Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609690 | AES89935.1 | 86.268 | 284 | 10 | 2 | 12 | 269 | 4 | 284 | 4.67e-173 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609690 | sp|Q9C554|EXPA1_ARATH | 72.691 | 249 | 40 | 3 | 48 | 268 | 1 | 249 | 4.15e-126 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609690 | Msa0650470 | 0.835961 | 1.236976e-56 | -8.615850e-47 |
| Msa0609690 | Msa0692280 | 0.881187 | 2.956318e-70 | -8.615850e-47 |
| Msa0609690 | Msa0815420 | 0.815781 | 7.753086e-52 | -8.615850e-47 |
| Msa0609690 | Msa1144510 | 0.810737 | 9.935298e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609690 | MtrunA17_Chr4g0042521 | 88.306 | 248 | 3 | 1 | 48 | 269 | 1 | 248 | 2.72e-159 | 442 |
| Msa0609690 | MtrunA17_Chr5g0417701 | 76.518 | 247 | 32 | 1 | 48 | 268 | 1 | 247 | 3.18e-140 | 394 |
| Msa0609690 | MtrunA17_Chr3g0128791 | 67.984 | 253 | 54 | 2 | 43 | 268 | 1 | 253 | 1.26e-122 | 350 |
| Msa0609690 | MtrunA17_Chr3g0128801 | 70.248 | 242 | 46 | 1 | 53 | 268 | 12 | 253 | 3.51e-122 | 348 |
| Msa0609690 | MtrunA17_Chr3g0092071 | 72.650 | 234 | 38 | 1 | 61 | 268 | 14 | 247 | 1.55e-121 | 347 |
| Msa0609690 | MtrunA17_Chr5g0432611 | 67.347 | 245 | 53 | 2 | 51 | 268 | 7 | 251 | 2.49e-115 | 331 |
| Msa0609690 | MtrunA17_Chr3g0107311 | 66.532 | 248 | 57 | 1 | 47 | 268 | 7 | 254 | 2.37e-111 | 321 |
| Msa0609690 | MtrunA17_Chr3g0107291 | 64.479 | 259 | 62 | 4 | 39 | 268 | 3 | 260 | 6.49e-110 | 318 |
| Msa0609690 | MtrunA17_Chr7g0217661 | 65.060 | 249 | 50 | 4 | 48 | 268 | 1 | 240 | 9.41e-109 | 314 |
| Msa0609690 | MtrunA17_Chr5g0435311 | 61.044 | 249 | 68 | 3 | 48 | 268 | 59 | 306 | 1.78e-104 | 306 |
| Msa0609690 | MtrunA17_Chr7g0238681 | 59.449 | 254 | 71 | 4 | 40 | 265 | 4 | 253 | 2.01e-100 | 293 |
| Msa0609690 | MtrunA17_Chr2g0328261 | 59.144 | 257 | 69 | 5 | 43 | 265 | 1 | 255 | 4.47e-100 | 293 |
| Msa0609690 | MtrunA17_Chr6g0453341 | 64.683 | 252 | 52 | 4 | 47 | 269 | 10 | 253 | 7.61e-99 | 289 |
| Msa0609690 | MtrunA17_Chr4g0031621 | 56.917 | 253 | 76 | 4 | 45 | 265 | 2 | 253 | 4.70e-92 | 272 |
| Msa0609690 | MtrunA17_Chr1g0193631 | 56.710 | 231 | 70 | 4 | 63 | 263 | 21 | 251 | 1.79e-87 | 261 |
| Msa0609690 | MtrunA17_Chr7g0271001 | 53.469 | 245 | 79 | 5 | 54 | 263 | 4 | 248 | 2.01e-85 | 255 |
| Msa0609690 | MtrunA17_Chr1g0157061 | 56.279 | 215 | 65 | 3 | 79 | 264 | 22 | 236 | 3.57e-84 | 251 |
| Msa0609690 | MtrunA17_Chr4g0069711 | 49.333 | 225 | 83 | 4 | 70 | 265 | 59 | 281 | 2.16e-75 | 231 |
| Msa0609690 | MtrunA17_Chr7g0218741 | 47.148 | 263 | 98 | 6 | 34 | 267 | 1 | 251 | 8.34e-75 | 228 |
| Msa0609690 | MtrunA17_Chr5g0433841 | 50.000 | 224 | 85 | 2 | 72 | 268 | 41 | 264 | 8.92e-73 | 223 |
| Msa0609690 | MtrunA17_Chr7g0218751 | 46.154 | 260 | 99 | 5 | 34 | 265 | 1 | 247 | 2.55e-72 | 222 |
| Msa0609690 | MtrunA17_Chr8g0360041 | 45.817 | 251 | 102 | 4 | 44 | 266 | 7 | 251 | 1.70e-71 | 220 |
| Msa0609690 | MtrunA17_Chr5g0398271 | 48.869 | 221 | 85 | 3 | 72 | 264 | 37 | 257 | 1.09e-68 | 213 |
| Msa0609690 | MtrunA17_Chr4g0021561 | 46.222 | 225 | 93 | 2 | 72 | 268 | 32 | 256 | 3.56e-67 | 209 |
| Msa0609690 | MtrunA17_Chr7g0218761 | 50.249 | 201 | 70 | 3 | 91 | 263 | 8 | 206 | 2.49e-65 | 202 |
| Msa0609690 | MtrunA17_Chr4g0057091 | 47.964 | 221 | 87 | 3 | 72 | 264 | 36 | 256 | 2.50e-65 | 204 |
| Msa0609690 | MtrunA17_Chr3g0109801 | 46.121 | 232 | 90 | 5 | 72 | 268 | 53 | 284 | 3.40e-63 | 200 |
| Msa0609690 | MtrunA17_Chr8g0360721 | 48.756 | 201 | 73 | 3 | 91 | 263 | 17 | 215 | 4.34e-61 | 192 |
| Msa0609690 | MtrunA17_Chr4g0022841 | 52.991 | 117 | 55 | 0 | 150 | 266 | 1 | 117 | 1.46e-38 | 131 |
| Msa0609690 | MtrunA17_Chr2g0324181 | 57.426 | 101 | 43 | 0 | 168 | 268 | 17 | 117 | 1.43e-35 | 123 |
| Msa0609690 | MtrunA17_Chr2g0324191 | 37.600 | 125 | 50 | 3 | 72 | 168 | 28 | 152 | 4.25e-22 | 89.7 |
| Msa0609690 | MtrunA17_Chr8g0359971 | 54.545 | 77 | 34 | 1 | 189 | 264 | 1 | 77 | 9.82e-22 | 86.7 |
| Msa0609690 | MtrunA17_Chr2g0324221 | 28.326 | 233 | 113 | 9 | 72 | 264 | 35 | 253 | 4.42e-18 | 81.3 |
| Msa0609690 | MtrunA17_Chr8g0359981 | 50.000 | 88 | 30 | 5 | 85 | 168 | 4 | 81 | 8.48e-18 | 77.4 |
| Msa0609690 | MtrunA17_Chr2g0324201 | 28.755 | 233 | 112 | 10 | 72 | 264 | 33 | 251 | 7.99e-17 | 77.8 |
| Msa0609690 | MtrunA17_Chr4g0022851 | 44.330 | 97 | 22 | 3 | 72 | 140 | 32 | 124 | 3.03e-16 | 73.2 |
| Msa0609690 | MtrunA17_Chr1g0193571 | 60.784 | 51 | 20 | 0 | 213 | 263 | 4 | 54 | 1.70e-15 | 69.3 |
| Msa0609690 | MtrunA17_Chr4g0021641 | 26.882 | 279 | 142 | 12 | 24 | 264 | 5 | 259 | 1.87e-15 | 74.3 |
| Msa0609690 | MtrunA17_Chr7g0231221 | 29.412 | 221 | 118 | 10 | 77 | 263 | 53 | 269 | 6.79e-15 | 72.8 |
| Msa0609690 | MtrunA17_Chr4g0012801 | 27.273 | 231 | 115 | 10 | 72 | 263 | 42 | 258 | 2.11e-13 | 68.6 |
| Msa0609690 | MtrunA17_Chr4g0055601 | 27.966 | 236 | 144 | 8 | 55 | 264 | 11 | 246 | 7.65e-13 | 66.6 |
| Msa0609690 | MtrunA17_Chr7g0231211 | 26.241 | 282 | 131 | 14 | 41 | 263 | 1 | 264 | 1.14e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609690 | AT1G69530.2 | 72.691 | 249 | 40 | 3 | 48 | 268 | 1 | 249 | 4.21e-127 | 361 |
| Msa0609690 | AT1G69530.1 | 72.691 | 249 | 40 | 3 | 48 | 268 | 1 | 249 | 4.21e-127 | 361 |
| Msa0609690 | AT2G03090.1 | 68.254 | 252 | 54 | 1 | 43 | 268 | 1 | 252 | 2.24e-126 | 359 |
| Msa0609690 | AT1G69530.3 | 72.653 | 245 | 39 | 3 | 48 | 264 | 1 | 245 | 6.33e-125 | 357 |
| Msa0609690 | AT1G26770.1 | 72.177 | 248 | 42 | 2 | 48 | 268 | 1 | 248 | 5.21e-118 | 338 |
| Msa0609690 | AT1G26770.2 | 71.888 | 249 | 43 | 2 | 47 | 268 | 10 | 258 | 8.05e-118 | 338 |
