AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381610 MtrunA17_Chr4g0041581 94.956 456 22 1 1 455 1 456 0.0 875
Msa1381610 MtrunA17_Chr7g0231671 54.803 458 195 6 5 451 1 457 1.65e-152 442
Msa1381610 MtrunA17_Chr5g0416781 56.114 458 189 6 5 451 1 457 1.88e-152 442
Msa1381610 MtrunA17_Chr3g0096461 46.809 470 234 6 1 455 1 469 2.32e-121 362
Msa1381610 MtrunA17_Chr4g0041631 45.798 476 229 8 1 455 1 468 1.80e-120 360
Msa1381610 MtrunA17_Chr4g0041601 44.350 469 235 8 1 448 1 464 2.59e-110 334
Msa1381610 MtrunA17_Chr7g0222771 50.311 322 148 6 1 312 1 320 1.44e-88 273
Msa1381610 MtrunA17_Chr7g0222761 47.297 370 183 8 1 360 1 368 4.46e-87 271
Msa1381610 MtrunA17_Chr2g0326831 42.217 469 224 16 21 448 67 529 1.44e-83 266
Msa1381610 MtrunA17_Chr7g0231691 42.931 389 210 5 74 451 47 434 1.13e-81 259
Msa1381610 MtrunA17_Chr4g0073451 56.604 159 66 1 292 447 1 159 1.60e-52 174
Msa1381610 MtrunA17_Chr4g0041661 48.585 212 105 2 240 448 3 213 1.08e-51 173
Msa1381610 MtrunA17_Chr4g0041681 37.500 312 174 9 13 316 7 305 4.94e-41 149
Msa1381610 MtrunA17_Chr5g0394131 27.766 461 270 12 9 418 3 451 1.54e-32 129
Msa1381610 MtrunA17_Chr5g0416751 69.118 68 21 0 1 68 1 68 1.16e-27 105
Msa1381610 MtrunA17_Chr5g0416761 41.333 150 84 1 306 451 1 150 1.02e-25 102
Msa1381610 MtrunA17_Chr2g0313941 25.917 436 308 11 15 441 5 434 1.08e-25 108
Msa1381610 MtrunA17_Chr4g0023311 24.291 494 291 18 23 445 32 513 9.84e-23 100
Msa1381610 MtrunA17_Chr5g0435741 27.765 425 276 15 6 419 17 421 1.53e-22 99.8
Msa1381610 MtrunA17_Chr4g0041671 59.722 72 29 0 5 76 1 72 2.78e-22 90.9
Msa1381610 MtrunA17_Chr1g0191321 40.278 144 83 1 73 213 23 166 8.65e-21 89.7
Msa1381610 MtrunA17_Chr8g0362021 27.816 435 262 18 14 418 11 423 4.95e-20 92.4
Msa1381610 MtrunA17_Chr5g0438191 26.355 406 267 11 23 419 13 395 8.57e-20 91.3
Msa1381610 MtrunA17_Chr7g0259181 26.009 446 263 17 12 420 19 434 2.70e-17 84.0
Msa1381610 MtrunA17_Chr2g0319411 26.211 351 234 12 22 355 21 363 4.83e-17 82.4
Msa1381610 MtrunA17_Chr4g0073461 55.738 61 24 1 1 61 1 58 1.40e-15 71.2
Msa1381610 MtrunA17_Chr7g0224001 25.000 448 219 17 23 434 14 380 1.67e-15 78.2
Msa1381610 MtrunA17_Chr0c03g0490011 26.303 422 252 18 23 423 8 391 5.50e-15 76.6
Msa1381610 MtrunA17_Chr7g0255101 24.242 429 237 15 17 429 104 460 1.24e-14 75.9
Msa1381610 MtrunA17_Chr6g0457681 24.444 360 215 11 12 338 44 379 4.15e-14 73.9
Msa1381610 MtrunA17_Chr1g0197661 25.858 379 241 11 15 359 11 383 6.62e-14 73.2
Msa1381610 MtrunA17_Chr8g0366411 28.354 328 218 9 16 335 73 391 6.67e-14 73.6
Msa1381610 MtrunA17_Chr7g0246351 24.122 427 231 17 22 419 5 367 9.64e-14 72.8
Msa1381610 MtrunA17_Chr5g0415991 29.864 221 143 8 14 226 6 222 1.00e-13 72.8
Msa1381610 MtrunA17_Chr7g0262091 23.624 436 236 16 7 421 2 361 1.19e-13 72.4
Msa1381610 MtrunA17_Chr3g0138571 24.471 425 233 16 22 429 12 365 1.26e-13 72.4
Msa1381610 MtrunA17_Chr5g0438051 22.826 460 249 15 22 445 5 394 1.35e-13 72.4
Msa1381610 MtrunA17_Chr7g0236211 25.116 430 231 16 20 429 9 367 2.30e-13 71.6
Msa1381610 MtrunA17_Chr2g0314171 24.017 458 304 16 11 444 31 468 2.75e-13 71.6
Msa1381610 MtrunA17_Chr3g0137681 31.373 204 103 7 20 202 7 194 3.87e-13 70.9
Msa1381610 MtrunA17_Chr2g0325431 24.594 431 257 16 23 423 19 411 4.02e-13 70.9
Msa1381610 MtrunA17_Chr3g0085941 26.703 367 226 13 12 352 2 351 1.00e-12 69.3
Msa1381610 MtrunA17_Chr5g0421501 30.542 203 124 8 14 205 6 202 1.32e-12 69.3
Msa1381610 MtrunA17_Chr1g0148651 28.169 213 128 6 18 226 2 193 2.12e-12 69.3
Msa1381610 MtrunA17_Chr3g0138371 23.239 426 242 16 17 429 14 367 2.34e-12 68.6
Msa1381610 MtrunA17_Chr2g0326701 36.872 179 83 9 195 362 17 176 2.54e-12 65.5
Msa1381610 MtrunA17_Chr8g0360071 26.471 442 268 18 14 419 4 424 2.93e-12 68.6
Msa1381610 MtrunA17_Chr1g0148661 28.319 226 150 7 23 239 18 240 4.60e-12 66.6
Msa1381610 MtrunA17_Chr1g0154471 29.018 224 120 8 23 226 17 221 5.23e-12 67.4
Msa1381610 MtrunA17_Chr1g0164901 28.022 364 215 15 23 359 9 352 5.80e-12 67.0
Msa1381610 MtrunA17_Chr6g0486911 27.356 329 215 12 22 338 21 337 9.32e-12 66.6
Msa1381610 MtrunA17_Chr2g0303191 24.279 416 264 14 23 416 7 393 2.29e-11 65.5
Msa1381610 MtrunA17_Chr2g0319401 27.083 240 145 9 9 231 15 241 2.51e-11 65.1
Msa1381610 MtrunA17_Chr8g0362521 25.234 428 271 19 21 418 13 421 2.77e-11 65.5
Msa1381610 MtrunA17_Chr1g0149921 27.876 226 145 9 23 234 43 264 2.80e-11 65.5
Msa1381610 MtrunA17_Chr1g0154461 29.515 227 135 9 23 232 28 246 5.43e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381610 AT4G14096.2 27.887 459 285 16 22 450 7 449 1.26e-30 124
Msa1381610 AT4G14096.1 27.887 459 285 16 22 450 7 449 1.26e-30 124
Msa1381610 AT3G58880.1 28.736 435 257 17 21 419 1 418 1.63e-28 117
Msa1381610 AT3G59210.2 29.590 463 264 17 22 441 6 449 4.77e-28 116
Msa1381610 AT3G59210.1 29.590 463 264 17 22 441 6 449 4.77e-28 116
Msa1381610 AT3G59210.5 29.590 463 264 17 22 441 6 449 4.77e-28 116
Msa1381610 AT3G59210.4 29.590 463 264 17 22 441 6 449 4.77e-28 116
Msa1381610 AT3G59210.3 29.590 463 264 17 22 441 6 449 4.77e-28 116
Msa1381610 AT3G58860.1 28.160 451 290 15 23 451 7 445 2.11e-27 114
