AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609170 MtrunA17_Chr4g0041581 94.737 456 23 1 1 455 1 456 0.0 873
Msa0609170 MtrunA17_Chr7g0231671 54.803 458 195 6 5 451 1 457 8.25e-152 441
Msa0609170 MtrunA17_Chr5g0416781 56.114 458 189 6 5 451 1 457 9.09e-152 441
Msa0609170 MtrunA17_Chr3g0096461 47.021 470 233 6 1 455 1 469 1.02e-122 366
Msa0609170 MtrunA17_Chr4g0041631 46.008 476 228 8 1 455 1 468 1.42e-121 363
Msa0609170 MtrunA17_Chr4g0041601 44.563 469 234 8 1 448 1 464 1.78e-111 337
Msa0609170 MtrunA17_Chr7g0222771 50.311 322 148 6 1 312 1 320 3.75e-88 272
Msa0609170 MtrunA17_Chr7g0222761 47.297 370 183 8 1 360 1 368 9.27e-87 270
Msa0609170 MtrunA17_Chr2g0326831 42.217 469 224 16 21 448 67 529 4.59e-83 265
Msa0609170 MtrunA17_Chr7g0231691 42.931 389 210 5 74 451 47 434 3.20e-82 260
Msa0609170 MtrunA17_Chr4g0073451 56.604 159 66 1 292 447 1 159 1.72e-52 174
Msa0609170 MtrunA17_Chr4g0041661 48.585 212 105 2 240 448 3 213 1.08e-51 173
Msa0609170 MtrunA17_Chr4g0041681 37.500 312 174 9 13 316 7 305 1.43e-41 150
Msa0609170 MtrunA17_Chr5g0394131 27.766 461 270 12 9 418 3 451 4.85e-33 130
Msa0609170 MtrunA17_Chr5g0416751 69.118 68 21 0 1 68 1 68 1.19e-27 105
Msa0609170 MtrunA17_Chr2g0313941 25.917 436 308 11 15 441 5 434 8.37e-26 109
Msa0609170 MtrunA17_Chr5g0416761 41.333 150 84 1 306 451 1 150 1.04e-25 102
Msa0609170 MtrunA17_Chr5g0435741 27.765 425 276 15 6 419 17 421 5.53e-23 101
Msa0609170 MtrunA17_Chr4g0023311 24.494 494 290 18 23 445 32 513 7.54e-23 101
Msa0609170 MtrunA17_Chr4g0041671 59.722 72 29 0 5 76 1 72 2.70e-22 91.3
Msa0609170 MtrunA17_Chr1g0191321 40.278 144 83 1 73 213 23 166 3.23e-21 90.9
Msa0609170 MtrunA17_Chr8g0362021 28.211 436 259 18 14 418 11 423 1.50e-20 94.0
Msa0609170 MtrunA17_Chr5g0438191 26.055 403 272 10 23 419 13 395 4.98e-20 92.0
Msa0609170 MtrunA17_Chr7g0259181 26.292 445 263 17 12 420 19 434 1.83e-17 84.7
Msa0609170 MtrunA17_Chr2g0319411 26.211 351 234 12 22 355 21 363 1.33e-16 81.3
Msa0609170 MtrunA17_Chr4g0073461 55.738 61 24 1 1 61 1 58 1.33e-15 71.2
Msa0609170 MtrunA17_Chr7g0224001 24.888 446 222 16 23 434 14 380 1.59e-15 78.2
Msa0609170 MtrunA17_Chr0c03g0490011 26.303 422 252 18 23 423 8 391 1.62e-15 78.2
Msa0609170 MtrunA17_Chr7g0255101 24.242 429 237 15 17 429 104 460 9.71e-15 76.3
Msa0609170 MtrunA17_Chr1g0197661 25.858 379 241 11 15 359 11 383 1.72e-14 75.1
Msa0609170 MtrunA17_Chr6g0457681 24.444 360 215 11 12 338 44 379 4.84e-14 73.9
Msa0609170 MtrunA17_Chr5g0438051 22.826 460 249 15 22 445 5 394 8.01e-14 73.2
Msa0609170 MtrunA17_Chr7g0246351 24.122 427 231 17 22 419 5 367 1.04e-13 72.4
Msa0609170 MtrunA17_Chr3g0138571 24.471 425 233 16 22 429 12 365 1.18e-13 72.4
Msa0609170 MtrunA17_Chr3g0137681 31.373 204 103 7 20 202 7 194 3.57e-13 70.9
Msa0609170 MtrunA17_Chr3g0085941 26.703 367 226 13 12 352 2 351 4.08e-13 70.5
Msa0609170 MtrunA17_Chr5g0415991 30.631 222 140 9 14 226 6 222 4.32e-13 70.9
Msa0609170 MtrunA17_Chr8g0366411 28.049 328 219 9 16 335 73 391 4.39e-13 70.9
Msa0609170 MtrunA17_Chr2g0325431 24.594 431 257 16 23 423 19 411 4.76e-13 70.9
Msa0609170 MtrunA17_Chr2g0314171 24.017 458 304 16 11 444 31 468 7.24e-13 70.5
Msa0609170 MtrunA17_Chr3g0138371 23.131 428 240 17 17 429 14 367 7.68e-13 69.7
Msa0609170 MtrunA17_Chr1g0148651 28.169 213 128 6 18 226 2 193 1.42e-12 69.7
Msa0609170 MtrunA17_Chr7g0236211 24.884 430 232 16 20 429 9 367 1.43e-12 68.9
Msa0609170 MtrunA17_Chr5g0421501 30.542 203 124 8 14 205 6 202 1.53e-12 68.9
Msa0609170 MtrunA17_Chr1g0164901 28.022 364 215 15 23 359 9 352 2.00e-12 68.6
Msa0609170 MtrunA17_Chr8g0360071 26.471 442 268 18 14 419 4 424 2.61e-12 68.6
Msa0609170 MtrunA17_Chr8g0362521 25.059 427 273 18 21 418 13 421 3.37e-12 68.2
Msa0609170 MtrunA17_Chr6g0486911 27.356 329 215 12 22 338 21 337 4.36e-12 67.8
Msa0609170 MtrunA17_Chr1g0148661 27.876 226 151 6 23 239 18 240 4.95e-12 66.6
Msa0609170 MtrunA17_Chr2g0326701 36.872 179 83 9 195 362 17 176 6.98e-12 64.3
Msa0609170 MtrunA17_Chr2g0319401 27.083 240 145 9 9 231 15 241 1.27e-11 65.9
Msa0609170 MtrunA17_Chr1g0154471 28.378 222 124 8 23 226 17 221 1.44e-11 66.2
Msa0609170 MtrunA17_Chr2g0303191 24.700 417 261 15 23 416 7 393 3.74e-11 64.7
Msa0609170 MtrunA17_Chr1g0154461 30.263 228 132 10 23 232 28 246 4.35e-11 64.7
Msa0609170 MtrunA17_Chr1g0149921 27.876 226 145 9 23 234 43 264 7.95e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609170 AT4G14096.2 27.887 459 285 16 22 450 7 449 4.07e-30 122
Msa0609170 AT4G14096.1 27.887 459 285 16 22 450 7 449 4.07e-30 122
Msa0609170 AT3G58880.1 28.736 435 257 17 21 419 1 418 1.06e-28 118
Msa0609170 AT3G59210.2 29.590 463 264 17 22 441 6 449 1.15e-28 118
Msa0609170 AT3G59210.1 29.590 463 264 17 22 441 6 449 1.15e-28 118
Msa0609170 AT3G59210.5 29.590 463 264 17 22 441 6 449 1.15e-28 118
Msa0609170 AT3G59210.4 29.590 463 264 17 22 441 6 449 1.15e-28 118
Msa0609170 AT3G59210.3 29.590 463 264 17 22 441 6 449 1.15e-28 118
Msa0609170 AT3G58860.1 28.160 451 290 15 23 451 7 445 6.42e-28 115
Msa0609170 AT5G53840.1 27.907 430 288 13 19 441 14 428 7.72e-27 112
Msa0609170 AT4G13965.1 26.606 436 281 15 23 446 10 418 1.70e-25 108
Msa0609170 AT1G78840.1 29.216 421 253 16 22 418 4 403 2.52e-25 108
Msa0609170 AT1G78840.2 29.216 421 253 16 22 418 4 403 2.52e-25 108