| Msa0609690 | AT5G56320.1 | 64.542 | 251 | 59 | 2 | 48 | 268 | 1 | 251 | 1.36e-114 | 330 |
| Msa0609690 | AT5G56320.2 | 64.542 | 251 | 59 | 2 | 48 | 268 | 1 | 251 | 1.36e-114 | 330 |
| Msa0609690 | AT5G56320.3 | 64.542 | 251 | 59 | 2 | 48 | 268 | 1 | 251 | 4.15e-114 | 330 |
| Msa0609690 | AT2G40610.1 | 65.021 | 243 | 58 | 2 | 53 | 268 | 11 | 253 | 7.29e-112 | 323 |
| Msa0609690 | AT5G05290.1 | 61.176 | 255 | 70 | 3 | 43 | 268 | 1 | 255 | 2.12e-108 | 314 |
| Msa0609690 | AT2G39700.1 | 61.111 | 252 | 64 | 3 | 48 | 265 | 1 | 252 | 8.45e-104 | 302 |
| Msa0609690 | AT3G55500.1 | 58.301 | 259 | 79 | 3 | 38 | 268 | 1 | 258 | 1.40e-103 | 302 |
| Msa0609690 | AT2G37640.1 | 61.066 | 244 | 66 | 3 | 53 | 268 | 18 | 260 | 4.29e-102 | 298 |
| Msa0609690 | AT5G02260.1 | 58.103 | 253 | 76 | 3 | 43 | 265 | 1 | 253 | 6.69e-102 | 298 |
| Msa0609690 | AT1G69530.4 | 62.249 | 249 | 36 | 4 | 48 | 268 | 1 | 219 | 1.40e-101 | 295 |
| Msa0609690 | AT1G69530.5 | 63.333 | 240 | 50 | 5 | 48 | 259 | 1 | 230 | 4.87e-101 | 295 |
| Msa0609690 | AT3G29030.1 | 66.071 | 224 | 41 | 3 | 72 | 268 | 38 | 253 | 7.08e-100 | 292 |
| Msa0609690 | AT2G28950.1 | 58.039 | 255 | 73 | 3 | 48 | 268 | 1 | 255 | 1.81e-94 | 279 |
| Msa0609690 | AT1G20190.1 | 62.332 | 223 | 55 | 3 | 71 | 264 | 25 | 247 | 1.84e-94 | 278 |
| Msa0609690 | AT2G37640.2 | 60.577 | 208 | 54 | 2 | 89 | 268 | 28 | 235 | 4.33e-87 | 259 |
| Msa0609690 | AT4G01630.1 | 54.357 | 241 | 80 | 4 | 53 | 263 | 9 | 249 | 8.01e-87 | 259 |
| Msa0609690 | AT1G20190.2 | 64.205 | 176 | 62 | 1 | 90 | 264 | 13 | 188 | 4.13e-80 | 240 |
| Msa0609690 | AT5G39280.1 | 50.909 | 220 | 80 | 2 | 72 | 265 | 54 | 271 | 6.92e-78 | 237 |
| Msa0609690 | AT5G39300.1 | 50.455 | 220 | 81 | 2 | 72 | 265 | 55 | 272 | 5.28e-77 | 235 |
| Msa0609690 | AT5G39270.1 | 49.545 | 220 | 83 | 2 | 72 | 265 | 58 | 275 | 4.12e-73 | 225 |
| Msa0609690 | AT5G39290.1 | 48.636 | 220 | 85 | 2 | 72 | 265 | 58 | 275 | 2.61e-72 | 223 |
| Msa0609690 | AT1G12560.1 | 48.261 | 230 | 90 | 4 | 62 | 263 | 27 | 255 | 3.71e-68 | 212 |
| Msa0609690 | AT5G39310.1 | 47.748 | 222 | 87 | 3 | 71 | 265 | 89 | 308 | 7.02e-68 | 213 |
| Msa0609690 | AT3G03220.1 | 46.875 | 224 | 92 | 2 | 72 | 268 | 40 | 263 | 1.37e-67 | 211 |
| Msa0609690 | AT1G62980.1 | 46.281 | 242 | 98 | 6 | 53 | 263 | 10 | 250 | 1.10e-66 | 208 |
| Msa0609690 | AT3G15370.1 | 46.914 | 243 | 89 | 8 | 53 | 264 | 12 | 245 | 2.48e-64 | 202 |
| Msa0609690 | AT4G38210.1 | 42.520 | 254 | 112 | 5 | 45 | 268 | 5 | 254 | 1.61e-63 | 200 |
| Msa0609690 | AT5G39260.1 | 40.076 | 262 | 109 | 5 | 45 | 265 | 4 | 258 | 1.06e-58 | 188 |
| Msa0609690 | AT3G15370.2 | 41.758 | 273 | 89 | 9 | 53 | 264 | 12 | 275 | 7.09e-58 | 186 |
| Msa0609690 | AT4G28250.1 | 27.820 | 266 | 142 | 10 | 38 | 264 | 1 | 255 | 6.18e-19 | 84.3 |
| Msa0609690 | AT4G28250.2 | 27.170 | 265 | 139 | 10 | 38 | 264 | 1 | 249 | 1.40e-15 | 74.7 |
| Msa0609690 | AT2G20750.1 | 28.879 | 232 | 117 | 9 | 72 | 264 | 40 | 262 | 2.85e-15 | 74.3 |
| Msa0609690 | AT1G65680.1 | 28.017 | 232 | 116 | 10 | 72 | 263 | 47 | 267 | 3.99e-13 | 68.2 |
Find 106 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTATGCTGCTAGGGAAAA+TGG | 0.177523 | 4_2:-57117195 | Msa0609690:three_prime_UTR |
| AATGCACATGCCACCTTCTA+TGG | 0.202737 | 4_2:-57118221 | Msa0609690:CDS |
| CCCTTCAATTCATGGCTCTT+TGG | 0.243078 | 4_2:-57117122 | Msa0609690:three_prime_UTR |
| GCTCCAGCTGGATGGTCTTT+TGG | 0.250334 | 4_2:-57117357 | Msa0609690:CDS |
| TTGTGGTTGAACTACTAAAT+TGG | 0.259563 | 4_2:-57116999 | Msa0609690:three_prime_UTR |
| CACCCGCTATATTTAGTATC+AGG | 0.267813 | 4_2:-57116957 | Msa0609690:three_prime_UTR |
| CACCAACCACCTTGATTGTT+TGG | 0.269349 | 4_2:+57117829 | None:intergenic |
| TCCAGCTGGAGCAACATTAT+TGG | 0.273928 | 4_2:+57117368 | None:intergenic |
| TAAAATGGCCCTTCAATTCA+TGG | 0.300109 | 4_2:-57117130 | Msa0609690:three_prime_UTR |
| GTAGGTGGGGCTTGTGGATA+TGG | 0.300951 | 4_2:-57118030 | Msa0609690:intron |
| CTTTGGTTATTGTGGTGTTT+TGG | 0.301722 | 4_2:-57117105 | Msa0609690:three_prime_UTR |
| GGATATCTATGTCAAGAAAC+TGG | 0.302501 | 4_2:-57117476 | Msa0609690:CDS |
| GACCACAGATGGTGCCTTCC+TGG | 0.308171 | 4_2:-57117901 | Msa0609690:CDS |
| AGTATTTCTAAACTTGAAAC+TGG | 0.309026 | 4_2:+57117287 | None:intergenic |
| TTCCATACCCTTGACTATAA+AGG | 0.310459 | 4_2:+57118004 | None:intergenic |
| GGCTTACATTGGCTTGCTTT+TGG | 0.310735 | 4_2:-57118297 | Msa0609690:CDS |
| CAAGAAACTGGGGACAAAAT+TGG | 0.340071 | 4_2:-57117464 | Msa0609690:CDS |
| TTCTCCTCTGTTTATGCCTA+TGG | 0.366961 | 4_2:-57118257 | Msa0609690:CDS |
| TAAATTGGAGGAGGTGGAAA+TGG | 0.377719 | 4_2:-57116984 | Msa0609690:three_prime_UTR |
| TGGCTGGGTAAGGTATGTTT+TGG | 0.381554 | 4_2:-57116873 | Msa0609690:three_prime_UTR |
| TCCAATAATGTTGCTCCAGC+TGG | 0.392823 | 4_2:-57117369 | Msa0609690:CDS |
| CCCAGCCAAGGCTGATTACA+AGG | 0.393740 | 4_2:+57116888 | None:intergenic |
| ATCACCAACGTTGGTGGTGC+TGG | 0.415234 | 4_2:-57117540 | Msa0609690:CDS |
| TCCTTGTAATCAGCCTTGGC+TGG | 0.421343 | 4_2:-57116889 | Msa0609690:three_prime_UTR |
| CTCAAATCCTCTAGAGCATA+TGG | 0.422412 | 4_2:-57117317 | Msa0609690:exon |
| AACTACTAAATTGGAGGAGG+TGG | 0.430327 | 4_2:-57116990 | Msa0609690:three_prime_UTR |
| GTAGGAGAAAGGGAGGTATA+AGG | 0.433696 | 4_2:-57117602 | Msa0609690:CDS |
| CTAATCCTTGTAATCAGCCT+TGG | 0.437532 | 4_2:-57116893 | Msa0609690:three_prime_UTR |
| TAGGGTGTCATGTAGGAGAA+AGG | 0.438680 | 4_2:-57117613 | Msa0609690:CDS |
| TATGGAGGAAGTGATGCTTC+AGG | 0.438776 | 4_2:-57118203 | Msa0609690:CDS |
| AGCATCACTTCCTCCATAGA+AGG | 0.449496 | 4_2:+57118208 | None:intergenic |
| GGTATAAGGTTCACTATCAA+TGG | 0.450863 | 4_2:-57117588 | Msa0609690:CDS |