Msa1381610 AT5G53840.1 27.907 430 288 13 19 441 14 428 4.28e-26 110
Msa1381610 AT1G78840.1 29.216 421 253 16 22 418 4 403 9.81e-26 109
Msa1381610 AT1G78840.2 29.216 421 253 16 22 418 4 403 9.81e-26 109
Msa1381610 AT4G14103.3 28.291 357 232 11 22 361 7 356 1.25e-25 108
Msa1381610 AT4G14103.1 28.291 357 232 11 22 361 7 356 1.25e-25 108
Msa1381610 AT4G14103.2 26.444 450 278 16 22 450 7 424 1.71e-25 108
Msa1381610 AT4G13965.1 26.835 436 280 15 23 446 10 418 2.72e-25 107
Msa1381610 AT3G03030.1 26.897 435 280 13 23 423 2 432 6.20e-25 107
Msa1381610 AT3G58900.4 28.472 432 265 14 23 419 2 424 6.72e-25 107
Msa1381610 AT3G59230.1 26.763 482 287 21 14 446 4 468 1.63e-23 103
Msa1381610 AT1G55030.2 25.301 415 263 15 16 414 12 395 3.19e-23 102
Msa1381610 AT1G51370.1 27.918 437 255 18 17 429 13 413 3.67e-23 101
Msa1381610 AT1G55030.1 25.180 417 261 15 16 414 2 385 3.83e-23 101
Msa1381610 AT5G44950.1 26.014 419 272 12 22 418 3 405 6.13e-23 101
Msa1381610 AT1G32375.2 26.859 417 256 15 23 418 2 390 7.35e-23 100
Msa1381610 AT1G32375.1 26.859 417 256 15 23 418 2 390 7.35e-23 100
Msa1381610 AT2G42730.1 26.588 425 278 13 20 418 2 418 8.81e-23 100
Msa1381610 AT1G66290.1 25.891 421 287 13 19 428 25 431 1.42e-22 100
Msa1381610 AT3G59200.1 25.840 476 263 19 22 434 6 454 1.66e-22 100
Msa1381610 AT3G03040.1 26.147 436 269 16 23 419 2 423 2.00e-22 100
Msa1381610 AT5G25860.1 27.059 425 263 14 22 418 11 416 4.19e-22 99.0
Msa1381610 AT4G22280.1 30.966 352 209 12 23 361 2 332 5.36e-22 98.2
Msa1381610 AT4G22280.2 30.857 350 208 12 23 359 2 330 9.91e-22 96.3
Msa1381610 AT5G56420.1 24.828 435 295 13 22 446 5 417 1.05e-21 97.4
Msa1381610 AT5G56420.2 24.828 435 295 13 22 446 5 417 1.05e-21 97.4
Msa1381610 AT5G56420.3 24.828 435 295 13 22 446 5 417 1.05e-21 97.4
Msa1381610 AT3G50710.1 25.843 445 281 16 23 445 2 419 1.12e-21 97.4
Msa1381610 AT3G59240.1 26.351 444 286 15 22 433 7 441 2.92e-21 96.7
Msa1381610 AT1G13780.1 25.322 466 291 17 23 451 10 455 3.88e-21 95.9
Msa1381610 AT1G66300.1 25.175 429 292 14 19 433 25 438 3.95e-21 95.9
Msa1381610 AT3G26922.1 27.652 264 180 6 15 273 6 263 4.80e-21 93.6
Msa1381610 AT3G26922.2 27.652 264 180 6 15 273 6 263 4.80e-21 93.6
Msa1381610 AT3G28410.1 26.140 329 206 13 12 328 19 322 1.53e-20 94.4
Msa1381610 AT1G58310.1 27.865 384 231 12 17 361 2 378 4.80e-20 93.2
Msa1381610 AT3G59250.1 27.952 415 249 14 22 419 6 387 4.92e-20 92.4
Msa1381610 AT3G59170.1 29.337 392 218 14 22 361 6 390 5.27e-20 92.8
Msa1381610 AT3G49030.1 24.943 441 287 18 22 445 20 433 7.73e-20 92.0
Msa1381610 AT1G16930.2 24.703 421 280 13 23 418 15 423 9.12e-20 92.0
Msa1381610 AT1G16930.1 24.703 421 280 13 23 418 15 423 9.12e-20 92.0
Msa1381610 AT1G16930.3 24.703 421 280 13 23 418 15 423 9.12e-20 92.0
Msa1381610 AT5G56440.1 26.392 413 270 10 23 418 2 397 2.03e-19 90.5
Msa1381610 AT2G29930.3 27.460 437 266 21 14 418 4 421 3.54e-19 90.1
Msa1381610 AT2G29930.1 27.460 437 266 21 14 418 4 421 3.54e-19 90.1
Msa1381610 AT5G53635.1 28.095 420 260 15 24 418 1 403 3.84e-19 89.7
Msa1381610 AT4G10400.2 25.799 438 282 14 23 449 2 407 4.03e-19 89.7
Msa1381610 AT4G10400.3 25.799 438 282 14 23 449 2 407 4.03e-19 89.7
Msa1381610 AT4G10400.1 25.799 438 282 14 23 449 2 407 4.03e-19 89.7
Msa1381610 AT1G51370.2 31.111 225 119 7 17 226 13 216 4.20e-19 88.6
Msa1381610 AT4G00315.1 31.667 240 144 8 23 252 2 231 4.26e-19 89.7
Msa1381610 AT5G38590.2 24.658 438 287 13 23 446 2 410 4.37e-19 89.4
Msa1381610 AT5G41840.1 28.682 387 224 15 18 361 9 386 6.74e-19 89.7
Msa1381610 AT1G51370.3 31.111 225 119 7 17 226 13 216 7.98e-19 88.6
Msa1381610 AT5G22720.1 27.021 433 254 16 22 416 22 430 8.89e-19 89.0
Msa1381610 AT3G44060.1 24.194 434 307 11 28 451 4 425 1.19e-18 88.2
Msa1381610 AT5G02700.1 26.606 327 208 13 11 328 17 320 1.25e-18 88.6
Msa1381610 AT1G06630.5 27.966 354 226 12 22 359 11 351 1.35e-18 87.4
Msa1381610 AT1G06630.8 27.966 354 226 12 22 359 11 351 1.35e-18 87.4
Msa1381610 AT3G59000.1 26.027 438 269 15 23 419 2 425 1.57e-18 88.2
Msa1381610 AT1G06630.2 27.966 354 226 12 22 359 11 351 3.31e-18 86.7
Msa1381610 AT1G06630.6 27.966 354 226 12 22 359 11 351 3.31e-18 86.7
Msa1381610 AT1G06630.4 27.966 354 226 12 22 359 11 351 3.31e-18 86.7
Msa1381610 AT1G06630.3 27.966 354 226 12 22 359 11 351 3.31e-18 86.7
Msa1381610 AT1G06630.9 27.966 354 226 12 22 359 20 360 4.23e-18 86.7
Msa1381610 AT5G56380.2 25.792 442 290 16 23 443 2 426 4.94e-18 86.7
Msa1381610 AT5G56380.1 25.792 442 290 16 23 443 2 426 4.94e-18 86.7
Msa1381610 AT5G56400.1 24.887 442 298 10 23 451 33 453 5.03e-18 86.7
Msa1381610 AT3G58980.1 26.637 443 274 17 23 431 2 427 5.25e-18 87.0
Msa1381610 AT3G58960.1 25.885 452 264 18 23 419 2 437 5.25e-18 86.7
Msa1381610 AT1G06630.1 27.966 354 226 12 22 359 11 351 5.95e-18 86.7
Msa1381610 AT1G78750.2 25.604 414 285 14 23 418 18 426 6.28e-18 86.3
Msa1381610 AT1G78750.1 25.604 414 285 14 23 418 18 426 6.28e-18 86.3
Msa1381610 AT3G59160.1 27.436 390 225 12 22 361 12 393 6.46e-18 86.3
Msa1381610 AT5G38590.1 31.280 211 135 5 23 228 2 207 6.55e-18 84.3
Msa1381610 AT3G60040.5 25.112 446 291 15 22 443 229 655 9.64e-18 86.3
