AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606310 MtrunA17_Chr4g0035891 96.622 296 9 1 1 296 1 295 0.0 590
Msa0606310 MtrunA17_Chr3g0145121 53.292 319 107 8 1 296 1 300 1.63e-97 289
Msa0606310 MtrunA17_Chr8g0372291 39.482 309 137 10 1 281 1 287 5.26e-53 175
Msa0606310 MtrunA17_Chr5g0404981 40.282 355 137 11 1 296 51 389 3.16e-50 170
Msa0606310 MtrunA17_Chr3g0140331 38.406 276 120 9 36 281 67 322 2.61e-44 154
Msa0606310 MtrunA17_Chr8g0340401 38.351 279 120 10 39 281 33 295 3.49e-43 150
Msa0606310 MtrunA17_Chr1g0146231 34.921 315 141 12 15 281 5 303 7.11e-42 147
Msa0606310 MtrunA17_Chr1g0199671 75.714 70 17 0 207 276 237 306 1.54e-34 127
Msa0606310 MtrunA17_Chr6g0461591 81.538 65 12 0 212 276 192 256 2.31e-34 125
Msa0606310 MtrunA17_Chr7g0253101 80.000 65 13 0 212 276 188 252 2.68e-33 122
Msa0606310 MtrunA17_Chr1g0213161 67.532 77 25 0 212 288 152 228 3.82e-33 121
Msa0606310 MtrunA17_Chr1g0169431 76.471 68 16 0 212 279 172 239 9.58e-33 120
Msa0606310 MtrunA17_Chr2g0326771 62.791 86 30 1 191 276 197 280 2.82e-32 121
Msa0606310 MtrunA17_Chr4g0028961 73.134 67 18 0 212 278 232 298 4.11e-32 121
Msa0606310 MtrunA17_Chr5g0395391 68.571 70 22 0 212 281 270 339 1.52e-29 114
Msa0606310 MtrunA17_Chr5g0395391 59.036 83 28 1 199 275 149 231 3.18e-26 105
Msa0606310 MtrunA17_Chr7g0232671 57.143 63 27 0 211 273 186 248 1.90e-20 88.2
Msa0606310 MtrunA17_Chr7g0232701 53.968 63 29 0 211 273 72 134 7.63e-19 80.9
Msa0606310 MtrunA17_Chr7g0232681 31.868 182 107 5 105 273 16 193 4.20e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606310 AT4G36240.1 47.471 257 89 11 40 282 10 234 1.98e-56 182
Msa0606310 AT5G66320.2 35.838 346 139 10 8 291 5 329 2.74e-51 172
Msa0606310 AT5G66320.1 35.838 346 139 10 8 291 5 329 2.74e-51 172
Msa0606310 AT4G34680.1 41.379 290 113 10 6 283 7 251 4.49e-49 164
Msa0606310 AT4G34680.2 41.379 290 113 10 6 283 7 251 4.49e-49 164
Msa0606310 AT5G25830.1 38.047 297 108 12 40 281 13 288 2.28e-44 154
Msa0606310 AT3G60530.1 47.778 180 73 5 112 283 63 229 3.18e-43 148
Msa0606310 AT2G45050.1 44.845 194 73 4 112 281 65 248 5.70e-43 148
Msa0606310 AT4G32890.1 35.461 282 112 10 39 281 16 266 1.83e-42 148
Msa0606310 AT3G51080.1 69.231 91 22 2 212 296 221 311 2.92e-38 137
Msa0606310 AT3G24050.1 64.706 85 29 1 197 280 178 262 1.19e-33 124
Msa0606310 AT3G54810.1 75.000 68 17 0 212 279 229 296 4.23e-33 124
Msa0606310 AT3G54810.2 75.000 68 17 0 212 279 229 296 4.23e-33 124
Msa0606310 AT1G08010.2 42.857 147 75 2 142 280 143 288 3.14e-32 121
Msa0606310 AT1G08010.1 42.857 147 75 2 142 280 143 288 3.14e-32 121
Msa0606310 AT1G08010.3 42.857 147 75 2 142 280 143 288 3.14e-32 121
Msa0606310 AT1G08000.2 71.014 69 20 0 212 280 218 286 3.08e-30 116
Msa0606310 AT1G08000.1 71.014 69 20 0 212 280 218 286 3.08e-30 116
Msa0606310 AT3G45170.1 60.274 73 29 0 214 286 117 189 1.07e-26 104
Msa0606310 AT2G28340.1 63.077 65 24 0 214 278 193 257 1.81e-24 100

Find 119 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTGCACTGAGAAAA+TGG 0.161694 4_2:-52511704 None:intergenic
CTTCTTGTCTTGGTTGTTCT+AGG 0.195513 4_2:-52511150 None:intergenic
AGCCCCACCCGTTTGGGCTT+CGG 0.226880 4_2:-52511238 None:intergenic
GCCCCACCCGTTTGGGCTTC+GGG 0.232140 4_2:-52511237 None:intergenic
GGCCGATGATGTTGCGGATT+TGG 0.241470 4_2:+52510993 Msa0606310:intron
TAAATACCAACTTGAATAAA+TGG 0.261771 4_2:-52511797 None:intergenic
GAACAGCCACCGTAAGGTTT+TGG 0.270098 4_2:+52511434 Msa0606310:CDS
GAGGTGGATGAACCGGTTTC+CGG 0.310815 4_2:+52511474 Msa0606310:CDS
GGTTCGGCCCGGGCCTGAAC+TGG 0.312951 4_2:-52511069 None:intergenic
CGAAACAAGCGTTGAGGTAT+TGG 0.323623 4_2:-52510148 None:intergenic
TGCCGGTGGTTTAGCAGTTC+CGG 0.331211 4_2:+52510728 Msa0606310:CDS
GAAACTGAGCCCCACCCGTT+TGG 0.331959 4_2:-52511245 None:intergenic
TCTTTGCTGAAAAGAGTATA+GGG 0.337151 4_2:-52511200 None:intergenic
CAAGAGAGTTTCCTTTGGTT+TGG 0.341415 4_2:-52510188 None:intergenic
TCTCTTCACAAATTGTTTGT+TGG 0.346081 4_2:-52510449 None:intergenic
AAACTGAGCCCCACCCGTTT+GGG 0.350163 4_2:-52511244 None:intergenic
CTTCTTCTTCTTCCTCCTCC+TGG 0.352825 4_2:-52510590 None:intergenic
GTGAACCAACTGGTCTGAAC+CGG 0.355460 4_2:+52511590 Msa0606310:three_prime_UTR
TAGTGAAAATAAAGAAATAA+TGG 0.364355 4_2:+52510098 Msa0606310:five_prime_UTR
CTCTCTATTGTATCCAGTTC+AGG 0.364580 4_2:+52511056 Msa0606310:CDS
AACCGGTTTCCGGTCTGAAC+CGG 0.370991 4_2:+52511484 Msa0606310:CDS
GCATTGGTTGGGCCCGGTCT+AGG 0.372639 4_2:-52511096 None:intergenic
ACAGTTGGGCCTTCTTGTCT+TGG 0.379924 4_2:-52511160 None:intergenic
GTTGGGCCCGGTCTAGGTTC+CGG 0.399228 4_2:-52511090 None:intergenic
TAAGGCAGGTAACGGAGATT+AGG 0.403308 4_2:+52511651 Msa0606310:three_prime_UTR
TAGATTAGCTGATTAGATAC+TGG 0.405597 4_2:+52511568 Msa0606310:three_prime_UTR
AGTTCAGGCCCGGGCCGAAC+CGG 0.407384 4_2:+52511071 Msa0606310:CDS