Msa0609170 AT3G58900.4 28.472 432 265 14 23 419 2 424 2.92e-25 108
Msa0609170 AT4G14103.3 28.291 357 232 11 22 361 7 356 3.07e-25 107
Msa0609170 AT4G14103.1 28.291 357 232 11 22 361 7 356 3.07e-25 107
Msa0609170 AT4G14103.2 26.444 450 278 16 22 450 7 424 3.72e-25 107
Msa0609170 AT3G03030.1 26.897 435 280 13 23 423 2 432 3.87e-24 105
Msa0609170 AT3G59230.1 26.708 483 286 21 14 446 4 468 8.35e-24 104
Msa0609170 AT1G51370.1 27.918 437 255 18 17 429 13 413 1.33e-23 103
Msa0609170 AT5G44950.1 26.014 419 272 12 22 418 3 405 1.43e-23 103
Msa0609170 AT1G55030.2 25.301 415 263 15 16 414 12 395 1.81e-23 102
Msa0609170 AT3G59200.1 26.050 476 262 19 22 434 6 454 1.83e-23 103
Msa0609170 AT1G32375.2 26.859 417 256 15 23 418 2 390 1.84e-23 102
Msa0609170 AT1G32375.1 26.859 417 256 15 23 418 2 390 1.84e-23 102
Msa0609170 AT1G55030.1 25.180 417 261 15 16 414 2 385 2.15e-23 102
Msa0609170 AT1G66290.1 25.891 421 287 13 19 428 25 431 3.17e-23 102
Msa0609170 AT4G22280.1 30.966 352 209 12 23 361 2 332 1.31e-22 100
Msa0609170 AT5G25860.1 26.824 425 264 13 22 418 11 416 1.63e-22 100
Msa0609170 AT5G56420.1 24.938 401 273 11 22 414 5 385 2.32e-22 99.4
Msa0609170 AT5G56420.2 24.938 401 273 11 22 414 5 385 2.32e-22 99.4
Msa0609170 AT5G56420.3 24.938 401 273 11 22 414 5 385 2.32e-22 99.4
Msa0609170 AT4G22280.2 30.857 350 208 12 23 359 2 330 2.85e-22 97.8
Msa0609170 AT3G50710.1 25.843 445 281 16 23 445 2 419 4.71e-22 98.6
Msa0609170 AT2G42730.1 26.353 425 279 13 20 418 2 418 6.53e-22 98.2
Msa0609170 AT3G03040.1 26.147 436 269 16 23 419 2 423 6.86e-22 98.6
Msa0609170 AT3G59240.1 26.351 444 286 15 22 433 7 441 7.70e-22 98.6
Msa0609170 AT1G66300.1 25.175 429 292 14 19 433 25 438 2.09e-21 96.7
Msa0609170 AT1G13780.1 25.216 464 294 17 23 451 10 455 2.54e-21 96.7
Msa0609170 AT3G28410.1 26.444 329 205 13 12 328 19 322 3.23e-21 96.3
Msa0609170 AT3G26922.1 28.030 264 179 6 15 273 6 263 8.96e-21 92.8
Msa0609170 AT3G26922.2 28.030 264 179 6 15 273 6 263 8.96e-21 92.8
Msa0609170 AT3G59250.1 27.952 415 249 14 22 419 6 387 1.73e-20 94.0
Msa0609170 AT1G16930.2 24.703 421 280 13 23 418 15 423 3.08e-20 93.2
Msa0609170 AT1G16930.1 24.703 421 280 13 23 418 15 423 3.08e-20 93.2
Msa0609170 AT1G16930.3 24.703 421 280 13 23 418 15 423 3.08e-20 93.2
Msa0609170 AT5G53635.1 28.333 420 259 15 24 418 1 403 3.75e-20 92.8
Msa0609170 AT1G58310.1 27.979 386 228 13 17 361 2 378 5.11e-20 92.8
Msa0609170 AT3G59170.1 29.337 392 218 14 22 361 6 390 5.73e-20 92.8
Msa0609170 AT5G38590.2 24.886 438 286 13 23 446 2 410 6.02e-20 92.0
Msa0609170 AT5G56440.1 26.392 413 270 10 23 418 2 397 7.30e-20 92.0
Msa0609170 AT4G10400.2 25.799 438 282 14 23 449 2 407 8.11e-20 91.7
Msa0609170 AT4G10400.3 25.799 438 282 14 23 449 2 407 8.11e-20 91.7
Msa0609170 AT4G10400.1 25.799 438 282 14 23 449 2 407 8.11e-20 91.7
Msa0609170 AT1G06630.5 28.249 354 225 12 22 359 11 351 9.13e-20 90.9
Msa0609170 AT1G06630.8 28.249 354 225 12 22 359 11 351 9.13e-20 90.9
Msa0609170 AT4G00315.1 31.667 240 144 8 23 252 2 231 1.08e-19 91.7
Msa0609170 AT2G29930.3 27.460 437 266 21 14 418 4 421 1.20e-19 91.7
Msa0609170 AT2G29930.1 27.460 437 266 21 14 418 4 421 1.20e-19 91.7
Msa0609170 AT1G51370.2 31.111 225 119 7 17 226 13 216 1.73e-19 89.7
Msa0609170 AT5G02700.1 26.911 327 207 13 11 328 17 320 2.11e-19 90.9
Msa0609170 AT5G22720.1 27.021 433 254 16 22 416 22 430 2.37e-19 90.9
Msa0609170 AT3G49030.1 24.831 443 285 19 22 445 20 433 2.63e-19 90.5
Msa0609170 AT1G51370.3 31.111 225 119 7 17 226 13 216 3.14e-19 90.1
Msa0609170 AT1G06630.2 28.249 354 225 12 22 359 11 351 3.17e-19 89.7
Msa0609170 AT1G06630.6 28.249 354 225 12 22 359 11 351 3.17e-19 89.7
Msa0609170 AT1G06630.4 28.249 354 225 12 22 359 11 351 3.17e-19 89.7
Msa0609170 AT1G06630.3 28.249 354 225 12 22 359 11 351 3.17e-19 89.7
Msa0609170 AT1G06630.9 28.249 354 225 12 22 359 20 360 3.72e-19 89.7
Msa0609170 AT5G41840.1 29.275 386 223 15 18 361 9 386 3.99e-19 90.5
Msa0609170 AT3G58960.1 26.106 452 263 18 23 419 2 437 5.32e-19 89.7
Msa0609170 AT3G58980.1 26.862 443 273 17 23 431 2 427 6.36e-19 90.1
Msa0609170 AT1G06630.1 28.249 354 225 12 22 359 11 351 6.86e-19 89.4
Msa0609170 AT5G38590.1 31.754 211 134 5 23 228 2 207 8.49e-19 87.0
Msa0609170 AT3G44060.1 24.194 434 307 11 28 451 4 425 8.85e-19 88.6
Msa0609170 AT5G56400.1 24.887 442 298 10 23 451 33 453 1.21e-18 88.6
Msa0609170 AT5G56380.2 25.792 442 290 16 23 443 2 426 1.26e-18 88.2
Msa0609170 AT5G56380.1 25.792 442 290 16 23 443 2 426 1.26e-18 88.2
Msa0609170 AT1G78750.2 25.604 414 285 14 23 418 18 426 1.48e-18 88.2
Msa0609170 AT1G78750.1 25.604 414 285 14 23 418 18 426 1.48e-18 88.2
Msa0609170 AT1G66320.1 25.400 437 290 16 17 434 23 442 2.04e-18 87.8
Msa0609170 AT3G59000.1 26.027 438 269 15 23 419 2 425 4.70e-18 87.0
Msa0609170 AT3G58930.3 25.397 441 277 14 23 419 2 434 6.18e-18 86.7
Msa0609170 AT3G58930.1 25.397 441 277 14 23 419 2 434 6.18e-18 86.7
Msa0609170 AT3G58930.5 25.397 441 277 14 23 419 2 434 6.18e-18 86.7
Msa0609170 AT3G59160.1 27.436 390 225 12 22 361 12 393 8.17e-18 85.9
Msa0609170 AT5G22670.1 25.971 412 279 12 22 418 10 410 9.72e-18 85.5
Msa0609170 AT5G22730.1 23.855 415 287 10 22 416 27 432 1.34e-17 85.5
Msa0609170 AT5G22730.3 23.855 415 287 10 22 416 27 432 1.34e-17 85.5
