG 0.576475 5_1:+11073083 None:intergenic
ATTCCAGCAACTGTATCTGA+AGG 0.581606 5_1:-11075996 Msa0717310:intron
ATAGGACGTGTAGTTGAAGC+TGG 0.582938 5_1:-11078036 Msa0717310:CDS
AATGCAGCACAAGCAAGTGA+AGG 0.583141 5_1:-11073388 Msa0717310:three_prime_UTR
CTATCTATATATCAAGCATG+AGG 0.584937 5_1:+11071684 None:intergenic
CTATGTTGTCAATACAAACC+AGG 0.591746 5_1:-11073277 Msa0717310:three_prime_UTR
AACAGTTCTGTCACTAATGG+AGG 0.594015 5_1:+11074803 None:intergenic
TCTCATTTCTAATTACAGGA+AGG 0.596659 5_1:+11075742 None:intergenic
GATCTTCTTCTCTGCAAGAG+AGG 0.603243 5_1:-11073988 Msa0717310:three_prime_UTR
CCTATCAACGCCAATAACGC+CGG 0.604514 5_1:+11078054 None:intergenic
ATGCAGCACAAGCAAGTGAA+GGG 0.608119 5_1:-11073387 Msa0717310:three_prime_UTR
AGGGTTAAGGAACTATTCAA+AGG 0.610387 5_1:-11077928 Msa0717310:three_prime_UTR
GCTAACTATTGAAAGCAATG+TGG 0.614830 5_1:-11075496 Msa0717310:three_prime_UTR
GTAAGGATGAAAATTTGGGA+AGG 0.615979 5_1:-11080742 Msa0717310:CDS
TATCTATATATCAAGCATGA+GGG 0.619581 5_1:+11071685 None:intergenic
ATGCTTATGTAGTTATGGGA+CGG 0.619882 5_1:-11074924 Msa0717310:three_prime_UTR
AATGAGAACAAGTCGACATG+AGG 0.619913 5_1:-11075726 Msa0717310:three_prime_UTR
GGGTCTAATATGACATTGCG+TGG 0.621343 5_1:-11074052 Msa0717310:three_prime_UTR
ATAAGAGTTGAATCACAAGA+AGG 0.621854 5_1:-11073337 Msa0717310:three_prime_UTR
AGAGTTGAATCACAAGAAGG+TGG 0.624818 5_1:-11073334 Msa0717310:three_prime_UTR
TTATGTAGTTATGGGACGGA+GGG 0.638184 5_1:-11074920 Msa0717310:three_prime_UTR
GAACTTCTTCTCAAAGTATG+GGG 0.639196 5_1:-11075787 Msa0717310:three_prime_UTR
GGTGGAGGAGAAGAGAGATG+GGG 0.641154 5_1:-11080716 Msa0717310:CDS
TAAACCCGAATCCTCGAGGA+CGG 0.641355 5_1:+11076280 None:intergenic
GAAACCATGGAGTCTTCAAG+TGG 0.642401 5_1:+11077680 None:intergenic
GTAATAAACCCGAATCCTCG+AGG 0.647085 5_1:+11076276 None:intergenic
CTTATGTAGTTATGGGACGG+AGG 0.654649 5_1:-11074921 Msa0717310:three_prime_UTR
TAATGATCAATGTTCATCGA+TGG 0.658335 5_1:-11075120 Msa0717310:three_prime_UTR
CATATCAGGTTGAAACCAAG+AGG 0.664183 5_1:-11076082 Msa0717310:intron
GGACGTGTAGTTGAAGCTGG+TGG 0.668929 5_1:-11078033 Msa0717310:CDS
ACGATGAGAGAAATAGCGCG+TGG 0.694923 5_1:-11076517 Msa0717310:three_prime_UTR
GATAGTCTGCTACATTACCA+TGG 0.696938 5_1:-11076327 Msa0717310:three_prime_UTR
TGAAATTGTGGATAGATATG+CGG 0.698305 5_1:-11075220 Msa0717310:three_prime_UTR
TGATTGATATGCCGTCCTCG+AGG 0.702496 5_1:-11076291 Msa0717310:three_prime_UTR
TGTTAAGGTTAAGACACATG+AGG 0.705218 5_1:-11071581 Msa0717310:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATGAAATATAAAGTTT+AGG + chr5_1:11072753-11072772 None:intergenic 10.0%
!!! TTATTCTTTTAAAATATCAA+TGG - chr5_1:11072824-11072843 Msa0717310:intron 10.0%
!! TATAATGAATTAATAGTTTA+AGG - chr5_1:11074890-11074909 Msa0717310:three_prime_UTR 10.0%
!! ATAATGAATTAATAGTTTAA+GGG - chr5_1:11074891-11074910 Msa0717310:three_prime_UTR 10.0%
!!! ATTTTTTTTATCTAAATTTC+TGG - chr5_1:11074954-11074973 Msa0717310:three_prime_UTR 10.0%
!!! TTATATGAAAATTTTGAAAT+TGG - chr5_1:11075304-11075323 Msa0717310:three_prime_UTR 10.0%
!! AAATCATAATAACATAAAAA+GGG + chr5_1:11077489-11077508 None:intergenic 10.0%
!!! TTTTTTTTTTTTGAAGTATT+TGG + chr5_1:11077800-11077819 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAGATAC+CGG - chr5_1:11077808-11077827 Msa0717310:intron 10.0%
!!! TATTTTCTTTTGTATATTAA+TGG - chr5_1:11078005-11078024 Msa0717310:exon 10.0%
!!! AAGTTTTTTTTAACATTAAA+AGG - chr5_1:11080079-11080098 Msa0717310:intron 10.0%
!!! AGTTTTTTTTAACATTAAAA+GGG - chr5_1:11080080-11080099 Msa0717310:intron 10.0%
!! AAAGAAATAATGAAATATCT+TGG - chr5_1:11071581-11071600 Msa0717310:three_prime_UTR 15.0%
!! TTATTAAAAGGAAGTTTAAT+GGG + chr5_1:11071721-11071740 None:intergenic 15.0%
!! ATTATTAAAAGGAAGTTTAA+TGG + chr5_1:11071722-11071741 None:intergenic 15.0%
!! AGAGATAGTATATTATTAAA+AGG + chr5_1:11071733-11071752 None:intergenic 15.0%
!!! TTTTAATAATATACTATCTC+TGG - chr5_1:11071732-11071751 Msa0717310:intron 15.0%
!! TTTAATAATATACTATCTCT+GGG - chr5_1:11071733-11071752 Msa0717310:intron 15.0%
!!! TTTGACTATGTTTTAATTTT+AGG + chr5_1:11072235-11072254 None:intergenic 15.0%
!! TTAGTGAAAAAACTAATTAA+AGG + chr5_1:11072387-11072406 None:intergenic 15.0%
!! TCTTGAATTTCTAAATAATT+GGG - chr5_1:11072418-11072437 Msa0717310:intron 15.0%
!!! TTACTTTAAAAAAATGTCAA+GGG + chr5_1:11072864-11072883 None:intergenic 15.0%
!!! ATTACTTTAAAAAAATGTCA+AGG + chr5_1:11072865-11072884 None:intergenic 15.0%
!! ACAGAAAAATAAATATTTGT+AGG - chr5_1:11073071-11073090 Msa0717310:three_prime_UTR 15.0%
!!! TTTTCTTTTCACATATATAT+AGG + chr5_1:11073492-11073511 None:intergenic 15.0%
!! AAAAAACAAAAGAAAAGAAA+AGG - chr5_1:11073517-11073536 Msa0717310:intron 15.0%
!! AAAAACAAAAGAAAAGAAAA+GGG - chr5_1:11073518-11073537 Msa0717310:intron 15.0%
!!! ATTTTGTAAAAATAAATACC+TGG + chr5_1:11073795-11073814 None:intergenic 15.0%
!!! AGTTTCTTTTATTTTAATTG+AGG - chr5_1:11073938-11073957 Msa0717310:intron 15.0%
!!! GTTTCTTTTATTTTAATTGA+GGG - chr5_1:11073939-11073958 Msa0717310:intron 15.0%
!! AACAAATCATAAATAACAAA+TGG + chr5_1:11074383-11074402 None:intergenic 15.0%
!!! TAGATTTTTGTTTAAGATAT+TGG - chr5_1:11074586-11074605 Msa0717310:intron 15.0%
!! TAATGAATTAATAGTTTAAG+GGG - chr5_1:11074892-11074911 Msa0717310:three_prime_UTR 15.0%
!!! ATTTGCATATTTTTTAAATG+AGG - chr5_1:11074920-11074939 Msa0717310:three_prime_UTR 15.0%
!! CAGAAAATTTATGATATAAA+TGG - chr5_1:11075193-11075212 Msa0717310:three_prime_UTR 15.0%
!! AAAAGGTAGATTTATATATA+TGG + chr5_1:11075529-11075548 None:intergenic 15.0%
!! TCAATACATCAAATTAAAAA+AGG + chr5_1:11075546-11075565 None:intergenic 15.0%
!!! ATTCAGTTTAATTTTTGATT+TGG - chr5_1:11076060-11076079 Msa0717310:three_prime_UTR 15.0%
!!! TTCAGTTTAATTTTTGATTT+GGG - chr5_1:11076061-11076080 Msa0717310:three_prime_UTR 15.0%
!! TTAAAAAATATTCAAAGTGA+AGG - chr5_1:11076561-11076580 Msa0717310:three_prime_UTR 15.0%