GTCTAGGTTCCGGTTCGGCC+CGG 0.414385 4_2:-52511080 None:intergenic
GGCCGAACCGGAACCTAGAC+CGG 0.414860 4_2:+52511083 Msa0606310:CDS
TTCTTTGCTGAAAAGAGTAT+AGG 0.416988 4_2:-52511201 None:intergenic
AACGCAAACAACGTTGTTGT+CGG 0.417578 4_2:+52510483 Msa0606310:CDS
TTTGGAAATGAGGCGGAGGA+AGG 0.432787 4_2:+52511452 Msa0606310:CDS
TATGTAACGCTTGTGGTGTT+CGG 0.433641 4_2:+52511340 Msa0606310:CDS
GAATTTCAACATGGTTCTGT+TGG 0.444517 4_2:+52510549 Msa0606310:CDS
TATTGTATCCAGTTCAGGCC+CGG 0.446736 4_2:+52511061 Msa0606310:CDS
GGAATGGGTGTCTCACTTTG+TGG 0.449579 4_2:+52511014 Msa0606310:CDS
AATGAGGCGGAGGAAGGAGG+TGG 0.451531 4_2:+52511458 Msa0606310:CDS
ATCCGGTTCAGACCGGAAAC+CGG 0.452815 4_2:-52511486 None:intergenic
GAGGAAGGAGGTGGATGAAC+CGG 0.452883 4_2:+52511467 Msa0606310:CDS
TCTAGGTTCCGGTTCGGCCC+GGG 0.468440 4_2:-52511079 None:intergenic
ATAGATTCTGTCCTCAAGCT+TGG 0.468461 4_2:-52510423 None:intergenic
GCCTCATTTCCAAAACCTTA+CGG 0.469337 4_2:-52511443 None:intergenic
TTAGATACTGGTGAACCAAC+TGG 0.470608 4_2:+52511580 Msa0606310:three_prime_UTR
ATTAACTGCACTGAGAAAAT+GGG 0.471694 4_2:-52511703 None:intergenic
AACCGCAAGAGAGTTTCCTT+TGG 0.471900 4_2:-52510193 None:intergenic
TTCTGCGGATTATAGAGAGC+TGG 0.472534 4_2:-52511125 None:intergenic
TCTTCGCCATTTATTCAAGT+TGG 0.475612 4_2:+52511791 Msa0606310:three_prime_UTR
CGGTCTGAACCGGATTCAAA+TGG 0.475660 4_2:+52511494 Msa0606310:CDS
ATGATGTTGCGGATTTGGAA+TGG 0.479723 4_2:+52510998 Msa0606310:CDS
AACTCGTGACCATTTGAATC+CGG 0.481371 4_2:-52511503 None:intergenic
CAGTGGAGAGCTGGTCCGCT+TGG 0.483307 4_2:+52511306 Msa0606310:CDS
GGAGTCAGACTCGCCGTCTC+CGG 0.485968 4_2:-52510700 None:intergenic
TGTGGTGTTCGGTTTAAGTC+CGG 0.492368 4_2:+52511351 Msa0606310:CDS
GGATACAATAGAGAGAGTTC+TGG 0.493646 4_2:-52511048 None:intergenic
GCCCGAAGCCCAAACGGGTG+GGG 0.493923 4_2:+52511236 Msa0606310:CDS
AGCTGGGAACAAGCATTGGT+TGG 0.497965 4_2:-52511108 None:intergenic
AAAATCCACACGTTACAGTT+GGG 0.498357 4_2:-52511174 None:intergenic
TGATGAAGAGTGACAAAGAG+AGG 0.498438 4_2:-52510217 None:intergenic
AGAGAGCTGGGAACAAGCAT+TGG 0.499746 4_2:-52511112 None:intergenic
TGATGTTGCGGATTTGGAAT+GGG 0.501793 4_2:+52510999 Msa0606310:CDS
GGAAATGAGGCGGAGGAAGG+AGG 0.505698 4_2:+52511455 Msa0606310:CDS
GCCCGGTCTAGGTTCCGGTT+CGG 0.510484 4_2:-52511085 None:intergenic
AGACTCGCCGTCTCCGGCAC+CGG 0.510633 4_2:-52510694 None:intergenic
TTCTCAGGCCGATGATGTTG+CGG 0.519029 4_2:+52510987 Msa0606310:intron
GGTTTGGAAGCACTGAAATG+AGG 0.521338 4_2:-52510172 None:intergenic
GCTGGGAACAAGCATTGGTT+GGG 0.526938 4_2:-52511107 None:intergenic
GAACAAGCATTGGTTGGGCC+CGG 0.527578 4_2:-52511102 None:intergenic
AAAAGAAATTGATGTTTACC+AGG 0.530934 4_2:+52510572 Msa0606310:CDS
AAAACGCCACAGTGGAGAGC+TGG 0.532352 4_2:+52511297 Msa0606310:CDS
AATTGATGTTTACCAGGAGG+AGG 0.533216 4_2:+52510578 Msa0606310:CDS
GTTTGGAAGCACTGAAATGA+GGG 0.537345 4_2:-52510171 None:intergenic
TGCATGCAGGTCTATACTCC+GGG 0.538197 4_2:-52511383 None:intergenic
TTCCAAATCCGCAACATCAT+CGG 0.540001 4_2:-52510995 None:intergenic
AGCCCGAAGCCCAAACGGGT+GGG 0.541657 4_2:+52511235 Msa0606310:CDS
GTGATAGTGGTAACTTGGTA+AGG 0.542565 4_2:+52511544 Msa0606310:three_prime_UTR
ATTGTATCCAGTTCAGGCCC+GGG 0.543140 4_2:+52511062 Msa0606310:CDS
AGAACGTGATAGTGGTAACT+TGG 0.546604 4_2:+52511539 Msa0606310:three_prime_UTR
TGAACCAACTGGTCTGAACC+GGG 0.550403 4_2:+52511591 Msa0606310:three_prime_UTR
GCCGAACCGGAACCTAGACC+GGG 0.552879 4_2:+52511084 Msa0606310:CDS
TCTGCGGATTATAGAGAGCT+GGG 0.553907 4_2:-52511124 None:intergenic
ATTTGTTGAGAACGTGATAG+TGG 0.554949 4_2:+52511531 Msa0606310:three_prime_UTR
CATTTGAATCCGGTTCAGAC+CGG 0.555998 4_2:-52511493 None:intergenic
GCTGTTCGAATGAATTTCAC+CGG 0.556294 4_2:-52511418 None:intergenic
AAGCCCGAAGCCCAAACGGG+TGG 0.557944 4_2:+52511234 Msa0606310:CDS
TTTCAGTGCTTCCAAACCAA+AGG 0.559065 4_2:+52510177 Msa0606310:five_prime_UTR
GAAAATAAAGAAATAATGGA+AGG 0.567842 4_2:+52510102 Msa0606310:five_prime_UTR
AGTGAGTGACTAGTCAGCTA+AGG 0.570214 4_2:+52511633 Msa0606310:three_prime_UTR
TCCGGCACCGGAAAATGTTG+TGG 0.574032 4_2:-52510682 None:intergenic
TCATTCGAACAGCCACCGTA+AGG 0.576237 4_2:+52511428 Msa0606310:CDS
AGTGACTAGTCAGCTAAGGC+AGG 0.578356 4_2:+52511637 Msa0606310:three_prime_UTR
CTGCATGCAGGTCTATACTC+CGG 0.578551 4_2:-52511384 None:intergenic
CTAGAACAACCAAGACAAGA+AGG 0.581886 4_2:+52511151 Msa0606310:CDS
ACCATGTTGAAATTCACCGT+TGG 0.582797 4_2:-52510541 None:intergenic
GTGCATCACTCTCTATGAGA+AGG 0.588448 4_2:+52510016 Msa0606310:five_prime_UTR
CACCGGAACTGCTAAACCAC+CGG 0.593758 4_2:-52510730 None:intergenic
ATACTCCGGGAAAAGCCGAC+CGG 0.594686 4_2:-52511370 None:intergenic
AAAACCCGGTTCAGACCAGT+TGG 0.597362 4_2:-52511595 None:intergenic
TGGTTGTTCTAGGCTTTCTG+CGG 0.603627 4_2:-52511140 None:intergenic