Msa0609170 AT5G02930.1 26.791 321 203 13 23 328 28 331 1.42e-17 85.5
Msa0609170 AT4G00160.1 25.169 445 287 15 22 445 15 434 1.58e-17 85.1
Msa0609170 AT3G59190.2 26.817 399 252 15 22 388 11 401 2.02e-17 85.1
Msa0609170 AT5G56810.2 26.568 271 179 7 15 273 5 267 3.15e-17 82.8
Msa0609170 AT3G58900.3 29.114 316 197 10 23 314 2 314 3.35e-17 82.8
Msa0609170 AT5G56810.1 24.009 454 300 14 15 450 5 431 3.93e-17 84.0
Msa0609170 AT3G52680.1 26.364 440 275 18 22 441 20 430 4.92e-17 83.6
Msa0609170 AT5G22660.2 26.202 416 275 13 22 418 12 414 5.02e-17 83.6
Msa0609170 AT3G60040.2 25.112 446 291 15 22 443 231 657 5.46e-17 84.0
Msa0609170 AT3G60040.5 25.112 446 291 15 22 443 229 655 5.74e-17 84.0
Msa0609170 AT3G60040.4 25.112 446 291 15 22 443 12 438 5.90e-17 84.0
Msa0609170 AT4G10420.1 26.599 297 178 11 135 418 22 291 5.93e-17 82.0
Msa0609170 AT3G59190.1 27.614 373 232 15 14 357 4 367 6.05e-17 82.8
Msa0609170 AT1G69630.1 25.995 427 284 15 11 418 6 419 6.09e-17 83.2
Msa0609170 AT3G60040.1 25.112 446 291 15 22 443 231 657 6.68e-17 84.0
Msa0609170 AT3G60040.3 25.112 446 291 15 22 443 232 658 7.11e-17 84.0
Msa0609170 AT3G26922.4 26.718 262 160 5 15 273 6 238 7.97e-17 80.9
Msa0609170 AT3G58900.2 28.981 314 196 10 23 312 2 312 8.21e-17 81.6
Msa0609170 AT3G58900.1 28.981 314 196 10 23 312 2 312 8.21e-17 81.6
Msa0609170 AT1G55660.2 30.137 219 139 7 18 226 48 262 8.32e-17 82.0
Msa0609170 AT5G44980.2 22.951 427 302 12 22 431 3 419 8.89e-17 82.8
Msa0609170 AT5G44980.1 22.951 427 302 12 22 431 3 419 8.89e-17 82.8
Msa0609170 AT5G41830.2 25.558 403 241 16 22 383 12 396 1.10e-16 82.8
Msa0609170 AT1G55660.1 30.415 217 141 6 18 226 48 262 1.21e-16 82.4
Msa0609170 AT3G26930.2 25.121 414 267 14 22 416 20 409 1.38e-16 82.0
Msa0609170 AT5G56390.1 26.442 416 246 18 41 429 21 403 2.41e-16 81.3
Msa0609170 AT1G66310.1 26.540 422 279 16 12 418 8 413 3.01e-16 81.3
Msa0609170 AT5G50270.1 26.714 423 253 16 23 418 2 394 3.74e-16 80.5
Msa0609170 AT5G27750.1 21.806 454 307 15 23 441 5 445 6.95e-16 80.1
Msa0609170 AT2G42720.1 27.072 362 226 11 23 361 2 348 1.12e-15 79.3
Msa0609170 AT4G13960.2 25.581 430 272 14 23 419 2 416 1.28e-15 79.3
Msa0609170 AT4G13960.1 25.581 430 272 14 23 419 2 416 1.28e-15 79.3
Msa0609170 AT2G26030.4 23.460 422 281 18 23 416 4 411 1.41e-15 79.0
Msa0609170 AT5G60610.2 24.697 413 266 15 23 418 2 386 1.78e-15 78.2
Msa0609170 AT5G60610.1 24.697 413 266 15 23 418 2 386 1.78e-15 78.2
Msa0609170 AT2G26030.3 23.628 419 279 17 23 416 4 406 2.02e-15 78.6
Msa0609170 AT2G26030.1 23.628 419 279 17 23 416 4 406 2.02e-15 78.6
Msa0609170 AT3G52680.2 26.857 350 217 13 22 359 20 342 2.24e-15 77.8
Msa0609170 AT5G56410.1 28.155 206 128 4 36 221 16 221 3.38e-15 78.2
Msa0609170 AT4G13985.1 24.651 430 295 11 19 427 15 436 3.94e-15 77.8
Msa0609170 AT5G56690.1 25.862 406 244 17 25 401 4 381 6.14e-15 77.0
Msa0609170 AT3G49480.2 25.280 447 284 14 10 430 1 423 8.99e-15 76.6
Msa0609170 AT3G49030.2 23.462 439 270 18 22 445 20 407 9.59e-15 76.3
Msa0609170 AT1G78760.1 23.364 428 291 13 22 431 15 423 1.08e-14 76.3
Msa0609170 AT2G04230.1 30.000 220 131 7 22 226 12 223 1.37e-14 75.9
Msa0609170 AT4G09920.2 28.774 212 141 5 23 228 2 209 1.37e-14 74.7
Msa0609170 AT4G09920.4 28.774 212 141 5 23 228 2 209 1.37e-14 74.7
Msa0609170 AT4G09920.3 28.774 212 141 5 23 228 2 209 1.37e-14 74.7
Msa0609170 AT5G56820.1 22.146 438 292 12 23 445 15 418 2.11e-14 75.5
Msa0609170 AT4G27050.2 26.667 375 218 17 23 361 4 357 2.12e-14 75.5
Msa0609170 AT4G27050.3 26.667 375 218 17 23 361 4 357 2.12e-14 75.5
Msa0609170 AT4G27050.5 26.667 375 218 17 23 361 4 357 2.12e-14 75.5
Msa0609170 AT4G27050.4 26.667 375 218 17 23 361 4 357 2.12e-14 75.5
Msa0609170 AT4G27050.1 26.667 375 218 17 23 361 4 357 2.12e-14 75.5
Msa0609170 AT4G15060.2 27.371 369 213 15 17 341 18 375 2.64e-14 75.1
Msa0609170 AT3G59150.1 26.389 432 279 11 23 419 13 440 2.74e-14 75.1
Msa0609170 AT5G02920.1 31.188 202 120 7 11 207 16 203 2.93e-14 73.2
Msa0609170 AT1G60400.1 26.190 336 211 12 17 334 8 324 3.38e-14 74.7
Msa0609170 AT4G09920.1 28.774 212 141 5 23 228 2 209 3.54e-14 73.6
Msa0609170 AT4G09920.5 28.774 212 141 5 23 228 2 209 3.54e-14 73.6
Msa0609170 AT5G38396.1 24.091 440 279 16 23 422 2 426 3.70e-14 74.7
Msa0609170 AT2G26860.1 23.753 421 270 13 23 418 2 396 3.83e-14 74.3
Msa0609170 AT2G26860.2 23.753 421 270 13 23 418 2 396 3.83e-14 74.3
Msa0609170 AT5G15620.1 27.397 438 276 17 23 434 2 423 5.18e-14 74.3
Msa0609170 AT3G26922.3 25.523 239 167 6 40 273 2 234 7.04e-14 72.4
Msa0609170 AT3G26922.5 25.523 239 167 6 40 273 2 234 7.04e-14 72.4
Msa0609170 AT3G44810.1 27.273 319 212 8 28 333 12 323 7.23e-14 73.9
Msa0609170 AT1G06630.7 27.341 267 174 9 22 275 11 270 8.14e-14 72.4
Msa0609170 AT5G35995.2 28.809 361 216 16 22 361 4 344 8.77e-14 73.6
Msa0609170 AT5G35995.1 28.809 361 216 16 22 361 4 344 8.77e-14 73.6
Msa0609170 AT1G13780.2 26.978 278 169 10 23 277 10 276 1.01e-13 72.4
Msa0609170 AT4G00320.1 26.357 387 230 17 22 369 12 382 1.28e-13 73.2
Msa0609170 AT3G03030.2 25.868 317 218 8 23 323 2 317 1.56e-13 72.0
Msa0609170 AT5G56370.1 24.938 405 251 16 23 409 2 371 2.17e-13 72.0
Msa0609170 AT5G56370.2 24.938 405 251 16 23 409 2 371 2.17e-13 72.0
Msa0609170 AT4G26340.1 23.973 438 281 16 23 442 2 405 2.65e-13 72.0
