AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799280 MtrunA17_Chr5g0404311 95.312 768 35 1 1 768 1 767 0.0 1473
Msa0799280 MtrunA17_Chr8g0373031 56.522 759 316 6 1 756 1 748 0.0 844
Msa0799280 MtrunA17_Chr8g0377151 31.198 718 447 13 19 713 19 712 8.89e-102 330
Msa0799280 MtrunA17_Chr3g0122721 30.769 767 483 16 10 754 9 749 1.44e-99 325
Msa0799280 MtrunA17_Chr1g0155261 41.627 209 121 1 19 226 16 224 1.37e-38 143
Msa0799280 MtrunA17_Chr1g0183781 28.257 499 281 17 271 713 239 716 2.93e-30 127
Msa0799280 MtrunA17_Chr7g0237931 26.196 439 250 14 274 709 238 605 1.32e-27 118
Msa0799280 MtrunA17_Chr7g0275081 37.857 140 85 1 225 362 28 167 4.78e-27 115
Msa0799280 MtrunA17_Chr4g0044411 49.412 85 43 0 264 348 264 348 9.12e-24 107
Msa0799280 MtrunA17_Chr7g0234671 24.176 455 249 14 242 662 54 446 8.30e-23 102
Msa0799280 MtrunA17_Chr2g0284461 21.510 437 288 10 274 710 293 674 3.49e-22 102
Msa0799280 MtrunA17_Chr1g0199321 53.333 75 35 0 274 348 248 322 3.53e-22 101
Msa0799280 MtrunA17_Chr4g0031431 24.847 326 207 9 29 348 37 330 1.11e-21 100
Msa0799280 MtrunA17_Chr3g0106931 48.889 90 45 1 266 354 225 314 2.32e-21 99.8
Msa0799280 MtrunA17_Chr1g0189811 45.455 77 42 0 274 350 64 140 1.42e-20 95.5
Msa0799280 MtrunA17_Chr7g0248251 37.903 124 64 2 253 367 258 377 4.14e-20 95.5
Msa0799280 MtrunA17_Chr4g0013091 24.070 457 270 15 266 710 306 697 1.83e-19 93.6
Msa0799280 MtrunA17_Chr7g0261371 47.436 78 41 0 271 348 239 316 2.02e-19 93.6
Msa0799280 MtrunA17_Chr7g0261371 29.655 290 162 12 451 713 516 790 5.87e-12 69.3
Msa0799280 MtrunA17_Chr5g0437411 48.649 74 38 0 274 347 294 367 1.89e-18 90.1
Msa0799280 MtrunA17_Chr5g0413681 43.902 82 46 0 275 356 282 363 2.22e-17 86.7
Msa0799280 MtrunA17_Chr4g0059201 43.243 74 42 0 274 347 320 393 2.82e-16 83.2
Msa0799280 MtrunA17_Chr1g0198984 50.794 63 31 0 286 348 1 63 3.65e-16 75.1
Msa0799280 MtrunA17_Chr3g0117851 42.500 80 46 0 274 353 276 355 1.21e-15 81.3
Msa0799280 MtrunA17_Chr4g0044631 40.000 100 55 3 274 369 15 113 1.43e-15 79.7
Msa0799280 MtrunA17_Chr1g0177261 41.509 106 48 6 265 359 1 103 5.10e-14 75.1
Msa0799280 MtrunA17_Chr3g0110121 38.372 86 49 2 269 350 32 117 5.38e-14 75.1
Msa0799280 MtrunA17_Chr6g0449461 28.866 291 186 10 446 723 10 292 7.47e-14 73.6
Msa0799280 MtrunA17_Chr5g0420471 38.095 84 48 2 271 350 23 106 9.19e-14 74.3
Msa0799280 MtrunA17_Chr5g0434171 39.286 84 47 2 271 350 33 116 1.58e-13 73.6
Msa0799280 MtrunA17_Chr6g0479261 38.095 84 48 2 271 350 23 106 1.72e-13 73.6
Msa0799280 MtrunA17_Chr1g0177281 41.509 106 48 6 265 359 1 103 2.01e-13 73.2
Msa0799280 MtrunA17_Chr1g0177271 45.349 86 37 4 265 343 1 83 4.11e-13 72.4
Msa0799280 MtrunA17_Chr4g0048811 47.761 67 34 1 274 339 6 72 7.28e-13 70.5
Msa0799280 MtrunA17_Chr8g0390311 34.615 104 66 2 246 348 369 471 1.16e-12 72.0
Msa0799280 MtrunA17_Chr5g0429231 25.532 282 195 6 440 712 40 315 1.39e-12 70.1
Msa0799280 MtrunA17_Chr2g0290151 28.743 167 112 5 550 713 290 452 5.17e-12 68.9
Msa0799280 MtrunA17_Chr1g0177301 42.045 88 45 4 269 350 2 89 7.16e-12 68.2
Msa0799280 MtrunA17_Chr5g0435041 24.528 212 114 3 546 712 89 299 1.10e-11 67.4
Msa0799280 MtrunA17_Chr7g0267501 41.573 89 45 4 269 350 4 92 2.77e-11 66.2
Msa0799280 MtrunA17_Chr3g0129811 39.130 69 42 0 271 339 81 149 3.80e-11 66.2
Msa0799280 MtrunA17_Chr2g0280671 44.615 65 36 0 275 339 17 81 7.02e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799280 AT4G36550.1 36.856 757 399 17 17 756 12 706 8.85e-139 426
Msa0799280 AT1G24330.1 33.102 719 430 15 19 713 17 708 4.62e-113 361
Msa0799280 AT1G24330.2 33.102 719 430 15 19 713 17 708 4.62e-113 361
Msa0799280 AT1G67530.2 32.664 747 460 16 19 749 17 736 3.50e-110 353
Msa0799280 AT1G67530.1 32.664 747 460 16 19 749 17 736 3.50e-110 353
Msa0799280 AT1G67530.4 32.664 747 460 16 19 749 17 736 3.50e-110 353
Msa0799280 AT1G27910.1 30.590 729 433 15 19 713 17 706 4.98e-91 302
Msa0799280 AT1G67530.3 34.990 503 300 10 19 510 17 503 1.62e-85 281
Msa0799280 AT5G67340.1 25.427 468 307 12 274 710 241 697 3.27e-34 140
Msa0799280 AT5G67340.2 25.427 468 307 12 274 710 241 697 3.27e-34 140
Msa0799280 AT3G46510.1 26.807 332 210 7 23 350 31 333 2.24e-25 112
Msa0799280 AT3G07360.1 53.333 75 35 0 271 345 72 146 6.53e-25 109
Msa0799280 AT5G42340.1 26.061 330 197 9 27 349 77 366 5.71e-24 108
Msa0799280 AT2G28830.1 48.276 87 45 0 262 348 173 259 1.74e-22 102
Msa0799280 AT2G23140.1 46.591 88 47 0 267 354 227 314 4.45e-22 102
Msa0799280 AT2G23140.1 24.900 249 163 6 466 713 597 822 1.23e-12 72.0
Msa0799280 AT2G23140.2 46.591 88 47 0 267 354 224 311 4.71e-22 102
Msa0799280 AT2G23140.2 24.900 249 163 6 466 713 594 819 1.23e-12 72.0
Msa0799280 AT2G23140.4 46.591 88 47 0 267 354 224 311 4.71e-22 102
Msa0799280 AT2G23140.4 24.900 249 163 6 466 713 594 819 1.23e-12 72.0
Msa0799280 AT2G23140.3 46.591 88 47 0 267 354 35 122 4.90e-22 101
Msa0799280 AT2G23140.3 24.900 249 163 6 466 713 405 630 8.30e-13 72.4
Msa0799280 AT2G23140.5 46.591 88 47 0 267 354 35 122 4.90e-22 101
Msa0799280 AT2G23140.5 24.900 249 163 6 466 713 405 630 8.30e-13 72.4
Msa0799280 AT1G23030.1 25.291 344 234 8 259 584 227 565 5.20e-22 101
Msa0799280 AT3G54850.1 52.000 75 36 0 274 348 249 323 1.66e-21 100
Msa0799280 AT1G71020.2 43.000 100 53 1 249 348 75 170 7.58e-21 97.1
Msa0799280 AT1G71020.1 43.000 100 53 1 249 348 223 318 1.96e-20 96.7
Msa0799280 AT3G54790.2 38.372 86 53 0 271 356 200 285 1.34e-17 87.8
Msa0799280 AT3G54790.3 38.372 86 53 0 271 356 236 321 1.78e-17 87.8
Msa0799280 AT3G54790.1 38.372 86 53 0 271 356 236 321 1.78e-17 87.8
Msa0799280 AT1G29340.1 46.053 76 41 0 271 346 303 378 4.32e-16 83.2
Msa0799280 AT5G01830.1 44.444 72 40 0 274 345 275 346 6.67e-16 82.4
Msa0799280 AT5G18340.1 31.757 148 88 2 223 358 12 158 9.88e-16 80.9
Msa0799280 AT1G49780.1 46.914 81 39 2 274 350 15 95 1.58e-15 80.1
Msa0799280 AT5G18320.1 46.575 73 38 1 271 343 70 141 8.28e-15 78.2
Msa0799280 AT3G19380.1 43.902 82 41 3 274 350 15 96 4.88e-14 75.5
Msa0799280 AT1G66160.1 39.130 92 52 2 263 350 23 114 7.27e-14 75.1
Msa0799280 AT5G37490.1 42.045 88 46 2 267 350 26 112 1.14e-13 74.3
Msa0799280 AT2G35930.1 45.122 82 40 3 274 350 13 94 9.58e-13 71.2
Msa0799280 AT3G52450.1 43.902 82 41 3 274 350 8 89 1.37e-12 70.9
Msa0799280 AT1G60190.1 40.244 82 49 0 275 356 280 361 1.57e-12 71.6
Msa0799280 AT1G10560.1 34.906 106 68 1 248 352 262 367 1.69e-12 71.6
Msa0799280 AT1G01680.1 40.244 82 49 0 262 343 222 303 2.61e-12 68.9
Msa0799280 AT5G18330.1 38.571 70 42 1 271 340 63 131 7.60e-12 68.9
Msa0799280 AT3G61390.4 36.842 76 48 0 264 339 269 344 7.96e-12 68.2
Msa0799280 AT3G61390.2 36.842 76 48 0 264 339 344 419 1.60e-11 67.8
Msa0799280 AT3G49810.1 46.970 66 35 0 274 339 65 130 2.28e-11 67.4
Msa0799280 AT1G56040.1 38.961 77 47 0 262 338 342 418 3.00e-11 66.6
Msa0799280 AT5G57035.1 43.939 66 37 0 274 339 709 774 5.93e-11 66.6

Find 165 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATACCCTCTCCTTTC+AGG 0.129941 5_3:+12439075 Msa0799280:CDS
ATACATCTGCTGCTTAATTT+TGG 0.151569 5_3:+12442583 Msa0799280:three_prime_UTR
TGCATTGGATGCTGCAATTT+TGG 0.187482 5_3:-12441696 None:intergenic
GGATTATCTTAAGTTGATTT+TGG 0.208826 5_3:+12442060 Msa0799280:CDS
AAGTCCTTCATGACAATATT+TGG 0.222378 5_3:-12440598 None:intergenic
ATAACTTCCCAAACTCTTAA+TGG 0.232924 5_3:-12440713 None:intergenic
GCCATAATGGAAGAACTTTC+TGG 0.238374 5_3:+12441656 Msa0799280:CDS
TTGGAAGTTGCTTGCATATT+TGG 0.240940 5_3:+12438316 Msa0799280:five_prime_UTR
TTTCAAGCTCATGAGATTCT+TGG 0.241484 5_3:-12438161 None:intergenic
CCAATAGCACTTTATTAGTT+TGG 0.245701 5_3:+12438297 Msa0799280:five_prime_UTR
ACAAAGCTTAATTCCCATTC+AGG 0.250995 5_3:+12439774 Msa0799280:CDS
GTTCAATGAAATTTGTATAT+TGG 0.252298 5_3:-12438202 None:intergenic
AATCACCTCCATTAAGAGTT+TGG 0.258899 5_3:+12440705 Msa0799280:CDS
TCCAGAAAGTTCTTCCATTA+TGG 0.272030 5_3:-12441657 None:intergenic
CCAAACTAATAAAGTGCTAT+TGG 0.272229 5_3:-12438297 None:intergenic
AGATCGTTTCTCGATTAAAA+TGG 0.277574 5_3:-12440149 None:intergenic
TGAGTATGCTACATTTGTTC+TGG 0.287071 5_3:+12439991 Msa0799280:CDS
CAATAGTAACGTGTAATTCT+AGG 0.289232 5_3:+12438370 Msa0799280:five_prime_UTR
AAGAATAAACAAAATAAAAT+AGG 0.289390 5_3:-12442759 None:intergenic
GATCCTGTTATCATTGCTTC+TGG 0.293374 5_3:+12440478 Msa0799280:CDS
ACCTGAAAGGAGAGGGTATT+TGG 0.293706 5_3:-12439076 None:intergenic
TTCTTCAATAGTAGTCTAAT+TGG 0.304543 5_3:+12438342 Msa0799280:five_prime_UTR
TAAGAGCCAGTTTGGATTGA+TGG 0.313296 5_3:+12442430 Msa0799280:three_prime_UTR
TGTGAATGTGTGTGATATAT+TGG 0.316428 5_3:+12442491 Msa0799280:three_prime_UTR
TACATCAACCTTGAGGATAT+TGG 0.317123 5_3:-12440454 None:intergenic
CAACATGTCACTTGGATCAT+TGG 0.319176 5_3:+12440768 Msa0799280:CDS
GAACTGTTGTTGGTAATAAT+TGG 0.328521 5_3:-12442214 None:intergenic
ATGCTTGATAAGAGCCAGTT+TGG 0.336886 5_3:+12442422 Msa0799280:three_prime_UTR
ATCACCTCCATTAAGAGTTT+GGG 0.353633 5_3:+12440706 Msa0799280:CDS
CTCAACTTCATGATCTTCAA+TGG 0.371229 5_3:+12440932 Msa0799280:CDS
CACTATTGGTTCTCATTAAG+AGG 0.380327 5_3:-12439033 None:intergenic
CTTCTTGATTCAGAAGTGAT+AGG 0.387240 5_3:+12441623 Msa0799280:CDS
AATCCTAGTTTCTTCAGAAA+TGG 0.387275 5_3:-12442286 None:intergenic
ACTTATGCATCCCTTTGTTT+CGG 0.390748 5_3:-12441945 None:intergenic
AGGAGAAGTACTTGCCATAA+TGG 0.393561 5_3:+12441643 Msa0799280:CDS
TTCCGACAGAAGCTGAGTTC+CGG 0.397671 5_3:-12441106 None:intergenic
GACTGGAACCATACCCTGAA+TGG 0.398503 5_3:-12439788 None:intergenic
CTTAATTCCCATTCAGGGTA+TGG 0.404422 5_3:+12439780 Msa0799280:CDS
TCACAGAATGGAAATGATAA+AGG 0.407952 5_3:+12442115 Msa0799280:CDS
TTATTCTTATAGCATGTTGT+TGG 0.411310 5_3:-12441763 None:intergenic
AACAAAATAAAATAGGAAAC+TGG 0.414555 5_3:-12442752 None:intergenic
TAGCAGATATGATTTATATA+TGG 0.425285 5_3:+12442454 Msa0799280:three_prime_UTR
CTAGAGTTATCCCTTGCAAT+TGG 0.428602 5_3:-12440316 None:intergenic
ACTCCAGAAGCAATGATAAC+AGG 0.429341 5_3:-12440481 None:intergenic
TTTAGTAATATTCTCAAGAA+AGG 0.431108 5_3:-12442519 None:intergenic
TGCTATCCATCAATCCAAAC+TGG 0.436944 5_3:-12442436 None:intergenic
TGTTGGCAGGAAGAGGGAAA+AGG 0.439214 5_3:-12442720 None:intergenic
TGAGATGTTATATTCAGTCT+TGG 0.439810 5_3:-12440121 None:intergenic
TCCAGTCATGTTGGCTGTAG+AGG 0.442914 5_3:+12439804 Msa0799280:CDS
TGAAGATACGTTCATAAAGT+TGG 0.444353 5_3:+12441595 Msa0799280:CDS
TATGTGATGGAAGGGTTTCA+AGG 0.449063 5_3:-12438000 None:intergenic
CATAGAATTGATGAAAATAG+TGG 0.450941 5_3:+12439331 Msa0799280:CDS
ACCTCTACAGCCAACATGAC+TGG 0.454239 5_3:-12439805 None:intergenic
AAGAAGTTTCTAGATAAAGT+TGG 0.465531 5_3:+12440175 Msa0799280:CDS
GGACGTGCTTCCTCTATGTC+TGG 0.467090 5_3:-12439374 None:intergenic
TCAACTTCATGATCTTCAAT+GGG 0.469345 5_3:+12440933 Msa0799280:CDS
TCTGTATGTCTACCTGGATC+AGG 0.469637 5_3:-12440658 None:intergenic
CATCAGATTCAAGTCATGAT+TGG 0.470843 5_3:-12440827 None:intergenic
ATTACTTCTTCAACATTGCT+CGG 0.472225 5_3:+12439457 Msa0799280:CDS