GAAAACGTCGGACTGCATGC+AGG 0.603890 4_2:-52511396 None:intergenic
TAGTCAGCTAAGGCAGGTAA+CGG 0.605189 4_2:+52511643 Msa0606310:three_prime_UTR
AACCAAAGGAAACTCTCTTG+CGG 0.609093 4_2:+52510191 Msa0606310:five_prime_UTR
AATTATTCAACAAAGTTCAG+CGG 0.611078 4_2:+52511855 Msa0606310:three_prime_UTR
AAACATGGAAGTTGTTGTAG+CGG 0.614309 4_2:+52510389 Msa0606310:exon
TCGTTCATGTTCAGAACCTG+AGG 0.628083 4_2:-52510634 None:intergenic
TTCATGTTCAGAACCTGAGG+TGG 0.629594 4_2:-52510631 None:intergenic
TACTACTATAGTATAAGTCT+AGG 0.631004 4_2:+52511744 Msa0606310:three_prime_UTR
GTGTTCGGTTTAAGTCCGGT+CGG 0.631814 4_2:+52511355 Msa0606310:CDS
AAATTTAGTAGTAGTACTAG+TGG 0.641874 4_2:+52510040 Msa0606310:five_prime_UTR
TCCAACGGTGAATTTCAACA+TGG 0.652718 4_2:+52510540 Msa0606310:CDS
GAAGGCCCAACTGTAACGTG+TGG 0.654146 4_2:+52511169 Msa0606310:CDS
AAAACACTATGTAACGCTTG+TGG 0.656575 4_2:+52511333 Msa0606310:CDS
TGAATTTCACCGGAAAACGT+CGG 0.667076 4_2:-52511408 None:intergenic
AGAAATTGATGTTTACCAGG+AGG 0.667546 4_2:+52510575 Msa0606310:CDS
AAGCGTTGAAACCAAGCTTG+AGG 0.681951 4_2:+52510412 Msa0606310:CDS
TCATTTCCAAAACCTTACGG+TGG 0.687073 4_2:-52511440 None:intergenic
AGCGGACCAGCTCTCCACTG+TGG 0.697012 4_2:-52511303 None:intergenic
TGAGGGCGAAACAAGCGTTG+AGG 0.700340 4_2:-52510154 None:intergenic
ATGTTCAGAAAACGCCACAG+TGG 0.715931 4_2:+52511289 Msa0606310:CDS
GTGGGGCTCAGTTTCAACGA+CGG 0.724625 4_2:+52511253 Msa0606310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTGAAAATAAAGAAATAA+TGG + chr4_2:52510098-52510117 Msa0606310:five_prime_UTR 15.0%
!!! TCACTTTTATTTTATTTATC+AGG + chr4_2:52510237-52510256 Msa0606310:five_prime_UTR 15.0%
!! TAGTGAAAATAAAGAAATAA+TGG + chr4_2:52510098-52510117 Msa0606310:five_prime_UTR 15.0%
!!! TCACTTTTATTTTATTTATC+AGG + chr4_2:52510237-52510256 Msa0606310:five_prime_UTR 15.0%
!!! GAAAATAAAGAAATAATGGA+AGG + chr4_2:52510102-52510121 Msa0606310:five_prime_UTR 20.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_2:52510357-52510376 Msa0606310:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_2:52511800-52511819 None:intergenic 20.0%
!!! GAAAATAAAGAAATAATGGA+AGG + chr4_2:52510102-52510121 Msa0606310:five_prime_UTR 20.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_2:52510357-52510376 Msa0606310:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_2:52511800-52511819 None:intergenic 20.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_2:52510040-52510059 Msa0606310:five_prime_UTR 25.0%
! TGTAGGAGAAAAAAAAAACA+TGG + chr4_2:52510374-52510393 Msa0606310:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_2:52510572-52510591 Msa0606310:CDS 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_2:52510972-52510991 Msa0606310:intron 25.0%
! TACTACTATAGTATAAGTCT+AGG + chr4_2:52511744-52511763 Msa0606310:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_2:52511827-52511846 Msa0606310:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_2:52511855-52511874 Msa0606310:three_prime_UTR 25.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_2:52510040-52510059 Msa0606310:five_prime_UTR 25.0%
! TGTAGGAGAAAAAAAAAACA+TGG + chr4_2:52510374-52510393 Msa0606310:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_2:52510572-52510591 Msa0606310:CDS 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_2:52510972-52510991 Msa0606310:intron 25.0%
! TACTACTATAGTATAAGTCT+AGG + chr4_2:52511744-52511763 Msa0606310:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_2:52511827-52511846 Msa0606310:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_2:52511855-52511874 Msa0606310:three_prime_UTR 25.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_2:52510452-52510471 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_2:52510675-52510694 Msa0606310:CDS 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_2:52510804-52510823 Msa0606310:intron 30.0%
! TCATAGCTAATAACTCGTTT+TGG + chr4_2:52510955-52510974 Msa0606310:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_2:52511203-52511222 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_2:52511204-52511223 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_2:52511568-52511587 Msa0606310:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_2:52511612-52511631 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_2:52511706-52511725 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_2:52511707-52511726 None:intergenic 30.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_2:52510452-52510471 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_2:52510675-52510694 Msa0606310:CDS 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_2:52510804-52510823 Msa0606310:intron 30.0%