Msa0609170 AT2G29910.5 27.925 265 168 9 22 275 4 256 3.05e-13 71.2
Msa0609170 AT2G29910.7 27.925 265 168 9 22 275 4 256 3.05e-13 71.2
Msa0609170 AT2G29910.4 27.925 265 168 9 22 275 4 256 3.05e-13 71.2
Msa0609170 AT2G29910.1 27.925 265 168 9 22 275 4 256 3.05e-13 71.2
Msa0609170 AT2G29910.6 27.925 265 168 9 22 275 28 280 3.51e-13 71.2
Msa0609170 AT1G52650.1 24.476 429 279 14 23 419 2 417 3.60e-13 71.6
Msa0609170 AT2G29910.3 27.925 265 168 9 22 275 4 256 3.75e-13 70.9
Msa0609170 AT2G29910.2 27.925 265 168 9 22 275 4 256 3.75e-13 70.9
Msa0609170 AT3G62430.1 27.002 437 276 15 23 434 2 420 4.24e-13 71.2
Msa0609170 AT5G44960.1 21.615 421 265 13 23 418 5 385 4.44e-13 71.2
Msa0609170 AT3G51530.1 25.169 445 273 21 22 441 29 438 5.00e-13 71.2
Msa0609170 AT3G49020.1 23.503 451 293 15 13 442 12 431 8.78e-13 70.5
Msa0609170 AT3G26930.1 23.514 387 253 14 49 416 2 364 8.85e-13 70.1
Msa0609170 AT5G56370.3 25.501 349 213 13 23 359 2 315 9.59e-13 69.3
Msa0609170 AT4G03220.1 22.689 476 306 17 23 445 24 490 1.01e-12 70.5
Msa0609170 AT3G49040.1 25.379 264 173 10 22 273 16 267 1.24e-12 68.9
Msa0609170 AT1G13570.2 29.630 216 132 8 18 224 1 205 1.45e-12 68.6
Msa0609170 AT1G16940.1 25.381 197 130 5 23 213 11 196 1.46e-12 69.7
Msa0609170 AT5G41630.1 27.684 354 215 16 17 336 6 352 2.84e-12 68.9
Msa0609170 AT5G02910.2 26.816 358 219 16 20 360 8 339 2.84e-12 68.2
Msa0609170 AT5G22610.2 24.083 436 271 17 21 416 16 431 4.17e-12 68.6
Msa0609170 AT5G02910.3 27.374 358 217 17 20 360 8 339 4.74e-12 67.8
Msa0609170 AT5G02910.1 27.374 358 217 17 20 360 8 339 4.87e-12 68.2
Msa0609170 AT1G13570.3 29.130 230 136 9 18 231 1 219 5.07e-12 67.8
Msa0609170 AT1G13570.1 29.130 230 136 9 18 231 1 219 5.07e-12 67.8
Msa0609170 AT1G21990.1 25.737 373 227 13 22 361 8 363 8.23e-12 67.4
Msa0609170 AT2G29930.2 26.885 305 181 15 145 418 8 301 9.78e-12 66.6
Msa0609170 AT4G15060.1 28.311 219 149 6 23 234 172 389 1.07e-11 67.4
Msa0609170 AT5G22610.1 24.178 426 253 16 21 416 16 401 1.99e-11 66.2
Msa0609170 AT5G38390.1 23.776 429 276 15 23 419 2 411 2.08e-11 66.2
Msa0609170 AT5G56430.1 25.263 285 184 7 145 418 58 324 4.73e-11 64.7
Msa0609170 AT3G49150.1 25.821 457 292 17 22 445 15 457 4.82e-11 65.1
Msa0609170 AT5G44490.1 23.598 428 294 13 22 428 16 431 5.33e-11 65.1
Msa0609170 AT5G44490.2 23.598 428 294 13 22 428 16 431 5.56e-11 64.7
Msa0609170 AT1G80470.1 26.031 388 237 17 23 386 15 376 9.05e-11 64.3
Msa0609170 AT1G80960.3 24.070 457 288 19 5 441 36 453 9.42e-11 64.3

Find 113 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAATTTCTTCACATTTA+TGG 0.090305 4_2:-56546668 Msa0609170:CDS
CAACATGCAGTTCATTATTT+TGG 0.141567 4_2:+56547309 None:intergenic
ACTAAGTTGGATATTGTATT+TGG 0.151222 4_2:-56547695 Msa0609170:CDS
TCAAGAATAGGTTTATATTA+TGG 0.195205 4_2:-56546004 Msa0609170:three_prime_UTR
GACTCTCATTCATTCGTTAC+AGG 0.232211 4_2:+56548611 None:intergenic
GAAAATCAAAGACGGGTAAT+TGG 0.233443 4_2:+56547969 None:intergenic
TAGAATTTCTTCACATTTAT+GGG 0.250696 4_2:-56546667 Msa0609170:CDS
TATCACCCACATTATGTCTT+TGG 0.262830 4_2:+56548110 None:intergenic
ACCTACTATTTCTAGATTCT+AGG 0.280979 4_2:+56547756 None:intergenic
CAAGAATAGGTTTATATTAT+GGG 0.289126 4_2:-56546003 Msa0609170:three_prime_UTR
AAACTTCACCAATCTGATTT+CGG 0.294077 4_2:+56546436 None:intergenic
CCTGCATTAACAATAGTTAC+TGG 0.304860 4_2:+56547839 None:intergenic
GTTGATGCAAATATTGATCT+TGG 0.309181 4_2:-56547344 Msa0609170:CDS
TAGAAAATGTCACGTTCTTA+AGG 0.323129 4_2:-56546409 Msa0609170:CDS
ATGTGAAGAAATTCTAGTTT+AGG 0.324682 4_2:+56546674 None:intergenic
ATCAATATTTGCATCAACTA+TGG 0.332138 4_2:+56547349 None:intergenic
ATTTATTAACCTGTGCCTTA+AGG 0.339336 4_2:+56545964 None:intergenic
GCTATCAGATGAAACTATTC+AGG 0.345809 4_2:-56547234 Msa0609170:intron
TTTATTAACCTGTGCCTTAA+GGG 0.354871 4_2:+56545965 None:intergenic
CCGGGATGCCGAGAAACTAT+TGG 0.361036 4_2:+56547724 None:intergenic
GAACCATTTGTGTCAAGAAT+AGG 0.363162 4_2:-56546016 Msa0609170:three_prime_UTR
ATTCTAGTTTAGGACTCTTT+CGG 0.366674 4_2:+56546684 None:intergenic
TTAGGGATCTTACTTATCCT+TGG 0.372669 4_2:-56546549 Msa0609170:intron
ACAAGGAAACAATTTATAGT+TGG 0.386110 4_2:+56547383 None:intergenic
CAAGGAAACAATTTATAGTT+GGG 0.388932 4_2:+56547384 None:intergenic
GATAACTGGTTAAGTGTTGC+TGG 0.395387 4_2:-56546044 Msa0609170:three_prime_UTR
TGCAGTTCAAACTCTGCGCC+TGG 0.407475 4_2:+56548558 None:intergenic
TGGTTAAGTGTTGCTGGAAA+TGG 0.418387 4_2:-56546038 Msa0609170:three_prime_UTR
AGGAACCAATTGCAAGCTTT+AGG 0.419691 4_2:-56546326 Msa0609170:CDS
TAATAAATCAAATATAGAAA+TGG 0.428077 4_2:-56545949 Msa0609170:three_prime_UTR
CGGGATGCCGAGAAACTATT+GGG 0.428862 4_2:+56547725 None:intergenic
TTGATGCAAATATTGATCTT+GGG 0.429706 4_2:-56547343 Msa0609170:CDS
TTTCTGCCCTAGTCTCTGTA+TGG 0.432516 4_2:-56548638 Msa0609170:five_prime_UTR
AATGCTAACTTGTGCCCTTA+AGG 0.432529 4_2:-56545979 Msa0609170:three_prime_UTR
AAAATCAAAGACGGGTAATT+GGG 0.435838 4_2:+56547970 None:intergenic
CCATGCCTAAAGCTTGCAAT+TGG 0.438162 4_2:+56546321 None:intergenic
TGTGTTACCCAATAGTTTCT+CGG 0.443039 4_2:-56547732 Msa0609170:CDS
AAACCTATTCTTGACACAAA+TGG 0.446961 4_2:+56546013 None:intergenic
CCAGTAACTATTGTTAATGC+AGG 0.451607 4_2:-56547839 Msa0609170:CDS
ACCTAGAATCTAGAAATAGT+AGG 0.456966 4_2:-56547757 Msa0609170:CDS
AGAAAATGTCACGTTCTTAA+GGG 0.467231 4_2:-56546408 Msa0609170:CDS