Msa1381610 AT3G60040.2 25.112 446 291 15 22 443 231 657 1.03e-17 86.3
Msa1381610 AT1G66320.1 25.400 437 290 16 17 434 23 442 1.04e-17 85.5
Msa1381610 AT3G60040.1 25.112 446 291 15 22 443 231 657 1.18e-17 86.3
Msa1381610 AT3G60040.3 25.112 446 291 15 22 443 232 658 1.21e-17 86.3
Msa1381610 AT3G60040.4 25.112 446 291 15 22 443 12 438 1.23e-17 85.9
Msa1381610 AT5G44980.2 22.951 427 302 12 22 431 3 419 1.40e-17 85.1
Msa1381610 AT5G44980.1 22.951 427 302 12 22 431 3 419 1.40e-17 85.1
Msa1381610 AT5G02930.1 26.791 321 203 13 23 328 28 331 1.44e-17 85.5
Msa1381610 AT3G58930.3 25.397 441 277 14 23 419 2 434 1.46e-17 85.5
Msa1381610 AT3G58930.1 25.397 441 277 14 23 419 2 434 1.46e-17 85.5
Msa1381610 AT3G58930.5 25.397 441 277 14 23 419 2 434 1.46e-17 85.5
Msa1381610 AT4G00160.1 24.831 443 291 14 22 445 15 434 2.92e-17 84.3
Msa1381610 AT5G22670.1 25.304 411 283 11 22 418 10 410 3.66e-17 84.0
Msa1381610 AT5G56810.2 26.568 271 179 7 15 273 5 267 4.34e-17 82.4
Msa1381610 AT3G26922.4 26.336 262 161 5 15 273 6 238 5.21e-17 81.6
Msa1381610 AT5G56810.1 24.009 454 300 14 15 450 5 431 5.30e-17 83.2
Msa1381610 AT3G52680.1 26.364 440 275 18 22 441 20 430 5.79e-17 83.6
Msa1381610 AT5G22730.1 23.855 415 287 10 22 416 27 432 6.98e-17 83.2
Msa1381610 AT5G22730.3 23.855 415 287 10 22 416 27 432 6.98e-17 83.2
Msa1381610 AT3G59190.2 26.817 399 252 15 22 388 11 401 7.64e-17 83.2
Msa1381610 AT3G58900.3 29.114 316 197 10 23 314 2 314 7.64e-17 81.6
Msa1381610 AT5G22660.2 25.952 420 271 14 22 418 12 414 1.02e-16 82.4
Msa1381610 AT3G26930.2 25.121 414 267 14 22 416 20 409 1.19e-16 82.4
Msa1381610 AT3G58900.2 28.981 314 196 10 23 312 2 312 2.10e-16 80.5
Msa1381610 AT3G58900.1 28.981 314 196 10 23 312 2 312 2.10e-16 80.5
Msa1381610 AT4G10420.1 26.599 297 178 11 135 418 22 291 2.49e-16 80.1
Msa1381610 AT3G59190.1 27.671 365 227 14 22 357 11 367 2.70e-16 80.9
Msa1381610 AT1G69630.1 25.059 427 288 14 11 418 6 419 2.73e-16 81.3
Msa1381610 AT1G55660.2 30.137 219 139 7 18 226 48 262 4.25e-16 80.1
Msa1381610 AT1G66310.1 26.303 422 280 16 12 418 8 413 4.77e-16 80.5
Msa1381610 AT1G55660.1 30.415 217 141 6 18 226 48 262 5.62e-16 80.5
Msa1381610 AT5G56390.1 26.442 416 246 18 41 429 21 403 8.98e-16 79.7
Msa1381610 AT3G49480.2 25.503 447 283 14 10 430 1 423 1.09e-15 79.3
Msa1381610 AT5G41830.2 25.310 403 242 16 22 383 12 396 1.17e-15 79.7
Msa1381610 AT2G26030.4 23.460 422 281 18 23 416 4 411 1.17e-15 79.3
Msa1381610 AT2G26030.3 23.628 419 279 17 23 416 4 406 1.38e-15 79.0
Msa1381610 AT2G26030.1 23.628 419 279 17 23 416 4 406 1.38e-15 79.0
Msa1381610 AT5G60610.2 24.879 414 264 15 23 418 2 386 1.60e-15 78.6
Msa1381610 AT5G60610.1 24.879 414 264 15 23 418 2 386 1.60e-15 78.6
Msa1381610 AT5G50270.1 26.714 423 253 16 23 418 2 394 1.78e-15 78.6
Msa1381610 AT4G13985.1 24.537 432 295 12 19 428 15 437 2.10e-15 78.6
Msa1381610 AT4G13960.2 25.581 430 272 14 23 419 2 416 2.40e-15 78.6
Msa1381610 AT4G13960.1 25.581 430 272 14 23 419 2 416 2.40e-15 78.6
Msa1381610 AT3G49030.2 23.570 437 272 17 22 445 20 407 2.56e-15 78.2
Msa1381610 AT5G27750.1 21.806 454 307 15 23 441 5 445 2.88e-15 78.2
Msa1381610 AT2G42720.1 27.072 362 226 11 23 361 2 348 3.24e-15 77.8
Msa1381610 AT3G52680.2 26.857 350 217 13 22 359 20 342 3.29e-15 77.4
Msa1381610 AT4G27050.2 26.667 375 218 17 23 361 4 357 8.72e-15 76.6
Msa1381610 AT4G27050.3 26.667 375 218 17 23 361 4 357 8.72e-15 76.6
Msa1381610 AT4G27050.5 26.667 375 218 17 23 361 4 357 8.72e-15 76.6
Msa1381610 AT4G27050.4 26.667 375 218 17 23 361 4 357 8.72e-15 76.6
Msa1381610 AT4G27050.1 26.667 375 218 17 23 361 4 357 8.72e-15 76.6
Msa1381610 AT2G04230.1 29.817 218 134 6 22 226 12 223 1.33e-14 76.3
Msa1381610 AT5G56410.1 28.155 206 128 4 36 221 16 221 1.38e-14 76.3
Msa1381610 AT5G38396.1 24.091 440 279 16 23 422 2 426 2.01e-14 75.5
Msa1381610 AT5G56690.1 25.862 406 244 17 25 401 4 381 2.12e-14 75.1
Msa1381610 AT3G03030.2 25.868 317 218 8 23 323 2 317 2.42e-14 74.3
Msa1381610 AT5G02920.1 31.188 202 120 7 11 207 16 203 2.90e-14 73.2
Msa1381610 AT4G09920.2 29.108 213 139 6 23 228 2 209 3.03e-14 73.6
Msa1381610 AT4G09920.4 29.108 213 139 6 23 228 2 209 3.03e-14 73.6
Msa1381610 AT4G09920.3 29.108 213 139 6 23 228 2 209 3.03e-14 73.6
Msa1381610 AT1G78760.1 23.364 428 291 13 22 431 15 423 3.95e-14 74.7
Msa1381610 AT1G60400.1 26.190 336 211 12 17 334 8 324 4.08e-14 74.3
Msa1381610 AT3G26922.3 25.105 239 168 6 40 273 2 234 4.25e-14 72.8
Msa1381610 AT3G26922.5 25.105 239 168 6 40 273 2 234 4.25e-14 72.8
Msa1381610 AT4G15060.2 27.371 369 213 15 17 341 18 375 5.23e-14 73.9
Msa1381610 AT4G09920.1 29.108 213 139 6 23 228 2 209 6.21e-14 72.8
Msa1381610 AT4G09920.5 29.108 213 139 6 23 228 2 209 6.21e-14 72.8
Msa1381610 AT5G35995.2 28.809 361 216 16 22 361 4 344 7.40e-14 73.9
Msa1381610 AT5G35995.1 28.809 361 216 16 22 361 4 344 7.40e-14 73.9
Msa1381610 AT3G59150.1 26.389 432 279 11 23 419 13 440 8.00e-14 73.9
Msa1381610 AT5G56820.1 22.146 438 292 12 23 445 15 418 8.48e-14 73.6
Msa1381610 AT1G13780.2 27.143 280 166 10 23 277 10 276 1.05e-13 72.4