! TCATAGCTAATAACTCGTTT+TGG + chr4_2:52510955-52510974 Msa0606310:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_2:52511203-52511222 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_2:52511204-52511223 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_2:52511568-52511587 Msa0606310:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_2:52511612-52511631 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_2:52511706-52511725 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_2:52511707-52511726 None:intergenic 30.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_2:52510389-52510408 Msa0606310:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_2:52510525-52510544 Msa0606310:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_2:52510549-52510568 Msa0606310:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_2:52510575-52510594 Msa0606310:CDS 35.0%
TTGCATGATTAAAGACTCAC+CGG - chr4_2:52510750-52510769 None:intergenic 35.0%
TATCATTAGTGTCATGTGTC+CGG + chr4_2:52510903-52510922 Msa0606310:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_2:52511177-52511196 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_2:52511178-52511197 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_2:52511333-52511352 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_2:52511333-52511352 Msa0606310:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_2:52511531-52511550 Msa0606310:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_2:52511791-52511810 Msa0606310:three_prime_UTR 35.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_2:52510389-52510408 Msa0606310:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_2:52510525-52510544 Msa0606310:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_2:52510549-52510568 Msa0606310:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_2:52510575-52510594 Msa0606310:CDS 35.0%
TTGCATGATTAAAGACTCAC+CGG - chr4_2:52510750-52510769 None:intergenic 35.0%
TATCATTAGTGTCATGTGTC+CGG + chr4_2:52510903-52510922 Msa0606310:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_2:52511177-52511196 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_2:52511178-52511197 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_2:52511333-52511352 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_2:52511333-52511352 Msa0606310:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_2:52511531-52511550 Msa0606310:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_2:52511791-52511810 Msa0606310:three_prime_UTR 35.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_2:52510174-52510193 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_2:52510177-52510196 Msa0606310:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_2:52510191-52510210 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_2:52510191-52510210 Msa0606310:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_2:52510220-52510239 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_2:52510426-52510445 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_2:52510483-52510502 Msa0606310:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_2:52510540-52510559 Msa0606310:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_2:52510544-52510563 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_2:52510578-52510597 Msa0606310:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_2:52510816-52510835 None:intergenic 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_2:52510998-52511017 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_2:52510998-52511017 Msa0606310:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_2:52510999-52511018 Msa0606310:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_2:52511051-52511070 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_2:52511056-52511075 Msa0606310:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_2:52511153-52511172 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_2:52511151-52511170 Msa0606310:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_2:52511208-52511227 Msa0606310:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_2:52511340-52511359 Msa0606310:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_2:52511411-52511430 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_2:52511421-52511440 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_2:52511443-52511462 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_2:52511442-52511461 Msa0606310:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_2:52511446-52511465 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_2:52511445-52511464 Msa0606310:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_2:52511506-52511525 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_2:52511539-52511558 Msa0606310:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_2:52511544-52511563 Msa0606310:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_2:52511580-52511599 Msa0606310:three_prime_UTR 40.