GGTGACTTAGAATTTCGCTT+TGG 0.469597 4_2:+56547935 None:intergenic
AATTCCAACATTGAAGAAGT+TGG 0.478445 4_2:-56547498 Msa0609170:CDS
TTTATATTCTTACAAATGCA+TGG 0.478662 4_2:+56546093 None:intergenic
TTGGTAGTGTCGAGTCTCTC+AGG 0.484028 4_2:-56547256 Msa0609170:CDS
ACTAGATCTACGAGGCAATC+TGG 0.484619 4_2:+56547914 None:intergenic
TTCTCGTCTCTCTACGGAAG+AGG 0.486845 4_2:-56548038 Msa0609170:CDS
AAGATAATATCTTCAAGCTA+TGG 0.487718 4_2:+56547639 None:intergenic
ATGTCCAACTTCTTCAATGT+TGG 0.494500 4_2:+56547494 None:intergenic
GGTTGGATTTGTGAAGTAGT+TGG 0.497013 4_2:+56547888 None:intergenic
GGATCTTACTTATCCTTGGA+TGG 0.498856 4_2:-56546545 Msa0609170:CDS
TGCCCCACACTAAATCAAAC+AGG 0.498945 4_2:+56546186 None:intergenic
GTGCCTGTTTGATTTAGTGT+GGG 0.504671 4_2:-56546189 Msa0609170:three_prime_UTR
AAGGACAACTCTTGTAAGAC+AGG 0.508600 4_2:+56547560 None:intergenic
TTATATTCTTACAAATGCAT+GGG 0.510615 4_2:+56546094 None:intergenic
TAAACTCCAAAGACATAATG+TGG 0.514913 4_2:-56548116 Msa0609170:CDS
AACTTGTGCCCTTAAGGCAC+AGG 0.516028 4_2:-56545973 Msa0609170:three_prime_UTR
TACCATCAGGTACAGAATCA+AGG 0.516438 4_2:+56547669 None:intergenic
CTAGGTTAAGTGTAAGATCA+TGG 0.524663 4_2:+56547774 None:intergenic
TATCCAACTTAGTCAATGAC+CGG 0.525404 4_2:+56547705 None:intergenic
AATAAAATGAAGAATTCCCT+CGG 0.525571 4_2:+56548063 None:intergenic
CGCATCAAATTCTTGAACGA+AGG 0.528751 4_2:+56546755 None:intergenic
TTCCTTGATTCTGTACCTGA+TGG 0.531110 4_2:-56547671 Msa0609170:CDS
ATTGAGCTGTTCAGTCGTCT+TGG 0.533363 4_2:-56547275 Msa0609170:CDS
GGCTTCCCATACAGAGACTA+GGG 0.539629 4_2:+56548632 None:intergenic
ATCCCGGTCATTGACTAAGT+TGG 0.539690 4_2:-56547708 Msa0609170:CDS
CCAATAGTTTCTCGGCATCC+CGG 0.540751 4_2:-56547724 Msa0609170:CDS
TATTCTTTCTCGTCTCTCTA+CGG 0.542224 4_2:-56548044 Msa0609170:CDS
CTATGGAGGTAGAGTTAACA+AGG 0.542514 4_2:+56547366 None:intergenic
ACTTAAAGATAAAAGATTCA+CGG 0.544302 4_2:+56547418 None:intergenic
CAATTGCAAGCTTTAGGCAT+GGG 0.547449 4_2:-56546320 Msa0609170:CDS
AGCCGACTTCTCATTTGTGA+AGG 0.550930 4_2:+56547604 None:intergenic
GGAGATGAACATTTACTGTA+CGG 0.552497 4_2:-56546387 Msa0609170:CDS
TGTGCCTGTTTGATTTAGTG+TGG 0.555068 4_2:-56546190 Msa0609170:three_prime_UTR
CTATGGAAACAGATACCATC+AGG 0.559011 4_2:+56547656 None:intergenic
AGAGAAGATTTGAAACAGCA+AGG 0.559103 4_2:+56546497 None:intergenic
TTCTGCCCTAGTCTCTGTAT+GGG 0.559414 4_2:-56548637 Msa0609170:five_prime_UTR
AGTCTCGCTCTTCGCCTCAC+CGG 0.562200 4_2:-56548592 Msa0609170:five_prime_UTR
CTTCTATATTAGCAACAAAG+TGG 0.565241 4_2:-56548006 Msa0609170:CDS
AGATGAAGCCGAAATCAGAT+TGG 0.567186 4_2:-56546444 Msa0609170:CDS
GCAGTTCAAACTCTGCGCCT+GGG 0.567721 4_2:+56548559 None:intergenic
AATTCTCGAAAATCAAAGAC+GGG 0.570247 4_2:+56547962 None:intergenic
TATCCTTGGATGGTGAAGAC+TGG 0.573895 4_2:-56546535 Msa0609170:CDS
TGTCCAGTCTTCACCATCCA+AGG 0.574526 4_2:+56546532 None:intergenic
CCAATTGCAAGCTTTAGGCA+TGG 0.576197 4_2:-56546321 Msa0609170:CDS
AGATTGCCTCGTAGATCTAG+TGG 0.576199 4_2:-56547912 Msa0609170:CDS
AGGCTTCCCATACAGAGACT+AGG 0.578165 4_2:+56548631 None:intergenic
TACCTTCACAAATGAGAAGT+CGG 0.580484 4_2:-56547606 Msa0609170:CDS
GAGTTTATGTAAATTTGATG+AGG 0.581101 4_2:+56548132 None:intergenic
TCATTAACTTGCGTCACTCG+TGG 0.584904 4_2:-56546289 Msa0609170:CDS
GAGATGAACATTTACTGTAC+GGG 0.586511 4_2:-56546386 Msa0609170:CDS
TCACCGGTACGAACACTCCC+AGG 0.595293 4_2:-56548576 Msa0609170:five_prime_UTR
CAGTAACTATTGTTAATGCA+GGG 0.596957 4_2:-56547838 Msa0609170:CDS
ATAAAATGAAGAATTCCCTC+GGG 0.598954 4_2:+56548064 None:intergenic
AGAATTTCTTCACATTTATG+GGG 0.604749 4_2:-56546666 Msa0609170:intron
TGCCTGTTTGATTTAGTGTG+GGG 0.604837 4_2:-56546188 Msa0609170:three_prime_UTR
CGAAGAAGCTGGCTGATGTG+AGG 0.621819 4_2:-56546346 Msa0609170:CDS
ATGATTAGCGATTTACCCGA+GGG 0.622620 4_2:-56548079 Msa0609170:CDS
GCGCCTGGGAGTGTTCGTAC+CGG 0.623233 4_2:+56548573 None:intergenic
ATGTCTGCTAATACTTCACA+AGG 0.623262 4_2:+56546710 None:intergenic
TAATTCTCGAAAATCAAAGA+CGG 0.624079 4_2:+56547961 None:intergenic
GGAACTACAATCAAAATCTG+AGG 0.624111 4_2:+56546223 None:intergenic
AAACAGGCACAGTCATCCGA+TGG 0.626804 4_2:+56546202 None:intergenic
AATATTTGCATCAACTATGG+AGG 0.633314 4_2:+56547352 None:intergenic
ATCCAACTTAGTCAATGACC+GGG 0.636154 4_2:+56547706 None:intergenic
CACATAAGAAAACGAAACGC+AGG 0.636554 4_2:-56548661 None:intergenic
CAACAAAGTGGAGATACTTG+TGG 0.640766 4_2:-56547994 Msa0609170:CDS
TATGATTAGCGATTTACCCG+AGG 0.648778 4_2:-56548080 Msa0609170:CDS
TGGGAGTGTTCGTACCGGTG+AGG 0.669896 4_2:+56548578 None:intergenic
AAACTCCAAAGACATAATGT+GGG 0.676914 4_2:-56548115 Msa0609170:CDS
AGGACAACTCTTGTAAGACA+GGG 0.690229 4_2:+56547561 None:intergenic
GGGAAAATAACGATTCCACA+AGG 0.691654 4_2:+56546114 None:intergenic
GTTGGTCCACTAGATCTACG+AGG 0.818443 4_2:+56547906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAGTTAAATTAAATGA+GGG + chr4_2:56547519-56547538 None:intergenic 10.0%
!! ATAAAAAGTTAAATTAAATG+AGG + chr4_2:56547520-56547539 None:intergenic 10.0%
!! AAAAAGTTAAATTAAATGAG+GGG + chr4_2:56547518-56547537 None:intergenic 15.0%
!! ATGTAATTGATCAAATTTAA+TGG + chr4_2:56547618-56547637 None:intergenic 15.0%
!!! AATTTTTCAATCGTTTGTTT+GGG - chr4_2:56546169-56546188 Msa0609170:three_prime_UTR 20.0%
!! TTGAATACATAATAACAATG+TGG + chr4_2:56546231-56546250 None:intergenic 20.0%