!! TAAAAAATATTCAAAGTGAA+GGG - chr5_1:11076562-11076581 Msa0717310:three_prime_UTR 15.0%
!! ATTACAAAAAACTAACTAAT+AGG + chr5_1:11076596-11076615 None:intergenic 15.0%
!!! TATTAGTTAGTTTTTTGTAA+TGG - chr5_1:11076595-11076614 Msa0717310:three_prime_UTR 15.0%
!! AAAAATTAGAAGAAATTTCT+TGG - chr5_1:11076677-11076696 Msa0717310:intron 15.0%
!! ATGAGAGTAAATAAATATAT+AGG - chr5_1:11076741-11076760 Msa0717310:intron 15.0%
!! CAAATCATAATAACATAAAA+AGG + chr5_1:11077490-11077509 None:intergenic 15.0%
!!! ACATTTTCCTAAATTATTAT+AGG + chr5_1:11077865-11077884 None:intergenic 15.0%
!! TGAAATATTACAAAAATGTT+TGG - chr5_1:11078066-11078085 Msa0717310:CDS 15.0%
!!! AATTTTCTTTTCTAAAAGAA+GGG - chr5_1:11078544-11078563 Msa0717310:intron 15.0%
!!! GGAATAGAATAATTTAATTT+TGG - chr5_1:11078565-11078584 Msa0717310:intron 15.0%
!!! TTATCTTTTTTAAATTCTGA+TGG - chr5_1:11079432-11079451 Msa0717310:intron 15.0%
!! TGTCTACTTAAAAAATATTA+TGG - chr5_1:11079700-11079719 Msa0717310:intron 15.0%
!! AAATTAAATTGAAGATTTGA+AGG - chr5_1:11079741-11079760 Msa0717310:intron 15.0%
!!! GTTTTTTTTAACATTAAAAG+GGG - chr5_1:11080081-11080100 Msa0717310:intron 15.0%
!! AGAAATGTAAATATCAAATA+TGG + chr5_1:11080271-11080290 None:intergenic 15.0%
!!! ATATAATTTTAGAGAACTAT+TGG + chr5_1:11080332-11080351 None:intergenic 15.0%
!!! ATATTGAATTTTCTTTTTTC+AGG - chr5_1:11080463-11080482 Msa0717310:intron 15.0%
!!! TTGATATATAGATAGTTTTT+GGG - chr5_1:11080535-11080554 Msa0717310:intron 15.0%
!! CTAAAAATATTAAACTGTTA+AGG - chr5_1:11080615-11080634 Msa0717310:intron 15.0%
!! AAATATAGTAGCATTTAATT+TGG - chr5_1:11080728-11080747 Msa0717310:CDS 15.0%
!!! AAAGGGATATTTATATGTTT+TGG + chr5_1:11071607-11071626 None:intergenic 20.0%
!! TATGTATGAAATATTGAGTA+AGG + chr5_1:11072087-11072106 None:intergenic 20.0%
!! TAGTCAAAATAACAAATCAA+TGG - chr5_1:11072247-11072266 Msa0717310:intron 20.0%
!! GTCTTGAATTTCTAAATAAT+TGG - chr5_1:11072417-11072436 Msa0717310:intron 20.0%
!! CTTGAATTTCTAAATAATTG+GGG - chr5_1:11072419-11072438 Msa0717310:intron 20.0%
!!! TCAAATATATTTTGTTGTAG+AGG - chr5_1:11072588-11072607 Msa0717310:intron 20.0%
!!! TTCTTTTAAAATATCAATGG+AGG - chr5_1:11072827-11072846 Msa0717310:intron 20.0%
!!! GACATTATTTTTCTAATCTA+TGG + chr5_1:11073382-11073401 None:intergenic 20.0%
!!! TTTTGTTTATTTTGTTGAGT+TGG - chr5_1:11073701-11073720 Msa0717310:intron 20.0%
!!! TACAAAATTTTTTTGGGTTT+AGG - chr5_1:11073807-11073826 Msa0717310:intron 20.0%
!!! TTTATGATAGACAAAGTTTT+TGG - chr5_1:11073865-11073884 Msa0717310:intron 20.0%
!!! TTGGATCATATCAAATTTTT+TGG - chr5_1:11073884-11073903 Msa0717310:intron 20.0%
!!! TAATTGAGGGTTTAATTTTT+TGG - chr5_1:11073952-11073971 Msa0717310:intron 20.0%
!!! GAACTTTTATATTTCATTTC+TGG + chr5_1:11073990-11074009 None:intergenic 20.0%
!! AATGGAAAAATTTCAGAAAA+TGG + chr5_1:11074012-11074031 None:intergenic 20.0%
!! TGTTAAATCCAAAAATCAAA+TGG + chr5_1:11074315-11074334 None:intergenic 20.0%
!!! AACAAAAATCTAAAATACCA+AGG + chr5_1:11074578-11074597 None:intergenic 20.0%
!! CATGTTTCTCTATAAATTAT+TGG - chr5_1:11074681-11074700 Msa0717310:intron 20.0%
!! ATATAATGAGATCATTAGAT+AGG + chr5_1:11074857-11074876 None:intergenic 20.0%
!! AATGAATTAATAGTTTAAGG+GGG - chr5_1:11074893-11074912 Msa0717310:three_prime_UTR 20.0%
!!! CATAAATTTTCTGTATCATT+GGG + chr5_1:11075186-11075205 None:intergenic 20.0%
!!! TCATAAATTTTCTGTATCAT+TGG + chr5_1:11075187-11075206 None:intergenic 20.0%
!!! GAAAATTTTGAAATTGGTTT+TGG - chr5_1:11075310-11075329 Msa0717310:three_prime_UTR 20.0%
!! AAATAACACTCAATTAATGA+CGG + chr5_1:11075814-11075833 None:intergenic 20.0%
!!! AAAACTAAGAAGATTTTTGT+TGG - chr5_1:11076188-11076207 Msa0717310:intron 20.0%
!! TAATCAATGAAAATTGCATT+AGG - chr5_1:11076822-11076841 Msa0717310:intron 20.0%
!! CTCTTTGTTCTTATATATTT+GGG - chr5_1:11077140-11077159 Msa0717310:intron 20.0%
!! CAAACATATTTATCCTTTAT+TGG - chr5_1:11077328-11077347 Msa0717310:intron 20.0%
!! ACAAAAGAAAATATACACAA+GGG + chr5_1:11077998-11078017 None:intergenic 20.0%
!! TACAAAAGAAAATATACACA+AGG + chr5_1:11077999-11078018 None:intergenic 20.0%
!! TGCACATTTATATATAGTAA+AGG + chr5_1:11078293-11078312 None:intergenic 20.0%
!!! CAATTTTCTTTTCTAAAAGA+AGG - chr5_1:11078543-11078562 Msa0717310:intron 20.0%
!!! AGAATAATTTAATTTTGGAG+TGG - chr5_1:11078570-11078589 Msa0717310:intron 20.0%
!! ACTTCATCTTATGATAATAA+GGG - chr5_1:11078990-11079009 Msa0717310:intron 20.0%
!!! ATTTTTGATCCATACTATAA+TGG - chr5_1:11079571-11079590 Msa0717310:intron 20.0%
!! ATTTCTATTGTTCTATTCAT+AGG - chr5_1:11079872-11079891 Msa0717310:intron 20.0%
!! TTTGAATGCAAGAAAAAAAA+AGG - chr5_1:11079905-11079924 Msa0717310:intron 20.0%
!!! ACTATCAAATCATTTTTTTC+TGG + chr5_1:11080224-11080243 None:intergenic 20.0%
!! ATATTTACATTTCTACATCA+TGG - chr5_1:11080277-11080296 Msa0717310:intron 20.0%
!!! ATCAGTAGATCTTTTTTAAA+CGG - chr5_1:11080369-11080388 Msa0717310:intron 20.0%
!!! CTTGATATATAGATAGTTTT+TGG - chr5_1:11080534-11080553 Msa0717310:intron 20.0%
!!! TTTTTTATGACAAATAGTAG+AGG + chr5_1:11080590-11080609 None:intergenic 20.0%
!! AACTTCATGAAATGATAATA+TGG - chr5_1:11080761-11080780 Msa0717310:CDS 20.0%
! AATGGTAATTTCATGGAAAA+GGG + chr5_1:11071624-11071643 None:intergenic 25.0%
! AAATGGTAATTTCATGGAAA+AGG + chr5_1:11071625-11071644 None:intergenic 25.0%
!!! AAGTTGTTTTTGAAGAATGA+TGG + chr5_1:11072131-11072150 None:intergenic 25.0%
! AACAAATCAATGGCATAATT+TGG - chr5_1:11072257-11072276 Msa0717310:intron 25.0%
! TAAAAGTGAACGTTTAGAAA+CGG - chr5_1:11072507-11072526 Msa0717310:intron 25.0%
!! ATATGTATACTATTTTCAGC+TGG - chr5_1:11072646-11072665 Msa0717310:intron 25.0%
! AAGTCTTGAAACAAAATTTC+AGG - chr5_1:11072796-11072815 Msa0717310:intron 25.0%
! TCGCTCAAATTAATTATAGA+TGG - chr5_1:11073097-11073116 Msa0717310:three_prime_UTR 25.0%
! CATTATTCGGTTTAGATTTA+TGG + chr5_1:11073332-11073351 None:intergenic 25.0%
! AAATCTAAACCGAATAATGA+TGG - chr5_1:11073333-11073352 Msa0717310:three_prime_UTR 25.0%