| TTGTTTGGTAAGGCATTGTT+TGG | 0.454457 | 4_2:+57117844 | None:intergenic |
| AGTATGCTGCTAGGGAAAAT+GGG | 0.460706 | 4_2:-57117194 | Msa0609690:three_prime_UTR |
| TCATGGCTCTTTGGTTATTG+TGG | 0.473038 | 4_2:-57117113 | Msa0609690:three_prime_UTR |
| ACCAAAGAGCCATGAATTGA+AGG | 0.477746 | 4_2:+57117121 | None:intergenic |
| TAATCAGCCTTGGCTGGGTA+AGG | 0.486468 | 4_2:-57116883 | Msa0609690:three_prime_UTR |
| TAGTACCTCAATAGTATACT+AGG | 0.491481 | 4_2:-57117226 | Msa0609690:three_prime_UTR |
| AGGGTGTCATGTAGGAGAAA+GGG | 0.494086 | 4_2:-57117612 | Msa0609690:CDS |
| GAAATTACTTTGATAGTCAA+AGG | 0.505026 | 4_2:+57118448 | None:intergenic |
| TGGTTGAACTACTAAATTGG+AGG | 0.505389 | 4_2:-57116996 | Msa0609690:three_prime_UTR |
| CAGAGCAACAATTATCTCAA+TGG | 0.508519 | 4_2:-57117441 | Msa0609690:CDS |
| TCTGTTTATGCCTATGGTGG+AGG | 0.513461 | 4_2:-57118251 | Msa0609690:CDS |
| CGTATTGCTCAATACAAAGC+TGG | 0.513556 | 4_2:-57117760 | Msa0609690:CDS |
| AGTGATGCTTCAGGAACAAT+GGG | 0.514794 | 4_2:-57118194 | Msa0609690:intron |
| TCCTCTGTTTATGCCTATGG+TGG | 0.517540 | 4_2:-57118254 | Msa0609690:CDS |
| AATATCCTAGTATACTATTG+AGG | 0.517752 | 4_2:+57117221 | None:intergenic |
| ACCACCTTGATTGTTTGGTA+AGG | 0.522218 | 4_2:+57117834 | None:intergenic |
| GTTCTTATCACCAACGTTGG+TGG | 0.523355 | 4_2:-57117546 | Msa0609690:CDS |
| GTTTGGTGGACAGAAATTAG+TGG | 0.526223 | 4_2:+57117861 | None:intergenic |
| GTTGAGCAAGATCAAAATGT+TGG | 0.527634 | 4_2:+57117794 | None:intergenic |
| TTTAAGGTTACAACTAGTGA+TGG | 0.529102 | 4_2:-57117405 | Msa0609690:CDS |
| ACCTACCTTCTAAAATCTAC+AGG | 0.533353 | 4_2:+57117730 | None:intergenic |
| AAACAGGAAATGGCTTACAT+TGG | 0.533906 | 4_2:-57118308 | Msa0609690:intron |
| CAACGTTGGTGATAAGAACT+AGG | 0.542775 | 4_2:+57117550 | None:intergenic |
| TACATGCTGCATCCATCAAA+GGG | 0.543754 | 4_2:-57117512 | Msa0609690:CDS |
| TATGGTAACCTTTATAGTCA+AGG | 0.546440 | 4_2:-57118012 | Msa0609690:CDS |
| TACTGGTTAGAGTAGAGCTA+TGG | 0.547166 | 4_2:+57118769 | None:intergenic |
| GATCAAAATGTTGGAGAGGA+GGG | 0.550651 | 4_2:+57117803 | None:intergenic |
| TTTGGTAAGGCATTGTTTGG+TGG | 0.554613 | 4_2:+57117847 | None:intergenic |
| AAGTGATGCTTCAGGAACAA+TGG | 0.556486 | 4_2:-57118195 | Msa0609690:CDS |
| ATATTAAATAGTATGCTGCT+AGG | 0.557428 | 4_2:-57117203 | Msa0609690:three_prime_UTR |
| TATTAAATAGTATGCTGCTA+GGG | 0.560427 | 4_2:-57117202 | Msa0609690:three_prime_UTR |
| CTAATATAGATGTTAGCAGA+AGG | 0.562363 | 4_2:-57117041 | Msa0609690:three_prime_UTR |
| CCAAAGAGCCATGAATTGAA+GGG | 0.563412 | 4_2:+57117122 | None:intergenic |
| TGTGAAGTGAAGAGTGTTGG+TGG | 0.564670 | 4_2:+57118514 | None:intergenic |
| CCTTGTAATCAGCCTTGGCT+GGG | 0.566017 | 4_2:-57116888 | Msa0609690:three_prime_UTR |
| GTACATGCTGCATCCATCAA+AGG | 0.567778 | 4_2:-57117513 | Msa0609690:CDS |
| TGACCAAAAGACCATCCAGC+TGG | 0.568697 | 4_2:+57117354 | None:intergenic |
| GATATCTATGTCAAGAAACT+GGG | 0.570919 | 4_2:-57117475 | Msa0609690:CDS |
| ACCCGCTATATTTAGTATCA+GGG | 0.578040 | 4_2:-57116956 | Msa0609690:three_prime_UTR |
| TTTATGCCTATGGTGGAGGA+TGG | 0.581237 | 4_2:-57118247 | Msa0609690:CDS |
| AGATCAAAATGTTGGAGAGG+AGG | 0.586254 | 4_2:+57117802 | None:intergenic |
| AATTTGACCATATGCTCTAG+AGG | 0.586262 | 4_2:+57117310 | None:intergenic |
| AACCAGGAAGGCACCATCTG+TGG | 0.587057 | 4_2:+57117899 | None:intergenic |
| ATGGTAACCTTTATAGTCAA+GGG | 0.589746 | 4_2:-57118011 | Msa0609690:intron |
| ATAATGTTGCTCCAGCTGGA+TGG | 0.590574 | 4_2:-57117365 | Msa0609690:CDS |
| GTGCCTTCCTGGTTCCATTG+TGG | 0.591922 | 4_2:-57117890 | Msa0609690:CDS |
| ACCCTGATACTAAATATAGC+GGG | 0.595705 | 4_2:+57116955 | None:intergenic |
| TACCAAACAATCAAGGTGGT+TGG | 0.598522 | 4_2:-57117831 | Msa0609690:CDS |
| ATTAGTCCATCCTCCACCAT+AGG | 0.598598 | 4_2:+57118241 | None:intergenic |
| GCAGTGACCACAATGGAACC+AGG | 0.602351 | 4_2:+57117883 | None:intergenic |
| GATGTTTGTTAGCGTTAGAG+CGG | 0.607838 | 4_2:+57118791 | None:intergenic |
| GTGTCATGTAGGAGAAAGGG+AGG | 0.610710 | 4_2:-57117609 | Msa0609690:CDS |
| AATGCCTTACCAAACAATCA+AGG | 0.612141 | 4_2:-57117838 | Msa0609690:CDS |
| TCTATATTAGCAGAGCAGAA+TGG | 0.615805 | 4_2:+57117054 | None:intergenic |
| ATTTGTGTAGGGTGTCATGT+AGG | 0.618652 | 4_2:-57117620 | Msa0609690:intron |
| GAGGATTTGAGCACCAGTGT+AGG | 0.625146 | 4_2:+57117329 | None:intergenic |
| ATGTGTGAAGTGAAGAGTGT+TGG | 0.627130 | 4_2:+57118511 | None:intergenic |
| AAACATACCTTACCCAGCCA+AGG | 0.637920 | 4_2:+57116876 | None:intergenic |
| TTGAACTACTAAATTGGAGG+AGG | 0.638601 | 4_2:-57116993 | Msa0609690:three_prime_UTR |
| TAATATAGATGTTAGCAGAA+GGG | 0.640329 | 4_2:-57117040 | Msa0609690:three_prime_UTR |
| GCAAGATCAAAATGTTGGAG+AGG | 0.641783 | 4_2:+57117799 | None:intergenic |
| ATCACTTCCTCCATAGAAGG+TGG | 0.643748 | 4_2:+57118211 | None:intergenic |
| GCACATGCCACCTTCTATGG+AGG | 0.644186 | 4_2:-57118218 | Msa0609690:CDS |
| GTGAAGTGAAGAGTGTTGGT+GGG | 0.657415 | 4_2:+57118515 | None:intergenic |
| CTAGTTCTTATCACCAACGT+TGG | 0.662164 | 4_2:-57117549 | Msa0609690:CDS |
| TACCCTGATACTAAATATAG+CGG | 0.667568 | 4_2:+57116954 | None:intergenic |
| TGACCACAATGGAACCAGGA+AGG | 0.676921 | 4_2:+57117887 | None:intergenic |
| CTGATACTAAATATAGCGGG+TGG | 0.682560 | 4_2:+57116958 | None:intergenic |
| ATCTCCAGCACCACCAACGT+TGG | 0.688696 | 4_2:+57117536 | None:intergenic |
| ATTAGTGGCAGTGACCACAA+TGG | 0.700766 | 4_2:+57117876 | None:intergenic |
| ATATCTATGTCAAGAAACTG+GGG | 0.706710 | 4_2:-57117474 | Msa0609690:CDS |
| GGTGTGCTAATGACCACAGA+TGG | 0.712272 | 4_2:-57117912 | Msa0609690:CDS |
| GCCTTACCAAACAATCAAGG+TGG | 0.713350 | 4_2:-57117835 | Msa0609690:CDS |