!! GTTTAATTAACAACATTTAG+TGG - chr4_2:56546312-56546331 Msa0609170:CDS 20.0%
!! ACTTAAAGATAAAAGATTCA+CGG + chr4_2:56547190-56547209 None:intergenic 20.0%
!! TTGCTTATATTTCATTACAA+AGG + chr4_2:56547450-56547469 None:intergenic 20.0%
!!! ACAGACTTGATTTTTTTTAT+TGG - chr4_2:56547585-56547604 Msa0609170:CDS 20.0%
!! GATCAATTACATTTCTTAAT+AGG - chr4_2:56547626-56547645 Msa0609170:CDS 20.0%
!! AAGAATATGCAAATAATACA+AGG + chr4_2:56547750-56547769 None:intergenic 20.0%
!! TAGAATTTCTTCACATTTAT+GGG - chr4_2:56547938-56547957 Msa0609170:CDS 20.0%
!!! TTATGTATTGATTCTTGTTT+AGG - chr4_2:56548038-56548057 Msa0609170:CDS 20.0%
!!! TATGTATTGATTCTTGTTTA+GGG - chr4_2:56548039-56548058 Msa0609170:CDS 20.0%
!! TTATATTCTTACAAATGCAT+GGG + chr4_2:56548514-56548533 None:intergenic 20.0%
!! TTTATATTCTTACAAATGCA+TGG + chr4_2:56548515-56548534 None:intergenic 20.0%
!!! TGTTTTATTTGATTGATAAC+TGG - chr4_2:56548547-56548566 Msa0609170:intron 20.0%
!! TCAAGAATAGGTTTATATTA+TGG - chr4_2:56548601-56548620 Msa0609170:five_prime_UTR 20.0%
!! CAAGAATAGGTTTATATTAT+GGG - chr4_2:56548602-56548621 Msa0609170:five_prime_UTR 20.0%
! TGGAAATGATTTGAATACAA+CGG + chr4_2:56546150-56546169 None:intergenic 25.0%
! CAAACAAACGATTGAAAAAT+TGG + chr4_2:56546170-56546189 None:intergenic 25.0%
!!! CAATTTTTCAATCGTTTGTT+TGG - chr4_2:56546168-56546187 Msa0609170:three_prime_UTR 25.0%
! ATTAAACAACAAACAGACTT+AGG + chr4_2:56546299-56546318 None:intergenic 25.0%
!!! CATTGATTCATATGAGAATA+AGG + chr4_2:56546358-56546377 None:intergenic 25.0%
!!! CAATGATTTTTTACCATTCT+TGG - chr4_2:56546373-56546392 Msa0609170:CDS 25.0%
! GAGTTTATGTAAATTTGATG+AGG + chr4_2:56546476-56546495 None:intergenic 25.0%
! AATAAAATGAAGAATTCCCT+CGG + chr4_2:56546545-56546564 None:intergenic 25.0%
! TAATTCTCGAAAATCAAAGA+CGG + chr4_2:56546647-56546666 None:intergenic 25.0%
!!! CAATGAAGAGCTTTTTTATA+CGG + chr4_2:56546741-56546760 None:intergenic 25.0%
!! ACTAAGTTGGATATTGTATT+TGG - chr4_2:56546910-56546929 Msa0609170:intron 25.0%
! AAGATAATATCTTCAAGCTA+TGG + chr4_2:56546969-56546988 None:intergenic 25.0%
! CAAGGAAACAATTTATAGTT+GGG + chr4_2:56547224-56547243 None:intergenic 25.0%
! ACAAGGAAACAATTTATAGT+TGG + chr4_2:56547225-56547244 None:intergenic 25.0%
! ATCAATATTTGCATCAACTA+TGG + chr4_2:56547259-56547278 None:intergenic 25.0%
! TTGATGCAAATATTGATCTT+GGG - chr4_2:56547262-56547281 Msa0609170:CDS 25.0%
! ATTGTTAAATAAGATCGAAG+TGG + chr4_2:56547480-56547499 None:intergenic 25.0%
! ATGACCCAATTTATTAATCA+TGG - chr4_2:56547547-56547566 Msa0609170:CDS 25.0%
! AAACAAAAACAAGTCAAGAT+CGG + chr4_2:56547784-56547803 None:intergenic 25.0%
!!! ATGTGAAGAAATTCTAGTTT+AGG + chr4_2:56547934-56547953 None:intergenic 25.0%
! CTAGAATTTCTTCACATTTA+TGG - chr4_2:56547937-56547956 Msa0609170:CDS 25.0%
! AGAATTTCTTCACATTTATG+GGG - chr4_2:56547939-56547958 Msa0609170:CDS 25.0%
! AAATTATTGTTAGCCGTTAA+AGG + chr4_2:56548001-56548020 None:intergenic 25.0%
ATACAACGGAATGATTTGAA+CGG + chr4_2:56546136-56546155 None:intergenic 30.0%
AATAACAATGTGGATGAGAT+TGG + chr4_2:56546221-56546240 None:intergenic 30.0%
!!! TGATTTTTTACCATTCTTGG+TGG - chr4_2:56546376-56546395 Msa0609170:CDS 30.0%
!!! TTTCGTTTCATGTTTTAACC+AGG - chr4_2:56546426-56546445 Msa0609170:CDS 30.0%
TAAACTCCAAAGACATAATG+TGG - chr4_2:56546489-56546508 Msa0609170:CDS 30.0%
AAACTCCAAAGACATAATGT+GGG - chr4_2:56546490-56546509 Msa0609170:CDS 30.0%
ATAAAATGAAGAATTCCCTC+GGG + chr4_2:56546544-56546563 None:intergenic 30.0%
CTTCTATATTAGCAACAAAG+TGG - chr4_2:56546599-56546618 Msa0609170:intron 30.0%
AAAATCAAAGACGGGTAATT+GGG + chr4_2:56546638-56546657 None:intergenic 30.0%
AATTCTCGAAAATCAAAGAC+GGG + chr4_2:56546646-56546665 None:intergenic 30.0%
CAGTAACTATTGTTAATGCA+GGG - chr4_2:56546767-56546786 Msa0609170:CDS 30.0%
ACCTAGAATCTAGAAATAGT+AGG - chr4_2:56546848-56546867 Msa0609170:intron 30.0%
!! ACCTACTATTTCTAGATTCT+AGG + chr4_2:56546852-56546871 None:intergenic 30.0%
AATTCCAACATTGAAGAAGT+TGG - chr4_2:56547107-56547126 Msa0609170:intron 30.0%
AATATTTGCATCAACTATGG+AGG + chr4_2:56547256-56547275 None:intergenic 30.0%
GTTGATGCAAATATTGATCT+TGG - chr4_2:56547261-56547280 Msa0609170:CDS 30.0%
! CAACATGCAGTTCATTATTT+TGG + chr4_2:56547299-56547318 None:intergenic 30.0%
ACCCAATTTATTAATCATGG+AGG - chr4_2:56547550-56547569 Msa0609170:CDS 30.0%
CCCTCCATGATTAATAAATT+GGG + chr4_2:56547554-56547573 None:intergenic 30.0%
CCCAATTTATTAATCATGGA+GGG - chr4_2:56547551-56547570 Msa0609170:CDS 30.0%
ACCCTCCATGATTAATAAAT+TGG + chr4_2:56547555-56547574 None:intergenic 30.0%
TCACACTTCGTAATACTTAA+GGG + chr4_2:56547670-56547689 None:intergenic 30.0%
ATCACACTTCGTAATACTTA+AGG + chr4_2:56547671-56547690 None:intergenic 30.0%
TGTCTATTGTGAATGTTGAT+TGG - chr4_2:56547718-56547737 Msa0609170:CDS 30.0%
!! ATTCTAGTTTAGGACTCTTT+CGG + chr4_2:56547924-56547943 None:intergenic 30.0%
AAACTTCACCAATCTGATTT+CGG + chr4_2:56548172-56548191 None:intergenic 30.0%
TAGAAAATGTCACGTTCTTA+AGG - chr4_2:56548196-56548215 Msa0609170:intron 30.0%
AGAAAATGTCACGTTCTTAA+GGG - chr4_2:56548197-56548216 Msa0609170:intron 30.0%
ATCAAAAAAATCGAAGAAGC+TGG - chr4_2:56548248-56548267 Msa0609170:intron 30.0%
!!! GATTTTGATTGTAGTTCCAT+CGG - chr4_2:56548387-56548406 Msa0609170:intron 30.0%
! TTTTCACATAGATTACCTTG+TGG - chr4_2:56548476-56548495 Msa0609170:intron 30.0%
AAACCTATTCTTGACACAAA+TGG + chr4_2:56548595-56548614 None:intergenic 30.0%