GTTGGCAGGAAGAGGGAAAA+GGG 0.474180 5_3:-12442719 None:intergenic
TATTACTTTCAGGCTGTGAC+AGG 0.476168 5_3:+12439706 Msa0799280:intron
TTGTATAGTGGTGGTGGTGG+TGG 0.476960 5_3:+12442633 Msa0799280:three_prime_UTR
ATTGGACACTTGTATTCCTC+AGG 0.479427 5_3:-12440436 None:intergenic
ACTGAATATAACATCTCAAA+AGG 0.479795 5_3:+12440126 Msa0799280:CDS
GCACGTCCAAGATGTTCATC+AGG 0.480753 5_3:+12439389 Msa0799280:CDS
CATGGCCATGAAAATTGAAA+AGG 0.486010 5_3:-12438077 None:intergenic
TCTATTCCTGATGAACATCT+TGG 0.488308 5_3:-12439395 None:intergenic
TCACCATTTCTGAAGAAACT+AGG 0.488630 5_3:+12442283 Msa0799280:CDS
GATTCTGCTGAAGAAGAGGC+TGG 0.489454 5_3:+12440013 Msa0799280:CDS
CTTCTTAGTAGTAAAATCAA+TGG 0.490228 5_3:+12438246 Msa0799280:five_prime_UTR
AAAGAATGTGGATAAGAAAG+TGG 0.491198 5_3:+12440512 Msa0799280:CDS
GACGTAAAAGCGCTGAGAGC+CGG 0.495304 5_3:+12441087 Msa0799280:CDS
AATTCTATTGCCGAAACAAA+GGG 0.496586 5_3:+12441935 Msa0799280:CDS
TACTTGATTCTGATAACAAA+GGG 0.497678 5_3:+12441738 Msa0799280:CDS
CTCTTAATGAGAACCAATAG+TGG 0.499914 5_3:+12439034 Msa0799280:exon
GGAATCTGTAGAACTGTTGT+TGG 0.501183 5_3:-12442224 None:intergenic
TCTAGTATGTTGGCAGGAAG+AGG 0.501878 5_3:-12442727 None:intergenic
ATGGAAGAACTTTCTGGAGA+TGG 0.503922 5_3:+12441662 Msa0799280:CDS
TTATGAACGTATCTTCACTT+AGG 0.504024 5_3:-12441589 None:intergenic
GAGCAATGCAAATGATCAGC+AGG 0.504932 5_3:+12441065 Msa0799280:CDS
TTTATTTATGTGTACCTGAA+AGG 0.505342 5_3:-12439089 None:intergenic
ATTGTATTGTATAGTGGTGG+TGG 0.506458 5_3:+12442627 Msa0799280:three_prime_UTR
TATCCTTGTGATACCATTGT+GGG 0.506979 5_3:+12442384 Msa0799280:three_prime_UTR
GGTGTCTCCATTCCTGATCC+AGG 0.507047 5_3:+12440646 Msa0799280:CDS
ACTGGAACCATACCCTGAAT+GGG 0.507557 5_3:-12439787 None:intergenic
GTAAGAGAATTGCTTCATCA+AGG 0.507831 5_3:+12440043 Msa0799280:CDS
CGGAATTTGTGAACAACTGC+AGG 0.508751 5_3:+12441124 Msa0799280:CDS
TGGTTAAAGTATGTGATGGA+AGG 0.511760 5_3:-12438009 None:intergenic
GGTTAAAGTATGTGATGGAA+GGG 0.511997 5_3:-12438008 None:intergenic
ATGTACATGTTCTCAAAATG+TGG 0.513586 5_3:+12442039 Msa0799280:CDS
CAAAGCTTAATTCCCATTCA+GGG 0.514357 5_3:+12439775 Msa0799280:CDS
GACTCCAAATATTGTCATGA+AGG 0.514758 5_3:+12440594 Msa0799280:CDS
GCATGGAAACTTAATGTTGG+TGG 0.522527 5_3:+12440255 Msa0799280:CDS
GATAAGAAAGTGGATTAATG+AGG 0.523558 5_3:+12440522 Msa0799280:CDS
ACAGTAGGCACTGTAACAGT+AGG 0.525492 5_3:+12442664 Msa0799280:three_prime_UTR
GAGAATATTTCCAGACATAG+AGG 0.529000 5_3:+12439364 Msa0799280:CDS
CTGGTCTCTAGTATGTTGGC+AGG 0.529952 5_3:-12442733 None:intergenic
GAAGTTGCTTGCATATTTGG+TGG 0.533912 5_3:+12438319 Msa0799280:five_prime_UTR
TTTGGAGTCAATGTCATATG+AGG 0.534604 5_3:-12440580 None:intergenic
AAATCTTCTGTATGTCTACC+TGG 0.534943 5_3:-12440664 None:intergenic
AACATTTGTGATACTGAAGA+AGG 0.537856 5_3:+12441908 Msa0799280:CDS
TGGACAAACTTCACTGTTGT+AGG 0.541725 5_3:-12441798 None:intergenic
GACATGTTGGTAAGATCCAT+TGG 0.542509 5_3:-12440754 None:intergenic
GCATGAACTGTATGCTTGTG+AGG 0.545176 5_3:-12440877 None:intergenic
GTGGTGGTTATGTTTACAGT+AGG 0.546072 5_3:+12442649 Msa0799280:three_prime_UTR
GGAATGCAGCAAACTTTACC+TGG 0.549952 5_3:+12439478 Msa0799280:CDS
CAATGATCTGAACTTGCCAA+TGG 0.550541 5_3:+12440738 Msa0799280:CDS
TTACTTGATTCTGATAACAA+AGG 0.553043 5_3:+12441737 Msa0799280:CDS
AGGTTCAACCTCAGATTCCA+TGG 0.554010 5_3:+12440063 Msa0799280:CDS
CATGGAAACTTAATGTTGGT+GGG 0.555579 5_3:+12440256 Msa0799280:CDS
GATTTCTTCGTCGAGAATCA+CGG 0.555802 5_3:-12440339 None:intergenic
TTTAACTTCAAAGTCGTCCA+TGG 0.559348 5_3:-12440080 None:intergenic
GATCTTACCAACATGTCACT+TGG 0.560709 5_3:+12440760 Msa0799280:CDS
TTCTGTGAGATATAGAAAAG+AGG 0.564373 5_3:-12442100 None:intergenic
GAAACTGGTCTCTAGTATGT+TGG 0.564897 5_3:-12442737 None:intergenic
GGGTATGGTTCCAGTCATGT+TGG 0.567915 5_3:+12439795 Msa0799280:CDS
AAATTCTATTGCCGAAACAA+AGG 0.571416 5_3:+12441934 Msa0799280:CDS
CAATGATCCAAGTGACATGT+TGG 0.572790 5_3:-12440767 None:intergenic
TCTGGATTCTGCTGAAGAAG+AGG 0.573607 5_3:+12440009 Msa0799280:CDS
TTATTGGTTAAAGTATGTGA+TGG 0.574426 5_3:-12438013 None:intergenic
ATTGTAATTGTATTGTATAG+TGG 0.575715 5_3:+12442621 Msa0799280:three_prime_UTR
TAAGACAGAAGTGAGTGCAT+TGG 0.577623 5_3:-12441711 None:intergenic
TAGTGAAAATAAAGCAAGCA+TGG 0.578421 5_3:-12438095 None:intergenic
ATGTCTACCTGGATCAGGAA+TGG 0.578674 5_3:-12440653 None:intergenic
AGCCGGAACTCAGCTTCTGT+CGG 0.579942 5_3:+12441104 Msa0799280:CDS
ATTGCTGAAATACTTGAGAG+TGG 0.582850 5_3:+12441971 Msa0799280:CDS
GGACACTTGTATTCCTCAGG+TGG 0.587812 5_3:-12440433 None:intergenic
GTATTGTATAGTGGTGGTGG+TGG 0.590239 5_3:+12442630 Msa0799280:three_prime_UTR
ACACACATTCACAAAGATTG+AGG 0.593009 5_3:-12442481 None:intergenic
CTAGTATGTTGGCAGGAAGA+GGG 0.593142 5_3:-12442726 None:intergenic
CAGTAGGCACTGTAACAGTA+GGG 0.595779 5_3:+12442665 Msa0799280:three_prime_UTR
CTGACACTGACAAAGTAGCT+TGG 0.600806 5_3:-12441008 None:intergenic
ATTCTGCTGAAGAAGAGGCT+GGG 0.601067 5_3:+12440014 Msa0799280:CDS
GAGTAACATATGAAAGAATG+TGG 0.601967 5_3:+12440500 Msa0799280:CDS
ATAAGAAAGTGGATTAATGA+GGG 0.602588 5_3:+12440523 Msa0799280:CDS
TATGTGTACCTGAAAGGAGA+GGG 0.606017 5_3:-12439083 None:intergenic
CAGTGAAGTTTGTCCACACA+TGG 0.607997 5_3:+12441805 Msa0799280:CDS
AATGTTGGTGGGAGAACACA+TGG 0.609389 5_3:+12440267 Msa0799280:CDS
GAATGGAAATGATAAAGGAA+AGG 0.610121 5_3:+12442120 Msa0799280:CDS
GATGAATCAGTCGGATAGAG+TGG 0.610590 5_3:+12440408 Msa0799280:CDS
AATGTGTTGAGAATGAAGAT+AGG 0.612607 5_3:+12442182 Msa0799280:CDS
TCCTTGTGATACCATTGTGG+GGG 0.616090 5_3:+12442386 Msa0799280:three_prime_UTR
CAAAATATGAAGCAATTCCA+CGG 0.616213 5_3:-12442149 None:intergenic
TAGAGAAGAACCAATTGCAA+GGG 0.618427 5_3:+12440306 Msa0799280:CDS
CATTGAAGATCATGAAGTTG+AGG 0.619411 5_3:-12440931 None:intergenic
TAAAACTGAGATGAATCAGT+CGG 0.620886 5_3:+12440399 Msa0799280:CDS
GGTCTTAACTTGTGACACAT+CGG 0.622908 5_3:-12440806 None:intergenic
AAAGCATGGAAACTTAATGT+TGG 0.624675 5_3:+12440252 Msa0799280:CDS
GTAGAGAAGAACCAATTGCA+AGG 0.624828 5_3:+12440305 Msa0799280:CDS
AAAGTCGTCCATGGAATCTG+AGG 0.626252 5_3:-12440071 None:intergenic
TTATGTGTACCTGAAAGGAG+AGG 0.628672 5_3:-12439084 None:intergenic
ACAAGTGTCCAATATCCTCA+AGG 0.631386 5_3:+12440446 Msa0799280:CDS
ATATCCTTGTGATACCATTG+TGG 0.633299 5_3:+12442383 Msa0799280:three_prime_UTR
GGATAGAGTGGCACCACCTG+AGG 0.636060 5_3:+12440420 Msa0799280:CDS
GTAATTGTATTGTATAGTGG+TGG 0.647763 5_3:+12442624 Msa0799280:three_prime_UTR
ACTTCCCAAACTCTTAATGG+AGG 0.650645 5_3:-12440710 None:intergenic
ATCCTTGTGATACCATTGTG+GGG 0.650807 5_3:+12442385 Msa0799280:three_prime_UTR
TAAAGGAAAGGAAAGTGCCG+TGG 0.657866 5_3:+12442132 Msa0799280:CDS
CACATGCATCAAAACCCAGA+AGG 0.661406 5_3:+12442326 Msa0799280:CDS
CCTTGTGATACCATTGTGGG+GGG 0.667814 5_3:+12442387 Msa0799280:three_prime_UTR
TGAAGGACTTGATATCAAAG+TGG 0.687601 5_3:+12440611 Msa0799280:CDS
AGGATCATACATCAACCTTG+AGG 0.687795 5_3:-12440461 None:intergenic
CAATTGACAGATACCATGTG+TGG 0.700444 5_3:-12441818 None:intergenic
GTTGGTAATAATTGGCTGAG+AGG 0.708552 5_3:-12442206 None:intergenic
ATTATGACTTGAGAATGCTG+AGG 0.735899 5_3:-12442362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATAAACAAAATAAAAT+AGG - chr5_3:12442762-12442781 None:intergenic 10.0%
!! GAACAAAAGAAATAAAAAAA+AGG - chr5_3:12438142-12438161 None:intergenic 15.0%
!!! GTTTCTATTATTTTATCTTT+AGG + chr5_3:12438418-12438437 Msa0799280:intron 15.0%
!! ACGATACATAATATATATAA+TGG + chr5_3:12439639-12439658 Msa0799280:intron 15.0%
!!! TTTGTTTTAATATTACTTTC+AGG + chr5_3:12439696-12439715 Msa0799280:intron 15.0%
!! ACAATTGAAAATAGTTTATA+TGG - chr5_3:12441220-12441239 None:intergenic 15.0%
!! TATAAATAATTAAGTTCCTA+AGG + chr5_3:12441356-12441375 Msa0799280:intron 15.0%
!!! GAAAAAATAAGAGGTATTAT+TGG - chr5_3:12438032-12438051 None:intergenic 20.0%
!!! ATTATCCTTTTCAATTTTCA+TGG + chr5_3:12438072-12438091 Msa0799280:five_prime_UTR 20.0%
!! GTTCAATGAAATTTGTATAT+TGG - chr5_3:12438205-12438224 None:intergenic 20.0%
!! ATCAACTTTGATTAATCAAA+TGG + chr5_3:12438537-12438556 Msa0799280:intron 20.0%
!!! TGTAACTTTTGTCAAAATTA+CGG + chr5_3:12438655-12438674 Msa0799280:intron 20.0%
!!! AATTTATTTTGGAATACTCT+TGG - chr5_3:12438904-12438923 None:intergenic 20.0%
!! AACAAAATAATGAAATGCAA+TGG - chr5_3:12439117-12439136 None:intergenic 20.0%
!!! TATTTTGTTCATCATATCAT+AGG + chr5_3:12439128-12439147 Msa0799280:intron 20.0%
!!! ATATAGTTTGTTAGTTAGAT+TGG - chr5_3:12439187-12439206 None:intergenic 20.0%
!! TTACATAAACTCTTATAACT+TGG + chr5_3:12439244-12439263 Msa0799280:intron 20.0%
!! AATGGTTTATTTATACTAAC+AGG + chr5_3:12439657-12439676 Msa0799280:intron 20.0%
!! TATATGTCCAAAAACAAAAA+AGG + chr5_3:12440552-12440571 Msa0799280:CDS 20.0%
!!! ACTATTTTCAATTGTAAATG+TGG + chr5_3:12441225-12441244 Msa0799280:intron 20.0%
!! AAATTTATAATACCAAAAGC+AGG - chr5_3:12441524-12441543 None:intergenic 20.0%
!!! TGAAAAAAGGTAACAATTTT+GGG - chr5_3:12441847-12441866 None:intergenic 20.0%
!!! TTGAAAAAAGGTAACAATTT+TGG - chr5_3:12441848-12441867 None:intergenic 20.0%
!! TAGCAGATATGATTTATATA+TGG + chr5_3:12442454-12442473 Msa0799280:three_prime_UTR 20.0%
!! TTTAGTAATATTCTCAAGAA+AGG - chr5_3:12442522-12442541 None:intergenic 20.0%
!! ATTGTAATTGTATTGTATAG+TGG + chr5_3:12442621-12442640 Msa0799280:three_prime_UTR 20.0%
!! AACAAAATAAAATAGGAAAC+TGG - chr5_3:12442755-12442774 None:intergenic 20.0%
!!! GATATCTGTTTTTACAATTA+AGG - chr5_3:12442819-12442838 None:intergenic 20.0%
!! TTATTGGTTAAAGTATGTGA+TGG - chr5_3:12438016-12438035 None:intergenic 25.0%
! TGTAGTCATGAAAAAATAAG+AGG - chr5_3:12438041-12438060 None:intergenic 25.0%
! CTTCTTAGTAGTAAAATCAA+TGG + chr5_3:12438246-12438265 Msa0799280:five_prime_UTR 25.0%
! TTCTTCAATAGTAGTCTAAT+TGG + chr5_3:12438342-12438361 Msa0799280:five_prime_UTR 25.0%
!!! AATAGAAACTTTTGAGAGTA+AGG - chr5_3:12438407-12438426 None:intergenic 25.0%
!!! ATCAAAGTTGATAAATTCAG+AGG - chr5_3:12438529-12438548 None:intergenic 25.0%
! TAGTGAGTTTGACAAAATTT+AGG + chr5_3:12438602-12438621 Msa0799280:intron 25.0%
!! TGATAATTTGCCATATATCT+TGG - chr5_3:12438727-12438746 None:intergenic 25.0%
!! AGAGAAGGACAAATTTATTT+TGG - chr5_3:12438915-12438934 None:intergenic 25.0%
! TTGTTCTTTCATTACAGTTA+AGG + chr5_3:12438943-12438962 Msa0799280:intron 25.0%
! TTTATTTATGTGTACCTGAA+AGG - chr5_3:12439092-12439111 None:intergenic 25.0%
! CGGAATTTATGTTAATTAAC+AGG + chr5_3:12439292-12439311 Msa0799280:intron 25.0%
! CATAGAATTGATGAAAATAG+TGG + chr5_3:12439331-12439350 Msa0799280:CDS 25.0%
! AAAAAAAAAAAAGACACACC+AGG - chr5_3:12439499-12439518 None:intergenic 25.0%
!!! AGTTTGGATTAACTTGTTTA+TGG - chr5_3:12439925-12439944 None:intergenic 25.0%
! ACTGAATATAACATCTCAAA+AGG + chr5_3:12440126-12440145 Msa0799280:CDS 25.0%
!! AAGAAGTTTCTAGATAAAGT+TGG + chr5_3:12440175-12440194 Msa0799280:CDS 25.0%
! ATGTATCTAATGAAAAAGCA+TGG + chr5_3:12440238-12440257 Msa0799280:CDS 25.0%
!!! ATAAGAAAGTGGATTAATGA+GGG + chr5_3:12440523-12440542 Msa0799280:CDS 25.0%
!! TACAGAAGATTTTATGTTGT+TGG + chr5_3:12440675-12440694 Msa0799280:CDS 25.0%
! ACCATACAAAGATCAAAATT+GGG - chr5_3:12441170-12441189 None:intergenic 25.0%
!! TCTACAATTTCAGAAACTTT+TGG - chr5_3:12441311-12441330 None:intergenic 25.0%
!!! AAGTTTCTGAAATTGTAGAA+AGG + chr5_3:12441312-12441331 Msa0799280:intron 25.0%
!!! TGTGTGTAATTTTTCAGAAA+TGG + chr5_3:12441557-12441576 Msa0799280:intron 25.0%
!!! GTAATTTTTCAGAAATGGTA+TGG + chr5_3:12441562-12441581 Msa0799280:intron 25.0%
! TTACTTGATTCTGATAACAA+AGG + chr5_3:12441737-12441756 Msa0799280:CDS 25.0%
! TACTTGATTCTGATAACAAA+GGG + chr5_3:12441738-12441757 Msa0799280:CDS 25.0%
! TTATTCTTATAGCATGTTGT+TGG - chr5_3:12441766-12441785 None:intergenic 25.0%
!!! GGATTATCTTAAGTTGATTT+TGG + chr5_3:12442060-12442079 Msa0799280:CDS 25.0%
!!! TTTGATGATCTATTTTCTTC+AGG - chr5_3:12442259-12442278 None:intergenic 25.0%
TAGTGAAAATAAAGCAAGCA+TGG - chr5_3:12438098-12438117 None:intergenic 30.0%
! GATTTTACTACTAAGAAGCA+AGG - chr5_3:12438244-12438263 None:intergenic 30.0%
! CCAAACTAATAAAGTGCTAT+TGG - chr5_3:12438300-12438319 None:intergenic 30.0%
CCAATAGCACTTTATTAGTT+TGG + chr5_3:12438297-12438316 Msa0799280:five_prime_UTR 30.0%
CAATAGTAACGTGTAATTCT+AGG + chr5_3:12438370-12438389 Msa0799280:five_prime_UTR 30.0%
TTCAAAGTTCAAACTGTGTT+TGG + chr5_3:12438441-12438460 Msa0799280:intron 30.0%
TCAGAGGTTAACAATTTGAT+TGG - chr5_3:12438513-12438532 None:intergenic 30.0%
! CAAATGGCTTACGATTTTAT+TGG + chr5_3:12438553-12438572 Msa0799280:intron 30.0%
TTGTAGCTTCAACAAAATCA+TGG - chr5_3:12438633-12438652 None:intergenic 30.0%
! AACTTTTGTCAAAATTACGG+TGG + chr5_3:12438658-12438677 Msa0799280:intron 30.0%
CATATATCTTGGTACATGTT+TGG - chr5_3:12438716-12438735 None:intergenic 30.0%
CAAACATGTACCAAGATATA+TGG + chr5_3:12438714-12438733 Msa0799280:intron 30.0%
AGAACAAAATCTACTAGAGA+AGG - chr5_3:12438930-12438949 None:intergenic 30.0%
TATGTGAATGAACGACAAAT+CGG - chr5_3:12439221-12439240 None:intergenic 30.0%
TAACTTGGATGTTAGTACTA+AGG + chr5_3:12439259-12439278 Msa0799280:intron 30.0%
AGTACTAAGGATTCTATTGA+CGG + chr5_3:12439272-12439291 Msa0799280:intron 30.0%
ATTACTTCTTCAACATTGCT+CGG + chr5_3:12439457-12439476 Msa0799280:CDS 30.0%
!!! CTAATGACTTTTTCGCTTTT+TGG - chr5_3:12439753-12439772 None:intergenic 30.0%
AGAAAGGATAAAACTCAGTT+TGG - chr5_3:12439941-12439960 None:intergenic 30.0%
TGAGATGTTATATTCAGTCT+TGG - chr5_3:12440124-12440143 None:intergenic 30.0%
AGATCGTTTCTCGATTAAAA+TGG - chr5_3:12440152-12440171 None:intergenic 30.0%
! TCAAGATTGTCTTCTTTTTC+GGG - chr5_3:12440210-12440229 None:intergenic 30.0%
! CTCAAGATTGTCTTCTTTTT+CGG - chr5_3:12440211-12440230 None:intergenic 30.0%
AAAGCATGGAAACTTAATGT+TGG + chr5_3:12440252-12440271 Msa0799280:CDS 30.0%
TAAAACTGAGATGAATCAGT+CGG + chr5_3:12440399-12440418 Msa0799280:CDS 30.0%
GAGTAACATATGAAAGAATG+TGG + chr5_3:12440500-12440519 Msa0799280:CDS 30.0%
AAAGAATGTGGATAAGAAAG+TGG + chr5_3:12440512-12440531 Msa0799280:CDS 30.0%
!! GATAAGAAAGTGGATTAATG+AGG + chr5_3:12440522-12440541 Msa0799280:CDS 30.0%
!!! GGTAGTTCCTTTTTTGTTTT+TGG - chr5_3:12440562-12440581 None:intergenic 30.0%
AAGTCCTTCATGACAATATT+TGG - chr5_3:12440601-12440620 None:intergenic 30.0%
TCAAAGTGGTGCAAAAATAA+TGG + chr5_3:12440625-12440644 Msa0799280:CDS 30.0%
ATAACTTCCCAAACTCTTAA+TGG - chr5_3:12440716-12440735 None:intergenic 30.0%
TCAACTTCATGATCTTCAAT+GGG + chr5_3:12440933-12440952 Msa0799280:CDS 30.0%
CACCATACAAAGATCAAAAT+TGG - chr5_3:12441171-12441190 None:intergenic 30.0%
! ACTTTTGGATGATTCACTTT+AGG - chr5_3:12441296-12441315 None:intergenic 30.0%
CAAGAAACTTAAAATTTGCG+TGG - chr5_3:12441460-12441479 None:intergenic 30.0%
! AATCAAGCAAACGAATTTTC+AGG - chr5_3:12441487-12441506 None:intergenic 30.0%
TTATGAACGTATCTTCACTT+AGG - chr5_3:12441592-12441611 None:intergenic 30.0%
TGAAGATACGTTCATAAAGT+TGG + chr5_3:12441595-12441614 Msa0799280:CDS 30.0%
AACATTTGTGATACTGAAGA+AGG + chr5_3:12441908-12441927 Msa0799280:CDS 30.0%
AAATTCTATTGCCGAAACAA+AGG + chr5_3:12441934-12441953 Msa0799280:CDS 30.0%
AATTCTATTGCCGAAACAAA+GGG + chr5_3:12441935-12441954 Msa0799280:CDS 30.0%
ATGTACATGTTCTCAAAATG+TGG + chr5_3:12442039-12442058 Msa0799280:CDS 30.0%
TTCTGTGAGATATAGAAAAG+AGG - chr5_3:12442103-12442122 None:intergenic 30.0%
! CTTTTCTATATCTCACAGAA+TGG + chr5_3:12442103-12442122 Msa0799280:CDS 30.0%
TCACAGAATGGAAATGATAA+AGG + chr5_3:12442115-12442134 Msa0799280:CDS 30.0%
GAATGGAAATGATAAAGGAA+AGG + chr5_3:12442120-12442139 Msa0799280:CDS 30.0%
CAAAATATGAAGCAATTCCA+CGG - chr5_3:12442152-12442171 None:intergenic 30.0%
AATGTGTTGAGAATGAAGAT+AGG + chr5_3:12442182-12442201 Msa0799280:CDS 30.0%
!! GAACTGTTGTTGGTAATAAT+TGG - chr5_3:12442217-12442236 None:intergenic 30.0%
AATCCTAGTTTCTTCAGAAA+TGG - chr5_3:12442289-12442308 None:intergenic 30.0%
! GAAATTCATTTTCACCTTCT+GGG - chr5_3:12442343-12442362 None:intergenic 30.0%
TGTGAATGTGTGTGATATAT+TGG + chr5_3:12442491-12442510 Msa0799280:three_prime_UTR 30.0%
!! ATACATCTGCTGCTTAATTT+TGG + chr5_3:12442583-12442602 Msa0799280:three_prime_UTR 30.0%
GTAATTGTATTGTATAGTGG+TGG + chr5_3:12442624-12442643 Msa0799280:three_prime_UTR 30.0%
! GGTTAAAGTATGTGATGGAA+GGG - chr5_3:12438011-12438030 None:intergenic 35.0%
! TGGTTAAAGTATGTGATGGA+AGG - chr5_3:12438012-12438031 None:intergenic 35.0%
CATGGCCATGAAAATTGAAA+AGG - chr5_3:12438080-12438099 None:intergenic 35.0%
TTTCAAGCTCATGAGATTCT+TGG - chr5_3:12438164-12438183 None:intergenic 35.0%
GCAAGGTGAACAAAAAACAA+CGG - chr5_3:12438227-12438246 None:intergenic 35.0%
TTGGAAGTTGCTTGCATATT+TGG + chr5_3:12438316-12438335 Msa0799280:five_prime_UTR 35.0%
GGTTAACAATTTGATTGGAG+AGG - chr5_3:12438508-12438527 None:intergenic 35.0%
GAGAGACTTATAACCATGTT+TGG + chr5_3:12438575-12438594 Msa0799280:intron 35.0%
AACTCACTATGATCCAAACA+TGG - chr5_3:12438591-12438610 None:intergenic 35.0%
TTGGTACATGTTTGGATTGA+CGG - chr5_3:12438708-12438727 None:intergenic 35.0%
CTAAATTGAGAAGTGAGAAG+AGG - chr5_3:12438848-12438867 None:intergenic 35.0%
CTCTTCTCACTTCTCAATTT+AGG + chr5_3:12438846-12438865 Msa0799280:intron 35.0%
!! CACTATTGGTTCTCATTAAG+AGG - chr5_3:12439036-12439055 None:intergenic 35.0%
CTCTTAATGAGAACCAATAG+TGG + chr5_3:12439034-12439053 Msa0799280:exon 35.0%
AACCAATAGTGGTGAAAAAG+TGG + chr5_3:12439045-12439064 Msa0799280:CDS 35.0%
GAGAATATTTCCAGACATAG+AGG + chr5_3:12439364-12439383 Msa0799280:CDS 35.0%
TCTATTCCTGATGAACATCT+TGG - chr5_3:12439398-12439417 None:intergenic 35.0%
TAGCTTTCTGAACAAGTCAA+TGG + chr5_3:12439550-12439569 Msa0799280:intron 35.0%
ACAAAGCTTAATTCCCATTC+AGG + chr5_3:12439774-12439793 Msa0799280:CDS 35.0%
CAAAGCTTAATTCCCATTCA+GGG + chr5_3:12439775-12439794 Msa0799280:CDS 35.0%
!! AGTTTTATCCTTTCTGTTGC+AGG + chr5_3:12439946-12439965 Msa0799280:intron 35.0%
TGAGTATGCTACATTTGTTC+TGG + chr5_3:12439991-12440010 Msa0799280:CDS 35.0%
GTAAGAGAATTGCTTCATCA+AGG + chr5_3:12440043-12440062 Msa0799280:CDS 35.0%
! TTTAACTTCAAAGTCGTCCA+TGG - chr5_3:12440083-12440102 None:intergenic 35.0%
CATGGAAACTTAATGTTGGT+GGG + chr5_3:12440256-12440275 Msa0799280:CDS 35.0%
TAGAGAAGAACCAATTGCAA+GGG + chr5_3:12440306-12440325 Msa0799280:CDS 35.0%
TACATCAACCTTGAGGATAT+TGG - chr5_3:12440457-12440476 None:intergenic 35.0%
! TTTGGAGTCAATGTCATATG+AGG - chr5_3:12440583-12440602 None:intergenic 35.0%
GACTCCAAATATTGTCATGA+AGG + chr5_3:12440594-12440613 Msa0799280:CDS 35.0%
TGAAGGACTTGATATCAAAG+TGG + chr5_3:12440611-12440630 Msa0799280:CDS 35.0%
AAATCTTCTGTATGTCTACC+TGG - chr5_3:12440667-12440686 None:intergenic 35.0%
AATCACCTCCATTAAGAGTT+TGG + chr5_3:12440705-12440724 Msa0799280:CDS 35.0%
ATCACCTCCATTAAGAGTTT+GGG + chr5_3:12440706-12440725 Msa0799280:CDS 35.0%
CATCAGATTCAAGTCATGAT+TGG - chr5_3:12440830-12440849 None:intergenic 35.0%
CATTGAAGATCATGAAGTTG+AGG - chr5_3:12440934-12440953 None:intergenic 35.0%
CTCAACTTCATGATCTTCAA+TGG + chr5_3:12440932-12440951 Msa0799280:CDS 35.0%
TTGCTCAAAAATCTGACTAC+TGG - chr5_3:12441051-12441070 None:intergenic 35.0%
CAAAGATCAAAATTGGGCAA+GGG - chr5_3:12441164-12441183 None:intergenic 35.0%
ACAAAGATCAAAATTGGGCA+AGG - chr5_3:12441165-12441184 None:intergenic 35.0%
!! GCCCAATTTTGATCTTTGTA+TGG + chr5_3:12441166-12441185 Msa0799280:intron 35.0%
ATCCTCAATCATATCCATGT+CGG - chr5_3:12441386-12441405 None:intergenic 35.0%
AAAATTTGCGTGGATCAACT+TGG - chr5_3:12441450-12441469 None:intergenic 35.0%
! TTTATCTTTGCACCTGCTTT+TGG + chr5_3:12441509-12441528 Msa0799280:intron 35.0%
CTTCTTGATTCAGAAGTGAT+AGG + chr5_3:12441623-12441642 Msa0799280:CDS 35.0%
TCCAGAAAGTTCTTCCATTA+TGG - chr5_3:12441660-12441679 None:intergenic 35.0%
! ACAGCTCTGTCTTTGAAAAA+AGG - chr5_3:12441860-12441879 None:intergenic 35.0%
! ACTTATGCATCCCTTTGTTT+CGG - chr5_3:12441948-12441967 None:intergenic 35.0%
ATTGCTGAAATACTTGAGAG+TGG + chr5_3:12441971-12441990 Msa0799280:CDS 35.0%
! ATTTTCTTCAGGATGACTCT+TGG - chr5_3:12442248-12442267 None:intergenic 35.0%
! TCACCATTTCTGAAGAAACT+AGG + chr5_3:12442283-12442302 Msa0799280:CDS 35.0%
! GGAAATTCATTTTCACCTTC+TGG - chr5_3:12442344-12442363 None:intergenic 35.0%
ATTATGACTTGAGAATGCTG+AGG - chr5_3:12442365-12442384 None:intergenic 35.0%
ATATCCTTGTGATACCATTG+TGG + chr5_3:12442383-12442402 Msa0799280:three_prime_UTR 35.0%
TATCCTTGTGATACCATTGT+GGG + chr5_3:12442384-12442403 Msa0799280:three_prime_UTR 35.0%
ACACACATTCACAAAGATTG+AGG - chr5_3:12442484-12442503 None:intergenic 35.0%
! TAATTTTGGACTGTAACAGC+AGG + chr5_3:12442597-12442616 Msa0799280:three_prime_UTR 35.0%
ATTGTATTGTATAGTGGTGG+TGG + chr5_3:12442627-12442646 Msa0799280:three_prime_UTR 35.0%
GAAGTTGCTTGCATATTTGG+TGG + chr5_3:12438319-12438338 Msa0799280:five_prime_UTR 40.0%
CGGTGAGTTTAACAGAATCA+CGG - chr5_3:12438688-12438707 None:intergenic 40.0%
CTTGTCTGATATGTAGCTGT+GGG + chr5_3:12439005-12439024 Msa0799280:intron 40.0%
!!! CTCCACTTTTTCACCACTAT+TGG - chr5_3:12439050-12439069 None:intergenic 40.0%
TATGTGTACCTGAAAGGAGA+GGG - chr5_3:12439086-12439105 None:intergenic 40.0%
TTATGTGTACCTGAAAGGAG+AGG - chr5_3:12439087-12439106 None:intergenic 40.0%
GTTTCGTAATCAAGCTTACG+AGG + chr5_3:12439585-12439604 Msa0799280:intron 40.0%
TATTACTTTCAGGCTGTGAC+AGG + chr5_3:12439706-12439725 Msa0799280:intron 40.0%
CTTAATTCCCATTCAGGGTA+TGG + chr5_3:12439780-12439799 Msa0799280:CDS 40.0%
TCTAGAAACCTGCAACAGAA+AGG - chr5_3:12439957-12439976 None:intergenic 40.0%
!!! GTCTTCTTTTTCGGGTCATT+TGG - chr5_3:12440202-12440221 None:intergenic 40.0%
GCATGGAAACTTAATGTTGG+TGG + chr5_3:12440255-12440274 Msa0799280:CDS 40.0%
GTAGAGAAGAACCAATTGCA+AGG + chr5_3:12440305-12440324 Msa0799280:CDS 40.0%
CTAGAGTTATCCCTTGCAAT+TGG - chr5_3:12440319-12440338 None:intergenic 40.0%
GATTTCTTCGTCGAGAATCA+CGG - chr5_3:12440342-12440361 None:intergenic 40.0%
ATTGGACACTTGTATTCCTC+AGG - chr5_3:12440439-12440458 None:intergenic 40.0%
ACAAGTGTCCAATATCCTCA+AGG + chr5_3:12440446-12440465 Msa0799280:CDS 40.0%
AGGATCATACATCAACCTTG+AGG - chr5_3:12440464-12440483 None:intergenic 40.0%
GATCCTGTTATCATTGCTTC+TGG + chr5_3:12440478-12440497 Msa0799280:CDS 40.0%
ACTCCAGAAGCAATGATAAC+AGG - chr5_3:12440484-12440503 None:intergenic 40.0%
ACTTCCCAAACTCTTAATGG+AGG - chr5_3:12440713-12440732 None:intergenic 40.0%
CAATGATCTGAACTTGCCAA+TGG + chr5_3:12440738-12440757 Msa0799280:CDS 40.0%
! GACATGTTGGTAAGATCCAT+TGG - chr5_3:12440757-12440776 None:intergenic 40.0%
GATCTTACCAACATGTCACT+TGG + chr5_3:12440760-12440779 Msa0799280:CDS 40.0%
CAATGATCCAAGTGACATGT+TGG - chr5_3:12440770-12440789 None:intergenic 40.0%
! CAACATGTCACTTGGATCAT+TGG + chr5_3:12440768-12440787 Msa0799280:CDS 40.0%
!! GGTCTTAACTTGTGACACAT+CGG - chr5_3:12440809-12440828 None:intergenic 40.0%
!! AGGAGAAGTACTTGCCATAA+TGG + chr5_3:12441643-12441662 Msa0799280:CDS 40.0%
! GCCATAATGGAAGAACTTTC+TGG + chr5_3:12441656-12441675 Msa0799280:CDS 40.0%
! ATGGAAGAACTTTCTGGAGA+TGG + chr5_3:12441662-12441681 Msa0799280:CDS 40.0%
! TGCATTGGATGCTGCAATTT+TGG - chr5_3:12441699-12441718 None:intergenic 40.0%
TAAGACAGAAGTGAGTGCAT+TGG - chr5_3:12441714-12441733 None:intergenic 40.0%
TGGACAAACTTCACTGTTGT+AGG - chr5_3:12441801-12441820 None:intergenic 40.0%
CAATTGACAGATACCATGTG+TGG - chr5_3:12441821-12441840 None:intergenic 40.0%
!! GTTGGTAATAATTGGCTGAG+AGG - chr5_3:12442209-12442228 None:intergenic 40.0%
GGAATCTGTAGAACTGTTGT+TGG - chr5_3:12442227-12442246 None:intergenic 40.0%
ATCCTTGTGATACCATTGTG+GGG + chr5_3:12442385-12442404 Msa0799280:three_prime_UTR 40.0%
ATGCTTGATAAGAGCCAGTT+TGG + chr5_3:12442422-12442441 Msa0799280:three_prime_UTR 40.0%
TAAGAGCCAGTTTGGATTGA+TGG + chr5_3:12442430-12442449 Msa0799280:three_prime_UTR 40.0%
TGCTATCCATCAATCCAAAC+TGG - chr5_3:12442439-12442458 None:intergenic 40.0%
GTGGTGGTTATGTTTACAGT+AGG + chr5_3:12442649-12442668 Msa0799280:three_prime_UTR 40.0%
! GAAACTGGTCTCTAGTATGT+TGG - chr5_3:12442740-12442759 None:intergenic 40.0%
CCACAGCTACATATCAGACA+AGG - chr5_3:12439007-12439026 None:intergenic 45.0%
CCTTGTCTGATATGTAGCTG+TGG + chr5_3:12439004-12439023 Msa0799280:intron 45.0%
TCCAAATACCCTCTCCTTTC+AGG + chr5_3:12439075-12439094 Msa0799280:CDS 45.0%
!! ACCTGAAAGGAGAGGGTATT+TGG - chr5_3:12439079-12439098 None:intergenic 45.0%
GGAATGCAGCAAACTTTACC+TGG + chr5_3:12439478-12439497 Msa0799280:CDS 45.0%
ACTGGAACCATACCCTGAAT+GGG - chr5_3:12439790-12439809 None:intergenic 45.0%
TCTGGATTCTGCTGAAGAAG+AGG + chr5_3:12440009-12440028 Msa0799280:CDS 45.0%
ATTCTGCTGAAGAAGAGGCT+GGG + chr5_3:12440014-12440033 Msa0799280:CDS 45.0%
AGGTTCAACCTCAGATTCCA+TGG + chr5_3:12440063-12440082 Msa0799280:CDS 45.0%
AAAGTCGTCCATGGAATCTG+AGG - chr5_3:12440074-12440093 None:intergenic 45.0%
! AATGTTGGTGGGAGAACACA+TGG + chr5_3:12440267-12440286 Msa0799280:CDS 45.0%
GATGAATCAGTCGGATAGAG+TGG + chr5_3:12440408-12440427 Msa0799280:CDS 45.0%
ATGTCTACCTGGATCAGGAA+TGG - chr5_3:12440656-12440675 None:intergenic 45.0%
TCTGTATGTCTACCTGGATC+AGG - chr5_3:12440661-12440680 None:intergenic 45.0%
GCATGAACTGTATGCTTGTG+AGG - chr5_3:12440880-12440899 None:intergenic 45.0%
CTGACACTGACAAAGTAGCT+TGG - chr5_3:12441011-12441030 None:intergenic 45.0%
GAGCAATGCAAATGATCAGC+AGG + chr5_3:12441065-12441084 Msa0799280:CDS 45.0%
CGGAATTTGTGAACAACTGC+AGG + chr5_3:12441124-12441143 Msa0799280:CDS 45.0%
TATCCATGTCGGACAACCTT+AGG - chr5_3:12441375-12441394 None:intergenic 45.0%
GTCCGACATGGATATGATTG+AGG + chr5_3:12441381-12441400 Msa0799280:intron 45.0%
CAGTGAAGTTTGTCCACACA+TGG + chr5_3:12441805-12441824 Msa0799280:CDS 45.0%
!! TAAAGGAAAGGAAAGTGCCG+TGG + chr5_3:12442132-12442151 Msa0799280:CDS 45.0%
!! CTTCTGGGTTTTGATGCATG+TGG - chr5_3:12442328-12442347 None:intergenic 45.0%
CACATGCATCAAAACCCAGA+AGG + chr5_3:12442326-12442345 Msa0799280:CDS 45.0%
TCCTTGTGATACCATTGTGG+GGG + chr5_3:12442386-12442405 Msa0799280:three_prime_UTR 45.0%
GATATGTATTCCCCCCACAA+TGG - chr5_3:12442400-12442419 None:intergenic 45.0%
!! GTATTGTATAGTGGTGGTGG+TGG + chr5_3:12442630-12442649 Msa0799280:three_prime_UTR 45.0%
! ACAGTAGGCACTGTAACAGT+AGG + chr5_3:12442664-12442683 Msa0799280:three_prime_UTR 45.0%
! CAGTAGGCACTGTAACAGTA+GGG + chr5_3:12442665-12442684 Msa0799280:three_prime_UTR 45.0%
CTAGTATGTTGGCAGGAAGA+GGG - chr5_3:12442729-12442748 None:intergenic 45.0%
TCTAGTATGTTGGCAGGAAG+AGG - chr5_3:12442730-12442749 None:intergenic 45.0%
GCACGTCCAAGATGTTCATC+AGG + chr5_3:12439389-12439408 Msa0799280:CDS 50.0%
GACTGGAACCATACCCTGAA+TGG - chr5_3:12439791-12439810 None:intergenic 50.0%
GGGTATGGTTCCAGTCATGT+TGG + chr5_3:12439795-12439814 Msa0799280:CDS 50.0%
! TCCAGTCATGTTGGCTGTAG+AGG + chr5_3:12439804-12439823 Msa0799280:CDS 50.0%
ACCTCTACAGCCAACATGAC+TGG - chr5_3:12439808-12439827 None:intergenic 50.0%
GATTCTGCTGAAGAAGAGGC+TGG + chr5_3:12440013-12440032 Msa0799280:CDS 50.0%
GGACACTTGTATTCCTCAGG+TGG - chr5_3:12440436-12440455 None:intergenic 50.0%
TTCCGACAGAAGCTGAGTTC+CGG - chr5_3:12441109-12441128 None:intergenic 50.0%
GTTCCTAAGGTTGTCCGACA+TGG + chr5_3:12441369-12441388 Msa0799280:intron 50.0%
TGCGTGGATCAACTTGGTTG+CGG - chr5_3:12441444-12441463 None:intergenic 50.0%
CCTTGTGATACCATTGTGGG+GGG + chr5_3:12442387-12442406 Msa0799280:three_prime_UTR 50.0%
!! TTGTATAGTGGTGGTGGTGG+TGG + chr5_3:12442633-12442652 Msa0799280:three_prime_UTR 50.0%
GTTGGCAGGAAGAGGGAAAA+GGG - chr5_3:12442722-12442741 None:intergenic 50.0%
TGTTGGCAGGAAGAGGGAAA+AGG - chr5_3:12442723-12442742 None:intergenic 50.0%
CTGGTCTCTAGTATGTTGGC+AGG - chr5_3:12442736-12442755 None:intergenic 50.0%
GGACGTGCTTCCTCTATGTC+TGG - chr5_3:12439377-12439396 None:intergenic 55.0%
GGTGTCTCCATTCCTGATCC+AGG + chr5_3:12440646-12440665 Msa0799280:CDS 55.0%
!! GACGTAAAAGCGCTGAGAGC+CGG + chr5_3:12441087-12441106 Msa0799280:CDS 55.0%
AGCCGGAACTCAGCTTCTGT+CGG + chr5_3:12441104-12441123 Msa0799280:CDS 55.0%
CCCCCCACAATGGTATCACA+AGG - chr5_3:12442390-12442409 None:intergenic 55.0%
GGATAGAGTGGCACCACCTG+AGG + chr5_3:12440420-12440439 Msa0799280:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 12438003 12442876 12438003 ID=Msa0799280;Name=Msa0799280
chr5_3 mRNA 12438003 12442876 12438003 ID=Msa0799280-mRNA-1;Parent=Msa0799280;Name=Msa0799280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=408|1|1|1|0.8|0.83|6|525|768
chr5_3 exon 12438003 12438391 12438003 ID=Msa0799280-mRNA-1:exon:5100;Parent=Msa0799280-mRNA-1
chr5_3 exon 12439021 12439096 12439021 ID=Msa0799280-mRNA-1:exon:5101;Parent=Msa0799280-mRNA-1
chr5_3 exon 12439314 12439499 12439314 ID=Msa0799280-mRNA-1:exon:5102;Parent=Msa0799280-mRNA-1
chr5_3 exon 12439718 12439825 12439718 ID=Msa0799280-mRNA-1:exon:5103;Parent=Msa0799280-mRNA-1
chr5_3 exon 12439968 12441145 12439968 ID=Msa0799280-mRNA-1:exon:5104;Parent=Msa0799280-mRNA-1
chr5_3 exon 12441574 12442876 12441574 ID=Msa0799280-mRNA-1:exon:5105;Parent=Msa0799280-mRNA-1
chr5_3 five_prime_UTR 12438003 12438391 12438003 ID=Msa0799280-mRNA-1:five_prime_utr;Parent=Msa0799280-mRNA-1
chr5_3 five_prime_UTR 12439021 12439039 12439021 ID=Msa0799280-mRNA-1:five_prime_utr;Parent=Msa0799280-mRNA-1
chr5_3 CDS 12439040 12439096 12439040 ID=Msa0799280-mRNA-1:cds;Parent=Msa0799280-mRNA-1
chr5_3 CDS 12439314 12439499 12439314 ID=Msa0799280-mRNA-1:cds;Parent=Msa0799280-mRNA-1
chr5_3 CDS 12439718 12439825 12439718 ID=Msa0799280-mRNA-1:cds;Parent=Msa0799280-mRNA-1
chr5_3 CDS 12439968 12441145 12439968 ID=Msa0799280-mRNA-1:cds;Parent=Msa0799280-mRNA-1
chr5_3 CDS 12441574 12442351 12441574 ID=Msa0799280-mRNA-1:cds;Parent=Msa0799280-mRNA-1
chr5_3 three_prime_UTR 12442352 12442876 12442352 ID=Msa0799280-mRNA-1:three_prime_utr;Parent=Msa0799280-mRNA-1
Gene Sequence

>Msa0799280

ATGAGAACCAATAGTGGTGAAAAAGTGGAGACTTTTCCAAATACCCTCTCCTTTCAGGTACATAGTAAAATATGCATAGAATTGATGAAAATAGTGGACAGCATCATGAGAATATTTCCAGACATAGAGGAAGCACGTCCAAGATGTTCATCAGGAATAGAGTCTCTATGTTTTCTGAACAACTCAATTGAGAAAGCTAAATTACTTCTTCAACATTGCTCGGAATGCAGCAAACTTTACCTGGCTGTGACAGGAGAAACAGTACTTTCGAGATGCCAAAAAGCGAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTCATGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTATGCTACATTTGTTCTGGATTCTGCTGAAGAAGAGGCTGGGAGAGTTGTAAGAGAATTGCTTCATCAAGGTTCAACCTCAGATTCCATGGACGACTTTGAAGTTAAAGCTCTTCAGTTTGCAGCACCAAGACTGAATATAACATCTCAAAAGGCCATTTTAATCGAGAAACGATCTATCAAGAAGTTTCTAGATAAAGTTGGACCAAATGACCCGAAAAAGAAGACAATCTTGAGATATCTTATGTATCTAATGAAAAAGCATGGAAACTTAATGTTGGTGGGAGAACACATGGATAATTTTTATTCTCGTAGAGAAGAACCAATTGCAAGGGATAACTCTAGCCGTGATTCTCGACGAAGAAATCGTGTTGAGTCAGATCATAGCATGAACTATGATCAGCATAAAACTGAGATGAATCAGTCGGATAGAGTGGCACCACCTGAGGAATACAAGTGTCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGAATGTGGATAAGAAAGTGGATTAATGAGGGTAAAACTATATGTCCAAAAACAAAAAAGGAACTACCTCATATGACATTGACTCCAAATATTGTCATGAAGGACTTGATATCAAAGTGGTGCAAAAATAATGGTGTCTCCATTCCTGATCCAGGTAGACATACAGAAGATTTTATGTTGTTGGATGCTTCAATCACCTCCATTAAGAGTTTGGGAAGTTATTTCAATGATCTGAACTTGCCAATGGATCTTACCAACATGTCACTTGGATCATTGGATAATAGTTTTAGTTCCGATGTGTCACAAGTTAAGACCAATCATGACTTGAATCTGATGATGATCAAGAGTAATGAAAATTCTCAGCCTCACAAGCATACAGTTCATGCAGAGATACATGATACAGATTTGATGCTCTTGCCTCAACTTCATGATCTTCAATGGGATTCTCAATGTAAGATCATTGAAGATTTGAAAGATCATATGAAAAGCAATAGCCAAGCTACTTTGTCAGTGTCAGCTGAAAATTTAGTTGAACCAGTAGTCAGATTTTTGAGCAATGCAAATGATCAGCAGGACGTAAAAGCGCTGAGAGCCGGAACTCAGCTTCTGTCGGAATTTGTGAACAACTGCAGAAATGGTATGGCTAACCTAAGTGAAGATACGTTCATAAAGTTGGCAAATCTTCTTGATTCAGAAGTGATAGGAGAAGTACTTGCCATAATGGAAGAACTTTCTGGAGATGGAAATAGTAAAGCCAAAATTGCAGCATCCAATGCACTCACTTCTGTCTTAAAGTTACTTGATTCTGATAACAAAGGGTTCCAACAACATGCTATAAGAATAATCTACAATTTGTCCTACAACAGTGAAGTTTGTCCACACATGGTATCTGTCAATTGCATCCCAAAATTGTTACCTTTTTTCAAAGACAGAGCTGTTTTGAGATACTGCATATATATATTGAAAAACATTTGTGATACTGAAGAAGGTAGAAATTCTATTGCCGAAACAAAGGGATGCATAAGTTCTATTGCTGAAATACTTGAGAGTGGAAGTAATGAAGAGCAAGAACATGCACTTGATGTTCTACTATCTTTATGTACATGTTCTCAAAATGTGGATTATCTTAAGTTGATTTTGGATGAAGATATTATCACTCCTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAGGAAAGTGCCGTGGAATTGCTTCATATTTTGAGAGATGCAAAATGTGTTGAGAATGAAGATAGGTCCTCTCAGCCAATTATTACCAACAACAGTTCTACAGATTCCAAGAGTCATCCTGAAGAAAATAGATCATCAAAGAAATCACCATTTCTGAAGAAACTAGGATTGTTCTCGAAATCTACTCCACATGCATCAAAACCCAGAAGGTGA
Protein sequence

>Msa0799280

MRTNSGEKVETFPNTLSFQVHSKICIELMKIVDSIMRIFPDIEEARPRCSSGIESLCFLNNSIEKAKLLLQHCSECSKLYLAVTGETVLSRCQKAKKSLEQSLIPIQGMVPVMLAVEVSRIIDDLEYATFVLDSAEEEAGRVVRELLHQGSTSDSMDDFEVKALQFAAPRLNITSQKAILIEKRSIKKFLDKVGPNDPKKKTILRYLMYLMKKHGNLMLVGEHMDNFYSRREEPIARDNSSRDSRRRNRVESDHSMNYDQHKTEMNQSDRVAPPEEYKCPISSRLMYDPVIIASGVTYERMWIRKWINEGKTICPKTKKELPHMTLTPNIVMKDLISKWCKNNGVSIPDPGRHTEDFMLLDASITSIKSLGSYFNDLNLPMDLTNMSLGSLDNSFSSDVSQVKTNHDLNLMMIKSNENSQPHKHTVHAEIHDTDLMLLPQLHDLQWDSQCKIIEDLKDHMKSNSQATLSVSAENLVEPVVRFLSNANDQQDVKALRAGTQLLSEFVNNCRNGMANLSEDTFIKLANLLDSEVIGEVLAIMEELSGDGNSKAKIAASNALTSVLKLLDSDNKGFQQHAIRIIYNLSYNSEVCPHMVSVNCIPKLLPFFKDRAVLRYCIYILKNICDTEEGRNSIAETKGCISSIAEILESGSNEEQEHALDVLLSLCTCSQNVDYLKLILDEDIITPLFYISQNGNDKGKESAVELLHILRDAKCVENEDRSSQPIITNNSSTDSKSHPEENRSSKKSPFLKKLGLFSKSTPHASKPRR*