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_2:52510174-52510193 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_2:52510177-52510196 Msa0606310:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_2:52510191-52510210 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_2:52510191-52510210 Msa0606310:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_2:52510220-52510239 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_2:52510426-52510445 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_2:52510483-52510502 Msa0606310:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_2:52510540-52510559 Msa0606310:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_2:52510544-52510563 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_2:52510578-52510597 Msa0606310:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_2:52510816-52510835 None:intergenic 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_2:52510998-52511017 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_2:52510998-52511017 Msa0606310:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_2:52510999-52511018 Msa0606310:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_2:52511051-52511070 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_2:52511056-52511075 Msa0606310:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_2:52511153-52511172 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_2:52511151-52511170 Msa0606310:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_2:52511208-52511227 Msa0606310:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_2:52511340-52511359 Msa0606310:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_2:52511411-52511430 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_2:52511421-52511440 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_2:52511443-52511462 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_2:52511442-52511461 Msa0606310:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_2:52511446-52511465 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_2:52511445-52511464 Msa0606310:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_2:52511506-52511525 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_2:52511539-52511558 Msa0606310:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_2:52511544-52511563 Msa0606310:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_2:52511580-52511599 Msa0606310:three_prime_UTR 40.0%
GTGCATCACTCTCTATGAGA+AGG + chr4_2:52510016-52510035 Msa0606310:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_2:52510151-52510170 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_2:52510175-52510194 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_2:52510196-52510215 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_2:52510412-52510431 Msa0606310:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_2:52510618-52510637 Msa0606310:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_2:52510634-52510653 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_2:52510637-52510656 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_2:52510711-52510730 Msa0606310:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_2:52510724-52510743 None:intergenic 45.0%
ATTAGTGTCATGTGTCCGGT+CGG + chr4_2:52510907-52510926 Msa0606310:intron 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_2:52511061-52511080 Msa0606310:CDS 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_2:52511127-52511146 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_2:52511128-52511147 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_2:52511143-52511162 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_2:52511290-52511309 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_2:52511289-52511308 Msa0606310:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_2:52511324-52511343 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_2:52511351-52511370 Msa0606310:CDS 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_2:52511496-52511515 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_2:52511601-52511620 Msa0606310:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_2:52511633-52511652 Msa0606310:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_2:52511643-52511662 Msa0606310:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_2:52511651-52511670 Msa0606310:three_prime_UTR 45.0%
GTGCATCACTCTCTATGAGA+AGG + chr4_2:52510016-52510035 Msa0606310:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_2:52510151-52510170 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_2:52510175-52510194 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_2:52510196-52510215 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_2:52510412-52510431 Msa0606310:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_2:52510618-52510637 Msa0606310:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_2:52510634-52510653 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_2:52510637-52510656 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_2:52510711-52510730 Msa0606310:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_2:52510724-52510743 None:intergenic 45.0%
ATTAGTGTCATGTGTCCGGT+CGG + chr4_2:52510907-52510926 Msa0606310:intron 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_2:52511061-52511080 Msa0606310:CDS 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_2:52511127-52511146 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_2:52511128-52511147 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_2:52511143-52511162 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_2:52511290-52511309 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_2:52511289-52511308 Msa0606310:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_2:52511324-52511343 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_2:52511351-52511370 Msa0606310:CDS 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_2:52511496-52511515 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_2:52511601-52511620 Msa0606310:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_2:52511633-52511652 Msa0606310:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_2:52511643-52511662 Msa0606310:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_2:52511651-52511670 Msa0606310:three_prime_UTR 45.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_2:52510593-52510612 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_2:52510681-52510700 Msa0606310:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_2:52510714-52510733 Msa0606310:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_2:52510987-52511006 Msa0606310:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_2:52511014-52511033 Msa0606310:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_2:52511062-52511081 Msa0606310:CDS 50.0%
!! GCTGGGAACAAGCATTGGTT+GGG - chr4_2:52511110-52511129 None:intergenic 50.0%
!! AGCTGGGAACAAGCATTGGT+TGG - chr4_2:52511111-52511130 None:intergenic 50.0%
AGAGAGCTGGGAACAAGCAT+TGG - chr4_2:52511115-52511134 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_2:52511163-52511182 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_2:52511230-52511249 Msa0606310:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_2:52511231-52511250 Msa0606310:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_2:52511284-52511303 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_2:52511355-52511374 Msa0606310:CDS 50.0%
TGCATGCAGGTCTATACTCC+GGG - chr4_2:52511386-52511405 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+CGG - chr4_2:52511387-52511406 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_2:52511428-52511447 Msa0606310:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_2:52511434-52511453 Msa0606310:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_2:52511448-52511467 Msa0606310:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_2:52511452-52511471 Msa0606310:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_2:52511494-52511513 Msa0606310:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_2:52511590-52511609 Msa0606310:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_2:52511591-52511610 Msa0606310:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_2:52511598-52511617 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_2:52511637-52511656 Msa0606310:three_prime_UTR 50.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_2:52510593-52510612 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_2:52510681-52510700 Msa0606310:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_2:52510714-52510733 Msa0606310:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_2:52510987-52511006 Msa0606310:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_2:52511014-52511033 Msa0606310:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_2:52511062-52511081 Msa0606310:CDS 50.0%
!! GCTGGGAACAAGCATTGGTT+GGG - chr4_2:52511110-52511129 None:intergenic 50.0%
!! AGCTGGGAACAAGCATTGGT+TGG - chr4_2:52511111-52511130 None:intergenic 50.0%
AGAGAGCTGGGAACAAGCAT+TGG - chr4_2:52511115-52511134 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_2:52511163-52511182 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_2:52511230-52511249 Msa0606310:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_2:52511231-52511250 Msa0606310:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_2:52511284-52511303 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_2:52511355-52511374 Msa0606310:CDS 50.0%