TTTATTAACCTGTGCCTTAA+GGG + chr4_2:56548643-56548662 None:intergenic 30.0%
ATTTATTAACCTGTGCCTTA+AGG + chr4_2:56548644-56548663 None:intergenic 30.0%
TATCACCCACATTATGTCTT+TGG + chr4_2:56546498-56546517 None:intergenic 35.0%
TATTCTTTCTCGTCTCTCTA+CGG - chr4_2:56546561-56546580 Msa0609170:intron 35.0%
GAAAATCAAAGACGGGTAAT+TGG + chr4_2:56546639-56546658 None:intergenic 35.0%
!!! GAAGAGCTTTTTTATACGGT+TGG + chr4_2:56546737-56546756 None:intergenic 35.0%
CCTGCATTAACAATAGTTAC+TGG + chr4_2:56546769-56546788 None:intergenic 35.0%
CCAGTAACTATTGTTAATGC+AGG - chr4_2:56546766-56546785 Msa0609170:CDS 35.0%
CTAGGTTAAGTGTAAGATCA+TGG + chr4_2:56546834-56546853 None:intergenic 35.0%
TGTGTTACCCAATAGTTTCT+CGG - chr4_2:56546873-56546892 Msa0609170:intron 35.0%
TATCCAACTTAGTCAATGAC+CGG + chr4_2:56546903-56546922 None:intergenic 35.0%
TACCTTCACAAATGAGAAGT+CGG - chr4_2:56546999-56547018 Msa0609170:intron 35.0%
TGTCCTTCGAAAAATGTTAC+TGG - chr4_2:56547061-56547080 Msa0609170:intron 35.0%
GTCCTTCGAAAAATGTTACT+GGG - chr4_2:56547062-56547081 Msa0609170:intron 35.0%
ATGTCCAACTTCTTCAATGT+TGG + chr4_2:56547114-56547133 None:intergenic 35.0%
GCTATCAGATGAAACTATTC+AGG - chr4_2:56547371-56547390 Msa0609170:CDS 35.0%
CACACTTCGTAATACTTAAG+GGG + chr4_2:56547669-56547688 None:intergenic 35.0%
CATAGTTAAGACACTAGCAA+GGG + chr4_2:56547807-56547826 None:intergenic 35.0%
ATGTCTGCTAATACTTCACA+AGG + chr4_2:56547898-56547917 None:intergenic 35.0%
! ATCTTGCTCCAGATTTTCTT+CGG - chr4_2:56547972-56547991 Msa0609170:CDS 35.0%
TTATTGTTAGCCGTTAAAGG+TGG + chr4_2:56547998-56548017 None:intergenic 35.0%
TTAGGGATCTTACTTATCCT+TGG - chr4_2:56548056-56548075 Msa0609170:CDS 35.0%
! AGAGAAGATTTGAAACAGCA+AGG + chr4_2:56548111-56548130 None:intergenic 35.0%
GGAGATGAACATTTACTGTA+CGG - chr4_2:56548218-56548237 Msa0609170:intron 35.0%
GAGATGAACATTTACTGTAC+GGG - chr4_2:56548219-56548238 Msa0609170:intron 35.0%
GGAACTACAATCAAAATCTG+AGG + chr4_2:56548385-56548404 None:intergenic 35.0%
GAACCATTTGTGTCAAGAAT+AGG - chr4_2:56548589-56548608 Msa0609170:five_prime_UTR 35.0%
GACTCTCATTCATTCGTTAC+AGG + chr4_2:56545997-56546016 None:intergenic 40.0%
AAGTACGAAACCACCAAGAA+TGG + chr4_2:56546389-56546408 None:intergenic 40.0%
! TTTTAACCAGGCATAGCTCA+TGG - chr4_2:56546438-56546457 Msa0609170:CDS 40.0%
TATGATTAGCGATTTACCCG+AGG - chr4_2:56546525-56546544 Msa0609170:CDS 40.0%
ATGATTAGCGATTTACCCGA+GGG - chr4_2:56546526-56546545 Msa0609170:CDS 40.0%
CAACAAAGTGGAGATACTTG+TGG - chr4_2:56546611-56546630 Msa0609170:intron 40.0%
GGTGACTTAGAATTTCGCTT+TGG + chr4_2:56546673-56546692 None:intergenic 40.0%
GGTTGGATTTGTGAAGTAGT+TGG + chr4_2:56546720-56546739 None:intergenic 40.0%
ATCCAACTTAGTCAATGACC+GGG + chr4_2:56546902-56546921 None:intergenic 40.0%
TTCCTTGATTCTGTACCTGA+TGG - chr4_2:56546934-56546953 Msa0609170:intron 40.0%
TACCATCAGGTACAGAATCA+AGG + chr4_2:56546939-56546958 None:intergenic 40.0%
CTATGGAAACAGATACCATC+AGG + chr4_2:56546952-56546971 None:intergenic 40.0%
!!! TCGGCTCAAAGACTTTTTTC+TGG - chr4_2:56547018-56547037 Msa0609170:intron 40.0%
!!! CGGCTCAAAGACTTTTTTCT+GGG - chr4_2:56547019-56547038 Msa0609170:intron 40.0%
AGGACAACTCTTGTAAGACA+GGG + chr4_2:56547047-56547066 None:intergenic 40.0%
AAGGACAACTCTTGTAAGAC+AGG + chr4_2:56547048-56547067 None:intergenic 40.0%
!! CTCCCAGTAACATTTTTCGA+AGG + chr4_2:56547067-56547086 None:intergenic 40.0%
CTATGGAGGTAGAGTTAACA+AGG + chr4_2:56547242-56547261 None:intergenic 40.0%
GCATAGTTAAGACACTAGCA+AGG + chr4_2:56547808-56547827 None:intergenic 40.0%
CGCATCAAATTCTTGAACGA+AGG + chr4_2:56547853-56547872 None:intergenic 40.0%
! TTTTCTTCGGCCACCTTTAA+CGG - chr4_2:56547985-56548004 Msa0609170:CDS 40.0%
GGATCTTACTTATCCTTGGA+TGG - chr4_2:56548060-56548079 Msa0609170:CDS 40.0%
AGATGAAGCCGAAATCAGAT+TGG - chr4_2:56548161-56548180 Msa0609170:intron 40.0%
AGGAACCAATTGCAAGCTTT+AGG - chr4_2:56548279-56548298 Msa0609170:intron 40.0%
!! CAATTGCAAGCTTTAGGCAT+GGG - chr4_2:56548285-56548304 Msa0609170:intron 40.0%
!!! CACTCGTGGTTTTGATGTTT+TGG - chr4_2:56548330-56548349 Msa0609170:intron 40.0%
!!! TCGTGGTTTTGATGTTTTGG+CGG - chr4_2:56548333-56548352 Msa0609170:intron 40.0%
! TGTGCCTGTTTGATTTAGTG+TGG - chr4_2:56548415-56548434 Msa0609170:intron 40.0%
! GTGCCTGTTTGATTTAGTGT+GGG - chr4_2:56548416-56548435 Msa0609170:intron 40.0%
! TGCCTGTTTGATTTAGTGTG+GGG - chr4_2:56548417-56548436 Msa0609170:intron 40.0%
!! TTAGTGTGGGGCATTTTCAA+TGG - chr4_2:56548429-56548448 Msa0609170:intron 40.0%
GGGAAAATAACGATTCCACA+AGG + chr4_2:56548494-56548513 None:intergenic 40.0%
! GATAACTGGTTAAGTGTTGC+TGG - chr4_2:56548561-56548580 Msa0609170:five_prime_UTR 40.0%
! TGGTTAAGTGTTGCTGGAAA+TGG - chr4_2:56548567-56548586 Msa0609170:five_prime_UTR 40.0%
! AATGCTAACTTGTGCCCTTA+AGG - chr4_2:56548626-56548645 Msa0609170:five_prime_UTR 40.0%
TTTCTGCCCTAGTCTCTGTA+TGG - chr4_2:56545967-56545986 Msa0609170:three_prime_UTR 45.0%
TTCTGCCCTAGTCTCTGTAT+GGG - chr4_2:56545968-56545987 Msa0609170:three_prime_UTR 45.0%
ACTAGATCTACGAGGCAATC+TGG + chr4_2:56546694-56546713 None:intergenic 45.0%
AGATTGCCTCGTAGATCTAG+TGG - chr4_2:56546693-56546712 Msa0609170:CDS 45.0%
! ATCCCGGTCATTGACTAAGT+TGG - chr4_2:56546897-56546916 Msa0609170:intron 45.0%
! AGCCGACTTCTCATTTGTGA+AGG + chr4_2:56547004-56547023 None:intergenic 45.0%
ATTGAGCTGTTCAGTCGTCT+TGG - chr4_2:56547330-56547349 Msa0609170:CDS 45.0%
AAAGGTGGCCGAAGAAAATC+TGG + chr4_2:56547983-56548002 None:intergenic 45.0%
TATCCTTGGATGGTGAAGAC+TGG - chr4_2:56548070-56548089 Msa0609170:CDS 45.0%
CCATGCCTAAAGCTTGCAAT+TGG + chr4_2:56548287-56548306 None:intergenic 45.0%
!! CCAATTGCAAGCTTTAGGCA+TGG - chr4_2:56548284-56548303 Msa0609170:intron 45.0%
!! TCATTAACTTGCGTCACTCG+TGG - chr4_2:56548316-56548335 Msa0609170:intron 45.0%
!!! CGTGGTTTTGATGTTTTGGC+GGG - chr4_2:56548334-56548353 Msa0609170:intron 45.0%
TGCCCCACACTAAATCAAAC+AGG + chr4_2:56548422-56548441 None:intergenic 45.0%
GGCTTCCCATACAGAGACTA+GGG + chr4_2:56545976-56545995 None:intergenic 50.0%
AGGCTTCCCATACAGAGACT+AGG + chr4_2:56545977-56545996 None:intergenic 50.0%
TAGAAGCCATGAGCTATGCC+TGG + chr4_2:56546447-56546466 None:intergenic 50.0%
TTCTCGTCTCTCTACGGAAG+AGG - chr4_2:56546567-56546586 Msa0609170:intron 50.0%
GTTGGTCCACTAGATCTACG+AGG + chr4_2:56546702-56546721 None:intergenic 50.0%
CGGGATGCCGAGAAACTATT+GGG + chr4_2:56546883-56546902 None:intergenic 50.0%
CCAATAGTTTCTCGGCATCC+CGG - chr4_2:56546881-56546900 Msa0609170:intron 50.0%
!! TTGGTAGTGTCGAGTCTCTC+AGG - chr4_2:56547349-56547368 Msa0609170:CDS 50.0%
TGTCCAGTCTTCACCATCCA+AGG + chr4_2:56548076-56548095 None:intergenic 50.0%
AAACAGGCACAGTCATCCGA+TGG + chr4_2:56548406-56548425 None:intergenic 50.0%
AACTTGTGCCCTTAAGGCAC+AGG - chr4_2:56548632-56548651 Msa0609170:five_prime_UTR 50.0%
GCAGTTCAAACTCTGCGCCT+GGG + chr4_2:56546049-56546068 None:intergenic 55.0%
TGCAGTTCAAACTCTGCGCC+TGG + chr4_2:56546050-56546069 None:intergenic 55.0%
CCGGGATGCCGAGAAACTAT+TGG + chr4_2:56546884-56546903 None:intergenic 55.0%
CGAAGAAGCTGGCTGATGTG+AGG - chr4_2:56548259-56548278 Msa0609170:intron 55.0%
AGTCTCGCTCTTCGCCTCAC+CGG - chr4_2:56546013-56546032 Msa0609170:three_prime_UTR 60.0%
!! TGGGAGTGTTCGTACCGGTG+AGG + chr4_2:56546030-56546049 None:intergenic 60.0%
TCACCGGTACGAACACTCCC+AGG - chr4_2:56546029-56546048 Msa0609170:three_prime_UTR 60.0%
!! GCGCCTGGGAGTGTTCGTAC+CGG + chr4_2:56546035-56546054 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56545949 56548678 56545949 ID=Msa0609170;Name=Msa0609170
chr4_2 mRNA 56545949 56548678 56545949 ID=Msa0609170-mRNA-1;Parent=Msa0609170;Name=Msa0609170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=137|1|1|1|0.66|0.5|4|334|455
chr4_2 exon 56545949 56546567 56545949 ID=Msa0609170-mRNA-1:exon:14535;Parent=Msa0609170-mRNA-1
chr4_2 exon 56546667 56546813 56546667 ID=Msa0609170-mRNA-1:exon:14534;Parent=Msa0609170-mRNA-1
chr4_2 exon 56547235 56548179 56547235 ID=Msa0609170-mRNA-1:exon:14533;Parent=Msa0609170-mRNA-1
chr4_2 exon 56548551 56548678 56548551 ID=Msa0609170-mRNA-1:exon:14532;Parent=Msa0609170-mRNA-1
chr4_2 five_prime_UTR 56548551 56548678 56548551 ID=Msa0609170-mRNA-1:five_prime_utr;Parent=Msa0609170-mRNA-1
chr4_2 five_prime_UTR 56548171 56548179 56548171 ID=Msa0609170-mRNA-1:five_prime_utr;Parent=Msa0609170-mRNA-1
chr4_2 CDS 56547235 56548170 56547235 ID=Msa0609170-mRNA-1:cds;Parent=Msa0609170-mRNA-1
chr4_2 CDS 56546667 56546813 56546667 ID=Msa0609170-mRNA-1:cds;Parent=Msa0609170-mRNA-1
chr4_2 CDS 56546283 56546567 56546283 ID=Msa0609170-mRNA-1:cds;Parent=Msa0609170-mRNA-1
chr4_2 three_prime_UTR 56545949 56546282 56545949 ID=Msa0609170-mRNA-1:three_prime_utr;Parent=Msa0609170-mRNA-1
Gene Sequence

>Msa0609170

ATGGCTTCTACAATCTCCTCATCAAATTTACATAAACTCCAAAGACATAATGTGGGTGATATGAAAGATATGATTAGCGATTTACCCGAGGGAATTCTTCATTTTATTCTTTCTCGTCTCTCTACGGAAGAGGCTGTAAGAACTTCTATATTAGCAACAAAGTGGAGATACTTGTGGACCCAATTACCCGTCTTTGATTTTCGAGAATTATCTCCAAAGCGAAATTCTAAGTCACCAGATTGCCTCGTAGATCTAGTGGACCAACTACTTCACAAATCCAACCGTATAAAAAAGCTCTTCATTGAATTACCAGTAACTATTGTTAATGCAGGGAAAGTTAGTTCTATGTTAACTTCTGCATTGATGCATGATGTCCATGATCTTACACTTAACCTAGAATCTAGAAATAGTAGGTTTGTGTTACCCAATAGTTTCTCGGCATCCCGGTCATTGACTAAGTTGGATATTGTATTTGGCTTCCTTGATTCTGTACCTGATGGTATCTGTTTCCATAGCTTGAAGATATTATCTTTTGCACATCTTACCTTCACAAATGAGAAGTCGGCTCAAAGACTTTTTTCTGGGTGCCCTGTCTTACAAGAGTTGTCCTTCGAAAAATGTTACTGGGAGAACATAAACATTAGTGTTGCAATTCCAACATTGAAGAAGTTGGACATCTTTTTCAGATCTTCTAGTCTAGATCGTAACAGTTGTATGTTCGAAATTGATGCCGTGAATCTTTTATCTTTAAGTTACAAAAGTAACCCAACTATAAATTGTTTCCTTGTTAACTCTACCTCCATAGTTGATGCAAATATTGATCTTGGGTTTTTCTGTGTCCAAAATAATGAACTGCATGTTGCTGTATTTGCAATTGAGCTGTTCAGTCGTCTTGGTAGTGTCGAGTCTCTCAGGCTATCAGATGAAACTATTCAGTGTCTTAACTATGCAAAATCTGCTCTTCATCTTTTACCTTCGTTCAAGAATTTGATGCGTCTTGAAGTGCATTTCGATGATCCTTGTGAAGTATTAGCAGACATTCTCCGAAAGAGTCCTAAACTAGAATTTCTTCACATTTATGGGGGATCTTACTTATCCTTGGATGGTGAAGACTGGACATCAGATTCATTGCCTTGCTGTTTCAAATCTTCTCTCAAATCATGTGATATTTCAGATTTTCGTGCAGATGAAGCCGAAATCAGATTGGTGAAGTTTTTGTTAGAAAATGTCACGTTCTTAAGGGAGATGAACATTTACTGTACGGGATATCTATCAAAAAAATCGAAGAAGCTGGCTGATGTGAGGAACCAATTGCAAGCTTTAGGCATGGGAAGTTGTGTCATTAACTTGCGTCACTCGTGGTTTTGA
Protein sequence

>Msa0609170

MASTISSSNLHKLQRHNVGDMKDMISDLPEGILHFILSRLSTEEAVRTSILATKWRYLWTQLPVFDFRELSPKRNSKSPDCLVDLVDQLLHKSNRIKKLFIELPVTIVNAGKVSSMLTSALMHDVHDLTLNLESRNSRFVLPNSFSASRSLTKLDIVFGFLDSVPDGICFHSLKILSFAHLTFTNEKSAQRLFSGCPVLQELSFEKCYWENINISVAIPTLKKLDIFFRSSSLDRNSCMFEIDAVNLLSLSYKSNPTINCFLVNSTSIVDANIDLGFFCVQNNELHVAVFAIELFSRLGSVESLRLSDETIQCLNYAKSALHLLPSFKNLMRLEVHFDDPCEVLADILRKSPKLEFLHIYGGSYLSLDGEDWTSDSLPCCFKSSLKSCDISDFRADEAEIRLVKFLLENVTFLREMNIYCTGYLSKKSKKLADVRNQLQALGMGSCVINLRHSWF*