| TCCACCATAGGCATAAACAG+AGG | 0.739179 | 4_2:+57118253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAGAAAATAAATCATTT+TGG | + | chr4_2:57118264-57118283 | None:intergenic | 10.0% |
| !!! | TCATTTTGAAATAATTTTTT+TGG | - | chr4_2:57118505-57118524 | Msa0609690:CDS | 10.0% |
| !! | AAATAAATAAGCAAAAATAT+TGG | - | chr4_2:57119023-57119042 | Msa0609690:intron | 10.0% |
| !!! | ATTTTCAATTTTTATGTATT+TGG | - | chr4_2:57120500-57120519 | Msa0609690:intron | 10.0% |
| !!! | AAATTCTTGCTATAATTTTT+TGG | + | chr4_2:57116824-57116843 | None:intergenic | 15.0% |
| !! | AATATTTAAACCGTATAAAT+AGG | + | chr4_2:57117282-57117301 | None:intergenic | 15.0% |
| !! | TGAAAAAAATCTTAAAAAGT+GGG | + | chr4_2:57117857-57117876 | None:intergenic | 15.0% |
| !! | ATGAAAAAAATCTTAAAAAG+TGG | + | chr4_2:57117858-57117877 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr4_2:57118381-57118400 | None:intergenic | 15.0% |
| !! | AAACTAACTAATAGTTAATA+AGG | + | chr4_2:57118390-57118409 | None:intergenic | 15.0% |
| !! | TTATCAAATTTGAAAATAGA+AGG | - | chr4_2:57118654-57118673 | Msa0609690:intron | 15.0% |
| !! | AAATGAACATTAATTATTTG+AGG | + | chr4_2:57119077-57119096 | None:intergenic | 15.0% |
| !! | CATTTCAAATTTCAAATAAT+TGG | + | chr4_2:57119495-57119514 | None:intergenic | 15.0% |
| !!! | ATTATAGCAAGAATTTTCAA+CGG | - | chr4_2:57116828-57116847 | Msa0609690:three_prime_UTR | 20.0% |
| !!! | ATTTTAAAGCAAATTTGTGT+TGG | - | chr4_2:57117095-57117114 | Msa0609690:three_prime_UTR | 20.0% |
| !! | CGACTTAAAAAGATAAAAAT+TGG | - | chr4_2:57117247-57117266 | Msa0609690:three_prime_UTR | 20.0% |
| !!! | TTTTATATCACATAAAACAC+CGG | + | chr4_2:57117391-57117410 | None:intergenic | 20.0% |
| !!! | TCAATTTTTAAAATTAGAGC+AGG | + | chr4_2:57117586-57117605 | None:intergenic | 20.0% |
| !!! | AAAGAGACTTTTTTTTTTGA+AGG | - | chr4_2:57117669-57117688 | Msa0609690:intron | 20.0% |
| !! | AAGACTTATAAAAATTGACA+TGG | - | chr4_2:57117756-57117775 | Msa0609690:CDS | 20.0% |
| !! | GTAAGTTTGAAAATTATGAA+CGG | - | chr4_2:57117905-57117924 | Msa0609690:CDS | 20.0% |
| !! | GTCATTAAAATAGATAATCA+TGG | + | chr4_2:57118015-57118034 | None:intergenic | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | + | chr4_2:57118084-57118103 | None:intergenic | 20.0% |
| !!! | TAAATCATTTTGGATCTTTT+AGG | + | chr4_2:57118254-57118273 | None:intergenic | 20.0% |
| !! | AAGAAAAGTTATTATTGCAT+TGG | - | chr4_2:57118466-57118485 | Msa0609690:CDS | 20.0% |
| !! | TATGAAATGGTGAAAATAAA+GGG | - | chr4_2:57118685-57118704 | Msa0609690:intron | 20.0% |
| !! | AAATAAGCAAAAATATTGGA+TGG | - | chr4_2:57119027-57119046 | Msa0609690:intron | 20.0% |
| !! | CAAATTTCAAATAATTGGTT+TGG | + | chr4_2:57119490-57119509 | None:intergenic | 20.0% |
| !!! | CACATTTTAGTACATAAATT+TGG | + | chr4_2:57119806-57119825 | None:intergenic | 20.0% |
| !!! | TAGTGGTTTTTATTGAAAAA+TGG | + | chr4_2:57120012-57120031 | None:intergenic | 20.0% |
| !!! | ACTAATTTGTGTTTTTATTG+TGG | - | chr4_2:57120528-57120547 | Msa0609690:intron | 20.0% |
| !!! | ACTTTTTCTTTATATCTTTG+TGG | - | chr4_2:57121158-57121177 | Msa0609690:intron | 20.0% |
| !!! | ATCCTTTTAGTTTTTCATTT+TGG | - | chr4_2:57121245-57121264 | Msa0609690:intron | 20.0% |
| !!! | TCCTTTTAGTTTTTCATTTT+GGG | - | chr4_2:57121246-57121265 | Msa0609690:intron | 20.0% |
| ! | TAATGCCTAGATAAAATTGA+AGG | - | chr4_2:57117040-57117059 | Msa0609690:three_prime_UTR | 25.0% |
| ! | TCAATTTGAATAGACTGATT+TGG | - | chr4_2:57117177-57117196 | Msa0609690:three_prime_UTR | 25.0% |
| ! | CATTGTTTATGTTATGGATT+CGG | + | chr4_2:57117305-57117324 | None:intergenic | 25.0% |
| ! | TTTCTCCATTGTTTATGTTA+TGG | + | chr4_2:57117311-57117330 | None:intergenic | 25.0% |
| ! | TTTATATCACATAAAACACC+GGG | + | chr4_2:57117390-57117409 | None:intergenic | 25.0% |
| !!! | TTTTTTATCCGACAATTGTA+AGG | - | chr4_2:57117433-57117452 | Msa0609690:CDS | 25.0% |
| ! | TCTCTCAAAAAAAAGTGAAA+AGG | - | chr4_2:57117642-57117661 | Msa0609690:intron | 25.0% |
| ! | CAAAGACTTATAAATATGTG+AGG | - | chr4_2:57117719-57117738 | Msa0609690:intron | 25.0% |
| ! | GACGATTAAAAGAAAAAGAA+TGG | - | chr4_2:57118347-57118366 | Msa0609690:intron | 25.0% |
| !!! | GACACTTATTTTAAAACAGA+AGG | - | chr4_2:57118535-57118554 | Msa0609690:intron | 25.0% |
| ! | CTATGAAATGGTGAAAATAA+AGG | - | chr4_2:57118684-57118703 | Msa0609690:intron | 25.0% |
| ! | TTGAATTGAATTCAACCTAA+AGG | - | chr4_2:57118936-57118955 | Msa0609690:intron | 25.0% |
| ! | CTTATTTATTTGAGAGTAGA+CGG | + | chr4_2:57119014-57119033 | None:intergenic | 25.0% |
| ! | TATGTAGTTGCATAAAATAC+TGG | + | chr4_2:57119182-57119201 | None:intergenic | 25.0% |
| ! | TCTGTCAATGTTTATCAATA+TGG | - | chr4_2:57119301-57119320 | Msa0609690:intron | 25.0% |
| ! | CAATATGGATACTTATTTAG+AGG | - | chr4_2:57119316-57119335 | Msa0609690:intron | 25.0% |
| ! | GTTAGTTAAAATTGTTAGAG+TGG | - | chr4_2:57119579-57119598 | Msa0609690:intron | 25.0% |
| ! | TTCAAGGTCTATAAATTAAG+TGG | - | chr4_2:57119632-57119651 | Msa0609690:intron | 25.0% |
| !! | GAAATTACTTTGATAGTCAA+AGG | + | chr4_2:57119729-57119748 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTACATTGAAAC+AGG | - | chr4_2:57119850-57119869 | Msa0609690:intron | 25.0% |
| !! | CAAAACTTTATTTCAAGTAG+TGG | + | chr4_2:57120029-57120048 | None:intergenic | 25.0% |
| !! | AGTATTTCTAAACTTGAAAC+TGG | + | chr4_2:57120890-57120909 | None:intergenic | 25.0% |
| ! | AATATCCTAGTATACTATTG+AGG | + | chr4_2:57120956-57120975 | None:intergenic | 25.0% |
| ! | ATATTAAATAGTATGCTGCT+AGG | - | chr4_2:57120971-57120990 | Msa0609690:intron | 25.0% |
| ! | TATTAAATAGTATGCTGCTA+GGG | - | chr4_2:57120972-57120991 | Msa0609690:intron | 25.0% |
| !!! | TTTGTTTTTGGTTGTTTTAG+AGG | - | chr4_2:57121003-57121022 | Msa0609690:intron | 25.0% |
| !!! | TTTTAAAATATGCCCTTCAT+TGG | + | chr4_2:57121029-57121048 | None:intergenic | 25.0% |
| !!! | ATGAAGGGCATATTTTAAAA+TGG | - | chr4_2:57121029-57121048 | Msa0609690:intron | 25.0% |
| ! | TAATATAGATGTTAGCAGAA+GGG | - | chr4_2:57121134-57121153 | Msa0609690:intron | 25.0% |
| ! | TCCCAAAATGAAAAACTAAA+AGG | + | chr4_2:57121250-57121269 | None:intergenic | 25.0% |
| ! | CATGTCCTTCAATTTTATCT+AGG | + | chr4_2:57117048-57117067 | None:intergenic | 30.0% |
| CTAGATAAAATTGAAGGACA+TGG | - | chr4_2:57117046-57117065 | Msa0609690:three_prime_UTR | 30.0% | |
| GAGATCATGTCCTATTTATA+CGG | - | chr4_2:57117269-57117288 | Msa0609690:three_prime_UTR | 30.0% | |
| CGAATCCATAACATAAACAA+TGG | - | chr4_2:57117303-57117322 | Msa0609690:three_prime_UTR | 30.0% | |
| ATCATCAAGTTCAAGCTTAA+TGG | - | chr4_2:57117346-57117365 | Msa0609690:CDS | 30.0% | |
| TTGAAATAAAAATGAACCCC+CGG | - | chr4_2:57117369-57117388 | Msa0609690:CDS | 30.0% | |
| TTATATCACATAAAACACCG+GGG | + | chr4_2:57117389-57117408 | None:intergenic | 30.0% | |
| ATCTTTGACCTTACAATTGT+CGG | + | chr4_2:57117444-57117463 | None:intergenic | 30.0% | |
| TATAATCACTAGCGAAAAGA+CGG | - | chr4_2:57117878-57117897 | Msa0609690:CDS | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+TGG | + | chr4_2:57118298-57118317 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr4_2:57118299-57118318 | Msa0609690:CDS | 30.0% |
| TTAAAACAGAAGGAGTAGTA+TGG | - | chr4_2:57118545-57118564 | Msa0609690:intron | 30.0% | |
| GAAGGATGAAATCTATGAAA+TGG | - | chr4_2:57118672-57118691 | Msa0609690:intron | 30.0% | |
| AAAATCTCCAAAATCCATGT+GGG | + | chr4_2:57118811-57118830 | None:intergenic | 30.0% | |
| TTTATGCAACACACATCTAA+AGG | - | chr4_2:57118887-57118906 | Msa0609690:intron | 30.0% | |
| TCAATTCAATTCAATGTGAG+AGG | + | chr4_2:57118925-57118944 | None:intergenic | 30.0% | |
| AACTTGTCTCATAAAATTCG+AGG | + | chr4_2:57119213-57119232 | None:intergenic | 30.0% | |
| AAATATACAGGTTAGAGTAG+AGG | + | chr4_2:57119531-57119550 | None:intergenic | 30.0% | |
| ! | CTACTCTAACCTGTATATTT+TGG | - | chr4_2:57119531-57119550 | Msa0609690:intron | 30.0% |
| TTGTACATTGAAACAGGAAA+TGG | - | chr4_2:57119856-57119875 | Msa0609690:intron | 30.0% | |
| AACAACAAAGTCAGTGAAAT+GGG | + | chr4_2:57120118-57120137 | None:intergenic | 30.0% | |
| AAACAACAAAGTCAGTGAAA+TGG | + | chr4_2:57120119-57120138 | None:intergenic | 30.0% | |
| !!! | GACTTTGTTGTTTTTTGTGT+AGG | - | chr4_2:57120126-57120145 | Msa0609690:intron | 30.0% |
| !!! | TTTGTTGTTTTTTGTGTAGG+TGG | - | chr4_2:57120129-57120148 | Msa0609690:intron | 30.0% |
| !!! | TTGTTGTTTTTTGTGTAGGT+GGG | - | chr4_2:57120130-57120149 | Msa0609690:intron | 30.0% |
| TATGGTAACCTTTATAGTCA+AGG | - | chr4_2:57120162-57120181 | Msa0609690:intron | 30.0% | |
| ATGGTAACCTTTATAGTCAA+GGG | - | chr4_2:57120163-57120182 | Msa0609690:intron | 30.0% | |
| ! | TTGTTCCTGTAGATTTTAGA+AGG | - | chr4_2:57120439-57120458 | Msa0609690:intron | 30.0% |
| TTATTGTGGTGAATTTGTGT+AGG | - | chr4_2:57120542-57120561 | Msa0609690:intron | 30.0% | |
| TATTGTGGTGAATTTGTGTA+GGG | - | chr4_2:57120543-57120562 | Msa0609690:intron | 30.0% | |
| GATATCTATGTCAAGAAACT+GGG | - | chr4_2:57120699-57120718 | Msa0609690:intron | 30.0% | |
| ATATCTATGTCAAGAAACTG+GGG | - | chr4_2:57120700-57120719 | Msa0609690:intron | 30.0% | |
| ! | TGGTCAAAGTTTGTCTTTTA+AGG | - | chr4_2:57120753-57120772 | Msa0609690:intron | 30.0% |
| ! | TTTAAGGTTACAACTAGTGA+TGG | - | chr4_2:57120769-57120788 | Msa0609690:intron | 30.0% |
| TAGTACCTCAATAGTATACT+AGG | - | chr4_2:57120948-57120967 | Msa0609690:intron | 30.0% | |
| CTAATATAGATGTTAGCAGA+AGG | - | chr4_2:57121133-57121152 | Msa0609690:intron | 30.0% | |
| TTGTGGTTGAACTACTAAAT+TGG | - | chr4_2:57121175-57121194 | Msa0609690:intron | 30.0% | |
| TACCCTGATACTAAATATAG+CGG | + | chr4_2:57121223-57121242 | None:intergenic | 30.0% | |
| !!! | AAGGTATGTTTTGGTTGTAT+TGG | - | chr4_2:57121310-57121329 | Msa0609690:intron | 30.0% |
| !!! | AGGTATGTTTTGGTTGTATT+GGG | - | chr4_2:57121311-57121330 | Msa0609690:intron | 30.0% |
| TTCCAATACATAGAAGAGAC+CGG | - | chr4_2:57116958-57116977 | Msa0609690:three_prime_UTR | 35.0% | |
| TTACAAACATCATAGGTTCG+CGG | + | chr4_2:57117023-57117042 | None:intergenic | 35.0% | |
| CTAGGCATTACAAACATCAT+AGG | + | chr4_2:57117030-57117049 | None:intergenic | 35.0% | |
| AGAAACACATTCTCTATCTC+AGG | + | chr4_2:57117135-57117154 | None:intergenic | 35.0% | |
| ! | TCTGCTCAAAGTTTCACTTT+TGG | - | chr4_2:57117152-57117171 | Msa0609690:three_prime_UTR | 35.0% |
| TATATCACATAAAACACCGG+GGG | + | chr4_2:57117388-57117407 | None:intergenic | 35.0% | |
| ATAATCACTAGCGAAAAGAC+GGG | - | chr4_2:57117879-57117898 | Msa0609690:CDS | 35.0% | |
| !!! | GACACTCATTTTGAAATGGA+GGG | + | chr4_2:57118294-57118313 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr4_2:57118429-57118448 | Msa0609690:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr4_2:57118433-57118452 | Msa0609690:intron | 35.0% |
| GAAATGGTGAAAATAAAGGG+CGG | - | chr4_2:57118688-57118707 | Msa0609690:intron | 35.0% | |
| AAATGGTGAAAATAAAGGGC+GGG | - | chr4_2:57118689-57118708 | Msa0609690:intron | 35.0% | |
| GAATAAGAAGGAGTAGCAAA+TGG | - | chr4_2:57118711-57118730 | Msa0609690:intron | 35.0% | |
| !! | CAAATGGTTTGTTTGATGCT+TGG | - | chr4_2:57118727-57118746 | Msa0609690:intron | 35.0% |
| AAATCTCCAAAATCCATGTG+GGG | + | chr4_2:57118810-57118829 | None:intergenic | 35.0% | |
| GAAAATCTCCAAAATCCATG+TGG | + | chr4_2:57118812-57118831 | None:intergenic | 35.0% | |
| !! | GTTGCATAAAAGCTGTTTTG+TGG | + | chr4_2:57118877-57118896 | None:intergenic | 35.0% |
| AATTCAACCTAAAGGTCATG+TGG | - | chr4_2:57118944-57118963 | Msa0609690:intron | 35.0% | |
| ATTCAACCTAAAGGTCATGT+GGG | - | chr4_2:57118945-57118964 | Msa0609690:intron | 35.0% | |
| TTCAAAATCGCACACTTTAC+TGG | + | chr4_2:57119425-57119444 | None:intergenic | 35.0% | |
| !!! | AACCTGTATATTTTGGTCCA+AGG | - | chr4_2:57119538-57119557 | Msa0609690:intron | 35.0% |
| AACCTTGGACCAAAATATAC+AGG | + | chr4_2:57119543-57119562 | None:intergenic | 35.0% | |
| ! | CTTTTCAACTGTTTGAACCT+TGG | + | chr4_2:57119558-57119577 | None:intergenic | 35.0% |
| TTATAGACCTTGAAGAAGAG+TGG | + | chr4_2:57119626-57119645 | None:intergenic | 35.0% | |
| ATGAAGGAGCAATGTGAAAA+AGG | + | chr4_2:57119751-57119770 | None:intergenic | 35.0% | |
| GAACTTTAGCATTCAGATGA+AGG | + | chr4_2:57119767-57119786 | None:intergenic | 35.0% | |
| AAACAGGAAATGGCTTACAT+TGG | - | chr4_2:57119866-57119885 | Msa0609690:intron | 35.0% | |
| !!! | TGTTGTTTTTTGTGTAGGTG+GGG | - | chr4_2:57120131-57120150 | Msa0609690:intron | 35.0% |
| AACCTTTATAGTCAAGGGTA+TGG | - | chr4_2:57120168-57120187 | Msa0609690:intron | 35.0% | |
| TTCCATACCCTTGACTATAA+AGG | + | chr4_2:57120173-57120192 | None:intergenic | 35.0% | |
| ! | AGTACAGCACTTTTCAACAA+TGG | - | chr4_2:57120210-57120229 | Msa0609690:intron | 35.0% |
| !! | TTGTTTGGTAAGGCATTGTT+TGG | + | chr4_2:57120333-57120352 | None:intergenic | 35.0% |
| AATGCCTTACCAAACAATCA+AGG | - | chr4_2:57120336-57120355 | Msa0609690:intron | 35.0% | |
| GTTGAGCAAGATCAAAATGT+TGG | + | chr4_2:57120383-57120402 | None:intergenic | 35.0% | |
| TGAGCAATACGAAGAAAAAC+AGG | + | chr4_2:57120405-57120424 | None:intergenic | 35.0% | |
| !! | TCCTGTAGATTTTAGAAGGT+AGG | - | chr4_2:57120443-57120462 | Msa0609690:intron | 35.0% |
| !! | ACCTACCTTCTAAAATCTAC+AGG | + | chr4_2:57120447-57120466 | None:intergenic | 35.0% |
| GGTATAAGGTTCACTATCAA+TGG | - | chr4_2:57120586-57120605 | Msa0609690:intron | 35.0% | |
| GGATATCTATGTCAAGAAAC+TGG | - | chr4_2:57120698-57120717 | Msa0609690:intron | 35.0% | |
| CAGAGCAACAATTATCTCAA+TGG | - | chr4_2:57120733-57120752 | Msa0609690:intron | 35.0% | |
| AATTTGACCATATGCTCTAG+AGG | + | chr4_2:57120867-57120886 | None:intergenic | 35.0% | |
| !! | AGGGAAAATGGGTTTGTTTT+TGG | - | chr4_2:57120991-57121010 | Msa0609690:intron | 35.0% |
| !!! | TTGTTTTAGAGGCCAATGAA+GGG | - | chr4_2:57121014-57121033 | Msa0609690:intron | 35.0% |
| TAAAATGGCCCTTCAATTCA+TGG | - | chr4_2:57121044-57121063 | Msa0609690:intron | 35.0% | |
| ! | CTTTGGTTATTGTGGTGTTT+TGG | - | chr4_2:57121069-57121088 | Msa0609690:intron | 35.0% |
| TCTATATTAGCAGAGCAGAA+TGG | + | chr4_2:57121123-57121142 | None:intergenic | 35.0% | |
| TGGTTGAACTACTAAATTGG+AGG | - | chr4_2:57121178-57121197 | Msa0609690:intron | 35.0% | |
| TTGAACTACTAAATTGGAGG+AGG | - | chr4_2:57121181-57121200 | Msa0609690:intron | 35.0% | |
| ACCCGCTATATTTAGTATCA+GGG | - | chr4_2:57121218-57121237 | Msa0609690:intron | 35.0% | |
| ACCCTGATACTAAATATAGC+GGG | + | chr4_2:57121222-57121241 | None:intergenic | 35.0% | |
| !!! | GGTATGTTTTGGTTGTATTG+GGG | - | chr4_2:57121312-57121331 | Msa0609690:intron | 35.0% |
| ACACGCACAAAGAAGTGAAA+AGG | - | chr4_2:57117618-57117637 | Msa0609690:intron | 40.0% | |
| !!! | CGACACTCATTTTGAAATGG+AGG | + | chr4_2:57118295-57118314 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr4_2:57118432-57118451 | Msa0609690:intron | 40.0% |
| AATAAAGGGCGGGAATAAGA+AGG | - | chr4_2:57118699-57118718 | Msa0609690:intron | 40.0% | |
| !! | TTCTGGTTCAGTGGTAACTT+GGG | + | chr4_2:57118840-57118859 | None:intergenic | 40.0% |
| ! | GTTTTGTGGCAGAAAATGTG+TGG | + | chr4_2:57118863-57118882 | None:intergenic | 40.0% |
| TGCAACACACATCTAAAGGA+AGG | - | chr4_2:57118891-57118910 | Msa0609690:intron | 40.0% | |
| GTGGGATTCAGTAGATTTCA+CGG | - | chr4_2:57118963-57118982 | Msa0609690:intron | 40.0% | |
| ! | GATGTTTGTTAGCGTTAGAG+CGG | + | chr4_2:57119386-57119405 | None:intergenic | 40.0% |
| ! | TACTGGTTAGAGTAGAGCTA+TGG | + | chr4_2:57119408-57119427 | None:intergenic | 40.0% |
| TATACAGGTTAGAGTAGAGG+TGG | + | chr4_2:57119528-57119547 | None:intergenic | 40.0% | |
| ACCTTGAAGAAGAGTGGTTT+GGG | + | chr4_2:57119620-57119639 | None:intergenic | 40.0% | |
| ! | ATGTGTGAAGTGAAGAGTGT+TGG | + | chr4_2:57119666-57119685 | None:intergenic | 40.0% |
| TTCTCCTCTGTTTATGCCTA+TGG | - | chr4_2:57119917-57119936 | Msa0609690:intron | 40.0% | |
| AAGTGATGCTTCAGGAACAA+TGG | - | chr4_2:57119979-57119998 | Msa0609690:intron | 40.0% | |
| AGTGATGCTTCAGGAACAAT+GGG | - | chr4_2:57119980-57119999 | Msa0609690:intron | 40.0% | |
| !! | GAAAAGTGCTGTACTCAAAG+CGG | + | chr4_2:57120205-57120224 | None:intergenic | 40.0% |
| TTCAACAATGGCTTAAGCTG+TGG | - | chr4_2:57120222-57120241 | Msa0609690:intron | 40.0% | |
| ! | GTGGCTCTTGCTATGAAATT+AGG | - | chr4_2:57120241-57120260 | Msa0609690:intron | 40.0% |
| ! | GTTTGGTGGACAGAAATTAG+TGG | + | chr4_2:57120316-57120335 | None:intergenic | 40.0% |
| !! | TTTGGTAAGGCATTGTTTGG+TGG | + | chr4_2:57120330-57120349 | None:intergenic | 40.0% |
| ACCACCTTGATTGTTTGGTA+AGG | + | chr4_2:57120343-57120362 | None:intergenic | 40.0% | |
| TACCAAACAATCAAGGTGGT+TGG | - | chr4_2:57120343-57120362 | Msa0609690:intron | 40.0% | |
| GATCAAAATGTTGGAGAGGA+GGG | + | chr4_2:57120374-57120393 | None:intergenic | 40.0% | |
| AGATCAAAATGTTGGAGAGG+AGG | + | chr4_2:57120375-57120394 | None:intergenic | 40.0% | |
| GCAAGATCAAAATGTTGGAG+AGG | + | chr4_2:57120378-57120397 | None:intergenic | 40.0% | |
| CGTATTGCTCAATACAAAGC+TGG | - | chr4_2:57120414-57120433 | Msa0609690:intron | 40.0% | |
| ! | ATTTGTGTAGGGTGTCATGT+AGG | - | chr4_2:57120554-57120573 | Msa0609690:intron | 40.0% |
| !! | CAACGTTGGTGATAAGAACT+AGG | + | chr4_2:57120627-57120646 | None:intergenic | 40.0% |
| ! | CTAGTTCTTATCACCAACGT+TGG | - | chr4_2:57120625-57120644 | Msa0609690:intron | 40.0% |
| TACATGCTGCATCCATCAAA+GGG | - | chr4_2:57120662-57120681 | Msa0609690:intron | 40.0% | |
| TCCATCAAAGGGTCAAAAAC+TGG | - | chr4_2:57120673-57120692 | Msa0609690:intron | 40.0% | |
| ! | ACCAGTTTTTGACCCTTTGA+TGG | + | chr4_2:57120677-57120696 | None:intergenic | 40.0% |
| TCAAAGGGTCAAAAACTGGT+TGG | - | chr4_2:57120677-57120696 | Msa0609690:intron | 40.0% | |
| CAAGAAACTGGGGACAAAAT+TGG | - | chr4_2:57120710-57120729 | Msa0609690:intron | 40.0% | |
| ! | TCTTTTGGTCAAACCTACAC+TGG | - | chr4_2:57120832-57120851 | Msa0609690:intron | 40.0% |
| !! | CTCAAATCCTCTAGAGCATA+TGG | - | chr4_2:57120857-57120876 | Msa0609690:intron | 40.0% |
| TAGTATGCTGCTAGGGAAAA+TGG | - | chr4_2:57120979-57120998 | Msa0609690:intron | 40.0% | |
| AGTATGCTGCTAGGGAAAAT+GGG | - | chr4_2:57120980-57120999 | Msa0609690:intron | 40.0% | |
| !!! | GTTGTTTTAGAGGCCAATGA+AGG | - | chr4_2:57121013-57121032 | Msa0609690:intron | 40.0% |
| CCAAAGAGCCATGAATTGAA+GGG | + | chr4_2:57121055-57121074 | None:intergenic | 40.0% | |
| ACCAAAGAGCCATGAATTGA+AGG | + | chr4_2:57121056-57121075 | None:intergenic | 40.0% | |
| TCATGGCTCTTTGGTTATTG+TGG | - | chr4_2:57121061-57121080 | Msa0609690:intron | 40.0% | |
| AACTACTAAATTGGAGGAGG+TGG | - | chr4_2:57121184-57121203 | Msa0609690:intron | 40.0% | |
| TAAATTGGAGGAGGTGGAAA+TGG | - | chr4_2:57121190-57121209 | Msa0609690:intron | 40.0% | |
| ! | CTGATACTAAATATAGCGGG+TGG | + | chr4_2:57121219-57121238 | None:intergenic | 40.0% |
| CACCCGCTATATTTAGTATC+AGG | - | chr4_2:57121217-57121236 | Msa0609690:intron | 40.0% | |
| CTAATCCTTGTAATCAGCCT+TGG | - | chr4_2:57121281-57121300 | Msa0609690:intron | 40.0% | |
| TGCCGGTCTCTTCTATGTAT+TGG | + | chr4_2:57116963-57116982 | None:intergenic | 45.0% | |
| TACATAGAAGAGACCGGCAA+CGG | - | chr4_2:57116964-57116983 | Msa0609690:three_prime_UTR | 45.0% | |
| !! | GTTCTGGTTCAGTGGTAACT+TGG | + | chr4_2:57118841-57118860 | None:intergenic | 45.0% |
| !! | AATGTGTGGTTCTGGTTCAG+TGG | + | chr4_2:57118849-57118868 | None:intergenic | 45.0% |
| TGGCAGAAAATGTGTGGTTC+TGG | + | chr4_2:57118857-57118876 | None:intergenic | 45.0% | |
| CTGAATCCCACATGACCTTT+AGG | + | chr4_2:57118954-57118973 | None:intergenic | 45.0% | |
| ! | TGGTTTGGGGAGAATAGCAT+GGG | + | chr4_2:57119606-57119625 | None:intergenic | 45.0% |
| CCTTGAAGAAGAGTGGTTTG+GGG | + | chr4_2:57119619-57119638 | None:intergenic | 45.0% | |
| GACCTTGAAGAAGAGTGGTT+TGG | + | chr4_2:57119621-57119640 | None:intergenic | 45.0% | |
| !! | GTGAAGTGAAGAGTGTTGGT+GGG | + | chr4_2:57119662-57119681 | None:intergenic | 45.0% |
| !! | TGTGAAGTGAAGAGTGTTGG+TGG | + | chr4_2:57119663-57119682 | None:intergenic | 45.0% |
| !!! | GGCTTACATTGGCTTGCTTT+TGG | - | chr4_2:57119877-57119896 | Msa0609690:intron | 45.0% |
| TCCTCTGTTTATGCCTATGG+TGG | - | chr4_2:57119920-57119939 | Msa0609690:intron | 45.0% | |
| TCCACCATAGGCATAAACAG+AGG | + | chr4_2:57119924-57119943 | None:intergenic | 45.0% | |
| TCTGTTTATGCCTATGGTGG+AGG | - | chr4_2:57119923-57119942 | Msa0609690:intron | 45.0% | |
| ! | TTTATGCCTATGGTGGAGGA+TGG | - | chr4_2:57119927-57119946 | Msa0609690:intron | 45.0% |
| ATTAGTCCATCCTCCACCAT+AGG | + | chr4_2:57119936-57119955 | None:intergenic | 45.0% | |
| AATGCACATGCCACCTTCTA+TGG | - | chr4_2:57119953-57119972 | Msa0609690:intron | 45.0% | |
| ATCACTTCCTCCATAGAAGG+TGG | + | chr4_2:57119966-57119985 | None:intergenic | 45.0% | |
| AGCATCACTTCCTCCATAGA+AGG | + | chr4_2:57119969-57119988 | None:intergenic | 45.0% | |
| TATGGAGGAAGTGATGCTTC+AGG | - | chr4_2:57119971-57119990 | Msa0609690:intron | 45.0% | |
| ATTAGTGGCAGTGACCACAA+TGG | + | chr4_2:57120301-57120320 | None:intergenic | 45.0% | |
| GCCTTACCAAACAATCAAGG+TGG | - | chr4_2:57120339-57120358 | Msa0609690:intron | 45.0% | |
| CACCAACCACCTTGATTGTT+TGG | + | chr4_2:57120348-57120367 | None:intergenic | 45.0% | |
| ! | TAGGGTGTCATGTAGGAGAA+AGG | - | chr4_2:57120561-57120580 | Msa0609690:intron | 45.0% |
| ! | AGGGTGTCATGTAGGAGAAA+GGG | - | chr4_2:57120562-57120581 | Msa0609690:intron | 45.0% |
| ! | GTAGGAGAAAGGGAGGTATA+AGG | - | chr4_2:57120572-57120591 | Msa0609690:intron | 45.0% |
| GTTCTTATCACCAACGTTGG+TGG | - | chr4_2:57120628-57120647 | Msa0609690:intron | 45.0% | |
| GTACATGCTGCATCCATCAA+AGG | - | chr4_2:57120661-57120680 | Msa0609690:intron | 45.0% | |
| TCCAATAATGTTGCTCCAGC+TGG | - | chr4_2:57120805-57120824 | Msa0609690:intron | 45.0% | |
| TCCAGCTGGAGCAACATTAT+TGG | + | chr4_2:57120809-57120828 | None:intergenic | 45.0% | |
| ATAATGTTGCTCCAGCTGGA+TGG | - | chr4_2:57120809-57120828 | Msa0609690:intron | 45.0% | |
| CCCTTCAATTCATGGCTCTT+TGG | - | chr4_2:57121052-57121071 | Msa0609690:intron | 45.0% | |
| AAACATACCTTACCCAGCCA+AGG | + | chr4_2:57121301-57121320 | None:intergenic | 45.0% | |
| ! | TGGCTGGGTAAGGTATGTTT+TGG | - | chr4_2:57121301-57121320 | Msa0609690:intron | 45.0% |
| !!! | TTATATTTTTTTTATATTGT+TGG | + | chr4_2:57118039-57118058 | None:intergenic | 5.0% |
| !!! | AAAATTGTTTAAAATATAAT+TGG | - | chr4_2:57118105-57118124 | Msa0609690:intron | 5.0% |
| !!! | AAATTGTTTAAAATATAATT+GGG | - | chr4_2:57118106-57118125 | Msa0609690:intron | 5.0% |
| !! | TTAATTAAAAAAATGATAAA+AGG | - | chr4_2:57118624-57118643 | Msa0609690:intron | 5.0% |
| CACAGGTTACTAACCTTCCG+CGG | + | chr4_2:57118781-57118800 | None:intergenic | 50.0% | |
| TTCAGTGGTAACTTGGGAGC+GGG | + | chr4_2:57118834-57118853 | None:intergenic | 50.0% | |
| GTTCAGTGGTAACTTGGGAG+CGG | + | chr4_2:57118835-57118854 | None:intergenic | 50.0% | |
| ! | GTGGTTTGGGGAGAATAGCA+TGG | + | chr4_2:57119607-57119626 | None:intergenic | 50.0% |
| CCCCAAACCACTCTTCTTCA+AGG | - | chr4_2:57119616-57119635 | Msa0609690:intron | 50.0% | |
| ! | TTTTGTGTAGGTGGGGCTTG+TGG | - | chr4_2:57120138-57120157 | Msa0609690:intron | 50.0% |
| GGTGTGCTAATGACCACAGA+TGG | - | chr4_2:57120262-57120281 | Msa0609690:intron | 50.0% | |
| TGACCACAATGGAACCAGGA+AGG | + | chr4_2:57120290-57120309 | None:intergenic | 50.0% | |
| GTGTCATGTAGGAGAAAGGG+AGG | - | chr4_2:57120565-57120584 | Msa0609690:intron | 50.0% | |
| TGACCAAAAGACCATCCAGC+TGG | + | chr4_2:57120823-57120842 | None:intergenic | 50.0% | |
| GAGGATTTGAGCACCAGTGT+AGG | + | chr4_2:57120848-57120867 | None:intergenic | 50.0% | |
| TCCTTGTAATCAGCCTTGGC+TGG | - | chr4_2:57121285-57121304 | Msa0609690:intron | 50.0% | |
| CCTTGTAATCAGCCTTGGCT+GGG | - | chr4_2:57121286-57121305 | Msa0609690:intron | 50.0% | |
| TAATCAGCCTTGGCTGGGTA+AGG | - | chr4_2:57121291-57121310 | Msa0609690:intron | 50.0% | |
| CCACAGAGCAAGTGAGCACA+TGG | + | chr4_2:57116883-57116902 | None:intergenic | 55.0% | |
| CCATGTGCTCACTTGCTCTG+TGG | - | chr4_2:57116880-57116899 | Msa0609690:three_prime_UTR | 55.0% | |
| AACCACTGTGTTGCCGTTGC+CGG | + | chr4_2:57116980-57116999 | None:intergenic | 55.0% | |
| GCAACGGCAACACAGTGGTT+GGG | - | chr4_2:57116980-57116999 | Msa0609690:three_prime_UTR | 55.0% | |
| CAACGGCAACACAGTGGTTG+GGG | - | chr4_2:57116981-57117000 | Msa0609690:three_prime_UTR | 55.0% | |
| GTAGCACTTGCATGTGACCC+CGG | - | chr4_2:57118753-57118772 | Msa0609690:intron | 55.0% | |
| TTACTAACCTTCCGCGGCTC+CGG | + | chr4_2:57118775-57118794 | None:intergenic | 55.0% | |
| ! | TGCCTGCCCCACATGGATTT+TGG | - | chr4_2:57118801-57118820 | Msa0609690:intron | 55.0% |
| CTCCAAAATCCATGTGGGGC+AGG | + | chr4_2:57118806-57118825 | None:intergenic | 55.0% | |
| GCACATGCCACCTTCTATGG+AGG | - | chr4_2:57119956-57119975 | Msa0609690:intron | 55.0% | |
| GTAGGTGGGGCTTGTGGATA+TGG | - | chr4_2:57120144-57120163 | Msa0609690:intron | 55.0% | |
| !! | AACCAGGAAGGCACCATCTG+TGG | + | chr4_2:57120278-57120297 | None:intergenic | 55.0% |
| GTGCCTTCCTGGTTCCATTG+TGG | - | chr4_2:57120284-57120303 | Msa0609690:intron | 55.0% | |
| GCAGTGACCACAATGGAACC+AGG | + | chr4_2:57120294-57120313 | None:intergenic | 55.0% | |
| !! | ATCACCAACGTTGGTGGTGC+TGG | - | chr4_2:57120634-57120653 | Msa0609690:intron | 55.0% |
| ATCTCCAGCACCACCAACGT+TGG | + | chr4_2:57120641-57120660 | None:intergenic | 55.0% | |
| ! | GCTCCAGCTGGATGGTCTTT+TGG | - | chr4_2:57120817-57120836 | Msa0609690:intron | 55.0% |
| CCCAGCCAAGGCTGATTACA+AGG | + | chr4_2:57121289-57121308 | None:intergenic | 55.0% | |
| GGCAACGGCAACACAGTGGT+TGG | - | chr4_2:57116979-57116998 | Msa0609690:three_prime_UTR | 60.0% | |
| TACTAACCTTCCGCGGCTCC+GGG | + | chr4_2:57118774-57118793 | None:intergenic | 60.0% | |
| GACCACAGATGGTGCCTTCC+TGG | - | chr4_2:57120273-57120292 | Msa0609690:intron | 60.0% | |
| GACCGGCAACGGCAACACAG+TGG | - | chr4_2:57116975-57116994 | Msa0609690:three_prime_UTR | 65.0% | |
| ACTAACCTTCCGCGGCTCCG+GGG | + | chr4_2:57118773-57118792 | None:intergenic | 65.0% | |
| ACCTGTGTGCCTGCCCCACA+TGG | - | chr4_2:57118794-57118813 | Msa0609690:CDS | 65.0% | |
| TCCATGTGGGGCAGGCACAC+AGG | + | chr4_2:57118798-57118817 | None:intergenic | 65.0% | |
| TGCATGTGACCCCGGAGCCG+CGG | - | chr4_2:57118761-57118780 | Msa0609690:intron | 70.0% | |
| TGTGACCCCGGAGCCGCGGA+AGG | - | chr4_2:57118765-57118784 | Msa0609690:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 57116799 | 57121397 | 57116799 | ID=Msa0609690;Name=Msa0609690 |
| chr4_2 | mRNA | 57116799 | 57121397 | 57116799 | ID=Msa0609690-mRNA-1;Parent=Msa0609690;Name=Msa0609690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.28|0.71|0.33|0.28|7|527|269 |
| chr4_2 | exon | 57116799 | 57117632 | 57116799 | ID=Msa0609690-mRNA-1:exon:14841;Parent=Msa0609690-mRNA-1 |
| chr4_2 | exon | 57117736 | 57117933 | 57117736 | ID=Msa0609690-mRNA-1:exon:14840;Parent=Msa0609690-mRNA-1 |
| chr4_2 | exon | 57118012 | 57118048 | 57118012 | ID=Msa0609690-mRNA-1:exon:14839;Parent=Msa0609690-mRNA-1 |
| chr4_2 | exon | 57118195 | 57118324 | 57118195 | ID=Msa0609690-mRNA-1:exon:14838;Parent=Msa0609690-mRNA-1 |
| chr4_2 | exon | 57118456 | 57118544 | 57118456 | ID=Msa0609690-mRNA-1:exon:14837;Parent=Msa0609690-mRNA-1 |
| chr4_2 | exon | 57118772 | 57118814 | 57118772 | ID=Msa0609690-mRNA-1:exon:14836;Parent=Msa0609690-mRNA-1 |
| chr4_2 | exon | 57121392 | 57121397 | 57121392 | ID=Msa0609690-mRNA-1:exon:14835;Parent=Msa0609690-mRNA-1 |
| chr4_2 | CDS | 57121392 | 57121397 | 57121392 | ID=Msa0609690-mRNA-1:cds;Parent=Msa0609690-mRNA-1 |
| chr4_2 | CDS | 57118772 | 57118814 | 57118772 | ID=Msa0609690-mRNA-1:cds;Parent=Msa0609690-mRNA-1 |
| chr4_2 | CDS | 57118456 | 57118544 | 57118456 | ID=Msa0609690-mRNA-1:cds;Parent=Msa0609690-mRNA-1 |
| chr4_2 | CDS | 57118195 | 57118324 | 57118195 | ID=Msa0609690-mRNA-1:cds;Parent=Msa0609690-mRNA-1 |
| chr4_2 | CDS | 57118012 | 57118048 | 57118012 | ID=Msa0609690-mRNA-1:cds;Parent=Msa0609690-mRNA-1 |
| chr4_2 | CDS | 57117736 | 57117933 | 57117736 | ID=Msa0609690-mRNA-1:cds;Parent=Msa0609690-mRNA-1 |
| chr4_2 | CDS | 57117326 | 57117632 | 57117326 | ID=Msa0609690-mRNA-1:cds;Parent=Msa0609690-mRNA-1 |
| chr4_2 | three_prime_UTR | 57116799 | 57117325 | 57116799 | ID=Msa0609690-mRNA-1:three_prime_utr;Parent=Msa0609690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