TGCATGCAGGTCTATACTCC+GGG - chr4_2:52511386-52511405 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+CGG - chr4_2:52511387-52511406 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_2:52511428-52511447 Msa0606310:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_2:52511434-52511453 Msa0606310:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_2:52511448-52511467 Msa0606310:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_2:52511452-52511471 Msa0606310:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_2:52511494-52511513 Msa0606310:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_2:52511590-52511609 Msa0606310:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_2:52511591-52511610 Msa0606310:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_2:52511598-52511617 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_2:52511637-52511656 Msa0606310:three_prime_UTR 50.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_2:52510157-52510176 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_2:52510685-52510704 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_2:52510687-52510706 Msa0606310:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_2:52510728-52510747 Msa0606310:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_2:52510733-52510752 None:intergenic 55.0%
GACACGACACAAACACCGAC+CGG - chr4_2:52510925-52510944 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_2:52510993-52511012 Msa0606310:intron 55.0%
!! GAACAAGCATTGGTTGGGCC+CGG - chr4_2:52511105-52511124 None:intergenic 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_2:52511169-52511188 Msa0606310:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_2:52511247-52511266 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_2:52511253-52511272 Msa0606310:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_2:52511297-52511316 Msa0606310:CDS 55.0%
!! TAAGTCCGGTCGGCTTTTCC+CGG + chr4_2:52511365-52511384 Msa0606310:CDS 55.0%
ATACTCCGGGAAAAGCCGAC+CGG - chr4_2:52511373-52511392 None:intergenic 55.0%
GAAAACGTCGGACTGCATGC+AGG - chr4_2:52511399-52511418 None:intergenic 55.0%
! GCATGCAGTCCGACGTTTTC+CGG + chr4_2:52511399-52511418 Msa0606310:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_2:52511467-52511486 Msa0606310:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_2:52511474-52511493 Msa0606310:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_2:52511484-52511503 Msa0606310:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_2:52511489-52511508 None:intergenic 55.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_2:52510157-52510176 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_2:52510685-52510704 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_2:52510687-52510706 Msa0606310:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_2:52510728-52510747 Msa0606310:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_2:52510733-52510752 None:intergenic 55.0%
GACACGACACAAACACCGAC+CGG - chr4_2:52510925-52510944 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_2:52510993-52511012 Msa0606310:intron 55.0%
!! GAACAAGCATTGGTTGGGCC+CGG - chr4_2:52511105-52511124 None:intergenic 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_2:52511169-52511188 Msa0606310:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_2:52511247-52511266 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_2:52511253-52511272 Msa0606310:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_2:52511297-52511316 Msa0606310:CDS 55.0%
!! TAAGTCCGGTCGGCTTTTCC+CGG + chr4_2:52511365-52511384 Msa0606310:CDS 55.0%
ATACTCCGGGAAAAGCCGAC+CGG - chr4_2:52511373-52511392 None:intergenic 55.0%
GAAAACGTCGGACTGCATGC+AGG - chr4_2:52511399-52511418 None:intergenic 55.0%
! GCATGCAGTCCGACGTTTTC+CGG + chr4_2:52511399-52511418 Msa0606310:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_2:52511467-52511486 Msa0606310:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_2:52511474-52511493 Msa0606310:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_2:52511484-52511503 Msa0606310:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_2:52511489-52511508 None:intergenic 55.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_2:52511248-52511267 None:intergenic 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_2:52511455-52511474 Msa0606310:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_2:52511458-52511477 Msa0606310:CDS 60.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_2:52511248-52511267 None:intergenic 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_2:52511455-52511474 Msa0606310:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_2:52511458-52511477 Msa0606310:CDS 60.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_2:52510703-52510722 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_2:52511082-52511101 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_2:52511083-52511102 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_2:52511083-52511102 Msa0606310:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_2:52511084-52511103 Msa0606310:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_2:52511088-52511107 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_2:52511093-52511112 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_2:52511099-52511118 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_2:52511234-52511253 Msa0606310:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_2:52511235-52511254 Msa0606310:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_2:52511241-52511260 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_2:52511306-52511325 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_2:52511306-52511325 Msa0606310:CDS 65.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_2:52510703-52510722 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_2:52511082-52511101 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_2:52511083-52511102 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_2:52511083-52511102 Msa0606310:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_2:52511084-52511103 Msa0606310:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_2:52511088-52511107 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_2:52511093-52511112 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_2:52511099-52511118 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_2:52511234-52511253 Msa0606310:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_2:52511235-52511254 Msa0606310:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_2:52511241-52511260 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_2:52511306-52511325 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_2:52511306-52511325 Msa0606310:CDS 65.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_2:52510697-52510716 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_2:52511071-52511090 Msa0606310:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_2:52511236-52511255 Msa0606310:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_2:52511240-52511259 None:intergenic 70.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_2:52510697-52510716 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_2:52511071-52511090 Msa0606310:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_2:52511236-52511255 Msa0606310:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_2:52511240-52511259 None:intergenic 70.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_2:52511072-52511091 None:intergenic 75.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_2:52511072-52511091 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52510016 52511919 52510016 ID=Msa0606310;Name=Msa0606310
chr4_2 mRNA 52510016 52511919 52510016 ID=Msa0606310-mRNA-1;Parent=Msa0606310;Name=Msa0606310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=257|1|1|1|0.5|0.33|3|392|296
chr4_2 exon 52510016 52510258 52510016 ID=Msa0606310-mRNA-1:exon:12897;Parent=Msa0606310-mRNA-1
chr4_2 exon 52510379 52510749 52510379 ID=Msa0606310-mRNA-1:exon:12898;Parent=Msa0606310-mRNA-1
chr4_2 exon 52510994 52511919 52510994 ID=Msa0606310-mRNA-1:exon:12899;Parent=Msa0606310-mRNA-1
chr4_2 five_prime_UTR 52510016 52510258 52510016 ID=Msa0606310-mRNA-1:five_prime_utr;Parent=Msa0606310-mRNA-1
chr4_2 five_prime_UTR 52510379 52510392 52510379 ID=Msa0606310-mRNA-1:five_prime_utr;Parent=Msa0606310-mRNA-1
chr4_2 CDS 52510393 52510749 52510393 ID=Msa0606310-mRNA-1:cds;Parent=Msa0606310-mRNA-1
chr4_2 CDS 52510994 52511527 52510994 ID=Msa0606310-mRNA-1:cds;Parent=Msa0606310-mRNA-1
chr4_2 three_prime_UTR 52511528 52511919 52511528 ID=Msa0606310-mRNA-1:three_prime_utr;Parent=Msa0606310-mRNA-1
Gene Sequence

>Msa0606310

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAAAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTGCCGGAGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTGTTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCGGAGTATAGACCTGCATGCAGTCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA
Protein sequence

>Msa0606310

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGAGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNACSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS*