AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692280 MtrunA17_Chr4g0042521 98.790 248 3 0 1 248 1 248 0.0 503
Msa0692280 MtrunA17_Chr5g0417701 86.235 247 34 0 1 247 1 247 1.36e-163 452
Msa0692280 MtrunA17_Chr3g0128791 80.165 242 48 0 6 247 12 253 2.65e-146 409
Msa0692280 MtrunA17_Chr3g0128801 80.165 242 48 0 6 247 12 253 5.65e-146 408
Msa0692280 MtrunA17_Chr3g0092071 82.051 234 42 0 14 247 14 247 1.68e-144 404
Msa0692280 MtrunA17_Chr5g0432611 77.143 245 55 1 4 247 7 251 1.50e-139 392
Msa0692280 MtrunA17_Chr3g0107311 76.923 247 57 0 1 247 8 254 6.58e-136 382
Msa0692280 MtrunA17_Chr3g0107291 76.210 248 57 2 1 247 14 260 4.25e-134 378
Msa0692280 MtrunA17_Chr7g0217661 74.699 249 52 3 1 247 1 240 8.54e-133 374
Msa0692280 MtrunA17_Chr5g0435311 70.732 246 69 2 1 244 59 303 1.76e-127 363
Msa0692280 MtrunA17_Chr7g0238681 68.379 253 71 3 1 244 1 253 1.58e-123 351
Msa0692280 MtrunA17_Chr2g0328261 69.048 252 68 4 1 244 6 255 3.49e-123 350
Msa0692280 MtrunA17_Chr6g0453341 74.502 251 53 3 1 248 11 253 1.01e-122 349
Msa0692280 MtrunA17_Chr4g0031621 66.400 250 77 3 1 244 5 253 1.64e-114 328
Msa0692280 MtrunA17_Chr1g0193631 64.502 231 78 3 16 242 21 251 3.36e-107 310
Msa0692280 MtrunA17_Chr1g0157061 65.581 215 71 2 32 243 22 236 1.68e-104 302
Msa0692280 MtrunA17_Chr7g0271001 60.408 245 88 4 7 242 4 248 2.59e-104 302
Msa0692280 MtrunA17_Chr4g0069711 57.778 225 90 3 23 244 59 281 4.97e-97 285
Msa0692280 MtrunA17_Chr7g0218741 55.731 253 103 4 1 246 1 251 7.44e-95 278
Msa0692280 MtrunA17_Chr7g0218751 58.108 222 89 2 25 244 28 247 2.16e-91 270
Msa0692280 MtrunA17_Chr8g0360041 57.399 223 91 2 25 245 31 251 2.49e-91 270
Msa0692280 MtrunA17_Chr5g0433841 56.250 224 97 1 25 247 41 264 2.31e-90 267
Msa0692280 MtrunA17_Chr5g0398271 55.405 222 95 3 25 243 37 257 1.15e-86 258
Msa0692280 MtrunA17_Chr7g0218761 59.701 201 77 2 44 242 8 206 5.50e-86 254
Msa0692280 MtrunA17_Chr4g0021561 52.889 225 104 1 25 247 32 256 6.23e-86 256
Msa0692280 MtrunA17_Chr4g0057091 55.605 223 93 4 25 243 36 256 2.16e-84 252
Msa0692280 MtrunA17_Chr8g0360721 56.716 201 83 2 44 242 17 215 1.49e-80 241
Msa0692280 MtrunA17_Chr3g0109801 52.586 232 101 5 25 247 53 284 2.11e-78 238
Msa0692280 MtrunA17_Chr2g0324191 48.000 125 63 1 25 147 28 152 9.77e-40 134
Msa0692280 MtrunA17_Chr4g0022841 52.991 117 55 0 129 245 1 117 5.56e-39 131
Msa0692280 MtrunA17_Chr4g0022851 64.948 97 28 2 25 119 32 124 7.09e-37 126
Msa0692280 MtrunA17_Chr2g0324181 57.426 101 43 0 147 247 17 117 1.17e-35 123
Msa0692280 MtrunA17_Chr2g0324221 30.769 234 132 9 25 243 35 253 9.80e-27 104
Msa0692280 MtrunA17_Chr2g0324201 31.197 234 131 10 25 243 33 251 1.06e-25 101
Msa0692280 MtrunA17_Chr7g0231221 32.314 229 127 10 30 242 53 269 1.66e-24 98.6
Msa0692280 MtrunA17_Chr4g0021641 31.602 231 134 9 25 243 41 259 3.93e-24 97.4
Msa0692280 MtrunA17_Chr4g0055601 29.630 243 157 7 8 243 11 246 7.62e-23 93.6
Msa0692280 MtrunA17_Chr8g0359981 54.118 85 30 4 67 147 2 81 7.82e-23 90.1
Msa0692280 MtrunA17_Chr8g0359971 54.545 77 34 1 168 243 1 77 5.49e-22 86.7
Msa0692280 MtrunA17_Chr4g0012801 29.218 243 139 11 16 242 33 258 1.33e-20 87.8
Msa0692280 MtrunA17_Chr7g0231211 29.536 237 129 12 25 242 47 264 2.91e-20 87.0
Msa0692280 MtrunA17_Chr4g0055561 27.347 245 161 9 6 242 9 244 4.61e-18 80.9
Msa0692280 MtrunA17_Chr5g0399811 26.446 242 163 8 8 242 12 245 1.22e-16 77.0
Msa0692280 MtrunA17_Chr1g0193571 60.784 51 20 0 192 242 4 54 1.28e-15 69.3
Msa0692280 MtrunA17_Chr4g0038741 28.700 223 126 8 36 242 32 237 1.98e-15 73.6
Msa0692280 MtrunA17_Chr4g0055061 29.461 241 135 12 25 247 29 252 2.63e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692280 AT1G69530.2 82.329 249 42 2 1 247 1 249 6.43e-151 421
Msa0692280 AT1G69530.1 82.329 249 42 2 1 247 1 249 6.43e-151 421
Msa0692280 AT2G03090.1 78.947 247 52 0 1 247 6 252 3.83e-149 416
Msa0692280 AT1G69530.3 82.449 245 41 2 1 243 1 245 8.99e-149 416
Msa0692280 AT1G26770.1 81.855 248 44 1 1 247 1 248 2.40e-141 396
Msa0692280 AT1G26770.2 81.855 248 44 1 1 247 11 258 3.66e-141 396
Msa0692280 AT5G56320.1 72.510 251 65 1 1 247 1 251 9.11e-136 382
Msa0692280 AT5G56320.2 72.510 251 65 1 1 247 1 251 9.11e-136 382
Msa0692280 AT5G56320.3 72.510 251 65 1 1 247 1 251 5.25e-135 382
Msa0692280 AT2G40610.1 74.074 243 62 1 6 247 11 253 5.53e-135 380
Msa0692280 AT2G39700.1 69.444 252 69 2 1 244 1 252 5.24e-127 360
Msa0692280 AT5G05290.1 69.076 249 74 2 2 247 7 255 2.50e-126 358
Msa0692280 AT1G69530.4 71.888 249 38 3 1 247 1 219 3.16e-125 354
Msa0692280 AT1G69530.5 73.333 240 52 4 1 238 1 230 5.02e-125 355
Msa0692280 AT5G02260.1 67.742 248 76 2 1 244 6 253 1.40e-124 354
Msa0692280 AT2G37640.1 70.539 241 68 2 6 244 18 257 1.46e-124 354
Msa0692280 AT3G55500.1 73.333 225 58 1 22 244 31 255 3.19e-124 353
Msa0692280 AT3G29030.1 74.107 224 49 2 25 247 38 253 1.20e-119 342
Msa0692280 AT2G28950.1 66.667 252 76 2 1 244 1 252 4.01e-117 335
Msa0692280 AT1G20190.1 71.300 223 61 2 24 243 25 247 1.99e-114 328
Msa0692280 AT2G37640.2 71.707 205 56 1 42 244 28 232 9.53e-110 316