!! TAGTTTAGTAGATTGCATTT+TGG + chr5_1:11073364-11073383 None:intergenic 25.0%
! TTTCACATATATATAGGCAA+GGG + chr5_1:11073486-11073505 None:intergenic 25.0%
!! TTTTCACATATATATAGGCA+AGG + chr5_1:11073487-11073506 None:intergenic 25.0%
!!! AGGGTTTAATTTTTTGGTTT+TGG - chr5_1:11073958-11073977 Msa0717310:intron 25.0%
!!! GGGTTTAATTTTTTGGTTTT+GGG - chr5_1:11073959-11073978 Msa0717310:intron 25.0%
! GAAGGAGGTAATAATAAAAA+TGG + chr5_1:11074030-11074049 None:intergenic 25.0%
! GAAACATGAAAGAAGAAAAA+AGG + chr5_1:11074669-11074688 None:intergenic 25.0%
! CTACTATGCATAATCTTATT+TGG - chr5_1:11075044-11075063 Msa0717310:three_prime_UTR 25.0%
!!! TTTTGAAATTGGTTTTGGAT+TGG - chr5_1:11075315-11075334 Msa0717310:three_prime_UTR 25.0%
!!! TTTTTGGTCATTAGTGTTTT+TGG - chr5_1:11075425-11075444 Msa0717310:three_prime_UTR 25.0%
! ATGTACTGCATTTATTTGAA+AGG - chr5_1:11075476-11075495 Msa0717310:three_prime_UTR 25.0%
! TGTACTGCATTTATTTGAAA+GGG - chr5_1:11075477-11075496 Msa0717310:three_prime_UTR 25.0%
!!! TTTGCCGTTTTTTTTAGTTA+TGG - chr5_1:11075599-11075618 Msa0717310:three_prime_UTR 25.0%
! TGCTCCATAACTAAAAAAAA+CGG + chr5_1:11075606-11075625 None:intergenic 25.0%
! AAGACATTGAATTAAATTGC+TGG + chr5_1:11075643-11075662 None:intergenic 25.0%
!!! GAGTGTTATTTACATTCTAT+AGG - chr5_1:11075823-11075842 Msa0717310:intron 25.0%
!! ATTCGGGTTTATTACTTATA+CGG - chr5_1:11075943-11075962 Msa0717310:intron 25.0%
! TGTTATTGATCAAGTTATTC+AGG - chr5_1:11075973-11075992 Msa0717310:intron 25.0%
! AAGAAGGTAAAACTGTAATT+AGG - chr5_1:11076016-11076035 Msa0717310:three_prime_UTR 25.0%
! AGAAGGTAAAACTGTAATTA+GGG - chr5_1:11076017-11076036 Msa0717310:three_prime_UTR 25.0%
!!! TTGATTTGTTTGTTCATATC+AGG - chr5_1:11076115-11076134 Msa0717310:intron 25.0%
! GTTTGTATTGTATGATGATA+CGG - chr5_1:11076340-11076359 Msa0717310:intron 25.0%
! TTGTTCTCATTTCTAATTAC+AGG + chr5_1:11076476-11076495 None:intergenic 25.0%
!!! TAGTTAGTTTTTTGTAATGG+AGG - chr5_1:11076598-11076617 Msa0717310:three_prime_UTR 25.0%
!! TAATGCAGTTGTTGATTATT+AGG - chr5_1:11076889-11076908 Msa0717310:intron 25.0%
!! AATGCAGTTGTTGATTATTA+GGG - chr5_1:11076890-11076909 Msa0717310:intron 25.0%
! TTGGAAAAATCTTGAAATTG+TGG - chr5_1:11076979-11076998 Msa0717310:intron 25.0%
!!! ATTTTTCGATAGATTACATG+AGG - chr5_1:11077021-11077040 Msa0717310:intron 25.0%
! AATGAAAACAAATCCAATGA+AGG + chr5_1:11077049-11077068 None:intergenic 25.0%
! GCTCTTTGTTCTTATATATT+TGG - chr5_1:11077139-11077158 Msa0717310:intron 25.0%
! AGAAAATGCTTATGTAGTTA+TGG - chr5_1:11077282-11077301 Msa0717310:intron 25.0%
! GAAAATGCTTATGTAGTTAT+GGG - chr5_1:11077283-11077302 Msa0717310:intron 25.0%
!!! ATGAATTTTGACAATCGATT+TGG - chr5_1:11077352-11077371 Msa0717310:intron 25.0%
!!! TGAATTTTGACAATCGATTT+GGG - chr5_1:11077353-11077372 Msa0717310:intron 25.0%
! ATAACATAAAAAGGGTAACT+TGG + chr5_1:11077481-11077500 None:intergenic 25.0%
! AAATCTCATCTTTAGCAAAT+GGG + chr5_1:11077552-11077571 None:intergenic 25.0%
! AAAATCTCATCTTTAGCAAA+TGG + chr5_1:11077553-11077572 None:intergenic 25.0%
! GTAGACACCTATAATAATTT+AGG - chr5_1:11077855-11077874 Msa0717310:intron 25.0%
! AAGAGAGTTACTAACAAAAA+TGG + chr5_1:11078132-11078151 None:intergenic 25.0%
!!! GACTTCACTATTTTTCATTT+GGG - chr5_1:11078201-11078220 Msa0717310:intron 25.0%
! GGTTATTCTTTCATTGAAAT+CGG + chr5_1:11078272-11078291 None:intergenic 25.0%
! AAAATGTAGTAAGTGTTTGT+TGG - chr5_1:11078373-11078392 Msa0717310:intron 25.0%
!! ATAGTGATTGTCCAAATTTT+GGG - chr5_1:11078424-11078443 Msa0717310:intron 25.0%
! CATATATGTATCCCAAAATT+TGG + chr5_1:11078438-11078457 None:intergenic 25.0%
!! TTTTTGTGTAATGTAGCTTT+TGG - chr5_1:11078502-11078521 Msa0717310:intron 25.0%
! TTTGTCCAACTAAGTTTAAA+AGG + chr5_1:11078755-11078774 None:intergenic 25.0%
! CACTTCATCTTATGATAATA+AGG - chr5_1:11078989-11079008 Msa0717310:intron 25.0%
! ATAGTTTAATGTGTCTTGAA+GGG - chr5_1:11079038-11079057 Msa0717310:intron 25.0%
! GATTAACTGTAAAAGATGAT+TGG - chr5_1:11079205-11079224 Msa0717310:intron 25.0%
! CAAAAATTGAAACATGCAAT+AGG + chr5_1:11079274-11079293 None:intergenic 25.0%
!!! TTGTTATTCTACATTTTCGT+TGG - chr5_1:11079291-11079310 Msa0717310:intron 25.0%
!! TGTTATTCTACATTTTCGTT+GGG - chr5_1:11079292-11079311 Msa0717310:intron 25.0%
!!! CATTATGTTTTGGATATCTT+TGG - chr5_1:11079358-11079377 Msa0717310:intron 25.0%
!!! GATATGATTTTAGAAGTTTG+TGG - chr5_1:11079474-11079493 Msa0717310:intron 25.0%
! ATGGATCAAAAATAAGAACA+TGG + chr5_1:11079564-11079583 None:intergenic 25.0%
!! AACATCCAGTAACAAATTTT+AGG - chr5_1:11079666-11079685 Msa0717310:intron 25.0%
!! ACATCCAGTAACAAATTTTA+GGG - chr5_1:11079667-11079686 Msa0717310:intron 25.0%
! ATCAGAAAAAACTGATATGT+TGG + chr5_1:11079991-11080010 None:intergenic 25.0%
!! TTGCTGTTGAATTTCATTAT+AGG - chr5_1:11080045-11080064 Msa0717310:intron 25.0%
! TGCTGTTGAATTTCATTATA+GGG - chr5_1:11080046-11080065 Msa0717310:intron 25.0%
! AATTTCATTATAGGGGAATT+TGG - chr5_1:11080054-11080073 Msa0717310:intron 25.0%
!!! TTTTTTCTGGTACATATTAG+TGG + chr5_1:11080211-11080230 None:intergenic 25.0%
!!! ATCTTTTTTAAACGGCAATT+TGG - chr5_1:11080377-11080396 Msa0717310:intron 25.0%
! GACAGATAAAATATACAAAG+TGG - chr5_1:11080418-11080437 Msa0717310:intron 25.0%
!!! AATTTTCTTTTTTCAGGCTT+TGG - chr5_1:11080469-11080488 Msa0717310:intron 25.0%
! TATCTATATATCAAGCATGA+GGG + chr5_1:11080529-11080548 None:intergenic 25.0%
! AAAATAGGCAAACTTGAATT+AGG + chr5_1:11080692-11080711 None:intergenic 25.0%
ACCAAGTAAGGATGAAAATT+TGG - chr5_1:11071464-11071483 Msa0717310:three_prime_UTR 30.0%
CCAAGTAAGGATGAAAATTT+GGG - chr5_1:11071465-11071484 Msa0717310:three_prime_UTR 30.0%
! TTTTAAACACGCCTAAGATA+GGG + chr5_1:11071651-11071670 None:intergenic 30.0%
AATGATGCATGTATGTATCA+TGG + chr5_1:11072179-11072198 None:intergenic 30.0%
CGGAAGACAATACAAAAAAA+TGG - chr5_1:11072527-11072546 Msa0717310:intron 30.0%
! TATACTATTTTCAGCTGGTA+AGG - chr5_1:11072651-11072670 Msa0717310:intron 30.0%
ATAAAGTTTAGGTAAGTGTG+TGG + chr5_1:11072742-11072761 None:intergenic 30.0%
TTAAAAAAATGTCAAGGGTG+TGG + chr5_1:11072859-11072878 None:intergenic 30.0%
ATTTGCGAAAGAAATTGGTT+TGG + chr5_1:11072996-11073015 None:intergenic 30.0%
AAACCAATTTCTTTCGCAAA+TGG - chr5_1:11072995-11073014 Msa0717310:intron 30.0%
AATCATTTCTGCAACCAAAA+GGG - chr5_1:11073246-11073265 Msa0717310:three_prime_UTR 30.0%
AAGAAGTAACAAAATCCTAG+CGG - chr5_1:11073288-11073307 Msa0717310:three_prime_UTR 30.0%
GATTAGAAAAATAATGTCCG+TGG - chr5_1:11073406-11073425 Msa0717310:three_prime_UTR 30.0%
TTCACATATATATAGGCAAG+GGG + chr5_1:11073485-11073504 None:intergenic 30.0%
TGTTCTTTGTGAGATGTTAA+TGG - chr5_1:11073673-11073692 Msa0717310:intron 30.0%
GTTCTTTGTGAGATGTTAAT+GGG - chr5_1:11073674-11073693 Msa0717310:intron 30.0%
TCCTTCAAAATTCACAATTG+CGG - chr5_1:11074044-11074063 Msa0717310:three_prime_UTR 30.0%
CTCGTCAAATAATTGAAACT+TGG - chr5_1:11074201-11074220 Msa0717310:intron 30.0%
TTTCTGATGTAGTGGTTATA+GGG - chr5_1:11074499-11074518 Msa0717310:intron 30.0%
TGGCATTAATTCAACTAGAA+TGG - chr5_1:11074606-11074625 Msa0717310:intron 30.0%
ATGAAAGAAGAAAAAAGGAG+AGG + chr5_1:11074664-11074683 None:intergenic 30.0%
! TCCTTTTCGCATATTTACTT+TGG - chr5_1:11074747-11074766 Msa0717310:intron 30.0%
TCCAAAGTAAATATGCGAAA+AGG + chr5_1:11074751-11074770 None:intergenic 30.0%
AGATTACTGAACTGATAACA+AGG - chr5_1:11074991-11075010 Msa0717310:three_prime_UTR 30.0%
! CATACAACTCTTTCCAATTT+TGG + chr5_1:11075083-11075102 None:intergenic 30.0%
TGAAAAAGAAAGCAAGTTTC+TGG + chr5_1:11075220-11075239 None:intergenic 30.0%
! CCTTTCCATATCATGAATTT+TGG + chr5_1:11075253-11075272 None:intergenic 30.0%
CCAAAATTCATGATATGGAA+AGG - chr5_1:11075250-11075269 Msa0717310:three_prime_UTR 30.0%
ATCAAAGAGCTTTCTATATC+AGG + chr5_1:11075285-11075304 None:intergenic 30.0%
!!! ATTGGTTTTGGATTGGATTA+TGG - chr5_1:11075322-11075341 Msa0717310:three_prime_UTR 30.0%
!!! AGCGATGAGTGTTTTATTTT+TGG - chr5_1:11075409-11075428 Msa0717310:three_prime_UTR 30.0%
TATTTCTCTCATCGTCATTA+TGG + chr5_1:11075689-11075708 None:intergenic 30.0%
! TACACAATTTTCGTGCTTAT+TGG - chr5_1:11075783-11075802 Msa0717310:three_prime_UTR 30.0%
! ACTAAGAAGATTTTTGTTGG+TGG - chr5_1:11076191-11076210 Msa0717310:intron 30.0%
AAGAACTTCTTCTCAAAGTA+TGG - chr5_1:11076422-11076441 Msa0717310:intron 30.0%
AGAACTTCTTCTCAAAGTAT+GGG - chr5_1:11076423-11076442 Msa0717310:intron 30.0%
TCTCATTTCTAATTACAGGA+AGG + chr5_1:11076472-11076491 None:intergenic 30.0%
AAAATATTCAAAGTGAAGGG+AGG - chr5_1:11076565-11076584 Msa0717310:three_prime_UTR 30.0%
AAATATTCAAAGTGAAGGGA+GGG - chr5_1:11076566-11076585 Msa0717310:three_prime_UTR 30.0%
CTAACTATTGAAAGCAATGT+GGG - chr5_1:11076716-11076735 Msa0717310:intron 30.0%
! TGATGTTGATTATCTAGAGT+TGG - chr5_1:11076768-11076787 Msa0717310:intron 30.0%
!!! CGAGCTTTTAAGTTTTTACT+TGG - chr5_1:11076960-11076979 Msa0717310:intron 30.0%
TGAAATTGTGGATAGATATG+CGG - chr5_1:11076991-11077010 Msa0717310:intron 30.0%
TAATGATCAATGTTCATCGA+TGG - chr5_1:11077091-11077110 Msa0717310:intron 30.0%
! AAGATATTGAGAGCTCTAAT+CGG - chr5_1:11077217-11077236 Msa0717310:intron 30.0%
GTCAAAATTCATGCCAATAA+AGG + chr5_1:11077344-11077363 None:intergenic 30.0%
TTAAGAGTGATTACCACTAT+AGG + chr5_1:11077439-11077458 None:intergenic 30.0%
! GATTTTTATGCCGAATTTGT+TGG - chr5_1:11077567-11077586 Msa0717310:intron 30.0%
!! TGTGTTTTTGCACTTAACAT+AGG - chr5_1:11077772-11077791 Msa0717310:intron 30.0%
TTAGTAACTCTCTTTACTGT+AGG - chr5_1:11078138-11078157 Msa0717310:intron 30.0%
TAGTAACTCTCTTTACTGTA+GGG - chr5_1:11078139-11078158 Msa0717310:intron 30.0%
!! GGACTTCACTATTTTTCATT+TGG - chr5_1:11078200-11078219 Msa0717310:intron 30.0%
!!! ACATTTTGAAATGCATGCAT+AGG + chr5_1:11078360-11078379 None:intergenic 30.0%
! GATAGTGATTGTCCAAATTT+TGG - chr5_1:11078423-11078442 Msa0717310:intron 30.0%
ACTTCAAAAAGTGAGCAAAA+TGG + chr5_1:11078470-11078489 None:intergenic 30.0%
!!! AATGTAGCTTTTGGTTTTCA+AGG - chr5_1:11078511-11078530 Msa0717310:intron 30.0%
!!! ATGTAGCTTTTGGTTTTCAA+GGG - chr5_1:11078512-11078531 Msa0717310:intron 30.0%
AAGTGTAAGCATAACTAAGT+TGG + chr5_1:11078652-11078671 None:intergenic 30.0%
AACTTAGTTATGCTTACACT+TGG - chr5_1:11078651-11078670 Msa0717310:intron 30.0%
! GTGTACCTTTTAAACTTAGT+TGG - chr5_1:11078747-11078766 Msa0717310:intron 30.0%
TGTAATAACTTCAGCTAGTA+AGG + chr5_1:11078782-11078801 None:intergenic 30.0%
ATAAGAGTTGAATCACAAGA+AGG - chr5_1:11078874-11078893 Msa0717310:intron 30.0%
GTGATGCTCTAATTGAATAA+GGG + chr5_1:11078915-11078934 None:intergenic 30.0%
AGTGATGCTCTAATTGAATA+AGG + chr5_1:11078916-11078935 None:intergenic 30.0%
CTTATATCAGACAATAAACC+TGG + chr5_1:11078955-11078974 None:intergenic 30.0%
CATAGTTTAATGTGTCTTGA+AGG - chr5_1:11079037-11079056 Msa0717310:intron 30.0%
GTTGGAATACAATGAAATTG+AGG + chr5_1:11079084-11079103 None:intergenic 30.0%
!! TGTTGTTCGTTTTATTGCAA+AGG - chr5_1:11079145-11079164 Msa0717310:intron 30.0%
TCGATTTCAATTTCAATCGA+TGG + chr5_1:11079187-11079206 None:intergenic 30.0%
! ACTGTAAAAGATGATTGGTT+TGG - chr5_1:11079210-11079229 Msa0717310:intron 30.0%
! TTGGTTGCATGTTTTCAAAA+AGG - chr5_1:11079328-11079347 Msa0717310:intron 30.0%
! TGGTTGCATGTTTTCAAAAA+GGG - chr5_1:11079329-11079348 Msa0717310:intron 30.0%
! AGGGTCTTTTCATTATGTTT+TGG - chr5_1:11079348-11079367 Msa0717310:intron 30.0%
!! TGTTTTGGATATCTTTGGTT+AGG - chr5_1:11079363-11079382 Msa0717310:intron 30.0%
AAATAAGAACATGGAGAAGA+TGG + chr5_1:11079555-11079574 None:intergenic 30.0%
!! GGTCATTTTCCATTATAGTA+TGG + chr5_1:11079583-11079602 None:intergenic 30.0%
GCTCAAGCTAAAAATTTAAG+AGG + chr5_1:11079604-11079623 None:intergenic 30.0%
!! CTTTCCCTAAAATTTGTTAC+TGG + chr5_1:11079674-11079693 None:intergenic 30.0%
!! CAGTAACAAATTTTAGGGAA+AGG - chr5_1:11079672-11079691 Msa0717310:intron 30.0%
!! GATGCTACATTGTATTTTAG+AGG - chr5_1:11079812-11079831 Msa0717310:intron 30.0%
AAAAAAAAGGCGACAATCTT+TGG - chr5_1:11079918-11079937 Msa0717310:intron 30.0%
GCTGTTGAATTTCATTATAG+GGG - chr5_1:11080047-11080066 Msa0717310:intron 30.0%
AAGAAACACCTGACAAAAAA+TGG - chr5_1:11080184-11080203 Msa0717310:intron 30.0%
! TGATTTGATAGTAGCATTCT+TGG - chr5_1:11080232-11080251 Msa0717310:intron 30.0%
! GATTTGATAGTAGCATTCTT+GGG - chr5_1:11080233-11080252 Msa0717310:intron 30.0%
CTATCTATATATCAAGCATG+AGG + chr5_1:11080530-11080549 None:intergenic 30.0%
!!! TAGATAGTTTTTGGGATGAA+TGG - chr5_1:11080543-11080562 Msa0717310:intron 30.0%
AGTACATACGATGCAAAAAT+AGG + chr5_1:11080707-11080726 None:intergenic 30.0%
GTTTAGAAGCTTACCAAGTA+AGG - chr5_1:11071452-11071471 Msa0717310:three_prime_UTR 35.0%
! CCCAAATTTTCATCCTTACT+TGG + chr5_1:11071468-11071487 None:intergenic 35.0%
GTAAGGATGAAAATTTGGGA+AGG - chr5_1:11071469-11071488 Msa0717310:three_prime_UTR 35.0%
GATGAAAATTTGGGAAGGAT+TGG - chr5_1:11071474-11071493 Msa0717310:three_prime_UTR 35.0%
TTTCCTTTCTCTCTCTAGAT+GGG + chr5_1:11071563-11071582 None:intergenic 35.0%
! TTTTCCTTTCTCTCTCTAGA+TGG + chr5_1:11071564-11071583 None:intergenic 35.0%
GGGGTAAAATGGTAATTTCA+TGG + chr5_1:11071631-11071650 None:intergenic 35.0%
! TACCATTTTACCCCTATCTT+AGG - chr5_1:11071637-11071656 Msa0717310:three_prime_UTR 35.0%
TTTAAACACGCCTAAGATAG+GGG + chr5_1:11071650-11071669 None:intergenic 35.0%
!! GTTTTAAACACGCCTAAGAT+AGG + chr5_1:11071652-11071671 None:intergenic 35.0%
TATTACATGTCAGCATAACG+CGG + chr5_1:11071691-11071710 None:intergenic 35.0%
AGAAACCGAACCAAACTAAT+CGG - chr5_1:11071901-11071920 Msa0717310:intron 35.0%
!! TGATGGATGCATGAATTTTG+TGG + chr5_1:11072114-11072133 None:intergenic 35.0%
ATCAAGAGTCATGCTAACTT+AGG + chr5_1:11072348-11072367 None:intergenic 35.0%
TGTAGAGGATCAAGTCTATT+TGG - chr5_1:11072603-11072622 Msa0717310:intron 35.0%
GATCAAGTCTATTTGGTTGT+AGG - chr5_1:11072610-11072629 Msa0717310:intron 35.0%
TGACCATTTGCGAAAGAAAT+TGG + chr5_1:11073001-11073020 None:intergenic 35.0%
! ATCAGTGACTTGTCAAAATG+TGG + chr5_1:11073144-11073163 None:intergenic 35.0%
CAATCATTTCTGCAACCAAA+AGG - chr5_1:11073245-11073264 Msa0717310:three_prime_UTR 35.0%
ATCATTTCTGCAACCAAAAG+GGG - chr5_1:11073247-11073266 Msa0717310:three_prime_UTR 35.0%
!!! TTTCAAGTTTGTACCCCTTT+TGG + chr5_1:11073263-11073282 None:intergenic 35.0%
! TAAACCGAATAATGATGGAG+TGG - chr5_1:11073338-11073357 Msa0717310:three_prime_UTR 35.0%
! AAATTACCATTTTGCCCTTG+AGG - chr5_1:11073429-11073448 Msa0717310:three_prime_UTR 35.0%
! AATTACCATTTTGCCCTTGA+GGG - chr5_1:11073430-11073449 Msa0717310:three_prime_UTR 35.0%
AAAGAAAAGGGTGAGAGAAA+CGG - chr5_1:11073530-11073549 Msa0717310:intron 35.0%
!! GCAATTGTGAATTTTGAAGG+AGG + chr5_1:11074045-11074064 None:intergenic 35.0%
! ACCGCAATTGTGAATTTTGA+AGG + chr5_1:11074048-11074067 None:intergenic 35.0%
AACAATTTCGCTAATCTAGC+AGG + chr5_1:11074091-11074110 None:intergenic 35.0%
!! TTAAGAAGCTTCTGGAACTT+CGG + chr5_1:11074115-11074134 None:intergenic 35.0%
! TCTTAAGCGTGAAGTGTTTA+AGG - chr5_1:11074129-11074148 Msa0717310:intron 35.0%
! AATAGAGTCACTCTGTTTCT+AGG - chr5_1:11074236-11074255 Msa0717310:intron 35.0%
!! TCAGTATTGGTGTTATAGCA+AGG - chr5_1:11074263-11074282 Msa0717310:intron 35.0%
!! CAGTATTGGTGTTATAGCAA+GGG - chr5_1:11074264-11074283 Msa0717310:intron 35.0%
AGGGTTAAGGAACTATTCAA+AGG - chr5_1:11074283-11074302 Msa0717310:intron 35.0%
!! GGTCACAACCATTTGATTTT+TGG - chr5_1:11074304-11074323 Msa0717310:intron 35.0%
TTTAACACTTTCCTGCCAAA+AGG - chr5_1:11074328-11074347 Msa0717310:intron 35.0%
! GACATTTTGCATCAAACAGA+AGG - chr5_1:11074355-11074374 Msa0717310:intron 35.0%
ACATGTACTTTCTGATGTAG+TGG - chr5_1:11074491-11074510 Msa0717310:intron 35.0%
CTTTCTGATGTAGTGGTTAT+AGG - chr5_1:11074498-11074517 Msa0717310:intron 35.0%
TTCTGATGTAGTGGTTATAG+GGG - chr5_1:11074500-11074519 Msa0717310:intron 35.0%
CGCATATTTACTTTGGATTG+AGG - chr5_1:11074754-11074773 Msa0717310:intron 35.0%
! ACTTTGGATTGAGGTTGATT+CGG - chr5_1:11074763-11074782 Msa0717310:intron 35.0%
!! ATTGTTGCGCTTTGAAACTA+TGG - chr5_1:11074824-11074843 Msa0717310:three_prime_UTR 35.0%
!! TCTTATTTGGTGCCACATTT+AGG - chr5_1:11075057-11075076 Msa0717310:three_prime_UTR 35.0%
!! TTCCAATTTTGGCCTAAATG+TGG + chr5_1:11075072-11075091 None:intergenic 35.0%
CGTGTCCAAAATTCATGATA+TGG - chr5_1:11075245-11075264 Msa0717310:three_prime_UTR 35.0%
TATTGATGTATCCCAAAGCT+AGG + chr5_1:11075348-11075367 None:intergenic 35.0%
! TTCTTTGTTGTGATTCAAGC+AGG - chr5_1:11075862-11075881 Msa0717310:intron 35.0%
!! ATCAGTTTGCATTTTGACCA+TGG + chr5_1:11075904-11075923 None:intergenic 35.0%
TCACATCATCAATGACAAGA+AGG - chr5_1:11076000-11076019 Msa0717310:three_prime_UTR 35.0%
AACCAAGAGGACTATTACAA+AGG - chr5_1:11076142-11076161 Msa0717310:intron 35.0%
ACCAAGAGGACTATTACAAA+GGG - chr5_1:11076143-11076162 Msa0717310:intron 35.0%
GAACTTCTTCTCAAAGTATG+GGG - chr5_1:11076424-11076443 Msa0717310:intron 35.0%
!! TCTAATTACAGGAAGGTGTT+CGG + chr5_1:11076465-11076484 None:intergenic 35.0%
AATATTCAAAGTGAAGGGAG+GGG - chr5_1:11076567-11076586 Msa0717310:three_prime_UTR 35.0%
TGCTGAAGCAAAGAGTAATT+AGG - chr5_1:11076643-11076662 Msa0717310:intron 35.0%
GCTAACTATTGAAAGCAATG+TGG - chr5_1:11076715-11076734 Msa0717310:intron 35.0%
TAAAGAGCTTGCAAATATGC+AGG - chr5_1:11076792-11076811 Msa0717310:intron 35.0%
! ATTACATGAGGTACCTTCAT+TGG - chr5_1:11077033-11077052 Msa0717310:intron 35.0%
! AGATATTGAGAGCTCTAATC+GGG - chr5_1:11077218-11077237 Msa0717310:intron 35.0%
TCTAATCGGGCATAAGAATT+TGG - chr5_1:11077231-11077250 Msa0717310:intron 35.0%
! AGCATTTTCTTCGTCTTCAT+AGG + chr5_1:11077272-11077291 None:intergenic 35.0%
ATGCTTATGTAGTTATGGGA+CGG - chr5_1:11077287-11077306 Msa0717310:intron 35.0%
ATCAACAGTTCTGTCACTAA+TGG + chr5_1:11077414-11077433 None:intergenic 35.0%
GAACTGTTGATATCCTATAG+TGG - chr5_1:11077423-11077442 Msa0717310:intron 35.0%
!!! TTTTATGCCGAATTTGTTGG+TGG - chr5_1:11077570-11077589 Msa0717310:intron 35.0%
!! TTTATGCCGAATTTGTTGGT+GGG - chr5_1:11077571-11077590 Msa0717310:intron 35.0%
TTTGCTTTGTAATGCACGTT+TGG - chr5_1:11077604-11077623 Msa0717310:intron 35.0%
TTGCTTTGTAATGCACGTTT+GGG - chr5_1:11077605-11077624 Msa0717310:intron 35.0%
TATGTGTTTGTGTTTGAGTC+TGG - chr5_1:11077707-11077726 Msa0717310:intron 35.0%
ATGTGTTTGTGTTTGAGTCT+GGG - chr5_1:11077708-11077727 Msa0717310:intron 35.0%
! AGTGTCTGTATCAAAGTATC+CGG + chr5_1:11077830-11077849 None:intergenic 35.0%
TAACCATGTCAGTATTGTGT+CGG - chr5_1:11077894-11077913 Msa0717310:three_prime_UTR 35.0%
! ACTCCATCAATTTGAAGTGT+CGG - chr5_1:11077955-11077974 Msa0717310:three_prime_UTR 35.0%
CACAAGGGTAACAAACTATA+TGG + chr5_1:11077983-11078002 None:intergenic 35.0%
! CTTATCTCATCACTGTCTTT+TGG + chr5_1:11078859-11078878 None:intergenic 35.0%
!! TCACAAGAAGGTGGATTAAA+TGG - chr5_1:11078886-11078905 Msa0717310:intron 35.0%
CTATGTTGTCAATACAAACC+AGG - chr5_1:11078934-11078953 Msa0717310:intron 35.0%
CAATTTCAATCGATGGAATG+AGG + chr5_1:11079180-11079199 None:intergenic 35.0%
!!! CATTTTCGTTGGGTTTTGTT+TGG - chr5_1:11079302-11079321 Msa0717310:intron 35.0%
GATTTCTGAGTCAACTTCAA+TGG - chr5_1:11079496-11079515 Msa0717310:intron 35.0%
TTGGATCACAACTTTCTTAC+AGG + chr5_1:11079529-11079548 None:intergenic 35.0%
TTGTTACTGGATGTTGCAAA+CGG + chr5_1:11079661-11079680 None:intergenic 35.0%
!! AAAGACGTTGATTCCTCTAA+TGG - chr5_1:11079781-11079800 Msa0717310:intron 35.0%
GCATCAAAATGAACCATTAG+AGG + chr5_1:11079797-11079816 None:intergenic 35.0%
!!! TTAGTGGACCATTTTTTGTC+AGG + chr5_1:11080195-11080214 None:intergenic 35.0%
TTGGATCAGTAGATCATAAC+AGG - chr5_1:11080396-11080415 Msa0717310:intron 35.0%
TGTTAAGGTTAAGACACATG+AGG - chr5_1:11080630-11080649 Msa0717310:intron 35.0%
ATAGGCAAACTTGAATTAGG+TGG + chr5_1:11080689-11080708 None:intergenic 35.0%
GAAAATTTGGGAAGGATTGG+TGG - chr5_1:11071477-11071496 Msa0717310:three_prime_UTR 40.0%
AAACCCATCTAGAGAGAGAA+AGG - chr5_1:11071557-11071576 Msa0717310:three_prime_UTR 40.0%
ATTACATGTCAGCATAACGC+GGG + chr5_1:11071690-11071709 None:intergenic 40.0%
AAATACCGATACTGACAAGC+AGG - chr5_1:11071770-11071789 Msa0717310:intron 40.0%
AACATCCTGCTTGTCAGTAT+CGG + chr5_1:11071778-11071797 None:intergenic 40.0%
CAAGCAGGATGTTACAGTAA+CGG - chr5_1:11071785-11071804 Msa0717310:intron 40.0%
AGGATGTTACAGTAACGGTT+CGG - chr5_1:11071790-11071809 Msa0717310:intron 40.0%
! CGATGAAGATTTCATCGGTT+CGG + chr5_1:11071845-11071864 None:intergenic 40.0%
CGAACCGATGAAATCTTCAT+CGG - chr5_1:11071843-11071862 Msa0717310:intron 40.0%
CGAACCGATGAAGATTTCAT+CGG + chr5_1:11071850-11071869 None:intergenic 40.0%
! CGATGAAATCTTCATCGGTT+CGG - chr5_1:11071848-11071867 Msa0717310:intron 40.0%
!! AAATCTTCATCGGTTCGGAT+TGG - chr5_1:11071853-11071872 Msa0717310:intron 40.0%
!! CCAAACCGATTAGTTTGGTT+CGG + chr5_1:11071909-11071928 None:intergenic 40.0%
!! CCAAACTAATCGGTTTGGTT+CGG - chr5_1:11071911-11071930 Msa0717310:intron 40.0%
!! TTTGGATTGGTTCGGTTGAT+CGG - chr5_1:11071934-11071953 Msa0717310:intron 40.0%
!! TTTTGAAGGCTCATCACGTT+AGG + chr5_1:11072719-11072738 None:intergenic 40.0%
!!! AGGTAAGTGTGTGGTTTTGA+AGG + chr5_1:11072733-11072752 None:intergenic 40.0%
!! GCGAAAGAAATTGGTTTGGT+TGG + chr5_1:11072992-11073011 None:intergenic 40.0%
TTGGCCACTCCATCATTATT+CGG + chr5_1:11073345-11073364 None:intergenic 40.0%
GGGCAAAATGGTAATTTCCA+CGG + chr5_1:11073426-11073445 None:intergenic 40.0%
! ATTACCATTTTGCCCTTGAG+GGG - chr5_1:11073431-11073450 Msa0717310:three_prime_UTR 40.0%
AAGAAAAGGGTGAGAGAAAC+GGG - chr5_1:11073531-11073550 Msa0717310:intron 40.0%
AACCTGAGAAATAGAGCAAC+CGG + chr5_1:11073616-11073635 None:intergenic 40.0%
AAATACCTGGACATGAGCTA+TGG + chr5_1:11073782-11073801 None:intergenic 40.0%
! TGAAGTGTTTAAGGCGAAAC+CGG - chr5_1:11074138-11074157 Msa0717310:intron 40.0%
!! GTTTCTAGGACTGTCAGTAT+TGG - chr5_1:11074250-11074269 Msa0717310:intron 40.0%
!! TGGTGTTATAGCAAGGGTTA+AGG - chr5_1:11074270-11074289 Msa0717310:intron 40.0%
AAGACTCCATGGTTTCTAAC+AGG - chr5_1:11074538-11074557 Msa0717310:intron 40.0%
AAGCTACCTGTTAGAAACCA+TGG + chr5_1:11074547-11074566 None:intergenic 40.0%
! AGGTAGCTTATGCTTTTCCT+TGG - chr5_1:11074558-11074577 Msa0717310:intron 40.0%
!! TGCGCTTTGAAACTATGGTT+TGG - chr5_1:11074829-11074848 Msa0717310:three_prime_UTR 40.0%
!! GCGCTTTGAAACTATGGTTT+GGG - chr5_1:11074830-11074849 Msa0717310:three_prime_UTR 40.0%
GATAACAAGGCTGATCATGA+TGG - chr5_1:11075004-11075023 Msa0717310:three_prime_UTR 40.0%
TGCCACATTTAGGCCAAAAT+TGG - chr5_1:11075067-11075086 Msa0717310:three_prime_UTR 40.0%
ATTGGATTATGGCCTAGCTT+TGG - chr5_1:11075333-11075352 Msa0717310:three_prime_UTR 40.0%
! TTGGATTATGGCCTAGCTTT+GGG - chr5_1:11075334-11075353 Msa0717310:three_prime_UTR 40.0%
TCATTATGGAGTGAACTTGC+TGG + chr5_1:11075675-11075694 None:intergenic 40.0%
!! TGTTGATGGTCGAGATAGAA+AGG - chr5_1:11075720-11075739 Msa0717310:three_prime_UTR 40.0%
GATAGTCTGCTACATTACCA+TGG - chr5_1:11075884-11075903 Msa0717310:intron 40.0%
ACCCTTTGTAATAGTCCTCT+TGG + chr5_1:11076147-11076166 None:intergenic 40.0%
ATTCCAGCAACTGTATCTGA+AGG - chr5_1:11076215-11076234 Msa0717310:three_prime_UTR 40.0%
AAACCTTCAGATACAGTTGC+TGG + chr5_1:11076221-11076240 None:intergenic 40.0%
AGCTTATTGTATGCTTGCCT+TGG - chr5_1:11076378-11076397 Msa0717310:intron 40.0%
GCTTATTGTATGCTTGCCTT+GGG - chr5_1:11076379-11076398 Msa0717310:intron 40.0%
! TCATCTGAAACACAAACCCA+AGG + chr5_1:11076398-11076417 None:intergenic 40.0%
AATGAGAACAAGTCGACATG+AGG - chr5_1:11076485-11076504 Msa0717310:intron 40.0%
AATTGCATTAGGTGCAGCTA+AGG - chr5_1:11076833-11076852 Msa0717310:intron 40.0%
GACAACAGCAATTGCTATAG+AGG - chr5_1:11077177-11077196 Msa0717310:intron 40.0%
TTATGTAGTTATGGGACGGA+GGG - chr5_1:11077291-11077310 Msa0717310:intron 40.0%
AACAGTTCTGTCACTAATGG+AGG + chr5_1:11077411-11077430 None:intergenic 40.0%
ATACCGACACAATACTGACA+TGG + chr5_1:11077900-11077919 None:intergenic 40.0%
! GTCGGTATTGAAATGAACAC+CGG - chr5_1:11077912-11077931 Msa0717310:three_prime_UTR 40.0%
TGGCAAGCTTGAGATGAAAT+CGG - chr5_1:11078179-11078198 Msa0717310:intron 40.0%
ATCTTCTTCTCTGCAAGAGA+GGG - chr5_1:11078224-11078243 Msa0717310:intron 40.0%
TTGTTGGACGCTGAAACAAT+TGG - chr5_1:11078389-11078408 Msa0717310:intron 40.0%
AGAGTTGAATCACAAGAAGG+TGG - chr5_1:11078877-11078896 Msa0717310:intron 40.0%
ACGGAAACAACTCTGATAGT+TGG + chr5_1:11079102-11079121 None:intergenic 40.0%
! CTCTGGAAGAAGGTAACAAA+CGG + chr5_1:11079121-11079140 None:intergenic 40.0%
AAAACGAACAACACGTTCTC+TGG + chr5_1:11079138-11079157 None:intergenic 40.0%
!!! GTTGGGTTTTGTTTGGTCTT+TGG - chr5_1:11079309-11079328 Msa0717310:intron 40.0%
TTTGCTACACCTGTGTTTGA+TGG - chr5_1:11079396-11079415 Msa0717310:intron 40.0%
AGATTCATGCCATCAAACAC+AGG + chr5_1:11079408-11079427 None:intergenic 40.0%
AACATGGAGAAGATGGTACT+TGG + chr5_1:11079548-11079567 None:intergenic 40.0%
AGAGATGGATCAAAACACAG+GGG + chr5_1:11079957-11079976 None:intergenic 40.0%
CAGAGATGGATCAAAACACA+GGG + chr5_1:11079958-11079977 None:intergenic 40.0%
ACAGAGATGGATCAAAACAC+AGG + chr5_1:11079959-11079978 None:intergenic 40.0%
ACTTTGATCTACCTCACTTG+TGG - chr5_1:11080015-11080034 Msa0717310:intron 40.0%
GCAAATAAACACCACAAGTG+AGG + chr5_1:11080029-11080048 None:intergenic 40.0%
TATATCAAGCATGAGGGAAG+TGG + chr5_1:11080523-11080542 None:intergenic 40.0%
! AATTTGGGAAGGATTGGTGG+AGG - chr5_1:11071480-11071499 Msa0717310:three_prime_UTR 45.0%
CGCCTAAGATAGGGGTAAAA+TGG + chr5_1:11071642-11071661 None:intergenic 45.0%
!! GTTACAGTAACGGTTCGGTT+TGG - chr5_1:11071795-11071814 Msa0717310:intron 45.0%
!! AGTAACGGTTCGGTTTGGAT+TGG - chr5_1:11071800-11071819 Msa0717310:intron 45.0%
!! TTCATCGGTTCGGATTGGTT+CGG - chr5_1:11071858-11071877 Msa0717310:intron 45.0%
CCGAACCAAACTAATCGGTT+TGG - chr5_1:11071906-11071925 Msa0717310:intron 45.0%
! CCGAACCAAACCGATTAGTT+TGG + chr5_1:11071914-11071933 None:intergenic 45.0%
!! CTAATCGGTTTGGTTCGGTT+TGG - chr5_1:11071916-11071935 Msa0717310:intron 45.0%
!! TGGTTCGGTTTGGATTGGTT+CGG - chr5_1:11071926-11071945 Msa0717310:intron 45.0%
GACAAGTCACTGATGAGACT+AGG - chr5_1:11073150-11073169 Msa0717310:three_prime_UTR 45.0%
AAGTCACTGATGAGACTAGG+AGG - chr5_1:11073153-11073172 Msa0717310:three_prime_UTR 45.0%
! CTTTGTTATGCTTCTCCGCT+AGG + chr5_1:11073306-11073325 None:intergenic 45.0%
! TTACCATTTTGCCCTTGAGG+GGG - chr5_1:11073432-11073451 Msa0717310:three_prime_UTR 45.0%
TTACCAAAATGCCCCCTCAA+GGG + chr5_1:11073446-11073465 None:intergenic 45.0%
TTTACCAAAATGCCCCCTCA+AGG + chr5_1:11073447-11073466 None:intergenic 45.0%
TGAGAGAAACGGGAGAAGAA+GGG - chr5_1:11073541-11073560 Msa0717310:intron 45.0%
ACGGAAAGGGAGGAGAAAAA+CGG - chr5_1:11073579-11073598 Msa0717310:intron 45.0%
AGAAATAGAGCAACCGGAGT+CGG + chr5_1:11073610-11073629 None:intergenic 45.0%
TGGACATGAGCTATGGCTAT+GGG + chr5_1:11073775-11073794 None:intergenic 45.0%
GCGGTGTTCGATTGAATTTC+CGG - chr5_1:11074063-11074082 Msa0717310:intron 45.0%
TTCGCTAATCTAGCAGGTTC+CGG + chr5_1:11074085-11074104 None:intergenic 45.0%
CTTCACGCTTAAGAAGCTTC+TGG + chr5_1:11074123-11074142 None:intergenic 45.0%
ATAGGACGTGTAGTTGAAGC+TGG - chr5_1:11074175-11074194 Msa0717310:intron 45.0%
! TGCAAAATGTCCGCTCCTTT+TGG + chr5_1:11074346-11074365 None:intergenic 45.0%
GAAACCATGGAGTCTTCAAG+TGG + chr5_1:11074534-11074553 None:intergenic 45.0%
AGGAGAGGAAATGACAGATG+TGG + chr5_1:11074649-11074668 None:intergenic 45.0%
GTAATAAACCCGAATCCTCG+AGG + chr5_1:11075938-11075957 None:intergenic 45.0%
TGTGGATAGATATGCGGTTG+TGG - chr5_1:11076997-11077016 Msa0717310:intron 45.0%
CTTATGTAGTTATGGGACGG+AGG - chr5_1:11077290-11077309 Msa0717310:intron 45.0%
GGTTAAGTGTGTGAAGACTC+TGG - chr5_1:11077374-11077393 Msa0717310:intron 45.0%
AAGCGACCCACCAACAAATT+CGG + chr5_1:11077580-11077599 None:intergenic 45.0%
!! AATTTGTTGGTGGGTCGCTT+GGG - chr5_1:11077580-11077599 Msa0717310:intron 45.0%
! TGAGTCTGGGATAGTTAAGC+TGG - chr5_1:11077721-11077740 Msa0717310:intron 45.0%
AAATGAACACCGGCGCATAT+CGG - chr5_1:11077922-11077941 Msa0717310:three_prime_UTR 45.0%
! GCACCGACACTTCAAATTGA+TGG + chr5_1:11077961-11077980 None:intergenic 45.0%
GGGTCTAATATGACATTGCG+TGG - chr5_1:11078159-11078178 Msa0717310:intron 45.0%
GATCTTCTTCTCTGCAAGAG+AGG - chr5_1:11078223-11078242 Msa0717310:intron 45.0%
CTGCAAGAGAGGGATTCATT+TGG - chr5_1:11078234-11078253 Msa0717310:intron 45.0%
GCTCAGCAGTATGAGTTTGA+TGG - chr5_1:11078598-11078617 Msa0717310:intron 45.0%
AATGCAGCACAAGCAAGTGA+AGG - chr5_1:11078823-11078842 Msa0717310:intron 45.0%
ATGCAGCACAAGCAAGTGAA+GGG - chr5_1:11078824-11078843 Msa0717310:intron 45.0%
AAGGGCAGAGATTGCAACTT+TGG - chr5_1:11079008-11079027 Msa0717310:intron 45.0%
AGGGCAGAGATTGCAACTTT+GGG - chr5_1:11079009-11079028 Msa0717310:intron 45.0%
! ACAACACGTTCTCTGGAAGA+AGG + chr5_1:11079131-11079150 None:intergenic 45.0%
TCAAAACACAGGGGAACATC+TGG + chr5_1:11079948-11079967 None:intergenic 45.0%
TTGGAGCTGAAACACAGAGA+TGG + chr5_1:11079972-11079991 None:intergenic 45.0%
! TTTCAGGCTTTGGCAGATGA+TGG - chr5_1:11080479-11080498 Msa0717310:intron 45.0%
!!! TTATTTTTACAAAATTTTTT+TGG - chr5_1:11073800-11073819 Msa0717310:intron 5.0%
!!! TATTTTTACAAAATTTTTTT+GGG - chr5_1:11073801-11073820 Msa0717310:intron 5.0%
TTGGTGGAGGAGAAGAGAGA+TGG - chr5_1:11071493-11071512 Msa0717310:three_prime_UTR 50.0%
TGGTGGAGGAGAAGAGAGAT+GGG - chr5_1:11071494-11071513 Msa0717310:three_prime_UTR 50.0%
! GTTTTCTCCTCCCTCTCTCT+AGG + chr5_1:11071530-11071549 None:intergenic 50.0%
!! CGGTTTGGTTCGGTTTGGAT+TGG - chr5_1:11071921-11071940 Msa0717310:intron 50.0%
GTGAGAGAAACGGGAGAAGA+AGG - chr5_1:11073540-11073559 Msa0717310:intron 50.0%
GAGAGAAACGGGAGAAGAAG+GGG - chr5_1:11073542-11073561 Msa0717310:intron 50.0%
AGAGAAACGGGAGAAGAAGG+GGG - chr5_1:11073543-11073562 Msa0717310:intron 50.0%
GAAAGGGAGGAGAAAAACGG+CGG - chr5_1:11073582-11073601 Msa0717310:intron 50.0%
! CTCCGGTTGCTCTATTTCTC+AGG - chr5_1:11073611-11073630 Msa0717310:intron 50.0%
!! GAGACGATGGTGTTGATGCA+GGG + chr5_1:11073751-11073770 None:intergenic 50.0%
!! AGAGACGATGGTGTTGATGC+AGG + chr5_1:11073752-11073771 None:intergenic 50.0%
TATGGCTATGGGAGAGACGA+TGG + chr5_1:11073764-11073783 None:intergenic 50.0%
CTGGACATGAGCTATGGCTA+TGG + chr5_1:11073776-11073795 None:intergenic 50.0%
CATAGCCATAGCTCATGTCC+AGG - chr5_1:11073774-11073793 Msa0717310:intron 50.0%
TAAGGCGAAACCGGCGTTAT+TGG - chr5_1:11074147-11074166 Msa0717310:intron 50.0%
CCTATCAACGCCAATAACGC+CGG + chr5_1:11074160-11074179 None:intergenic 50.0%
CACTTTCCTGCCAAAAGGAG+CGG - chr5_1:11074333-11074352 Msa0717310:intron 50.0%
! AAATGTCCGCTCCTTTTGGC+AGG + chr5_1:11074342-11074361 None:intergenic 50.0%
TGCTCCACTTGAAGACTCCA+TGG - chr5_1:11074527-11074546 Msa0717310:intron 50.0%
ACGATGAGAGAAATAGCGCG+TGG - chr5_1:11075694-11075713 Msa0717310:three_prime_UTR 50.0%
ATAGCGCGTGGAGTTGTTGA+TGG - chr5_1:11075706-11075725 Msa0717310:three_prime_UTR 50.0%
TGATTGATATGCCGTCCTCG+AGG - chr5_1:11075920-11075939 Msa0717310:intron 50.0%
ATATGCCGTCCTCGAGGATT+CGG - chr5_1:11075926-11075945 Msa0717310:intron 50.0%
TAAACCCGAATCCTCGAGGA+CGG + chr5_1:11075934-11075953 None:intergenic 50.0%
!! GAATTTGTTGGTGGGTCGCT+TGG - chr5_1:11077579-11077598 Msa0717310:intron 50.0%
AATGAACACCGGCGCATATC+GGG - chr5_1:11077923-11077942 Msa0717310:three_prime_UTR 50.0%
ACAACGACTTCGCTTGCTTG+AGG + chr5_1:11079626-11079645 None:intergenic 50.0%
CTGGATGTTGCAAACGGACA+AGG + chr5_1:11079655-11079674 None:intergenic 50.0%
TGAGGACTGCAGCTGCATTA+TGG - chr5_1:11080648-11080667 Msa0717310:intron 50.0%
GGTGGAGGAGAAGAGAGATG+GGG - chr5_1:11071495-11071514 Msa0717310:three_prime_UTR 55.0%
GCGTGAGCTTCCTAGAGAGA+GGG - chr5_1:11071517-11071536 Msa0717310:three_prime_UTR 55.0%
TGAGCTTCCTAGAGAGAGGG+AGG - chr5_1:11071520-11071539 Msa0717310:three_prime_UTR 55.0%
!! CTATCTCTGGGACGATCGAC+TGG - chr5_1:11071745-11071764 Msa0717310:intron 55.0%
ATGCCCCCTCAAGGGCAAAA+TGG + chr5_1:11073438-11073457 None:intergenic 55.0%
!!! TTGCCCTTGAGGGGGCATTT+TGG - chr5_1:11073440-11073459 Msa0717310:three_prime_UTR 55.0%
AGAAGAAGGGGGAACGCGAA+CGG - chr5_1:11073554-11073573 Msa0717310:intron 55.0%
AACGCGAACGGGAACGGAAA+GGG - chr5_1:11073566-11073585 Msa0717310:intron 55.0%
!! CCGGCGTTATTGGCGTTGAT+AGG - chr5_1:11074157-11074176 Msa0717310:intron 55.0%
GGACGTGTAGTTGAAGCTGG+TGG - chr5_1:11074178-11074197 Msa0717310:intron 55.0%
TATGCCGTCCTCGAGGATTC+GGG - chr5_1:11075927-11075946 Msa0717310:intron 55.0%
! GGTGTTCGGCAGCTTGTTCT+GGG + chr5_1:11076451-11076470 None:intergenic 55.0%
! AGGTGTTCGGCAGCTTGTTC+TGG + chr5_1:11076452-11076471 None:intergenic 55.0%
TTTGAGTGCCCGATATGCGC+CGG + chr5_1:11077934-11077953 None:intergenic 55.0%
GGCGTGAGCTTCCTAGAGAG+AGG - chr5_1:11071516-11071535 Msa0717310:three_prime_UTR 60.0%
GAAGAAGGGGGAACGCGAAC+GGG - chr5_1:11073555-11073574 Msa0717310:intron 60.0%
GAACGCGAACGGGAACGGAA+AGG - chr5_1:11073565-11073584 Msa0717310:intron 60.0%
AGGGGGAACGCGAACGGGAA+CGG - chr5_1:11073560-11073579 Msa0717310:intron 65.0%
GCGAACGGGAACGGAAAGGG+AGG - chr5_1:11073569-11073588 Msa0717310:intron 65.0%
!! AAAAACGGCGGCGCCGACTC+CGG - chr5_1:11073594-11073613 Msa0717310:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 11071439 11080794 11071439 ID=Msa0717310;Name=Msa0717310
chr5_1 mRNA 11071439 11080794 11071439 ID=Msa0717310-mRNA-1;Parent=Msa0717310;Name=Msa0717310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.88|0.9|0.9|0.33|0.2|10|2411|66
chr5_1 exon 11071439 11071748 11071439 ID=Msa0717310-mRNA-1:exon:4534;Parent=Msa0717310-mRNA-1
chr5_1 exon 11073067 11073467 11073067 ID=Msa0717310-mRNA-1:exon:4533;Parent=Msa0717310-mRNA-1
chr5_1 exon 11073978 11074073 11073978 ID=Msa0717310-mRNA-1:exon:4532;Parent=Msa0717310-mRNA-1
chr5_1 exon 11074789 11075819 11074789 ID=Msa0717310-mRNA-1:exon:4531;Parent=Msa0717310-mRNA-1
chr5_1 exon 11075997 11076096 11075997 ID=Msa0717310-mRNA-1:exon:4530;Parent=Msa0717310-mRNA-1
chr5_1 exon 11076212 11076349 11076212 ID=Msa0717310-mRNA-1:exon:4529;Parent=Msa0717310-mRNA-1
chr5_1 exon 11076492 11076617 11076492 ID=Msa0717310-mRNA-1:exon:4528;Parent=Msa0717310-mRNA-1
chr5_1 exon 11077674 11077722 11077674 ID=Msa0717310-mRNA-1:exon:4527;Parent=Msa0717310-mRNA-1
chr5_1 exon 11077857 11078137 11077857 ID=Msa0717310-mRNA-1:exon:4526;Parent=Msa0717310-mRNA-1
chr5_1 exon 11080715 11080794 11080715 ID=Msa0717310-mRNA-1:exon:4525;Parent=Msa0717310-mRNA-1
chr5_1 CDS 11080715 11080794 11080715 ID=Msa0717310-mRNA-1:cds;Parent=Msa0717310-mRNA-1
chr5_1 CDS 11078017 11078137 11078017 ID=Msa0717310-mRNA-1:cds;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11077857 11078016 11077857 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11077674 11077722 11077674 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11076492 11076617 11076492 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11076212 11076349 11076212 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11075997 11076096 11075997 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11074789 11075819 11074789 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11073978 11074073 11073978 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11073067 11073467 11073067 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
chr5_1 three_prime_UTR 11071439 11071748 11071439 ID=Msa0717310-mRNA-1:three_prime_utr;Parent=Msa0717310-mRNA-1
Gene Sequence

>Msa0717310

ATGGAGATACATAGTTTAGAAGCTTACCAAGTAAGGATGAAAATTTGGGAAGGATTGGTGGAGGAGAAGAGAGATGGGGCATTAGCGAAATTGTTACCGAAGTTCCAGAAGCTTCTTAAGCGTGAAGTGTTTAAGGCGAAACCGGCGTTATTGGCGTTGATAGGACGTGTAGTTGAAGCTGGTGGCTCGTCAAATAATTGA
Protein sequence

>Msa0717310

MEIHSLEAYQVRMKIWEGLVEEKRDGALAKLLPKFQKLLKREVFKAKPALLALIGRVVEAGGSSNN*