Msa1381610 AT3G44810.1 27.273 319 212 8 28 333 12 323 1.17e-13 73.2
Msa1381610 AT2G26860.1 23.753 421 270 13 23 418 2 396 1.70e-13 72.4
Msa1381610 AT2G26860.2 23.753 421 270 13 23 418 2 396 1.70e-13 72.4
Msa1381610 AT5G56370.1 24.938 405 251 16 23 409 2 371 2.12e-13 72.4
Msa1381610 AT5G56370.2 24.938 405 251 16 23 409 2 371 2.12e-13 72.4
Msa1381610 AT3G51530.1 25.169 445 273 21 22 441 29 438 2.49e-13 72.0
Msa1381610 AT4G26340.1 23.973 438 281 16 23 442 2 405 3.26e-13 71.6
Msa1381610 AT2G29910.5 27.612 268 165 10 22 275 4 256 3.57e-13 70.9
Msa1381610 AT2G29910.7 27.612 268 165 10 22 275 4 256 3.57e-13 70.9
Msa1381610 AT2G29910.4 27.612 268 165 10 22 275 4 256 3.57e-13 70.9
Msa1381610 AT2G29910.1 27.612 268 165 10 22 275 4 256 3.57e-13 70.9
Msa1381610 AT2G29910.3 26.036 338 212 12 22 336 4 326 3.61e-13 70.9
Msa1381610 AT2G29910.2 26.036 338 212 12 22 336 4 326 3.61e-13 70.9
Msa1381610 AT4G00320.1 26.098 387 231 17 22 369 12 382 3.95e-13 71.6
Msa1381610 AT5G44960.1 21.615 421 265 13 23 418 5 385 3.99e-13 71.2
Msa1381610 AT5G15620.1 27.169 438 277 17 23 434 2 423 4.68e-13 71.2
Msa1381610 AT2G29910.6 27.612 268 165 10 22 275 28 280 5.27e-13 70.9
Msa1381610 AT3G49020.1 23.503 451 293 15 13 442 12 431 6.66e-13 70.9
Msa1381610 AT3G49040.1 24.715 263 176 8 22 273 16 267 6.87e-13 69.7
Msa1381610 AT3G26930.1 23.514 387 253 14 49 416 2 364 7.46e-13 70.5
Msa1381610 AT1G52650.1 24.476 429 279 14 23 419 2 417 7.74e-13 70.9
Msa1381610 AT1G06630.7 26.966 267 175 9 22 275 11 270 8.57e-13 69.3
Msa1381610 AT5G56370.3 25.501 349 213 13 23 359 2 315 9.59e-13 69.3
Msa1381610 AT4G03220.1 22.432 477 306 16 23 445 24 490 9.76e-13 70.5
Msa1381610 AT3G62430.1 26.773 437 277 15 23 434 2 420 1.10e-12 70.1
Msa1381610 AT5G02910.2 27.374 358 217 17 20 360 8 339 1.32e-12 69.3
Msa1381610 AT1G16940.1 25.381 197 130 5 23 213 11 196 1.33e-12 69.7
Msa1381610 AT5G02910.3 27.374 358 217 17 20 360 8 339 2.29e-12 68.6
Msa1381610 AT5G02910.1 27.374 358 217 17 20 360 8 339 2.94e-12 68.9
Msa1381610 AT1G13570.2 29.130 230 136 9 18 231 1 219 6.13e-12 66.6
Msa1381610 AT5G22610.2 23.973 438 269 17 21 416 16 431 6.21e-12 67.8
Msa1381610 AT1G21990.1 25.737 373 227 13 22 361 8 363 6.36e-12 67.8
Msa1381610 AT3G58920.1 24.898 490 288 22 23 453 2 470 6.85e-12 67.8
Msa1381610 AT5G41630.1 27.401 354 216 16 17 336 6 352 1.25e-11 67.0
Msa1381610 AT5G22610.1 24.178 426 253 16 21 416 16 401 1.48e-11 66.6
Msa1381610 AT3G42770.1 25.120 418 265 18 28 422 4 396 1.98e-11 66.6
Msa1381610 AT4G15060.1 28.311 219 149 6 23 234 172 389 2.49e-11 66.2
Msa1381610 AT1G13570.3 29.630 216 132 8 18 224 1 205 2.69e-11 65.9
Msa1381610 AT1G13570.1 29.630 216 132 8 18 224 1 205 2.69e-11 65.9
Msa1381610 AT2G29930.2 26.885 305 181 15 145 418 8 301 2.72e-11 65.1
Msa1381610 AT5G03100.2 22.642 318 219 11 19 329 5 302 3.82e-11 64.3
Msa1381610 AT5G03100.1 22.642 318 219 11 19 329 5 302 3.82e-11 64.3
Msa1381610 AT5G38390.1 24.130 431 272 17 23 419 2 411 5.13e-11 65.1

Find 104 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAATTTCTTCACATTTA+TGG 0.090305 tig0020442:-61489 Msa1381610:CDS
CAACATGCAGTTCATTATTT+TGG 0.141567 tig0020442:+62130 None:intergenic
ACTAAGTTGGATATTGTATT+TGG 0.151222 tig0020442:-62516 Msa1381610:CDS
GACTCTCATTCATTCGTTAC+AGG 0.232211 tig0020442:+63432 None:intergenic
GAAAATCAAAGACGGGTAAT+TGG 0.233443 tig0020442:+62790 None:intergenic
TAGAATTTCTTCACATTTAT+GGG 0.250696 tig0020442:-61488 Msa1381610:CDS
TATCACCCACATTATGTCTT+TGG 0.262830 tig0020442:+62931 None:intergenic
ACCTACTATTTCTAGATTCT+AGG 0.280979 tig0020442:+62577 None:intergenic
AAACTTCACCAATCTGATTT+CGG 0.294077 tig0020442:+61257 None:intergenic
CCTGCATTAACAATAGTTAC+TGG 0.304860 tig0020442:+62660 None:intergenic
GTTGATGCAAATATTGATCT+TGG 0.309181 tig0020442:-62165 Msa1381610:CDS
TAGAAAATGTCACGTTCTTA+AGG 0.323129 tig0020442:-61230 Msa1381610:CDS
ATGTGAAGAAATTCTAGTTT+AGG 0.324682 tig0020442:+61495 None:intergenic
ATCAATATTTGCATCAACTA+TGG 0.332138 tig0020442:+62170 None:intergenic
GCTATCAGATGAAACTATTC+AGG 0.345809 tig0020442:-62055 Msa1381610:intron
CCGGGATGCCGAGAAACTAT+TGG 0.361036 tig0020442:+62545 None:intergenic
ATTCTAGTTTAGGACTCTTT+CGG 0.366674 tig0020442:+61505 None:intergenic
TTAGGGATCTTACTTATCCT+TGG 0.372669 tig0020442:-61370 Msa1381610:intron
ACAAGGAAACAATTTATAGT+TGG 0.386110 tig0020442:+62204 None:intergenic
CAAGGAAACAATTTATAGTT+GGG 0.388932 tig0020442:+62205 None:intergenic
GATAACTGGTTAAGTGTTGC+TGG 0.395387 tig0020442:-60865 Msa1381610:three_prime_UTR
TGCAGTTCAAACTCTGCGCC+TGG 0.407475 tig0020442:+63379 None:intergenic
TGGTTAAGTGTTGCTGGAAA+TGG 0.418387 tig0020442:-60859 None:intergenic
AGGAACCAATTGCAAGCTTT+AGG 0.419691 tig0020442:-61147 Msa1381610:CDS
CGGGATGCCGAGAAACTATT+GGG 0.428862 tig0020442:+62546 None:intergenic
TTGATGCAAATATTGATCTT+GGG 0.429706 tig0020442:-62164 Msa1381610:CDS
TTTCTGCCCTAGTCTCTGTA+TGG 0.432516 tig0020442:-63459 Msa1381610:five_prime_UTR
AAAATCAAAGACGGGTAATT+GGG 0.435838 tig0020442:+62791 None:intergenic
CCATGCCTAAAGCTTGCAAT+TGG 0.438162 tig0020442:+61142 None:intergenic
TGTGTTACCCAATAGTTTCT+CGG 0.443039 tig0020442:-62553 Msa1381610:CDS
CCAGTAACTATTGTTAATGC+AGG 0.451607 tig0020442:-62660 Msa1381610:CDS
ACCTAGAATCTAGAAATAGT+AGG 0.456966 tig0020442:-62578 Msa1381610:CDS
AGAAAATGTCACGTTCTTAA+GGG 0.467231 tig0020442:-61229 Msa1381610:CDS
GGTGACTTAGAATTTCGCTT+TGG 0.469597 tig0020442:+62756 None:intergenic
AATTCCAACATTGAAGAAGT+TGG 0.478445 tig0020442:-62319 Msa1381610:CDS
TTTATATTCTTACAAATGCA+TGG 0.478662 tig0020442:+60914 None:intergenic
TTGGTAGTGTCGAGTCTCTC+AGG 0.484028 tig0020442:-62077 Msa1381610:CDS
ACTAGATCTACGAGGCAATC+TGG 0.484619 tig0020442:+62735 None:intergenic
TTCTCGTCTCTCTACGGAAG+AGG 0.486845 tig0020442:-62859 Msa1381610:CDS
AAGATAATATCTTCAAGCTA+TGG 0.487718 tig0020442:+62460 None:intergenic
ATGTCCAACTTCTTCAATGT+TGG 0.494500 tig0020442:+62315 None:intergenic
GGTTGGATTTGTGAAGTAGT+TGG 0.497013 tig0020442:+62709 None:intergenic
GGATCTTACTTATCCTTGGA+TGG 0.498856 tig0020442:-61366 Msa1381610:CDS
TGCCCCACACTAAATCAAAC+AGG 0.498945 tig0020442:+61007 None:intergenic
GTGCCTGTTTGATTTAGTGT+GGG 0.504671 tig0020442:-61010 Msa1381610:three_prime_UTR
AAGGACAACTCTTGTAAGAC+AGG 0.508600 tig0020442:+62381 None:intergenic
TTATATTCTTACAAATGCAT+GGG 0.510615 tig0020442:+60915 None:intergenic
TAAACTCCAAAGACATAATG+TGG 0.514913 tig0020442:-62937 Msa1381610:CDS
TACCATCAGGTACAGAATCA+AGG 0.516438 tig0020442:+62490 None:intergenic
CTAGGTTAAGTGTAAGATCA+TGG 0.524663 tig0020442:+62595 None:intergenic
TATCCAACTTAGTCAATGAC+CGG 0.525404 tig0020442:+62526 None:intergenic
AATAAAATGAAGAATTCCCT+CGG 0.525571 tig0020442:+62884 None:intergenic
CGCATCAAATTCTTGAACGA+AGG 0.528751 tig0020442:+61576 None:intergenic
TTCCTTGATTCTGTACCTGA+TGG 0.531110 tig0020442:-62492 Msa1381610:CDS
ATTGAGCTGTTCAGTCGTCT+TGG 0.533363 tig0020442:-62096 Msa1381610:CDS
GGCTTCCCATACAGAGACTA+GGG 0.539629 tig0020442:+63453 None:intergenic
ATCCCGGTCATTGACTAAGT+TGG 0.539690 tig0020442:-62529 Msa1381610:CDS
CCAATAGTTTCTCGGCATCC+CGG 0.540751 tig0020442:-62545 Msa1381610:CDS
TATTCTTTCTCGTCTCTCTA+CGG 0.542224 tig0020442:-62865 Msa1381610:CDS
CTATGGAGGTAGAGTTAACA+AGG 0.542514 tig0020442:+62187 None:intergenic
ACTTAAAGATAAAAGATTCA+CGG 0.544302 tig0020442:+62239 None:intergenic
CAATTGCAAGCTTTAGGCAT+GGG 0.547449 tig0020442:-61141 Msa1381610:CDS
AGCCGACTTCTCATTTGTGA+AGG 0.550930 tig0020442:+62425 None:intergenic
GGAGATGAACATTTACTGTA+CGG 0.552497 tig0020442:-61208 Msa1381610:CDS
TGTGCCTGTTTGATTTAGTG+TGG 0.555068 tig0020442:-61011 Msa1381610:three_prime_UTR
CTATGGAAACAGATACCATC+AGG 0.559011 tig0020442:+62477 None:intergenic
AGAGAAGATTTGAAACAGCA+AGG 0.559103 tig0020442:+61318 None:intergenic
TTCTGCCCTAGTCTCTGTAT+GGG 0.559414 tig0020442:-63458 Msa1381610:five_prime_UTR
AGTCTCGCTCTTCGCCTCAC+CGG 0.562200 tig0020442:-63413 Msa1381610:five_prime_UTR
CTTCTATATTAGCAACAAAG+TGG 0.565241 tig0020442:-62827 Msa1381610:CDS
AGATGAAGCCGAAATCAGAT+TGG 0.567186 tig0020442:-61265 Msa1381610:CDS
GCAGTTCAAACTCTGCGCCT+GGG 0.567721 tig0020442:+63380 None:intergenic
AATTCTCGAAAATCAAAGAC+GGG 0.570247 tig0020442:+62783 None:intergenic
TATCCTTGGATGGTGAAGAC+TGG 0.573895 tig0020442:-61356 Msa1381610:CDS
TGTCCAGTCTTCACCATCCA+AGG 0.574526 tig0020442:+61353 None:intergenic
CCAATTGCAAGCTTTAGGCA+TGG 0.576197 tig0020442:-61142 Msa1381610:CDS
AGATTGCCTCGTAGATCTAG+TGG 0.576199 tig0020442:-62733 Msa1381610:CDS
AGGCTTCCCATACAGAGACT+AGG 0.578165 tig0020442:+63452 None:intergenic
TACCTTCACAAATGAGAAGT+CGG 0.580484 tig0020442:-62427 Msa1381610:CDS
GAGTTTATGTAAATTTGATG+AGG 0.581101 tig0020442:+62953 None:intergenic
TCATTAACTTGCGTCACTCG+TGG 0.584904 tig0020442:-61110 Msa1381610:CDS
GAGATGAACATTTACTGTAC+GGG 0.586511 tig0020442:-61207 Msa1381610:CDS
TCACCGGTACGAACACTCCC+AGG 0.595293 tig0020442:-63397 Msa1381610:five_prime_UTR
CAGTAACTATTGTTAATGCA+GGG 0.596957 tig0020442:-62659 Msa1381610:CDS
ATAAAATGAAGAATTCCCTC+GGG 0.598954 tig0020442:+62885 None:intergenic
AGAATTTCTTCACATTTATG+GGG 0.604749 tig0020442:-61487 Msa1381610:intron
TGCCTGTTTGATTTAGTGTG+GGG 0.604837 tig0020442:-61009 Msa1381610:three_prime_UTR
CGAAGAAGCTGGCTGATGTG+AGG 0.621819 tig0020442:-61167 Msa1381610:CDS
ATGATTAGCGATTTACCCGA+GGG 0.622620 tig0020442:-62900 Msa1381610:CDS
GCGCCTGGGAGTGTTCGTAC+CGG 0.623233 tig0020442:+63394 None:intergenic
ATGTCTGCTAATACTTCACA+AGG 0.623262 tig0020442:+61531 None:intergenic
TAATTCTCGAAAATCAAAGA+CGG 0.624079 tig0020442:+62782 None:intergenic
GGAACTACAATCAAAATCTG+AGG 0.624111 tig0020442:+61044 None:intergenic
AAACAGGCACAGTCATCCGA+TGG 0.626804 tig0020442:+61023 None:intergenic
AATATTTGCATCAACTATGG+AGG 0.633314 tig0020442:+62173 None:intergenic
ATCCAACTTAGTCAATGACC+GGG 0.636154 tig0020442:+62527 None:intergenic
CACATAAGAAAACGAAACGC+AGG 0.636554 tig0020442:-63482 None:intergenic
CAACAAAGTGGAGATACTTG+TGG 0.640766 tig0020442:-62815 Msa1381610:CDS
TATGATTAGCGATTTACCCG+AGG 0.648778 tig0020442:-62901 Msa1381610:CDS
TGGGAGTGTTCGTACCGGTG+AGG 0.669896 tig0020442:+63399 None:intergenic
AAACTCCAAAGACATAATGT+GGG 0.676914 tig0020442:-62936 Msa1381610:CDS
AGGACAACTCTTGTAAGACA+GGG 0.690229 tig0020442:+62382 None:intergenic
GGGAAAATAACGATTCCACA+AGG 0.691654 tig0020442:+60935 None:intergenic
GTTGGTCCACTAGATCTACG+AGG 0.818443 tig0020442:+62727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAGTTAAATTAAATGA+GGG + tig0020442:62432-62451 None:intergenic 10.0%
!! ATAAAAAGTTAAATTAAATG+AGG + tig0020442:62433-62452 None:intergenic 10.0%
!! AAAAAGTTAAATTAAATGAG+GGG + tig0020442:62431-62450 None:intergenic 15.0%
!! ATGTAATTGATCAAATTTAA+TGG + tig0020442:62531-62550 None:intergenic 15.0%
!!! AATTTTTCAATCGTTTGTTT+GGG - tig0020442:61082-61101 Msa1381610:three_prime_UTR 20.0%
!! TTGAATACATAATAACAATG+TGG + tig0020442:61144-61163 None:intergenic 20.0%
!! GTTTAATTAACAACATTTAG+TGG - tig0020442:61225-61244 Msa1381610:CDS 20.0%
!! ACTTAAAGATAAAAGATTCA+CGG + tig0020442:62103-62122 None:intergenic 20.0%
!! TTGCTTATATTTCATTACAA+AGG + tig0020442:62363-62382 None:intergenic 20.0%
!!! ACAGACTTGATTTTTTTTAT+TGG - tig0020442:62498-62517 Msa1381610:CDS 20.0%
!! GATCAATTACATTTCTTAAT+AGG - tig0020442:62539-62558 Msa1381610:CDS 20.0%
!! AAGAATATGCAAATAATACA+AGG + tig0020442:62663-62682 None:intergenic 20.0%
!! TAGAATTTCTTCACATTTAT+GGG - tig0020442:62851-62870 Msa1381610:CDS 20.0%
!!! TTATGTATTGATTCTTGTTT+AGG - tig0020442:62951-62970 Msa1381610:CDS 20.0%
!!! TATGTATTGATTCTTGTTTA+GGG - tig0020442:62952-62971 Msa1381610:CDS 20.0%
!! TTATATTCTTACAAATGCAT+GGG + tig0020442:63427-63446 None:intergenic 20.0%
!! TTTATATTCTTACAAATGCA+TGG + tig0020442:63428-63447 None:intergenic 20.0%
!!! TGTTTTATTTGATTGATAAC+TGG - tig0020442:63460-63479 Msa1381610:five_prime_UTR 20.0%
! TGGAAATGATTTGAATACAA+CGG + tig0020442:61063-61082 None:intergenic 25.0%
! CAAACAAACGATTGAAAAAT+TGG + tig0020442:61083-61102 None:intergenic 25.0%
!!! CAATTTTTCAATCGTTTGTT+TGG - tig0020442:61081-61100 Msa1381610:three_prime_UTR 25.0%
! ATTAAACAACAAACAGACTT+AGG + tig0020442:61212-61231 None:intergenic 25.0%
!!! CATTGATTCATATGAGAATA+AGG + tig0020442:61271-61290 None:intergenic 25.0%
!!! CAATGATTTTTTACCATTCT+TGG - tig0020442:61286-61305 Msa1381610:CDS 25.0%
! GAGTTTATGTAAATTTGATG+AGG + tig0020442:61389-61408 None:intergenic 25.0%
! AATAAAATGAAGAATTCCCT+CGG + tig0020442:61458-61477 None:intergenic 25.0%
! TAATTCTCGAAAATCAAAGA+CGG + tig0020442:61560-61579 None:intergenic 25.0%
!!! CAATGAAGAGCTTTTTTATA+CGG + tig0020442:61654-61673 None:intergenic 25.0%
!! ACTAAGTTGGATATTGTATT+TGG - tig0020442:61823-61842 Msa1381610:intron 25.0%
! AAGATAATATCTTCAAGCTA+TGG + tig0020442:61882-61901 None:intergenic 25.0%
! CAAGGAAACAATTTATAGTT+GGG + tig0020442:62137-62156 None:intergenic 25.0%
! ACAAGGAAACAATTTATAGT+TGG + tig0020442:62138-62157 None:intergenic 25.0%
! ATCAATATTTGCATCAACTA+TGG + tig0020442:62172-62191 None:intergenic 25.0%
! TTGATGCAAATATTGATCTT+GGG - tig0020442:62175-62194 Msa1381610:CDS 25.0%
! ATTGTTAAATAAGATCGAAG+TGG + tig0020442:62393-62412 None:intergenic 25.0%
! ATGACCCAATTTATTAATCA+TGG - tig0020442:62460-62479 Msa1381610:CDS 25.0%
! AAACAAAAACAAGTCAAGAT+CGG + tig0020442:62697-62716 None:intergenic 25.0%
!!! ATGTGAAGAAATTCTAGTTT+AGG + tig0020442:62847-62866 None:intergenic 25.0%
! CTAGAATTTCTTCACATTTA+TGG - tig0020442:62850-62869 Msa1381610:CDS 25.0%
! AGAATTTCTTCACATTTATG+GGG - tig0020442:62852-62871 Msa1381610:CDS 25.0%
! AAATTATTGTTAGCCGTTAA+AGG + tig0020442:62914-62933 None:intergenic 25.0%
ATACAACGGAATGATTTGAA+CGG + tig0020442:61049-61068 None:intergenic 30.0%
AATAACAATGTGGATGAGAT+TGG + tig0020442:61134-61153 None:intergenic 30.0%
!!! TGATTTTTTACCATTCTTGG+TGG - tig0020442:61289-61308 Msa1381610:CDS 30.0%
!!! TTTCGTTTCATGTTTTAACC+AGG - tig0020442:61339-61358 Msa1381610:CDS 30.0%
TAAACTCCAAAGACATAATG+TGG - tig0020442:61402-61421 Msa1381610:intron 30.0%
AAACTCCAAAGACATAATGT+GGG - tig0020442:61403-61422 Msa1381610:intron 30.0%
ATAAAATGAAGAATTCCCTC+GGG + tig0020442:61457-61476 None:intergenic 30.0%
CTTCTATATTAGCAACAAAG+TGG - tig0020442:61512-61531 Msa1381610:CDS 30.0%
AAAATCAAAGACGGGTAATT+GGG + tig0020442:61551-61570 None:intergenic 30.0%
AATTCTCGAAAATCAAAGAC+GGG + tig0020442:61559-61578 None:intergenic 30.0%
CAGTAACTATTGTTAATGCA+GGG - tig0020442:61680-61699 Msa1381610:intron 30.0%
ACCTAGAATCTAGAAATAGT+AGG - tig0020442:61761-61780 Msa1381610:intron 30.0%
!! ACCTACTATTTCTAGATTCT+AGG + tig0020442:61765-61784 None:intergenic 30.0%
AATTCCAACATTGAAGAAGT+TGG - tig0020442:62020-62039 Msa1381610:intron 30.0%
AATATTTGCATCAACTATGG+AGG + tig0020442:62169-62188 None:intergenic 30.0%
GTTGATGCAAATATTGATCT+TGG - tig0020442:62174-62193 Msa1381610:CDS 30.0%
! CAACATGCAGTTCATTATTT+TGG + tig0020442:62212-62231 None:intergenic 30.0%
ACCCAATTTATTAATCATGG+AGG - tig0020442:62463-62482 Msa1381610:CDS 30.0%
CCCTCCATGATTAATAAATT+GGG + tig0020442:62467-62486 None:intergenic 30.0%
CCCAATTTATTAATCATGGA+GGG - tig0020442:62464-62483 Msa1381610:CDS 30.0%
ACCCTCCATGATTAATAAAT+TGG + tig0020442:62468-62487 None:intergenic 30.0%
TCACACTTCGTAATACTTAA+GGG + tig0020442:62583-62602 None:intergenic 30.0%
ATCACACTTCGTAATACTTA+AGG + tig0020442:62584-62603 None:intergenic 30.0%
TGTCTATTGTGAATGTTGAT+TGG - tig0020442:62631-62650 Msa1381610:CDS 30.0%
!! ATTCTAGTTTAGGACTCTTT+CGG + tig0020442:62837-62856 None:intergenic 30.0%
AAACTTCACCAATCTGATTT+CGG + tig0020442:63085-63104 None:intergenic 30.0%
TAGAAAATGTCACGTTCTTA+AGG - tig0020442:63109-63128 Msa1381610:intron 30.0%
AGAAAATGTCACGTTCTTAA+GGG - tig0020442:63110-63129 Msa1381610:intron 30.0%
ATCAAAAAAATCGAAGAAGC+TGG - tig0020442:63161-63180 Msa1381610:intron 30.0%
!!! GATTTTGATTGTAGTTCCAT+CGG - tig0020442:63300-63319 Msa1381610:intron 30.0%
! TTTTCACATAGATTACCTTG+TGG - tig0020442:63389-63408 Msa1381610:five_prime_UTR 30.0%
TATCACCCACATTATGTCTT+TGG + tig0020442:61411-61430 None:intergenic 35.0%
TATTCTTTCTCGTCTCTCTA+CGG - tig0020442:61474-61493 Msa1381610:intron 35.0%
GAAAATCAAAGACGGGTAAT+TGG + tig0020442:61552-61571 None:intergenic 35.0%
!!! GAAGAGCTTTTTTATACGGT+TGG + tig0020442:61650-61669 None:intergenic 35.0%
CCTGCATTAACAATAGTTAC+TGG + tig0020442:61682-61701 None:intergenic 35.0%
CCAGTAACTATTGTTAATGC+AGG - tig0020442:61679-61698 Msa1381610:intron 35.0%
CTAGGTTAAGTGTAAGATCA+TGG + tig0020442:61747-61766 None:intergenic 35.0%
TGTGTTACCCAATAGTTTCT+CGG - tig0020442:61786-61805 Msa1381610:intron 35.0%
TATCCAACTTAGTCAATGAC+CGG + tig0020442:61816-61835 None:intergenic 35.0%
TACCTTCACAAATGAGAAGT+CGG - tig0020442:61912-61931 Msa1381610:intron 35.0%
TGTCCTTCGAAAAATGTTAC+TGG - tig0020442:61974-61993 Msa1381610:intron 35.0%
GTCCTTCGAAAAATGTTACT+GGG - tig0020442:61975-61994 Msa1381610:intron 35.0%
ATGTCCAACTTCTTCAATGT+TGG + tig0020442:62027-62046 None:intergenic 35.0%
GCTATCAGATGAAACTATTC+AGG - tig0020442:62284-62303 Msa1381610:CDS 35.0%
CACACTTCGTAATACTTAAG+GGG + tig0020442:62582-62601 None:intergenic 35.0%
CATAGTTAAGACACTAGCAA+GGG + tig0020442:62720-62739 None:intergenic 35.0%
ATGTCTGCTAATACTTCACA+AGG + tig0020442:62811-62830 None:intergenic 35.0%
! ATCTTGCTCCAGATTTTCTT+CGG - tig0020442:62885-62904 Msa1381610:CDS 35.0%
TTATTGTTAGCCGTTAAAGG+TGG + tig0020442:62911-62930 None:intergenic 35.0%
TTAGGGATCTTACTTATCCT+TGG - tig0020442:62969-62988 Msa1381610:CDS 35.0%
! AGAGAAGATTTGAAACAGCA+AGG + tig0020442:63024-63043 None:intergenic 35.0%
GGAGATGAACATTTACTGTA+CGG - tig0020442:63131-63150 Msa1381610:intron 35.0%
GAGATGAACATTTACTGTAC+GGG - tig0020442:63132-63151 Msa1381610:intron 35.0%
GGAACTACAATCAAAATCTG+AGG + tig0020442:63298-63317 None:intergenic 35.0%
GACTCTCATTCATTCGTTAC+AGG + tig0020442:60910-60929 None:intergenic 40.0%
AAGTACGAAACCACCAAGAA+TGG + tig0020442:61302-61321 None:intergenic 40.0%
! TTTTAACCAGGCATAGCTCA+TGG - tig0020442:61351-61370 Msa1381610:CDS 40.0%
TATGATTAGCGATTTACCCG+AGG - tig0020442:61438-61457 Msa1381610:intron 40.0%
ATGATTAGCGATTTACCCGA+GGG - tig0020442:61439-61458 Msa1381610:intron 40.0%
CAACAAAGTGGAGATACTTG+TGG - tig0020442:61524-61543 Msa1381610:CDS 40.0%
GGTGACTTAGAATTTCGCTT+TGG + tig0020442:61586-61605 None:intergenic 40.0%
GGTTGGATTTGTGAAGTAGT+TGG + tig0020442:61633-61652 None:intergenic 40.0%
ATCCAACTTAGTCAATGACC+GGG + tig0020442:61815-61834 None:intergenic 40.0%
TTCCTTGATTCTGTACCTGA+TGG - tig0020442:61847-61866 Msa1381610:intron 40.0%
TACCATCAGGTACAGAATCA+AGG + tig0020442:61852-61871 None:intergenic 40.0%
CTATGGAAACAGATACCATC+AGG + tig0020442:61865-61884 None:intergenic 40.0%
!!! TCGGCTCAAAGACTTTTTTC+TGG - tig0020442:61931-61950 Msa1381610:intron 40.0%
!!! CGGCTCAAAGACTTTTTTCT+GGG - tig0020442:61932-61951 Msa1381610:intron 40.0%
AGGACAACTCTTGTAAGACA+GGG + tig0020442:61960-61979 None:intergenic 40.0%
AAGGACAACTCTTGTAAGAC+AGG + tig0020442:61961-61980 None:intergenic 40.0%
!! CACCCAGTAACATTTTTCGA+AGG + tig0020442:61980-61999 None:intergenic 40.0%
CTATGGAGGTAGAGTTAACA+AGG + tig0020442:62155-62174 None:intergenic 40.0%
GCATAGTTAAGACACTAGCA+AGG + tig0020442:62721-62740 None:intergenic 40.0%
CGCATCAAATTCTTGAACGA+AGG + tig0020442:62766-62785 None:intergenic 40.0%
! TTTTCTTCGGCCACCTTTAA+CGG - tig0020442:62898-62917 Msa1381610:CDS 40.0%
GGATCTTACTTATCCTTGGA+TGG - tig0020442:62973-62992 Msa1381610:exon 40.0%
AGATGAAGCCGAAATCAGAT+TGG - tig0020442:63074-63093 Msa1381610:intron 40.0%
AGGAACCAATTGCAAGCTTT+AGG - tig0020442:63192-63211 Msa1381610:intron 40.0%
!! CAATTGCAAGCTTTAGGCAT+GGG - tig0020442:63198-63217 Msa1381610:intron 40.0%
!!! CACTCGTGGTTTTGATGTTT+TGG - tig0020442:63243-63262 Msa1381610:intron 40.0%
!!! TCGTGGTTTTGATGTTTTGG+CGG - tig0020442:63246-63265 Msa1381610:intron 40.0%
! TGTGCCTGTTTGATTTAGTG+TGG - tig0020442:63328-63347 Msa1381610:intron 40.0%
! GTGCCTGTTTGATTTAGTGT+GGG - tig0020442:63329-63348 Msa1381610:intron 40.0%
! TGCCTGTTTGATTTAGTGTG+GGG - tig0020442:63330-63349 Msa1381610:intron 40.0%
!! TTAGTGTGGGGCATTTTCAA+TGG - tig0020442:63342-63361 Msa1381610:intron 40.0%
GGGAAAATAACGATTCCACA+AGG + tig0020442:63407-63426 None:intergenic 40.0%
! GATAACTGGTTAAGTGTTGC+TGG - tig0020442:63474-63493 Msa1381610:five_prime_UTR 40.0%
TTTCTGCCCTAGTCTCTGTA+TGG - tig0020442:60880-60899 Msa1381610:three_prime_UTR 45.0%
TTCTGCCCTAGTCTCTGTAT+GGG - tig0020442:60881-60900 Msa1381610:three_prime_UTR 45.0%
ACTAGATCTACGAGGCAATC+TGG + tig0020442:61607-61626 None:intergenic 45.0%
AGATTGCCTCGTAGATCTAG+TGG - tig0020442:61606-61625 Msa1381610:CDS 45.0%
! ATCCCGGTCATTGACTAAGT+TGG - tig0020442:61810-61829 Msa1381610:intron 45.0%
! AGCCGACTTCTCATTTGTGA+AGG + tig0020442:61917-61936 None:intergenic 45.0%
ATTGAGCTGTTCAGTCGTCT+TGG - tig0020442:62243-62262 Msa1381610:CDS 45.0%
AAAGGTGGCCGAAGAAAATC+TGG + tig0020442:62896-62915 None:intergenic 45.0%
TATCCTTGGATGGTGAAGAC+TGG - tig0020442:62983-63002 Msa1381610:intron 45.0%
CCATGCCTAAAGCTTGCAAT+TGG + tig0020442:63200-63219 None:intergenic 45.0%
!! CCAATTGCAAGCTTTAGGCA+TGG - tig0020442:63197-63216 Msa1381610:intron 45.0%
!! TCATTAACTTGCGTCACTCG+TGG - tig0020442:63229-63248 Msa1381610:intron 45.0%
!!! CGTGGTTTTGATGTTTTGGC+GGG - tig0020442:63247-63266 Msa1381610:intron 45.0%
TGCCCCACACTAAATCAAAC+AGG + tig0020442:63335-63354 None:intergenic 45.0%
GGCTTCCCATACAGAGACTA+GGG + tig0020442:60889-60908 None:intergenic 50.0%
AGGCTTCCCATACAGAGACT+AGG + tig0020442:60890-60909 None:intergenic 50.0%
TAGAAGCCATGAGCTATGCC+TGG + tig0020442:61360-61379 None:intergenic 50.0%
TTCTCGTCTCTCTACGGAAG+AGG - tig0020442:61480-61499 Msa1381610:intron 50.0%
GTTGGTCCACTAGATCTACG+AGG + tig0020442:61615-61634 None:intergenic 50.0%
CGGGATGCCGAGAAACTATT+GGG + tig0020442:61796-61815 None:intergenic 50.0%
CCAATAGTTTCTCGGCATCC+CGG - tig0020442:61794-61813 Msa1381610:intron 50.0%
!! TTGGTAGTGTCGAGTCTCTC+AGG - tig0020442:62262-62281 Msa1381610:CDS 50.0%
TGTCCAGTCTTCACCATCCA+AGG + tig0020442:62989-63008 None:intergenic 50.0%
AAACAGGCACAGTCATCCGA+TGG + tig0020442:63319-63338 None:intergenic 50.0%
GCAGTTCAAACTCTGCGCCT+GGG + tig0020442:60962-60981 None:intergenic 55.0%
TGCAGTTCAAACTCTGCGCC+TGG + tig0020442:60963-60982 None:intergenic 55.0%
CCGGGATGCCGAGAAACTAT+TGG + tig0020442:61797-61816 None:intergenic 55.0%
CGAAGAAGCTGGCTGATGTG+AGG - tig0020442:63172-63191 Msa1381610:intron 55.0%
AGTCTCGCTCTTCGCCTCAC+CGG - tig0020442:60926-60945 Msa1381610:three_prime_UTR 60.0%
!! TGGGAGTGTTCGTACCGGTG+AGG + tig0020442:60943-60962 None:intergenic 60.0%
TCACCGGTACGAACACTCCC+AGG - tig0020442:60942-60961 Msa1381610:three_prime_UTR 60.0%
!! GCGCCTGGGAGTGTTCGTAC+CGG + tig0020442:60948-60967 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0020442 gene 60862 63499 60862 ID=Msa1381610;Name=Msa1381610
tig0020442 mRNA 60862 63499 60862 ID=Msa1381610-mRNA-1;Parent=Msa1381610;Name=Msa1381610-mRNA-1;_AED=0.43;_eAED=0.43;_QI=137|1|1|1|0.66|0.5|4|242|455
tig0020442 exon 60862 61388 60862 ID=Msa1381610-mRNA-1:exon:7717;Parent=Msa1381610-mRNA-1
tig0020442 exon 61488 61634 61488 ID=Msa1381610-mRNA-1:exon:7716;Parent=Msa1381610-mRNA-1
tig0020442 exon 62056 63000 62056 ID=Msa1381610-mRNA-1:exon:7715;Parent=Msa1381610-mRNA-1
tig0020442 exon 63372 63499 63372 ID=Msa1381610-mRNA-1:exon:7714;Parent=Msa1381610-mRNA-1
tig0020442 five_prime_UTR 63372 63499 63372 ID=Msa1381610-mRNA-1:five_prime_utr;Parent=Msa1381610-mRNA-1
tig0020442 five_prime_UTR 62992 63000 62992 ID=Msa1381610-mRNA-1:five_prime_utr;Parent=Msa1381610-mRNA-1
tig0020442 CDS 62056 62991 62056 ID=Msa1381610-mRNA-1:cds;Parent=Msa1381610-mRNA-1
tig0020442 CDS 61488 61634 61488 ID=Msa1381610-mRNA-1:cds;Parent=Msa1381610-mRNA-1
tig0020442 CDS 61104 61388 61104 ID=Msa1381610-mRNA-1:cds;Parent=Msa1381610-mRNA-1
tig0020442 three_prime_UTR 60862 61103 60862 ID=Msa1381610-mRNA-1:three_prime_utr;Parent=Msa1381610-mRNA-1
Gene Sequence

>Msa1381610

ATGGCTTCTACAATCTCCTCATCAAATTTACATAAACTCCAAAGACATAATGTGGGTGATATGAAAGATATGATTAGCGATTTACCCGAGGGAATTCTTCATTTTATTCTTTCTCGTCTCTCTACGGAAGAGGCTGTAAGAACTTCTATATTAGCAACAAAGTGGAGATACTTGTGGACCCAATTACCCGTCTTTGATTTTCGAGAATTATCTCCAAAGCGAAATTCTAAGTCACCAGATTGCCTCGTAGATCTAGTGGACCAACTACTTCACAAATCCAACCGTATAAAAAAGCTCTTCATTGAATTACCAGTAACTATTGTTAATGCAGGGAAAGTTAGTTCTATGTTAACTTCTGCATTGATGCATGATGTCCATGATCTTACACTTAACCTAGAATCTAGAAATAGTAGGTTTGTGTTACCCAATAGTTTCTCGGCATCCCGGTCATTGACTAAGTTGGATATTGTATTTGGCTTCCTTGATTCTGTACCTGATGGTATCTGTTTCCATAGCTTGAAGATATTATCTTTTGCACATCTTACCTTCACAAATGAGAAGTCGGCTCAAAGACTTTTTTCTGGGTGCCCTGTCTTACAAGAGTTGTCCTTCGAAAAATGTTACTGGGTGAACATAAACATTAGTGTTGCAATTCCAACATTGAAGAAGTTGGACATCTTTTTCAGATCTTCTAGTCTAGATCGTAACAGTTGTATGTTCGAAATTGATGCCGTGAATCTTTTATCTTTAAGTTACAAAAGTAACCCAACTATAAATTGTTTCCTTGTTAACTCTACCTCCATAGTTGATGCAAATATTGATCTTGGGTTTTTCTGTGTCCAAAATAATGAACTGCATGTTGCTGTATTTGCAATTGAGCTGTTCAGTCGTCTTGGTAGTGTCGAGTCTCTCAGGCTATCAGATGAAACTATTCAGTGTCTTAACTATGCAAAATCTGCTCTTCATCTTTTACCTTCGTTCAAGAATTTGATGCGTCTTGAAGTGCATTTCGATGATCCTTGTGAAGTATTAGCAGACATTCTCCGAAAGAGTCCTAAACTAGAATTTCTTCACATTTATGGGGGATCTTACTTATCCTTGGATGGTGAAGACTGGACATCAGATTCATTGCCTTGCTGTTTCAAATCTTCTCTCAAATCATGTGATATTTCAGATTTTCGTGCAGATGAAGCCGAAATCAGATTGGTGAAGTTTTTGTTAGAAAATGTCACGTTCTTAAGGGAGATGAACATTTACTGTACGGGATATCTATCAAAAAAATCGAAGAAGCTGGCTGATGTGAGGAACCAATTGCAAGCTTTAGGCATGGGAAGTTGTGTCATTAACTTGCGTCACTCGTGGTTTTGA

Protein sequence

>Msa1381610

MASTISSSNLHKLQRHNVGDMKDMISDLPEGILHFILSRLSTEEAVRTSILATKWRYLWTQLPVFDFRELSPKRNSKSPDCLVDLVDQLLHKSNRIKKLFIELPVTIVNAGKVSSMLTSALMHDVHDLTLNLESRNSRFVLPNSFSASRSLTKLDIVFGFLDSVPDGICFHSLKILSFAHLTFTNEKSAQRLFSGCPVLQELSFEKCYWVNINISVAIPTLKKLDIFFRSSSLDRNSCMFEIDAVNLLSLSYKSNPTINCFLVNSTSIVDANIDLGFFCVQNNELHVAVFAIELFSRLGSVESLRLSDETIQCLNYAKSALHLLPSFKNLMRLEVHFDDPCEVLADILRKSPKLEFLHIYGGSYLSLDGEDWTSDSLPCCFKSSLKSCDISDFRADEAEIRLVKFLLENVTFLREMNIYCTGYLSKKSKKLADVRNQLQALGMGSCVINLRHSWF*