Msa0692280 AT4G01630.1 62.762 239 85 3 8 242 11 249 9.02e-107 309
Msa0692280 AT5G39280.1 56.067 239 100 2 9 244 35 271 4.27e-98 288
Msa0692280 AT5G39300.1 58.636 220 89 1 25 244 55 272 2.89e-97 286
Msa0692280 AT5G39270.1 58.182 220 90 1 25 244 58 275 1.98e-93 276
Msa0692280 AT5G39290.1 57.273 220 92 1 25 244 58 275 1.21e-92 274
Msa0692280 AT1G20190.2 68.449 187 56 2 60 243 2 188 2.71e-91 268
Msa0692280 AT5G39310.1 56.757 222 93 2 24 244 89 308 3.65e-89 266
Msa0692280 AT1G12560.1 55.217 230 100 3 15 242 27 255 2.04e-86 258
Msa0692280 AT1G62980.1 52.479 242 109 5 6 242 10 250 4.23e-85 254
Msa0692280 AT3G03220.1 52.679 224 105 1 25 247 40 263 3.91e-84 252
Msa0692280 AT3G15370.1 52.675 243 101 7 6 243 12 245 6.24e-82 246
Msa0692280 AT5G39260.1 53.846 221 94 2 25 244 45 258 8.00e-79 238
Msa0692280 AT4G38210.1 50.661 227 108 2 25 247 28 254 2.69e-78 237
Msa0692280 AT3G15370.2 47.253 273 100 8 6 243 12 275 2.39e-75 230
Msa0692280 AT4G28250.1 33.190 232 130 9 25 243 36 255 8.86e-28 107
Msa0692280 AT2G20750.1 33.047 233 132 9 25 243 40 262 4.64e-26 103
Msa0692280 AT4G28250.2 32.468 231 127 9 25 243 36 249 2.01e-24 98.2
Msa0692280 AT1G65680.1 30.901 233 134 10 25 242 47 267 7.84e-23 94.4
Msa0692280 AT1G65681.1 29.954 217 127 9 39 242 12 216 3.55e-19 83.6
Msa0692280 AT2G45110.1 28.750 240 132 9 24 242 32 253 5.79e-19 83.6
Msa0692280 AT4G17030.1 27.203 261 161 9 2 248 4 249 1.20e-18 82.8
Msa0692280 AT4G28250.4 33.143 175 90 7 25 189 36 193 7.72e-17 77.0
Msa0692280 AT2G20750.2 31.214 173 99 6 25 186 40 203 2.15e-16 75.9
Msa0692280 AT3G60570.1 25.000 232 146 8 25 242 34 251 2.27e-16 76.6
Msa0692280 AT4G28250.3 33.140 172 88 7 25 186 36 190 4.03e-16 75.1
Msa0692280 AT3G45970.2 26.147 218 138 10 43 247 14 221 5.75e-14 69.7
Msa0692280 AT3G45960.2 29.577 213 126 10 48 247 46 247 1.62e-13 68.6
Msa0692280 AT4G38400.1 27.830 212 131 10 48 247 47 248 2.06e-12 65.5
Msa0692280 AT3G60570.2 23.832 214 135 8 43 242 4 203 3.04e-12 64.3
Msa0692280 AT3G45970.1 25.352 213 136 10 48 247 46 248 2.41e-11 62.8

Find 109 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTATGCTGCTAGGGAAAA+TGG 0.177523 4_4:-60700216 Msa0692280:three_prime_UTR
CACCCGCTATATTTAGTATT+AGG 0.195900 4_4:-60699976 Msa0692280:three_prime_UTR
AATGCACATGCCACCTTCTA+TGG 0.202737 4_4:-60701241 Msa0692280:CDS
CCCTTCAATTCATGGCTCTT+TGG 0.243078 4_4:-60700143 Msa0692280:three_prime_UTR
GCTCCAGCTGGATGGTCTTT+TGG 0.250334 4_4:-60700378 Msa0692280:CDS
TTGTGGTTGAACTACTAAAT+TGG 0.259563 4_4:-60700018 Msa0692280:three_prime_UTR
CACCAACCACCTTGGTTGTT+TGG 0.270138 4_4:+60700850 None:intergenic
TCCAGCTGGAGCAACATTAT+TGG 0.273928 4_4:+60700389 None:intergenic
GACCATAGATGGTGCCTTCC+TGG 0.298042 4_4:-60700922 Msa0692280:CDS
CTCAAATCCTCTAGAGTATA+TGG 0.299447 4_4:-60700338 Msa0692280:exon
TAAAATGGCCCTTCAATTCA+TGG 0.300109 4_4:-60700151 Msa0692280:three_prime_UTR
GTAGGTGGGGCTTGTGGATA+TGG 0.300951 4_4:-60701051 Msa0692280:intron
CTTTGGTTATTGTGGTGTTT+TGG 0.301722 4_4:-60700126 Msa0692280:three_prime_UTR
GGATATCTATGTCAAGAAAC+TGG 0.302501 4_4:-60700497 Msa0692280:CDS
AGTATTTCTAAACTTGAAAC+TGG 0.309026 4_4:+60700308 None:intergenic
GGCTTACATTGGCTTGCTTT+TGG 0.310735 4_4:-60701317 Msa0692280:CDS
ACCCGCTATATTTAGTATTA+GGG 0.314129 4_4:-60699975 Msa0692280:three_prime_UTR
GTGGCTCTTGCTATGAAATT+AGG 0.339101 4_4:-60700954 Msa0692280:CDS
CAAGAAACTGGGGACAAAAT+TGG 0.340071 4_4:-60700485 Msa0692280:CDS
TTCTCCTCTGTTTATGCCTA+TGG 0.366961 4_4:-60701277 Msa0692280:CDS
CCCCAAACCACTCTTCTTCA+AGG 0.370993 4_4:-60701578 None:intergenic
TAAATTGGAGGAGGTGGAAA+TGG 0.377719 4_4:-60700003 Msa0692280:three_prime_UTR
TGGCTGGGTAAGGTATGTTT+TGG 0.381554 4_4:-60699880 Msa0692280:three_prime_UTR
TCCAATAATGTTGCTCCAGC+TGG 0.392823 4_4:-60700390 Msa0692280:CDS
CCCAGCCAAGGCTGATTACA+AGG 0.393740 4_4:+60699895 None:intergenic
AACCAGGAAGGCACCATCTA+TGG 0.400538 4_4:+60700920 None:intergenic
GCAGGAGAAAGGGAGGTATA+AGG 0.412967 4_4:-60700623 Msa0692280:CDS
ATCACCAACGTTGGTGGTGC+TGG 0.415234 4_4:-60700561 Msa0692280:CDS
TTGTTTGGTAAGGCATTGTT+TGG 0.417898 4_4:+60700865 None:intergenic
TCCTTGTAATCAGCCTTGGC+TGG 0.421343 4_4:-60699896 Msa0692280:three_prime_UTR
AACTACTAAATTGGAGGAGG+TGG 0.430327 4_4:-60700009 Msa0692280:three_prime_UTR
TATGGAGGAAGTGATGCTTC+AGG 0.438776 4_4:-60701223 Msa0692280:CDS
TTCAAGGTCTATAAATTAAG+TGG 0.448653 4_4:-60701562 Msa0692280:five_prime_UTR
AGCATCACTTCCTCCATAGA+AGG 0.449496 4_4:+60701228 None:intergenic
GGTATAAGGTTCACTATCAA+TGG 0.450863 4_4:-60700609 Msa0692280:CDS
AGTATGCTGCTAGGGAAAAT+GGG 0.460706 4_4:-60700215 Msa0692280:three_prime_UTR
CTAATCCTTGTAATCAGCCT+TGG 0.470855 4_4:-60699900 Msa0692280:three_prime_UTR
ACCACCTTGGTTGTTTGGTA+AGG 0.471656 4_4:+60700855 None:intergenic
TCATGGCTCTTTGGTTATTG+TGG 0.473038 4_4:-60700134 Msa0692280:three_prime_UTR
TTCCATACCCTTGACTGTAA+AGG 0.477366 4_4:+60701025 None:intergenic
ACCAAAGAGCCATGAATTGA+AGG 0.477746 4_4:+60700142 None:intergenic
TAATCAGCCTTGGCTGGGTA+AGG 0.486468 4_4:-60699890 Msa0692280:three_prime_UTR
TAGTACCTCAATAGTATACT+AGG 0.491481 4_4:-60700247 Msa0692280:three_prime_UTR
TAGGGTGTCATGCAGGAGAA+AGG 0.494659 4_4:-60700634 Msa0692280:CDS
GAAATTACTTTGATAGTCAA+AGG 0.505026 4_4:+60701468 None:intergenic
TGGTTGAACTACTAAATTGG+AGG 0.505389 4_4:-60700015 Msa0692280:three_prime_UTR
CAGAGCAACAATTATCTCAA+TGG 0.508519 4_4:-60700462 Msa0692280:CDS
TCTGTTTATGCCTATGGTGG+AGG 0.513461 4_4:-60701271 Msa0692280:CDS
CGTATTGCTCAATACAAAGC+TGG 0.513556 4_4:-60700781 Msa0692280:CDS
AGTGATGCTTCAGGAACAAT+GGG 0.514794 4_4:-60701214 Msa0692280:intron
TTTGGTAAGGCATTGTTTGG+AGG 0.514834 4_4:+60700868 None:intergenic
TCCTCTGTTTATGCCTATGG+TGG 0.517540 4_4:-60701274 Msa0692280:CDS
AATATCCTAGTATACTATTG+AGG 0.517752 4_4:+60700242 None:intergenic
GTTCTTATCACCAACGTTGG+TGG 0.523355 4_4:-60700567 Msa0692280:CDS
GTTGAGCAAGATCAAAATGT+TGG 0.527634 4_4:+60700815 None:intergenic
TTTAAGGTTACAACTAGTGA+TGG 0.529102 4_4:-60700426 Msa0692280:CDS
AACCTTTACAGTCAAGGGTA+TGG 0.530538 4_4:-60701027 Msa0692280:CDS
ACCTACCTTCTAAAATCTAC+AGG 0.533353 4_4:+60700751 None:intergenic
AAACAGGAAATGGCTTACAT+TGG 0.533906 4_4:-60701328 Msa0692280:intron
CAACGTTGGTGATAAGAACT+AGG 0.542775 4_4:+60700571 None:intergenic
TACATGCTGCATCCATCAAA+GGG 0.543754 4_4:-60700533 Msa0692280:CDS
TTCAACAATGGCTTAAGCTG+TGG 0.546607 4_4:-60700973 Msa0692280:CDS
GATCAAAATGTTGGAGAGGA+GGG 0.550651 4_4:+60700824 None:intergenic
GTTTGGAGGACAGAAATTTG+TGG 0.554497 4_4:+60700882 None:intergenic
AAGTGATGCTTCAGGAACAA+TGG 0.556486 4_4:-60701215 Msa0692280:CDS
ATATTAAATAGTATGCTGCT+AGG 0.557428 4_4:-60700224 Msa0692280:three_prime_UTR
AGGGTGTCATGCAGGAGAAA+GGG 0.560420 4_4:-60700633 Msa0692280:CDS
TATTAAATAGTATGCTGCTA+GGG 0.560427 4_4:-60700223 Msa0692280:three_prime_UTR
CCAAAGAGCCATGAATTGAA+GGG 0.563412 4_4:+60700143 None:intergenic
ATGGTAACCTTTACAGTCAA+GGG 0.564595 4_4:-60701032 Msa0692280:CDS
TGTGAAGTGAAGAGTGTTGG+TGG 0.564670 4_4:+60701534 None:intergenic
CCTTGTAATCAGCCTTGGCT+GGG 0.566017 4_4:-60699895 Msa0692280:three_prime_UTR
GTACATGCTGCATCCATCAA+AGG 0.567778 4_4:-60700534 Msa0692280:CDS
TGACCAAAAGACCATCCAGC+TGG 0.568697 4_4:+60700375 None:intergenic
GCCCTAATACTAAATATAGC+GGG 0.569872 4_4:+60699974 None:intergenic
GATATCTATGTCAAGAAACT+GGG 0.570919 4_4:-60700496 Msa0692280:CDS
TATGGTAACCTTTACAGTCA+AGG 0.571142 4_4:-60701033 Msa0692280:CDS
TTTATGCCTATGGTGGAGGA+TGG 0.581237 4_4:-60701267 Msa0692280:CDS
AGATCAAAATGTTGGAGAGG+AGG 0.586254 4_4:+60700823 None:intergenic
ATAATGTTGCTCCAGCTGGA+TGG 0.590574 4_4:-60700386 Msa0692280:CDS
GTGCCTTCCTGGTTCCATTG+TGG 0.591922 4_4:-60700911 Msa0692280:CDS
CTAATATAGATGTTAGCAGA+AGG 0.593196 4_4:-60700060 Msa0692280:three_prime_UTR
ATTAGTCCATCCTCCACCAT+AGG 0.598598 4_4:+60701261 None:intergenic
GAGGGTTACACCAACCACCT+TGG 0.598920 4_4:+60700842 None:intergenic
GCAGTGACCACAATGGAACC+AGG 0.602351 4_4:+60700904 None:intergenic
ATTTGTGTAGGGTGTCATGC+AGG 0.609417 4_4:-60700641 Msa0692280:intron
TACCAAACAACCAAGGTGGT+TGG 0.612778 4_4:-60700852 Msa0692280:CDS
ATATTAGCAGAGCAGCAGAA+TGG 0.618183 4_4:+60700076 None:intergenic
GAGGATTTGAGCACCAGTGT+AGG 0.625146 4_4:+60700350 None:intergenic
GGTGTGCTAATGACCATAGA+TGG 0.625411 4_4:-60700933 Msa0692280:CDS
ATGTGTGAAGTGAAGAGTGT+TGG 0.627130 4_4:+60701531 None:intergenic
AATTTGACCATATACTCTAG+AGG 0.632960 4_4:+60700331 None:intergenic
AAACATACCTTACCCAGCCA+AGG 0.637920 4_4:+60699883 None:intergenic
TTGAACTACTAAATTGGAGG+AGG 0.638601 4_4:-60700012 Msa0692280:three_prime_UTR
GCAAGATCAAAATGTTGGAG+AGG 0.641783 4_4:+60700820 None:intergenic
ATCACTTCCTCCATAGAAGG+TGG 0.643748 4_4:+60701231 None:intergenic
GCACATGCCACCTTCTATGG+AGG 0.644186 4_4:-60701238 Msa0692280:CDS
TGCCCTAATACTAAATATAG+CGG 0.655149 4_4:+60699973 None:intergenic
CTAATACTAAATATAGCGGG+TGG 0.655412 4_4:+60699977 None:intergenic
GTGAAGTGAAGAGTGTTGGT+GGG 0.657415 4_4:+60701535 None:intergenic
CTAGTTCTTATCACCAACGT+TGG 0.662164 4_4:-60700570 Msa0692280:CDS
GTGTCATGCAGGAGAAAGGG+AGG 0.675427 4_4:-60700630 Msa0692280:CDS
TGACCACAATGGAACCAGGA+AGG 0.676921 4_4:+60700908 None:intergenic
ATCTCCAGCACCACCAACGT+TGG 0.688696 4_4:+60700557 None:intergenic
ATTTGTGGCAGTGACCACAA+TGG 0.706109 4_4:+60700897 None:intergenic
ATATCTATGTCAAGAAACTG+GGG 0.706710 4_4:-60700495 Msa0692280:CDS
GCCTTACCAAACAACCAAGG+TGG 0.728065 4_4:-60700856 Msa0692280:CDS
TCCACCATAGGCATAAACAG+AGG 0.739179 4_4:+60701273 None:intergenic
AATGCCTTACCAAACAACCA+AGG 0.745266 4_4:-60700859 Msa0692280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAATTTTTATGTATT+TGG - chr4_4:60700674-60700693 Msa0692280:intron 10.0%
!!! ATTTTCAATTTTTATGTATT+TGG - chr4_4:60700674-60700693 Msa0692280:intron 10.0%
!!! CACATTTTAGTAAATAAATT+TGG + chr4_4:60699981-60700000 None:intergenic 15.0%
!!! CACATTTTAGTAAATAAATT+TGG + chr4_4:60699981-60700000 None:intergenic 15.0%
!! ATTTACTAAAATGTGTTACA+AGG - chr4_4:60699986-60700005 Msa0692280:three_prime_UTR 20.0%
!!! TAGTGGTTTTTATTGAAAAA+TGG + chr4_4:60700187-60700206 None:intergenic 20.0%
!!! ACTAATTTGTGTTTTTATTG+TGG - chr4_4:60700702-60700721 Msa0692280:intron 20.0%
!!! ACTTTTTCTTTATATCTTTG+TGG - chr4_4:60701334-60701353 Msa0692280:intron 20.0%
!!! ATCCTTTTAGTTTTTCATTT+TGG - chr4_4:60701421-60701440 Msa0692280:intron 20.0%
!!! TCCTTTTAGTTTTTCATTTT+GGG - chr4_4:60701422-60701441 Msa0692280:intron 20.0%
!! ATTTACTAAAATGTGTTACA+AGG - chr4_4:60699986-60700005 Msa0692280:three_prime_UTR 20.0%
!!! TAGTGGTTTTTATTGAAAAA+TGG + chr4_4:60700187-60700206 None:intergenic 20.0%
!!! ACTAATTTGTGTTTTTATTG+TGG - chr4_4:60700702-60700721 Msa0692280:intron 20.0%
!!! ACTTTTTCTTTATATCTTTG+TGG - chr4_4:60701334-60701353 Msa0692280:intron 20.0%
!!! ATCCTTTTAGTTTTTCATTT+TGG - chr4_4:60701421-60701440 Msa0692280:intron 20.0%
!!! TCCTTTTAGTTTTTCATTTT+GGG - chr4_4:60701422-60701441 Msa0692280:intron 20.0%
! TTCAAGGTCTATAAATTAAG+TGG - chr4_4:60699807-60699826 Msa0692280:three_prime_UTR 25.0%
!! GAAATTACTTTGATAGTCAA+AGG + chr4_4:60699904-60699923 None:intergenic 25.0%
!!! TTTGTTTTGTACATTGAAAC+AGG - chr4_4:60700025-60700044 Msa0692280:three_prime_UTR 25.0%
!! CAAAACTTTATTTCAAGTAG+TGG + chr4_4:60700204-60700223 None:intergenic 25.0%
!! AGTATTTCTAAACTTGAAAC+TGG + chr4_4:60701064-60701083 None:intergenic 25.0%
! AATATCCTAGTATACTATTG+AGG + chr4_4:60701130-60701149 None:intergenic 25.0%
! ATATTAAATAGTATGCTGCT+AGG - chr4_4:60701145-60701164 Msa0692280:intron 25.0%
! TATTAAATAGTATGCTGCTA+GGG - chr4_4:60701146-60701165 Msa0692280:intron 25.0%
!!! TTTGTTTTTGGTTGTTTTAG+AGG - chr4_4:60701177-60701196 Msa0692280:intron 25.0%
!!! TTTTAAAATATGCCCTTCAT+TGG + chr4_4:60701203-60701222 None:intergenic 25.0%
!!! ATGAAGGGCATATTTTAAAA+TGG - chr4_4:60701203-60701222 Msa0692280:intron 25.0%
! TCCCAAAATGAAAAACTAAA+AGG + chr4_4:60701426-60701445 None:intergenic 25.0%
! ACTTAATTTATAGACCTTGA+AGG + chr4_4:60699808-60699827 None:intergenic 25.0%
! TTCAAGGTCTATAAATTAAG+TGG - chr4_4:60699807-60699826 Msa0692280:three_prime_UTR 25.0%
!! GAAATTACTTTGATAGTCAA+AGG + chr4_4:60699904-60699923 None:intergenic 25.0%
!!! TTTGTTTTGTACATTGAAAC+AGG - chr4_4:60700025-60700044 Msa0692280:three_prime_UTR 25.0%
!! CAAAACTTTATTTCAAGTAG+TGG + chr4_4:60700204-60700223 None:intergenic 25.0%
!! AGTATTTCTAAACTTGAAAC+TGG + chr4_4:60701064-60701083 None:intergenic 25.0%
! AATATCCTAGTATACTATTG+AGG + chr4_4:60701130-60701149 None:intergenic 25.0%
! ATATTAAATAGTATGCTGCT+AGG - chr4_4:60701145-60701164 Msa0692280:intron 25.0%
! TATTAAATAGTATGCTGCTA+GGG - chr4_4:60701146-60701165 Msa0692280:intron 25.0%
!!! TTTGTTTTTGGTTGTTTTAG+AGG - chr4_4:60701177-60701196 Msa0692280:intron 25.0%
!!! TTTTAAAATATGCCCTTCAT+TGG + chr4_4:60701203-60701222 None:intergenic 25.0%
!!! ATGAAGGGCATATTTTAAAA+TGG - chr4_4:60701203-60701222 Msa0692280:intron 25.0%
! TCCCAAAATGAAAAACTAAA+AGG + chr4_4:60701426-60701445 None:intergenic 25.0%
TTGTACATTGAAACAGGAAA+TGG - chr4_4:60700031-60700050 Msa0692280:three_prime_UTR 30.0%
AACAACAAAGTCAGTGAAAT+GGG + chr4_4:60700292-60700311 None:intergenic 30.0%
AAACAACAAAGTCAGTGAAA+TGG + chr4_4:60700293-60700312 None:intergenic 30.0%
!!! GACTTTGTTGTTTTTTGTGT+AGG - chr4_4:60700300-60700319 Msa0692280:three_prime_UTR 30.0%
!!! TTTGTTGTTTTTTGTGTAGG+TGG - chr4_4:60700303-60700322 Msa0692280:three_prime_UTR 30.0%
!!! TTGTTGTTTTTTGTGTAGGT+GGG - chr4_4:60700304-60700323 Msa0692280:three_prime_UTR 30.0%
! TTGTTCCTGTAGATTTTAGA+AGG - chr4_4:60700613-60700632 Msa0692280:CDS 30.0%
TTATTGTGGTGAATTTGTGT+AGG - chr4_4:60700716-60700735 Msa0692280:intron 30.0%
TATTGTGGTGAATTTGTGTA+GGG - chr4_4:60700717-60700736 Msa0692280:intron 30.0%
GATATCTATGTCAAGAAACT+GGG - chr4_4:60700873-60700892 Msa0692280:CDS 30.0%
ATATCTATGTCAAGAAACTG+GGG - chr4_4:60700874-60700893 Msa0692280:CDS 30.0%
! TGGTCAAAGTTTGTCTTTTA+AGG - chr4_4:60700927-60700946 Msa0692280:CDS 30.0%
! TTTAAGGTTACAACTAGTGA+TGG - chr4_4:60700943-60700962 Msa0692280:CDS 30.0%
AATTTGACCATATACTCTAG+AGG + chr4_4:60701041-60701060 None:intergenic 30.0%
TAGTACCTCAATAGTATACT+AGG - chr4_4:60701122-60701141 Msa0692280:intron 30.0%
CTAATATAGATGTTAGCAGA+AGG - chr4_4:60701309-60701328 Msa0692280:CDS 30.0%
TTGTGGTTGAACTACTAAAT+TGG - chr4_4:60701351-60701370 Msa0692280:intron 30.0%
ACCCGCTATATTTAGTATTA+GGG - chr4_4:60701394-60701413 Msa0692280:intron 30.0%
TGCCCTAATACTAAATATAG+CGG + chr4_4:60701399-60701418 None:intergenic 30.0%
!!! AAGGTATGTTTTGGTTGTAT+TGG - chr4_4:60701498-60701517 Msa0692280:five_prime_UTR 30.0%
!!! AGGTATGTTTTGGTTGTATT+GGG - chr4_4:60701499-60701518 Msa0692280:five_prime_UTR 30.0%
TTGTACATTGAAACAGGAAA+TGG - chr4_4:60700031-60700050 Msa0692280:three_prime_UTR 30.0%
AACAACAAAGTCAGTGAAAT+GGG + chr4_4:60700292-60700311 None:intergenic 30.0%
AAACAACAAAGTCAGTGAAA+TGG + chr4_4:60700293-60700312 None:intergenic 30.0%
!!! GACTTTGTTGTTTTTTGTGT+AGG - chr4_4:60700300-60700319 Msa0692280:three_prime_UTR 30.0%
!!! TTTGTTGTTTTTTGTGTAGG+TGG - chr4_4:60700303-60700322 Msa0692280:three_prime_UTR 30.0%
!!! TTGTTGTTTTTTGTGTAGGT+GGG - chr4_4:60700304-60700323 Msa0692280:three_prime_UTR 30.0%
! TTGTTCCTGTAGATTTTAGA+AGG - chr4_4:60700613-60700632 Msa0692280:CDS 30.0%
TTATTGTGGTGAATTTGTGT+AGG - chr4_4:60700716-60700735 Msa0692280:intron 30.0%
TATTGTGGTGAATTTGTGTA+GGG - chr4_4:60700717-60700736 Msa0692280:intron 30.0%
GATATCTATGTCAAGAAACT+GGG - chr4_4:60700873-60700892 Msa0692280:CDS 30.0%
ATATCTATGTCAAGAAACTG+GGG - chr4_4:60700874-60700893 Msa0692280:CDS 30.0%
! TGGTCAAAGTTTGTCTTTTA+AGG - chr4_4:60700927-60700946 Msa0692280:CDS 30.0%
! TTTAAGGTTACAACTAGTGA+TGG - chr4_4:60700943-60700962 Msa0692280:CDS 30.0%
AATTTGACCATATACTCTAG+AGG + chr4_4:60701041-60701060 None:intergenic 30.0%
TAGTACCTCAATAGTATACT+AGG - chr4_4:60701122-60701141 Msa0692280:intron 30.0%
CTAATATAGATGTTAGCAGA+AGG - chr4_4:60701309-60701328 Msa0692280:CDS 30.0%
TTGTGGTTGAACTACTAAAT+TGG - chr4_4:60701351-60701370 Msa0692280:intron 30.0%
ACCCGCTATATTTAGTATTA+GGG - chr4_4:60701394-60701413 Msa0692280:intron 30.0%
TGCCCTAATACTAAATATAG+CGG + chr4_4:60701399-60701418 None:intergenic 30.0%
!!! AAGGTATGTTTTGGTTGTAT+TGG - chr4_4:60701498-60701517 Msa0692280:five_prime_UTR 30.0%
!!! AGGTATGTTTTGGTTGTATT+GGG - chr4_4:60701499-60701518 Msa0692280:five_prime_UTR 30.0%
ATGAAGGAGCAATGTGAAAA+AGG + chr4_4:60699926-60699945 None:intergenic 35.0%
GAACTTTAGCATTCAGATGA+AGG + chr4_4:60699942-60699961 None:intergenic 35.0%
AAACAGGAAATGGCTTACAT+TGG - chr4_4:60700041-60700060 Msa0692280:three_prime_UTR 35.0%
!!! TGTTGTTTTTTGTGTAGGTG+GGG - chr4_4:60700305-60700324 Msa0692280:three_prime_UTR 35.0%
TATGGTAACCTTTACAGTCA+AGG - chr4_4:60700336-60700355 Msa0692280:exon 35.0%
ATGGTAACCTTTACAGTCAA+GGG - chr4_4:60700337-60700356 Msa0692280:exon 35.0%
! AGTACAGCACTTTTCAACAA+TGG - chr4_4:60700384-60700403 Msa0692280:CDS 35.0%
!! TTGTTTGGTAAGGCATTGTT+TGG + chr4_4:60700507-60700526 None:intergenic 35.0%
GTTGAGCAAGATCAAAATGT+TGG + chr4_4:60700557-60700576 None:intergenic 35.0%
TGAGCAATACGAAGAAAAAC+AGG + chr4_4:60700579-60700598 None:intergenic 35.0%
!! TCCTGTAGATTTTAGAAGGT+AGG - chr4_4:60700617-60700636 Msa0692280:CDS 35.0%
!! ACCTACCTTCTAAAATCTAC+AGG + chr4_4:60700621-60700640 None:intergenic 35.0%
GGTATAAGGTTCACTATCAA+TGG - chr4_4:60700760-60700779 Msa0692280:CDS 35.0%
GGATATCTATGTCAAGAAAC+TGG - chr4_4:60700872-60700891 Msa0692280:CDS 35.0%
CAGAGCAACAATTATCTCAA+TGG - chr4_4:60700907-60700926 Msa0692280:CDS 35.0%
!! CTCAAATCCTCTAGAGTATA+TGG - chr4_4:60701031-60701050 Msa0692280:CDS 35.0%
!! AGGGAAAATGGGTTTGTTTT+TGG - chr4_4:60701165-60701184 Msa0692280:intron 35.0%
!!! TTGTTTTAGAGGCCAATGAA+GGG - chr4_4:60701188-60701207 Msa0692280:intron 35.0%
TAAAATGGCCCTTCAATTCA+TGG - chr4_4:60701218-60701237 Msa0692280:CDS 35.0%
! CTTTGGTTATTGTGGTGTTT+TGG - chr4_4:60701243-60701262 Msa0692280:CDS 35.0%
TGGTTGAACTACTAAATTGG+AGG - chr4_4:60701354-60701373 Msa0692280:intron 35.0%
TTGAACTACTAAATTGGAGG+AGG - chr4_4:60701357-60701376 Msa0692280:intron 35.0%
! CTAATACTAAATATAGCGGG+TGG + chr4_4:60701395-60701414 None:intergenic 35.0%
CACCCGCTATATTTAGTATT+AGG - chr4_4:60701393-60701412 Msa0692280:intron 35.0%
GCCCTAATACTAAATATAGC+GGG + chr4_4:60701398-60701417 None:intergenic 35.0%
!!! GGTATGTTTTGGTTGTATTG+GGG - chr4_4:60701500-60701519 Msa0692280:five_prime_UTR 35.0%
ATGAAGGAGCAATGTGAAAA+AGG + chr4_4:60699926-60699945 None:intergenic 35.0%
GAACTTTAGCATTCAGATGA+AGG + chr4_4:60699942-60699961 None:intergenic 35.0%
AAACAGGAAATGGCTTACAT+TGG - chr4_4:60700041-60700060 Msa0692280:three_prime_UTR 35.0%
!!! TGTTGTTTTTTGTGTAGGTG+GGG - chr4_4:60700305-60700324 Msa0692280:three_prime_UTR 35.0%
TATGGTAACCTTTACAGTCA+AGG - chr4_4:60700336-60700355 Msa0692280:exon 35.0%
ATGGTAACCTTTACAGTCAA+GGG - chr4_4:60700337-60700356 Msa0692280:exon 35.0%
! AGTACAGCACTTTTCAACAA+TGG - chr4_4:60700384-60700403 Msa0692280:CDS 35.0%
!! TTGTTTGGTAAGGCATTGTT+TGG + chr4_4:60700507-60700526 None:intergenic 35.0%
GTTGAGCAAGATCAAAATGT+TGG + chr4_4:60700557-60700576 None:intergenic 35.0%
TGAGCAATACGAAGAAAAAC+AGG + chr4_4:60700579-60700598 None:intergenic 35.0%
!! TCCTGTAGATTTTAGAAGGT+AGG - chr4_4:60700617-60700636 Msa0692280:CDS 35.0%
!! ACCTACCTTCTAAAATCTAC+AGG + chr4_4:60700621-60700640 None:intergenic 35.0%
GGTATAAGGTTCACTATCAA+TGG - chr4_4:60700760-60700779 Msa0692280:CDS 35.0%
GGATATCTATGTCAAGAAAC+TGG - chr4_4:60700872-60700891 Msa0692280:CDS 35.0%
CAGAGCAACAATTATCTCAA+TGG - chr4_4:60700907-60700926 Msa0692280:CDS 35.0%
!! CTCAAATCCTCTAGAGTATA+TGG - chr4_4:60701031-60701050 Msa0692280:CDS 35.0%
!! AGGGAAAATGGGTTTGTTTT+TGG - chr4_4:60701165-60701184 Msa0692280:intron 35.0%
!!! TTGTTTTAGAGGCCAATGAA+GGG - chr4_4:60701188-60701207 Msa0692280:intron 35.0%
TAAAATGGCCCTTCAATTCA+TGG - chr4_4:60701218-60701237 Msa0692280:CDS 35.0%
! CTTTGGTTATTGTGGTGTTT+TGG - chr4_4:60701243-60701262 Msa0692280:CDS 35.0%
TGGTTGAACTACTAAATTGG+AGG - chr4_4:60701354-60701373 Msa0692280:intron 35.0%
TTGAACTACTAAATTGGAGG+AGG - chr4_4:60701357-60701376 Msa0692280:intron 35.0%
! CTAATACTAAATATAGCGGG+TGG + chr4_4:60701395-60701414 None:intergenic 35.0%
CACCCGCTATATTTAGTATT+AGG - chr4_4:60701393-60701412 Msa0692280:intron 35.0%
GCCCTAATACTAAATATAGC+GGG + chr4_4:60701398-60701417 None:intergenic 35.0%
!!! GGTATGTTTTGGTTGTATTG+GGG - chr4_4:60701500-60701519 Msa0692280:five_prime_UTR 35.0%
! ATGTGTGAAGTGAAGAGTGT+TGG + chr4_4:60699841-60699860 None:intergenic 40.0%
TTCTCCTCTGTTTATGCCTA+TGG - chr4_4:60700092-60700111 Msa0692280:three_prime_UTR 40.0%
AAGTGATGCTTCAGGAACAA+TGG - chr4_4:60700154-60700173 Msa0692280:three_prime_UTR 40.0%
AGTGATGCTTCAGGAACAAT+GGG - chr4_4:60700155-60700174 Msa0692280:three_prime_UTR 40.0%
AACCTTTACAGTCAAGGGTA+TGG - chr4_4:60700342-60700361 Msa0692280:exon 40.0%
TTCCATACCCTTGACTGTAA+AGG + chr4_4:60700347-60700366 None:intergenic 40.0%
TTCAACAATGGCTTAAGCTG+TGG - chr4_4:60700396-60700415 Msa0692280:CDS 40.0%
! GTGGCTCTTGCTATGAAATT+AGG - chr4_4:60700415-60700434 Msa0692280:CDS 40.0%
GTTTGGAGGACAGAAATTTG+TGG + chr4_4:60700490-60700509 None:intergenic 40.0%
!! TTTGGTAAGGCATTGTTTGG+AGG + chr4_4:60700504-60700523 None:intergenic 40.0%
AATGCCTTACCAAACAACCA+AGG - chr4_4:60700510-60700529 Msa0692280:CDS 40.0%
GATCAAAATGTTGGAGAGGA+GGG + chr4_4:60700548-60700567 None:intergenic 40.0%
AGATCAAAATGTTGGAGAGG+AGG + chr4_4:60700549-60700568 None:intergenic 40.0%
GCAAGATCAAAATGTTGGAG+AGG + chr4_4:60700552-60700571 None:intergenic 40.0%
CGTATTGCTCAATACAAAGC+TGG - chr4_4:60700588-60700607 Msa0692280:CDS 40.0%
!! CAACGTTGGTGATAAGAACT+AGG + chr4_4:60700801-60700820 None:intergenic 40.0%
! CTAGTTCTTATCACCAACGT+TGG - chr4_4:60700799-60700818 Msa0692280:CDS 40.0%
TACATGCTGCATCCATCAAA+GGG - chr4_4:60700836-60700855 Msa0692280:CDS 40.0%
TCCATCAAAGGGTCAAAAAC+TGG - chr4_4:60700847-60700866 Msa0692280:CDS 40.0%
! ACCAGTTTTTGACCCTTTGA+TGG + chr4_4:60700851-60700870 None:intergenic 40.0%
TCAAAGGGTCAAAAACTGGT+TGG - chr4_4:60700851-60700870 Msa0692280:CDS 40.0%
CAAGAAACTGGGGACAAAAT+TGG - chr4_4:60700884-60700903 Msa0692280:CDS 40.0%
! TCTTTTGGTCAAACCTACAC+TGG - chr4_4:60701006-60701025 Msa0692280:CDS 40.0%
TAGTATGCTGCTAGGGAAAA+TGG - chr4_4:60701153-60701172 Msa0692280:intron 40.0%
AGTATGCTGCTAGGGAAAAT+GGG - chr4_4:60701154-60701173 Msa0692280:intron 40.0%
!!! GTTGTTTTAGAGGCCAATGA+AGG - chr4_4:60701187-60701206 Msa0692280:intron 40.0%
CCAAAGAGCCATGAATTGAA+GGG + chr4_4:60701229-60701248 None:intergenic 40.0%
ACCAAAGAGCCATGAATTGA+AGG + chr4_4:60701230-60701249 None:intergenic 40.0%
TCATGGCTCTTTGGTTATTG+TGG - chr4_4:60701235-60701254 Msa0692280:CDS 40.0%
ATATTAGCAGAGCAGCAGAA+TGG + chr4_4:60701296-60701315 None:intergenic 40.0%
AACTACTAAATTGGAGGAGG+TGG - chr4_4:60701360-60701379 Msa0692280:intron 40.0%
TAAATTGGAGGAGGTGGAAA+TGG - chr4_4:60701366-60701385 Msa0692280:intron 40.0%
CTAATCCTTGTAATCAGCCT+TGG - chr4_4:60701469-60701488 Msa0692280:intron 40.0%
! ATGTGTGAAGTGAAGAGTGT+TGG + chr4_4:60699841-60699860 None:intergenic 40.0%
TTCTCCTCTGTTTATGCCTA+TGG - chr4_4:60700092-60700111 Msa0692280:three_prime_UTR 40.0%
AAGTGATGCTTCAGGAACAA+TGG - chr4_4:60700154-60700173 Msa0692280:three_prime_UTR 40.0%
AGTGATGCTTCAGGAACAAT+GGG - chr4_4:60700155-60700174 Msa0692280:three_prime_UTR 40.0%
AACCTTTACAGTCAAGGGTA+TGG - chr4_4:60700342-60700361 Msa0692280:exon 40.0%
TTCCATACCCTTGACTGTAA+AGG + chr4_4:60700347-60700366 None:intergenic 40.0%
TTCAACAATGGCTTAAGCTG+TGG - chr4_4:60700396-60700415 Msa0692280:CDS 40.0%
! GTGGCTCTTGCTATGAAATT+AGG - chr4_4:60700415-60700434 Msa0692280:CDS 40.0%
GTTTGGAGGACAGAAATTTG+TGG + chr4_4:60700490-60700509 None:intergenic 40.0%
!! TTTGGTAAGGCATTGTTTGG+AGG + chr4_4:60700504-60700523 None:intergenic 40.0%
AATGCCTTACCAAACAACCA+AGG - chr4_4:60700510-60700529 Msa0692280:CDS 40.0%
GATCAAAATGTTGGAGAGGA+GGG + chr4_4:60700548-60700567 None:intergenic 40.0%
AGATCAAAATGTTGGAGAGG+AGG + chr4_4:60700549-60700568 None:intergenic 40.0%
GCAAGATCAAAATGTTGGAG+AGG + chr4_4:60700552-60700571 None:intergenic 40.0%
CGTATTGCTCAATACAAAGC+TGG - chr4_4:60700588-60700607 Msa0692280:CDS 40.0%
!! CAACGTTGGTGATAAGAACT+AGG + chr4_4:60700801-60700820 None:intergenic 40.0%
! CTAGTTCTTATCACCAACGT+TGG - chr4_4:60700799-60700818 Msa0692280:CDS 40.0%
TACATGCTGCATCCATCAAA+GGG - chr4_4:60700836-60700855 Msa0692280:CDS 40.0%
TCCATCAAAGGGTCAAAAAC+TGG - chr4_4:60700847-60700866 Msa0692280:CDS 40.0%
! ACCAGTTTTTGACCCTTTGA+TGG + chr4_4:60700851-60700870 None:intergenic 40.0%
TCAAAGGGTCAAAAACTGGT+TGG - chr4_4:60700851-60700870 Msa0692280:CDS 40.0%
CAAGAAACTGGGGACAAAAT+TGG - chr4_4:60700884-60700903 Msa0692280:CDS 40.0%
! TCTTTTGGTCAAACCTACAC+TGG - chr4_4:60701006-60701025 Msa0692280:CDS 40.0%
TAGTATGCTGCTAGGGAAAA+TGG - chr4_4:60701153-60701172 Msa0692280:intron 40.0%
AGTATGCTGCTAGGGAAAAT+GGG - chr4_4:60701154-60701173 Msa0692280:intron 40.0%
!!! GTTGTTTTAGAGGCCAATGA+AGG - chr4_4:60701187-60701206 Msa0692280:intron 40.0%
CCAAAGAGCCATGAATTGAA+GGG + chr4_4:60701229-60701248 None:intergenic 40.0%
ACCAAAGAGCCATGAATTGA+AGG + chr4_4:60701230-60701249 None:intergenic 40.0%
TCATGGCTCTTTGGTTATTG+TGG - chr4_4:60701235-60701254 Msa0692280:CDS 40.0%
ATATTAGCAGAGCAGCAGAA+TGG + chr4_4:60701296-60701315 None:intergenic 40.0%
AACTACTAAATTGGAGGAGG+TGG - chr4_4:60701360-60701379 Msa0692280:intron 40.0%
TAAATTGGAGGAGGTGGAAA+TGG - chr4_4:60701366-60701385 Msa0692280:intron 40.0%
CTAATCCTTGTAATCAGCCT+TGG - chr4_4:60701469-60701488 Msa0692280:intron 40.0%
!! GTGAAGTGAAGAGTGTTGGT+GGG + chr4_4:60699837-60699856 None:intergenic 45.0%
!! TGTGAAGTGAAGAGTGTTGG+TGG + chr4_4:60699838-60699857 None:intergenic 45.0%
!!! GGCTTACATTGGCTTGCTTT+TGG - chr4_4:60700052-60700071 Msa0692280:three_prime_UTR 45.0%
TCCTCTGTTTATGCCTATGG+TGG - chr4_4:60700095-60700114 Msa0692280:three_prime_UTR 45.0%
TCCACCATAGGCATAAACAG+AGG + chr4_4:60700099-60700118 None:intergenic 45.0%
TCTGTTTATGCCTATGGTGG+AGG - chr4_4:60700098-60700117 Msa0692280:three_prime_UTR 45.0%
! TTTATGCCTATGGTGGAGGA+TGG - chr4_4:60700102-60700121 Msa0692280:three_prime_UTR 45.0%
ATTAGTCCATCCTCCACCAT+AGG + chr4_4:60700111-60700130 None:intergenic 45.0%
AATGCACATGCCACCTTCTA+TGG - chr4_4:60700128-60700147 Msa0692280:three_prime_UTR 45.0%
ATCACTTCCTCCATAGAAGG+TGG + chr4_4:60700141-60700160 None:intergenic 45.0%
AGCATCACTTCCTCCATAGA+AGG + chr4_4:60700144-60700163 None:intergenic 45.0%
TATGGAGGAAGTGATGCTTC+AGG - chr4_4:60700146-60700165 Msa0692280:three_prime_UTR 45.0%
GGTGTGCTAATGACCATAGA+TGG - chr4_4:60700436-60700455 Msa0692280:CDS 45.0%
ATTTGTGGCAGTGACCACAA+TGG + chr4_4:60700475-60700494 None:intergenic 45.0%
ACCACCTTGGTTGTTTGGTA+AGG + chr4_4:60700517-60700536 None:intergenic 45.0%
TACCAAACAACCAAGGTGGT+TGG - chr4_4:60700517-60700536 Msa0692280:CDS 45.0%
! ATTTGTGTAGGGTGTCATGC+AGG - chr4_4:60700728-60700747 Msa0692280:intron 45.0%
GTTCTTATCACCAACGTTGG+TGG - chr4_4:60700802-60700821 Msa0692280:CDS 45.0%
GTACATGCTGCATCCATCAA+AGG - chr4_4:60700835-60700854 Msa0692280:CDS 45.0%
TCCAATAATGTTGCTCCAGC+TGG - chr4_4:60700979-60700998 Msa0692280:CDS 45.0%
TCCAGCTGGAGCAACATTAT+TGG + chr4_4:60700983-60701002 None:intergenic 45.0%
ATAATGTTGCTCCAGCTGGA+TGG - chr4_4:60700983-60701002 Msa0692280:CDS 45.0%
CCCTTCAATTCATGGCTCTT+TGG - chr4_4:60701226-60701245 Msa0692280:CDS 45.0%
AAACATACCTTACCCAGCCA+AGG + chr4_4:60701489-60701508 None:intergenic 45.0%
! TGGCTGGGTAAGGTATGTTT+TGG - chr4_4:60701489-60701508 Msa0692280:five_prime_UTR 45.0%
!! GTGAAGTGAAGAGTGTTGGT+GGG + chr4_4:60699837-60699856 None:intergenic 45.0%
!! TGTGAAGTGAAGAGTGTTGG+TGG + chr4_4:60699838-60699857 None:intergenic 45.0%
!!! GGCTTACATTGGCTTGCTTT+TGG - chr4_4:60700052-60700071 Msa0692280:three_prime_UTR 45.0%
TCCTCTGTTTATGCCTATGG+TGG - chr4_4:60700095-60700114 Msa0692280:three_prime_UTR 45.0%
TCCACCATAGGCATAAACAG+AGG + chr4_4:60700099-60700118 None:intergenic 45.0%
TCTGTTTATGCCTATGGTGG+AGG - chr4_4:60700098-60700117 Msa0692280:three_prime_UTR 45.0%
! TTTATGCCTATGGTGGAGGA+TGG - chr4_4:60700102-60700121 Msa0692280:three_prime_UTR 45.0%
ATTAGTCCATCCTCCACCAT+AGG + chr4_4:60700111-60700130 None:intergenic 45.0%
AATGCACATGCCACCTTCTA+TGG - chr4_4:60700128-60700147 Msa0692280:three_prime_UTR 45.0%
ATCACTTCCTCCATAGAAGG+TGG + chr4_4:60700141-60700160 None:intergenic 45.0%
AGCATCACTTCCTCCATAGA+AGG + chr4_4:60700144-60700163 None:intergenic 45.0%
TATGGAGGAAGTGATGCTTC+AGG - chr4_4:60700146-60700165 Msa0692280:three_prime_UTR 45.0%
GGTGTGCTAATGACCATAGA+TGG - chr4_4:60700436-60700455 Msa0692280:CDS 45.0%
ATTTGTGGCAGTGACCACAA+TGG + chr4_4:60700475-60700494 None:intergenic 45.0%
ACCACCTTGGTTGTTTGGTA+AGG + chr4_4:60700517-60700536 None:intergenic 45.0%
TACCAAACAACCAAGGTGGT+TGG - chr4_4:60700517-60700536 Msa0692280:CDS 45.0%
! ATTTGTGTAGGGTGTCATGC+AGG - chr4_4:60700728-60700747 Msa0692280:intron 45.0%
GTTCTTATCACCAACGTTGG+TGG - chr4_4:60700802-60700821 Msa0692280:CDS 45.0%
GTACATGCTGCATCCATCAA+AGG - chr4_4:60700835-60700854 Msa0692280:CDS 45.0%
TCCAATAATGTTGCTCCAGC+TGG - chr4_4:60700979-60700998 Msa0692280:CDS 45.0%
TCCAGCTGGAGCAACATTAT+TGG + chr4_4:60700983-60701002 None:intergenic 45.0%
ATAATGTTGCTCCAGCTGGA+TGG - chr4_4:60700983-60701002 Msa0692280:CDS 45.0%
CCCTTCAATTCATGGCTCTT+TGG - chr4_4:60701226-60701245 Msa0692280:CDS 45.0%
AAACATACCTTACCCAGCCA+AGG + chr4_4:60701489-60701508 None:intergenic 45.0%
! TGGCTGGGTAAGGTATGTTT+TGG - chr4_4:60701489-60701508 Msa0692280:five_prime_UTR 45.0%
! TTTTGTGTAGGTGGGGCTTG+TGG - chr4_4:60700312-60700331 Msa0692280:three_prime_UTR 50.0%
!! AACCAGGAAGGCACCATCTA+TGG + chr4_4:60700452-60700471 None:intergenic 50.0%
TGACCACAATGGAACCAGGA+AGG + chr4_4:60700464-60700483 None:intergenic 50.0%
GCCTTACCAAACAACCAAGG+TGG - chr4_4:60700513-60700532 Msa0692280:CDS 50.0%
CACCAACCACCTTGGTTGTT+TGG + chr4_4:60700522-60700541 None:intergenic 50.0%
! TAGGGTGTCATGCAGGAGAA+AGG - chr4_4:60700735-60700754 Msa0692280:intron 50.0%
! AGGGTGTCATGCAGGAGAAA+GGG - chr4_4:60700736-60700755 Msa0692280:intron 50.0%
! GCAGGAGAAAGGGAGGTATA+AGG - chr4_4:60700746-60700765 Msa0692280:intron 50.0%
TGACCAAAAGACCATCCAGC+TGG + chr4_4:60700997-60701016 None:intergenic 50.0%
GAGGATTTGAGCACCAGTGT+AGG + chr4_4:60701022-60701041 None:intergenic 50.0%
TCCTTGTAATCAGCCTTGGC+TGG - chr4_4:60701473-60701492 Msa0692280:intron 50.0%
CCTTGTAATCAGCCTTGGCT+GGG - chr4_4:60701474-60701493 Msa0692280:intron 50.0%
TAATCAGCCTTGGCTGGGTA+AGG - chr4_4:60701479-60701498 Msa0692280:five_prime_UTR 50.0%
! TTTTGTGTAGGTGGGGCTTG+TGG - chr4_4:60700312-60700331 Msa0692280:three_prime_UTR 50.0%
!! AACCAGGAAGGCACCATCTA+TGG + chr4_4:60700452-60700471 None:intergenic 50.0%
TGACCACAATGGAACCAGGA+AGG + chr4_4:60700464-60700483 None:intergenic 50.0%
GCCTTACCAAACAACCAAGG+TGG - chr4_4:60700513-60700532 Msa0692280:CDS 50.0%
CACCAACCACCTTGGTTGTT+TGG + chr4_4:60700522-60700541 None:intergenic 50.0%
! TAGGGTGTCATGCAGGAGAA+AGG - chr4_4:60700735-60700754 Msa0692280:intron 50.0%
! AGGGTGTCATGCAGGAGAAA+GGG - chr4_4:60700736-60700755 Msa0692280:intron 50.0%
! GCAGGAGAAAGGGAGGTATA+AGG - chr4_4:60700746-60700765 Msa0692280:intron 50.0%
TGACCAAAAGACCATCCAGC+TGG + chr4_4:60700997-60701016 None:intergenic 50.0%
GAGGATTTGAGCACCAGTGT+AGG + chr4_4:60701022-60701041 None:intergenic 50.0%
TCCTTGTAATCAGCCTTGGC+TGG - chr4_4:60701473-60701492 Msa0692280:intron 50.0%
CCTTGTAATCAGCCTTGGCT+GGG - chr4_4:60701474-60701493 Msa0692280:intron 50.0%
TAATCAGCCTTGGCTGGGTA+AGG - chr4_4:60701479-60701498 Msa0692280:five_prime_UTR 50.0%
GCACATGCCACCTTCTATGG+AGG - chr4_4:60700131-60700150 Msa0692280:three_prime_UTR 55.0%
GTAGGTGGGGCTTGTGGATA+TGG - chr4_4:60700318-60700337 Msa0692280:three_prime_UTR 55.0%
GACCATAGATGGTGCCTTCC+TGG - chr4_4:60700447-60700466 Msa0692280:CDS 55.0%
GTGCCTTCCTGGTTCCATTG+TGG - chr4_4:60700458-60700477 Msa0692280:CDS 55.0%
GCAGTGACCACAATGGAACC+AGG + chr4_4:60700468-60700487 None:intergenic 55.0%
GAGGGTTACACCAACCACCT+TGG + chr4_4:60700530-60700549 None:intergenic 55.0%
GTGTCATGCAGGAGAAAGGG+AGG - chr4_4:60700739-60700758 Msa0692280:intron 55.0%
!! ATCACCAACGTTGGTGGTGC+TGG - chr4_4:60700808-60700827 Msa0692280:CDS 55.0%
ATCTCCAGCACCACCAACGT+TGG + chr4_4:60700815-60700834 None:intergenic 55.0%
! GCTCCAGCTGGATGGTCTTT+TGG - chr4_4:60700991-60701010 Msa0692280:CDS 55.0%
CCCAGCCAAGGCTGATTACA+AGG + chr4_4:60701477-60701496 None:intergenic 55.0%
GCACATGCCACCTTCTATGG+AGG - chr4_4:60700131-60700150 Msa0692280:three_prime_UTR 55.0%
GTAGGTGGGGCTTGTGGATA+TGG - chr4_4:60700318-60700337 Msa0692280:three_prime_UTR 55.0%
GACCATAGATGGTGCCTTCC+TGG - chr4_4:60700447-60700466 Msa0692280:CDS 55.0%
GTGCCTTCCTGGTTCCATTG+TGG - chr4_4:60700458-60700477 Msa0692280:CDS 55.0%
GCAGTGACCACAATGGAACC+AGG + chr4_4:60700468-60700487 None:intergenic 55.0%
GAGGGTTACACCAACCACCT+TGG + chr4_4:60700530-60700549 None:intergenic 55.0%
GTGTCATGCAGGAGAAAGGG+AGG - chr4_4:60700739-60700758 Msa0692280:intron 55.0%
!! ATCACCAACGTTGGTGGTGC+TGG - chr4_4:60700808-60700827 Msa0692280:CDS 55.0%
ATCTCCAGCACCACCAACGT+TGG + chr4_4:60700815-60700834 None:intergenic 55.0%
! GCTCCAGCTGGATGGTCTTT+TGG - chr4_4:60700991-60701010 Msa0692280:CDS 55.0%
CCCAGCCAAGGCTGATTACA+AGG + chr4_4:60701477-60701496 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 60699806 60701585 60699806 ID=Msa0692280;Name=Msa0692280
chr4_4 mRNA 60699806 60701585 60699806 ID=Msa0692280-mRNA-1;Parent=Msa0692280;Name=Msa0692280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=113|1|1|1|0.66|0.75|4|541|248
chr4_4 exon 60699806 60700653 60699806 ID=Msa0692280-mRNA-1:exon:16709;Parent=Msa0692280-mRNA-1
chr4_4 exon 60700757 60701069 60700757 ID=Msa0692280-mRNA-1:exon:16708;Parent=Msa0692280-mRNA-1
chr4_4 exon 60701215 60701344 60701215 ID=Msa0692280-mRNA-1:exon:16707;Parent=Msa0692280-mRNA-1
chr4_4 exon 60701476 60701585 60701476 ID=Msa0692280-mRNA-1:exon:16706;Parent=Msa0692280-mRNA-1
chr4_4 five_prime_UTR 60701476 60701585 60701476 ID=Msa0692280-mRNA-1:five_prime_utr;Parent=Msa0692280-mRNA-1
chr4_4 five_prime_UTR 60701342 60701344 60701342 ID=Msa0692280-mRNA-1:five_prime_utr;Parent=Msa0692280-mRNA-1
chr4_4 CDS 60701215 60701341 60701215 ID=Msa0692280-mRNA-1:cds;Parent=Msa0692280-mRNA-1
chr4_4 CDS 60700757 60701069 60700757 ID=Msa0692280-mRNA-1:cds;Parent=Msa0692280-mRNA-1
chr4_4 CDS 60700347 60700653 60700347 ID=Msa0692280-mRNA-1:cds;Parent=Msa0692280-mRNA-1
chr4_4 three_prime_UTR 60699806 60700346 60699806 ID=Msa0692280-mRNA-1:three_prime_utr;Parent=Msa0692280-mRNA-1
Gene Sequence

>Msa0692280

ATGGCTTACATTGGCTTGCTTTTGGTGTGTTCTCTCACTATGTTCTCCTCTGTTTATGCCTATGGTGGAGGATGGACTAATGCACATGCCACCTTCTATGGAGGAAGTGATGCTTCAGGAACAATGGGTGGGGCTTGTGGATATGGTAACCTTTACAGTCAAGGGTATGGAACAAACACTGCTGCTTTGAGTACAGCACTTTTCAACAATGGCTTAAGCTGTGGCTCTTGCTATGAAATTAGGTGTGCTAATGACCATAGATGGTGCCTTCCTGGTTCCATTGTGGTCACTGCCACAAATTTCTGTCCTCCAAACAATGCCTTACCAAACAACCAAGGTGGTTGGTGTAACCCTCCTCTCCAACATTTTGATCTTGCTCAACCTGTTTTTCTTCGTATTGCTCAATACAAAGCTGGAATTGTTCCTGTAGATTTTAGAAGGGTGTCATGCAGGAGAAAGGGAGGTATAAGGTTCACTATCAATGGACATTCTTACTTCAACCTAGTTCTTATCACCAACGTTGGTGGTGCTGGAGATGTACATGCTGCATCCATCAAAGGGTCAAAAACTGGTTGGATATCTATGTCAAGAAACTGGGGACAAAATTGGCAGAGCAACAATTATCTCAATGGTCAAAGTTTGTCTTTTAAGGTTACAACTAGTGATGGTCGTACTGTTGTTTCCAATAATGTTGCTCCAGCTGGATGGTCTTTTGGTCAAACCTACACTGGTGCTCAAATCCTCTAG
Protein sequence

>Msa0692280

MAYIGLLLVCSLTMFSSVYAYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCANDHRWCLPGSIVVTATNFCPPNNALPNNQGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVDFRRVSCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHAASIKGSKTGWISMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQIL*