Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650470 | XP_024638848.1 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 1.68e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650470 | sp|Q9C554|EXPA1_ARATH | 82.329 | 249 | 42 | 2 | 1 | 247 | 1 | 249 | 6.33e-150 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650470 | I3S2Q1 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 8.04e-180 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008110 | Msa0650470 | 0.803097 | 4.101419e-49 | -8.615850e-47 |
| Msa0609690 | Msa0650470 | 0.835961 | 1.236976e-56 | -8.615850e-47 |
| Msa0650470 | Msa0689520 | 0.818315 | 2.090411e-52 | -8.615850e-47 |
| Msa0650470 | Msa0692280 | 0.836231 | 1.056133e-56 | -8.615850e-47 |
| Msa0650470 | Msa0749740 | 0.803670 | 3.120290e-49 | -8.615850e-47 |
| Msa0650470 | Msa0754520 | 0.801562 | 8.490833e-49 | -8.615850e-47 |
| Msa0650470 | Msa1018690 | 0.812859 | 3.428683e-51 | -8.615850e-47 |
| Msa0650470 | Msa1020670 | 0.824527 | 7.689713e-54 | -8.615850e-47 |
| Msa0650470 | Msa1045140 | 0.800386 | 1.476986e-48 | -8.615850e-47 |
| Msa0650470 | Msa1051830 | 0.807358 | 5.254934e-50 | -8.615850e-47 |
| Msa0650470 | Msa1144510 | 0.982135 | 2.557379e-154 | -8.615850e-47 |
| Msa0650470 | Msa1223470 | 0.808164 | 3.543221e-50 | -8.615850e-47 |
| Msa0650470 | Msa1232710 | 0.810179 | 1.311149e-50 | -8.615850e-47 |
| Msa0650470 | Msa1313300 | 0.804637 | 1.963177e-49 | -8.615850e-47 |
| Msa0650470 | Msa1369550 | 0.804229 | 2.388244e-49 | -8.615850e-47 |
| Msa0650470 | Msa1412350 | 0.802002 | 6.898561e-49 | -8.615850e-47 |
| Msa0292330 | Msa0650470 | 0.807229 | 5.596936e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650470 | MtrunA17_Chr4g0042521 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 0.0 | 503 |
| Msa0650470 | MtrunA17_Chr5g0417701 | 86.235 | 247 | 34 | 0 | 1 | 247 | 1 | 247 | 1.36e-163 | 452 |
| Msa0650470 | MtrunA17_Chr3g0128791 | 80.165 | 242 | 48 | 0 | 6 | 247 | 12 | 253 | 2.65e-146 | 409 |
| Msa0650470 | MtrunA17_Chr3g0128801 | 80.165 | 242 | 48 | 0 | 6 | 247 | 12 | 253 | 5.65e-146 | 408 |
| Msa0650470 | MtrunA17_Chr3g0092071 | 82.051 | 234 | 42 | 0 | 14 | 247 | 14 | 247 | 1.68e-144 | 404 |
| Msa0650470 | MtrunA17_Chr5g0432611 | 77.143 | 245 | 55 | 1 | 4 | 247 | 7 | 251 | 1.50e-139 | 392 |
| Msa0650470 | MtrunA17_Chr3g0107311 | 76.923 | 247 | 57 | 0 | 1 | 247 | 8 | 254 | 6.58e-136 | 382 |
| Msa0650470 | MtrunA17_Chr3g0107291 | 76.210 | 248 | 57 | 2 | 1 | 247 | 14 | 260 | 4.25e-134 | 378 |
| Msa0650470 | MtrunA17_Chr7g0217661 | 74.699 | 249 | 52 | 3 | 1 | 247 | 1 | 240 | 8.54e-133 | 374 |
| Msa0650470 | MtrunA17_Chr5g0435311 | 70.732 | 246 | 69 | 2 | 1 | 244 | 59 | 303 | 1.76e-127 | 363 |
| Msa0650470 | MtrunA17_Chr7g0238681 | 68.379 | 253 | 71 | 3 | 1 | 244 | 1 | 253 | 1.58e-123 | 351 |
| Msa0650470 | MtrunA17_Chr2g0328261 | 69.048 | 252 | 68 | 4 | 1 | 244 | 6 | 255 | 3.49e-123 | 350 |
| Msa0650470 | MtrunA17_Chr6g0453341 | 74.502 | 251 | 53 | 3 | 1 | 248 | 11 | 253 | 1.01e-122 | 349 |
| Msa0650470 | MtrunA17_Chr4g0031621 | 66.400 | 250 | 77 | 3 | 1 | 244 | 5 | 253 | 1.64e-114 | 328 |
| Msa0650470 | MtrunA17_Chr1g0193631 | 64.502 | 231 | 78 | 3 | 16 | 242 | 21 | 251 | 3.36e-107 | 310 |
| Msa0650470 | MtrunA17_Chr1g0157061 | 65.581 | 215 | 71 | 2 | 32 | 243 | 22 | 236 | 1.68e-104 | 302 |
| Msa0650470 | MtrunA17_Chr7g0271001 | 60.408 | 245 | 88 | 4 | 7 | 242 | 4 | 248 | 2.59e-104 | 302 |
| Msa0650470 | MtrunA17_Chr4g0069711 | 57.778 | 225 | 90 | 3 | 23 | 244 | 59 | 281 | 4.97e-97 | 285 |
| Msa0650470 | MtrunA17_Chr7g0218741 | 55.731 | 253 | 103 | 4 | 1 | 246 | 1 | 251 | 7.44e-95 | 278 |
| Msa0650470 | MtrunA17_Chr7g0218751 | 58.108 | 222 | 89 | 2 | 25 | 244 | 28 | 247 | 2.16e-91 | 270 |
| Msa0650470 | MtrunA17_Chr8g0360041 | 57.399 | 223 | 91 | 2 | 25 | 245 | 31 | 251 | 2.49e-91 | 270 |
| Msa0650470 | MtrunA17_Chr5g0433841 | 56.250 | 224 | 97 | 1 | 25 | 247 | 41 | 264 | 2.31e-90 | 267 |
| Msa0650470 | MtrunA17_Chr5g0398271 | 55.405 | 222 | 95 | 3 | 25 | 243 | 37 | 257 | 1.15e-86 | 258 |
| Msa0650470 | MtrunA17_Chr7g0218761 | 59.701 | 201 | 77 | 2 | 44 | 242 | 8 | 206 | 5.50e-86 | 254 |
| Msa0650470 | MtrunA17_Chr4g0021561 | 52.889 | 225 | 104 | 1 | 25 | 247 | 32 | 256 | 6.23e-86 | 256 |
| Msa0650470 | MtrunA17_Chr4g0057091 | 55.605 | 223 | 93 | 4 | 25 | 243 | 36 | 256 | 2.16e-84 | 252 |
| Msa0650470 | MtrunA17_Chr8g0360721 | 56.716 | 201 | 83 | 2 | 44 | 242 | 17 | 215 | 1.49e-80 | 241 |
| Msa0650470 | MtrunA17_Chr3g0109801 | 52.586 | 232 | 101 | 5 | 25 | 247 | 53 | 284 | 2.11e-78 | 238 |
| Msa0650470 | MtrunA17_Chr2g0324191 | 48.000 | 125 | 63 | 1 | 25 | 147 | 28 | 152 | 9.77e-40 | 134 |
| Msa0650470 | MtrunA17_Chr4g0022841 | 52.991 | 117 | 55 | 0 | 129 | 245 | 1 | 117 | 5.56e-39 | 131 |
| Msa0650470 | MtrunA17_Chr4g0022851 | 64.948 | 97 | 28 | 2 | 25 | 119 | 32 | 124 | 7.09e-37 | 126 |
| Msa0650470 | MtrunA17_Chr2g0324181 | 57.426 | 101 | 43 | 0 | 147 | 247 | 17 | 117 | 1.17e-35 | 123 |
| Msa0650470 | MtrunA17_Chr2g0324221 | 30.769 | 234 | 132 | 9 | 25 | 243 | 35 | 253 | 9.80e-27 | 104 |
| Msa0650470 | MtrunA17_Chr2g0324201 | 31.197 | 234 | 131 | 10 | 25 | 243 | 33 | 251 | 1.06e-25 | 101 |
| Msa0650470 | MtrunA17_Chr7g0231221 | 32.314 | 229 | 127 | 10 | 30 | 242 | 53 | 269 | 1.66e-24 | 98.6 |
| Msa0650470 | MtrunA17_Chr4g0021641 | 31.602 | 231 | 134 | 9 | 25 | 243 | 41 | 259 | 3.93e-24 | 97.4 |
| Msa0650470 | MtrunA17_Chr4g0055601 | 29.630 | 243 | 157 | 7 | 8 | 243 | 11 | 246 | 7.62e-23 | 93.6 |
| Msa0650470 | MtrunA17_Chr8g0359981 | 54.118 | 85 | 30 | 4 | 67 | 147 | 2 | 81 | 7.82e-23 | 90.1 |
| Msa0650470 | MtrunA17_Chr8g0359971 | 54.545 | 77 | 34 | 1 | 168 | 243 | 1 | 77 | 5.49e-22 | 86.7 |
| Msa0650470 | MtrunA17_Chr4g0012801 | 29.218 | 243 | 139 | 11 | 16 | 242 | 33 | 258 | 1.33e-20 | 87.8 |
| Msa0650470 | MtrunA17_Chr7g0231211 | 29.536 | 237 | 129 | 12 | 25 | 242 | 47 | 264 | 2.91e-20 | 87.0 |
| Msa0650470 | MtrunA17_Chr4g0055561 | 27.347 | 245 | 161 | 9 | 6 | 242 | 9 | 244 | 4.61e-18 | 80.9 |
| Msa0650470 | MtrunA17_Chr5g0399811 | 26.446 | 242 | 163 | 8 | 8 | 242 | 12 | 245 | 1.22e-16 | 77.0 |
| Msa0650470 | MtrunA17_Chr1g0193571 | 60.784 | 51 | 20 | 0 | 192 | 242 | 4 | 54 | 1.28e-15 | 69.3 |
| Msa0650470 | MtrunA17_Chr4g0038741 | 28.700 | 223 | 126 | 8 | 36 | 242 | 32 | 237 | 1.98e-15 | 73.6 |
| Msa0650470 | MtrunA17_Chr4g0055061 | 29.461 | 241 | 135 | 12 | 25 | 247 | 29 | 252 | 2.63e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650470 | AT1G69530.2 | 82.329 | 249 | 42 | 2 | 1 | 247 | 1 | 249 | 6.43e-151 | 421 |
| Msa0650470 | AT1G69530.1 | 82.329 | 249 | 42 | 2 | 1 | 247 | 1 | 249 | 6.43e-151 | 421 |
| Msa0650470 | AT2G03090.1 | 78.947 | 247 | 52 | 0 | 1 | 247 | 6 | 252 | 3.83e-149 | 416 |
| Msa0650470 | AT1G69530.3 | 82.449 | 245 | 41 | 2 | 1 | 243 | 1 | 245 | 8.99e-149 | 416 |
| Msa0650470 | AT1G26770.1 | 81.855 | 248 | 44 | 1 | 1 | 247 | 1 | 248 | 2.40e-141 | 396 |
| Msa0650470 | AT1G26770.2 | 81.855 | 248 | 44 | 1 | 1 | 247 | 11 | 258 | 3.66e-141 | 396 |
| Msa0650470 | AT5G56320.1 | 72.510 | 251 | 65 | 1 | 1 | 247 | 1 | 251 | 9.11e-136 | 382 |
| Msa0650470 | AT5G56320.2 | 72.510 | 251 | 65 | 1 | 1 | 247 | 1 | 251 | 9.11e-136 | 382 |
| Msa0650470 | AT5G56320.3 | 72.510 | 251 | 65 | 1 | 1 | 247 | 1 | 251 | 5.25e-135 | 382 |
| Msa0650470 | AT2G40610.1 | 74.074 | 243 | 62 | 1 | 6 | 247 | 11 | 253 | 5.53e-135 | 380 |
| Msa0650470 | AT2G39700.1 | 69.444 | 252 | 69 | 2 | 1 | 244 | 1 | 252 | 5.24e-127 | 360 |
| Msa0650470 | AT5G05290.1 | 69.076 | 249 | 74 | 2 | 2 | 247 | 7 | 255 | 2.50e-126 | 358 |
| Msa0650470 | AT1G69530.4 | 71.888 | 249 | 38 | 3 | 1 | 247 | 1 | 219 | 3.16e-125 | 354 |
| Msa0650470 | AT1G69530.5 | 73.333 | 240 | 52 | 4 | 1 | 238 | 1 | 230 | 5.02e-125 | 355 |
| Msa0650470 | AT5G02260.1 | 67.742 | 248 | 76 | 2 | 1 | 244 | 6 | 253 | 1.40e-124 | 354 |
| Msa0650470 | AT2G37640.1 | 70.539 | 241 | 68 | 2 | 6 | 244 | 18 | 257 | 1.46e-124 | 354 |
| Msa0650470 | AT3G55500.1 | 73.333 | 225 | 58 | 1 | 22 | 244 | 31 | 255 | 3.19e-124 | 353 |
| Msa0650470 | AT3G29030.1 | 74.107 | 224 | 49 | 2 | 25 | 247 | 38 | 253 | 1.20e-119 | 342 |
| Msa0650470 | AT2G28950.1 | 66.667 | 252 | 76 | 2 | 1 | 244 | 1 | 252 | 4.01e-117 | 335 |
| Msa0650470 | AT1G20190.1 | 71.300 | 223 | 61 | 2 | 24 | 243 | 25 | 247 | 1.99e-114 | 328 |
| Msa0650470 | AT2G37640.2 | 71.707 | 205 | 56 | 1 | 42 | 244 | 28 | 232 | 9.53e-110 | 316 |
| Msa0650470 | AT4G01630.1 | 62.762 | 239 | 85 | 3 | 8 | 242 | 11 | 249 | 9.02e-107 | 309 |
| Msa0650470 | AT5G39280.1 | 56.067 | 239 | 100 | 2 | 9 | 244 | 35 | 271 | 4.27e-98 | 288 |
| Msa0650470 | AT5G39300.1 | 58.636 | 220 | 89 | 1 | 25 | 244 | 55 | 272 | 2.89e-97 | 286 |
| Msa0650470 | AT5G39270.1 | 58.182 | 220 | 90 | 1 | 25 | 244 | 58 | 275 | 1.98e-93 | 276 |
| Msa0650470 | AT5G39290.1 | 57.273 | 220 | 92 | 1 | 25 | 244 | 58 | 275 | 1.21e-92 | 274 |
| Msa0650470 | AT1G20190.2 | 68.449 | 187 | 56 | 2 | 60 | 243 | 2 | 188 | 2.71e-91 | 268 |
| Msa0650470 | AT5G39310.1 | 56.757 | 222 | 93 | 2 | 24 | 244 | 89 | 308 | 3.65e-89 | 266 |
| Msa0650470 | AT1G12560.1 | 55.217 | 230 | 100 | 3 | 15 | 242 | 27 | 255 | 2.04e-86 | 258 |
| Msa0650470 | AT1G62980.1 | 52.479 | 242 | 109 | 5 | 6 | 242 | 10 | 250 | 4.23e-85 | 254 |
| Msa0650470 | AT3G03220.1 | 52.679 | 224 | 105 | 1 | 25 | 247 | 40 | 263 | 3.91e-84 | 252 |
| Msa0650470 | AT3G15370.1 | 52.675 | 243 | 101 | 7 | 6 | 243 | 12 | 245 | 6.24e-82 | 246 |
| Msa0650470 | AT5G39260.1 | 53.846 | 221 | 94 | 2 | 25 | 244 | 45 | 258 | 8.00e-79 | 238 |
| Msa0650470 | AT4G38210.1 | 50.661 | 227 | 108 | 2 | 25 | 247 | 28 | 254 | 2.69e-78 | 237 |
| Msa0650470 | AT3G15370.2 | 47.253 | 273 | 100 | 8 | 6 | 243 | 12 | 275 | 2.39e-75 | 230 |
| Msa0650470 | AT4G28250.1 | 33.190 | 232 | 130 | 9 | 25 | 243 | 36 | 255 | 8.86e-28 | 107 |
| Msa0650470 | AT2G20750.1 | 33.047 | 233 | 132 | 9 | 25 | 243 | 40 | 262 | 4.64e-26 | 103 |
| Msa0650470 | AT4G28250.2 | 32.468 | 231 | 127 | 9 | 25 | 243 | 36 | 249 | 2.01e-24 | 98.2 |
| Msa0650470 | AT1G65680.1 | 30.901 | 233 | 134 | 10 | 25 | 242 | 47 | 267 | 7.84e-23 | 94.4 |
| Msa0650470 | AT1G65681.1 | 29.954 | 217 | 127 | 9 | 39 | 242 | 12 | 216 | 3.55e-19 | 83.6 |
| Msa0650470 | AT2G45110.1 | 28.750 | 240 | 132 | 9 | 24 | 242 | 32 | 253 | 5.79e-19 | 83.6 |
| Msa0650470 | AT4G17030.1 | 27.203 | 261 | 161 | 9 | 2 | 248 | 4 | 249 | 1.20e-18 | 82.8 |
| Msa0650470 | AT4G28250.4 | 33.143 | 175 | 90 | 7 | 25 | 189 | 36 | 193 | 7.72e-17 | 77.0 |
| Msa0650470 | AT2G20750.2 | 31.214 | 173 | 99 | 6 | 25 | 186 | 40 | 203 | 2.15e-16 | 75.9 |
| Msa0650470 | AT3G60570.1 | 25.000 | 232 | 146 | 8 | 25 | 242 | 34 | 251 | 2.27e-16 | 76.6 |
| Msa0650470 | AT4G28250.3 | 33.140 | 172 | 88 | 7 | 25 | 186 | 36 | 190 | 4.03e-16 | 75.1 |
| Msa0650470 | AT3G45970.2 | 26.147 | 218 | 138 | 10 | 43 | 247 | 14 | 221 | 5.75e-14 | 69.7 |
| Msa0650470 | AT3G45960.2 | 29.577 | 213 | 126 | 10 | 48 | 247 | 46 | 247 | 1.62e-13 | 68.6 |
| Msa0650470 | AT4G38400.1 | 27.830 | 212 | 131 | 10 | 48 | 247 | 47 | 248 | 2.06e-12 | 65.5 |
| Msa0650470 | AT3G60570.2 | 23.832 | 214 | 135 | 8 | 43 | 242 | 4 | 203 | 3.04e-12 | 64.3 |
| Msa0650470 | AT3G45970.1 | 25.352 | 213 | 136 | 10 | 48 | 247 | 46 | 248 | 2.41e-11 | 62.8 |
Find 106 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATGGCCCTTCAATTTA+TGG | 0.080320 | 4_3:+57487628 | Msa0650470:three_prime_UTR |
| CACCCGCTATATTTAGTATT+AGG | 0.190674 | 4_3:+57487803 | Msa0650470:three_prime_UTR |
| AATGCACATGCCACCTTCTA+TGG | 0.202737 | 4_3:+57486539 | Msa0650470:CDS |
| CCCTTCAATTTATGGCTCTT+TGG | 0.234819 | 4_3:+57487636 | Msa0650470:three_prime_UTR |
| GCTCCAGCTGGATGGTCTTT+TGG | 0.250334 | 4_3:+57487399 | Msa0650470:CDS |
| TTGTGGTTGAACTACTAAAT+TGG | 0.259563 | 4_3:+57487761 | Msa0650470:three_prime_UTR |
| CACCAACCACCTTGATTGTT+TGG | 0.269349 | 4_3:-57486927 | None:intergenic |
| TCCAGCTGGAGCAACATTAT+TGG | 0.273928 | 4_3:-57487388 | None:intergenic |
| GACCATAGATGGTGCCTTCC+TGG | 0.298042 | 4_3:+57486855 | Msa0650470:CDS |
| GTAGGTGGGGCTTGTGGATA+TGG | 0.300951 | 4_3:+57486726 | Msa0650470:intron |
| GGATATCTATGTCAAGAAAC+TGG | 0.302501 | 4_3:+57487280 | Msa0650470:CDS |
| AGTATTTCTAAACTTGAAAC+TGG | 0.309026 | 4_3:-57487469 | None:intergenic |
| TTCCATACCCTTGACTATAA+AGG | 0.310459 | 4_3:-57486752 | None:intergenic |
| GGCTTACATTGGCTTGCTTT+TGG | 0.310735 | 4_3:+57486463 | Msa0650470:CDS |
| ACCCGCTATATTTAGTATTA+GGG | 0.318190 | 4_3:+57487804 | Msa0650470:three_prime_UTR |
| GGTATAAGGTTCACTATTAA+TGG | 0.324866 | 4_3:+57487168 | Msa0650470:CDS |
| GTGGCTCTTGCTATGAAATT+AGG | 0.339101 | 4_3:+57486823 | Msa0650470:CDS |
| CAAGAAACTGGGGACAAAAT+TGG | 0.340071 | 4_3:+57487292 | Msa0650470:CDS |
| TTCTCCTCTGTTTATGCCTA+TGG | 0.366961 | 4_3:+57486503 | Msa0650470:CDS |
| CCCCAAACCACTCTTCTTCA+AGG | 0.370993 | 4_3:+57486202 | None:intergenic |
| CTTTGGTTATTGTGGTGTTT+CGG | 0.371280 | 4_3:+57487653 | Msa0650470:three_prime_UTR |
| TAAATTGGAGGAGGTGGAAA+TGG | 0.377719 | 4_3:+57487776 | Msa0650470:three_prime_UTR |
| TGGCTGGGTAAGGTATGTTT+TGG | 0.381554 | 4_3:+57487899 | Msa0650470:three_prime_UTR |
| TCCAATAATGTTGCTCCAGC+TGG | 0.392823 | 4_3:+57487387 | Msa0650470:CDS |
| CCCAGCCAAGGCTGATTACA+AGG | 0.393740 | 4_3:-57487884 | None:intergenic |
| AACCAGGAAGGCACCATCTA+TGG | 0.400538 | 4_3:-57486857 | None:intergenic |
| TTGTTTGGTAAGGCATTGTT+TGG | 0.404496 | 4_3:-57486912 | None:intergenic |
| ATCACAAACGTTGGTGGTGC+TGG | 0.417253 | 4_3:+57487216 | Msa0650470:CDS |
| TCCTTGTAATCAGCCTTGGC+TGG | 0.421343 | 4_3:+57487883 | Msa0650470:three_prime_UTR |
| CTCAAATCCTCTAGAGCATA+TGG | 0.422412 | 4_3:+57487439 | Msa0650470:exon |
| AACTACTAAATTGGAGGAGG+TGG | 0.430327 | 4_3:+57487770 | Msa0650470:three_prime_UTR |
| TATGGAGGAAGTGATGCTTC+AGG | 0.438776 | 4_3:+57486557 | Msa0650470:CDS |
| TTCAAGGTCTATAAATTAAG+TGG | 0.448653 | 4_3:+57486218 | Msa0650470:five_prime_UTR |
| AGCATCACTTCCTCCATAGA+AGG | 0.449496 | 4_3:-57486552 | None:intergenic |
| CTAATCCTTGTAATCAGCCT+TGG | 0.470855 | 4_3:+57487879 | Msa0650470:three_prime_UTR |
| TTATGGCTCTTTGGTTATTG+TGG | 0.473038 | 4_3:+57487645 | Msa0650470:three_prime_UTR |
| AGGGTGTCATGCAGAAGAAA+GGG | 0.474428 | 4_3:+57487144 | Msa0650470:intron |
| TAATCAGCCTTGGCTGGGTA+AGG | 0.486468 | 4_3:+57487889 | Msa0650470:three_prime_UTR |
| TAGTACCTCAATAGTATACT+AGG | 0.491481 | 4_3:+57487530 | Msa0650470:three_prime_UTR |
| ACCAAAGAGCCATAAATTGA+AGG | 0.498650 | 4_3:-57487637 | None:intergenic |
| TAGGGTGTCATGCAGAAGAA+AGG | 0.498929 | 4_3:+57487143 | Msa0650470:intron |
| GAAATTACTTTGATAGTCAA+AGG | 0.505026 | 4_3:-57486312 | None:intergenic |
| TGGTTGAACTACTAAATTGG+AGG | 0.505389 | 4_3:+57487764 | Msa0650470:three_prime_UTR |
| CAGAGCAACAATTATCTCAA+TGG | 0.508519 | 4_3:+57487315 | Msa0650470:CDS |
| AACCTTTATAGTCAAGGGTA+TGG | 0.513145 | 4_3:+57486750 | Msa0650470:CDS |
| TCTGTTTATGCCTATGGTGG+AGG | 0.513461 | 4_3:+57486509 | Msa0650470:CDS |
| CGTATTGCTCAATACAAAGC+TGG | 0.513556 | 4_3:+57486996 | Msa0650470:CDS |
| AGTGATGCTTCAGGAACAAT+GGG | 0.514794 | 4_3:+57486566 | Msa0650470:CDS |
| TCCTCTGTTTATGCCTATGG+TGG | 0.517540 | 4_3:+57486506 | Msa0650470:CDS |
| AATATCCTAGTATACTATTG+AGG | 0.517752 | 4_3:-57487535 | None:intergenic |
| ACCACCTTGATTGTTTGGTA+AGG | 0.522218 | 4_3:-57486922 | None:intergenic |
| TTTGGTAAGGCATTGTTTGG+AGG | 0.522270 | 4_3:-57486909 | None:intergenic |
| GTTGAGCAAGATCAAAATGT+TGG | 0.527634 | 4_3:-57486962 | None:intergenic |
| TTTAAGGTTACAACTAGTGA+TGG | 0.529102 | 4_3:+57487351 | Msa0650470:CDS |
| ACCTACCTTCTAAAATCTAC+AGG | 0.533353 | 4_3:-57487026 | None:intergenic |
| AAACAGGAAATGGCTTACAT+TGG | 0.533906 | 4_3:+57486452 | Msa0650470:intron |
| GTTCTTATCACAAACGTTGG+TGG | 0.543313 | 4_3:+57487210 | Msa0650470:CDS |
| TACATGCTGCATCCATCAAA+GGG | 0.543754 | 4_3:+57487244 | Msa0650470:CDS |
| TATGGTAACCTTTATAGTCA+AGG | 0.546440 | 4_3:+57486744 | Msa0650470:CDS |
| TTCAACAATGGCTTAAGCTG+TGG | 0.546607 | 4_3:+57486804 | Msa0650470:CDS |
| GATCAAAATGTTGGAGAGGA+GGG | 0.550651 | 4_3:-57486953 | None:intergenic |
| GTTTGGAGGACAGAAATTTG+TGG | 0.554497 | 4_3:-57486895 | None:intergenic |
| CCAAAGAGCCATAAATTGAA+GGG | 0.556186 | 4_3:-57487636 | None:intergenic |
| AAGTGATGCTTCAGGAACAA+TGG | 0.556486 | 4_3:+57486565 | Msa0650470:CDS |
| ATATTAAATAGTATGCTGCT+AGG | 0.557428 | 4_3:+57487553 | Msa0650470:three_prime_UTR |
| TATTAAATAGTATGCTGCTA+GGG | 0.560427 | 4_3:+57487554 | Msa0650470:three_prime_UTR |
| CTAATATAGATGTTAGCAGA+AGG | 0.562363 | 4_3:+57487719 | Msa0650470:three_prime_UTR |
| TGTGAAGTGAAGAGTGTTGG+TGG | 0.564670 | 4_3:-57486246 | None:intergenic |
| CCTTGTAATCAGCCTTGGCT+GGG | 0.566017 | 4_3:+57487884 | Msa0650470:three_prime_UTR |
| GTACATGCTGCATCCATCAA+AGG | 0.567778 | 4_3:+57487243 | Msa0650470:CDS |
| TGACCAAAAGACCATCCAGC+TGG | 0.568697 | 4_3:-57487402 | None:intergenic |
| GATATCTATGTCAAGAAACT+GGG | 0.570919 | 4_3:+57487281 | Msa0650470:CDS |
| TTTATGCCTATGGTGGAGGA+TGG | 0.581237 | 4_3:+57486513 | Msa0650470:CDS |
| AGATCAAAATGTTGGAGAGG+AGG | 0.586254 | 4_3:-57486954 | None:intergenic |
| AATTTGACCATATGCTCTAG+AGG | 0.586262 | 4_3:-57487446 | None:intergenic |
| ACCCTAATACTAAATATAGC+GGG | 0.586746 | 4_3:-57487805 | None:intergenic |
| ATGGTAACCTTTATAGTCAA+GGG | 0.589746 | 4_3:+57486745 | Msa0650470:CDS |
| ATAATGTTGCTCCAGCTGGA+TGG | 0.590574 | 4_3:+57487391 | Msa0650470:CDS |
| GTGCCTTCCTGGTTCCATTG+TGG | 0.591922 | 4_3:+57486866 | Msa0650470:CDS |
| TACCAAACAATCAAGGTGGT+TGG | 0.598522 | 4_3:+57486925 | Msa0650470:CDS |
| ATTAGTCCATCCTCCACCAT+AGG | 0.598598 | 4_3:-57486519 | None:intergenic |
| GCAGTGACCACAATGGAACC+AGG | 0.602351 | 4_3:-57486873 | None:intergenic |
| TTAGTTCTTATCACAAACGT+TGG | 0.605020 | 4_3:+57487207 | Msa0650470:CDS |
| GGGTGTCATGCAGAAGAAAG+GGG | 0.608021 | 4_3:+57487145 | Msa0650470:intron |
| AATGCCTTACCAAACAATCA+AGG | 0.612141 | 4_3:+57486918 | Msa0650470:CDS |
| ATATTAGCAGAGCAGCAGAA+TGG | 0.618183 | 4_3:-57487703 | None:intergenic |
| GAGGATTTGAGCACCAGTGT+AGG | 0.625146 | 4_3:-57487427 | None:intergenic |
| GGTGTGCTAATGACCATAGA+TGG | 0.625411 | 4_3:+57486844 | Msa0650470:CDS |
| ATGTGTGAAGTGAAGAGTGT+TGG | 0.627130 | 4_3:-57486249 | None:intergenic |
| GGTGTCATGCAGAAGAAAGG+GGG | 0.628611 | 4_3:+57487146 | Msa0650470:CDS |
| AAACATACCTTACCCAGCCA+AGG | 0.637920 | 4_3:-57487896 | None:intergenic |
| TTGAACTACTAAATTGGAGG+AGG | 0.638601 | 4_3:+57487767 | Msa0650470:three_prime_UTR |
| TAATATAGATGTTAGCAGAA+GGG | 0.640329 | 4_3:+57487720 | Msa0650470:three_prime_UTR |
| GCAAGATCAAAATGTTGGAG+AGG | 0.641783 | 4_3:-57486957 | None:intergenic |
| ATCACTTCCTCCATAGAAGG+TGG | 0.643748 | 4_3:-57486549 | None:intergenic |
| GCACATGCCACCTTCTATGG+AGG | 0.644186 | 4_3:+57486542 | Msa0650470:CDS |
| TACCCTAATACTAAATATAG+CGG | 0.647079 | 4_3:-57487806 | None:intergenic |
| GAAAAGTGCTGTACTCAAAG+CGG | 0.652141 | 4_3:-57486784 | None:intergenic |
| GTGAAGTGAAGAGTGTTGGT+GGG | 0.657415 | 4_3:-57486245 | None:intergenic |
| CTAATACTAAATATAGCGGG+TGG | 0.673805 | 4_3:-57487802 | None:intergenic |
| TGACCACAATGGAACCAGGA+AGG | 0.676921 | 4_3:-57486869 | None:intergenic |
| ATTTGTGGCAGTGACCACAA+TGG | 0.706109 | 4_3:-57486880 | None:intergenic |
| ATATCTATGTCAAGAAACTG+GGG | 0.706710 | 4_3:+57487282 | Msa0650470:CDS |
| GTGTCATGCAGAAGAAAGGG+GGG | 0.710137 | 4_3:+57487147 | Msa0650470:CDS |
| GCCTTACCAAACAATCAAGG+TGG | 0.713350 | 4_3:+57486921 | Msa0650470:CDS |
| TCCACCATAGGCATAAACAG+AGG | 0.739179 | 4_3:-57486507 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCAATTTTTTTGTATT+TGG | + | chr4_3:57487082-57487101 | Msa0650470:intron | 10.0% |
| !!! | CACATTTTAGTACATAAATT+TGG | - | chr4_3:57486392-57486411 | None:intergenic | 20.0% |
| !!! | TAGTGGTTTTTATTGAAAAA+TGG | - | chr4_3:57486598-57486617 | None:intergenic | 20.0% |
| !! | ATATAAAAAATGTAGATGCT+TGG | - | chr4_3:57487060-57487079 | None:intergenic | 20.0% |
| !!! | ACTAATTTGTGTTTTTATTG+CGG | + | chr4_3:57487110-57487129 | Msa0650470:intron | 20.0% |
| !!! | ACTTTTTCTTTATATCTTTG+TGG | + | chr4_3:57487744-57487763 | Msa0650470:three_prime_UTR | 20.0% |
| !!! | ATCCTTTTAGTTTTTCATTT+TGG | + | chr4_3:57487831-57487850 | Msa0650470:three_prime_UTR | 20.0% |
| !!! | TCCTTTTAGTTTTTCATTTT+GGG | + | chr4_3:57487832-57487851 | Msa0650470:three_prime_UTR | 20.0% |
| ! | TTCAAGGTCTATAAATTAAG+TGG | + | chr4_3:57486218-57486237 | Msa0650470:five_prime_UTR | 25.0% |
| !! | GAAATTACTTTGATAGTCAA+AGG | - | chr4_3:57486315-57486334 | None:intergenic | 25.0% |
| ! | ATGTACTAAAATGTGTTACA+AGG | + | chr4_3:57486397-57486416 | Msa0650470:intron | 25.0% |
| !!! | TTTGTTTTGTACATTGAAAC+AGG | + | chr4_3:57486436-57486455 | Msa0650470:intron | 25.0% |
| !! | CAAAACTTTATTTCAAGTAG+TGG | - | chr4_3:57486615-57486634 | None:intergenic | 25.0% |
| !! | AGTATTTCTAAACTTGAAAC+TGG | - | chr4_3:57487472-57487491 | None:intergenic | 25.0% |
| ! | AATATCCTAGTATACTATTG+AGG | - | chr4_3:57487538-57487557 | None:intergenic | 25.0% |
| ! | ATATTAAATAGTATGCTGCT+AGG | + | chr4_3:57487553-57487572 | Msa0650470:three_prime_UTR | 25.0% |
| ! | TATTAAATAGTATGCTGCTA+GGG | + | chr4_3:57487554-57487573 | Msa0650470:three_prime_UTR | 25.0% |
| !!! | TTTGTTTTTGGTTGTTTTAG+AGG | + | chr4_3:57487587-57487606 | Msa0650470:three_prime_UTR | 25.0% |
| !!! | TTTTAAAATATGCCCTTCAT+TGG | - | chr4_3:57487613-57487632 | None:intergenic | 25.0% |
| !!! | ATGAAGGGCATATTTTAAAA+TGG | + | chr4_3:57487613-57487632 | Msa0650470:three_prime_UTR | 25.0% |
| ! | TAATATAGATGTTAGCAGAA+GGG | + | chr4_3:57487720-57487739 | Msa0650470:three_prime_UTR | 25.0% |
| ! | TACCCTAATACTAAATATAG+CGG | - | chr4_3:57487809-57487828 | None:intergenic | 25.0% |
| ! | TCCCAAAATGAAAAACTAAA+AGG | - | chr4_3:57487836-57487855 | None:intergenic | 25.0% |
| TTGTACATTGAAACAGGAAA+TGG | + | chr4_3:57486442-57486461 | Msa0650470:intron | 30.0% | |
| AACAACAAAGTCAGTGAAAT+GGG | - | chr4_3:57486700-57486719 | None:intergenic | 30.0% | |
| AAACAACAAAGTCAGTGAAA+TGG | - | chr4_3:57486701-57486720 | None:intergenic | 30.0% | |
| !!! | GACTTTGTTGTTTTTTGTGT+AGG | + | chr4_3:57486708-57486727 | Msa0650470:intron | 30.0% |
| !!! | TTTGTTGTTTTTTGTGTAGG+TGG | + | chr4_3:57486711-57486730 | Msa0650470:intron | 30.0% |
| !!! | TTGTTGTTTTTTGTGTAGGT+GGG | + | chr4_3:57486712-57486731 | Msa0650470:intron | 30.0% |
| TATGGTAACCTTTATAGTCA+AGG | + | chr4_3:57486744-57486763 | Msa0650470:CDS | 30.0% | |
| ATGGTAACCTTTATAGTCAA+GGG | + | chr4_3:57486745-57486764 | Msa0650470:CDS | 30.0% | |
| ! | TTGTTCCTGTAGATTTTAGA+AGG | + | chr4_3:57487021-57487040 | Msa0650470:CDS | 30.0% |
| GGTATAAGGTTCACTATTAA+TGG | + | chr4_3:57487168-57487187 | Msa0650470:CDS | 30.0% | |
| ! | TTAGTTCTTATCACAAACGT+TGG | + | chr4_3:57487207-57487226 | Msa0650470:CDS | 30.0% |
| GATATCTATGTCAAGAAACT+GGG | + | chr4_3:57487281-57487300 | Msa0650470:CDS | 30.0% | |
| ATATCTATGTCAAGAAACTG+GGG | + | chr4_3:57487282-57487301 | Msa0650470:CDS | 30.0% | |
| ! | TGGTCAAAGTTTGTCTTTTA+AGG | + | chr4_3:57487335-57487354 | Msa0650470:CDS | 30.0% |
| ! | TTTAAGGTTACAACTAGTGA+TGG | + | chr4_3:57487351-57487370 | Msa0650470:CDS | 30.0% |
| TAGTACCTCAATAGTATACT+AGG | + | chr4_3:57487530-57487549 | Msa0650470:three_prime_UTR | 30.0% | |
| !! | GGAAAAAATGGGTTTGTTTT+TGG | + | chr4_3:57487575-57487594 | Msa0650470:three_prime_UTR | 30.0% |
| TAAAATGGCCCTTCAATTTA+TGG | + | chr4_3:57487628-57487647 | Msa0650470:three_prime_UTR | 30.0% | |
| CTAATATAGATGTTAGCAGA+AGG | + | chr4_3:57487719-57487738 | Msa0650470:three_prime_UTR | 30.0% | |
| TTGTGGTTGAACTACTAAAT+TGG | + | chr4_3:57487761-57487780 | Msa0650470:three_prime_UTR | 30.0% | |
| ACCCGCTATATTTAGTATTA+GGG | + | chr4_3:57487804-57487823 | Msa0650470:three_prime_UTR | 30.0% | |
| ACCCTAATACTAAATATAGC+GGG | - | chr4_3:57487808-57487827 | None:intergenic | 30.0% | |
| !!! | AAGGTATGTTTTGGTTGTAT+TGG | + | chr4_3:57487908-57487927 | Msa0650470:three_prime_UTR | 30.0% |
| !!! | AGGTATGTTTTGGTTGTATT+GGG | + | chr4_3:57487909-57487928 | Msa0650470:three_prime_UTR | 30.0% |
| ATGAAGGAGCAATGTGAAAA+AGG | - | chr4_3:57486337-57486356 | None:intergenic | 35.0% | |
| GAACTTTAGCATTCAGATGA+AGG | - | chr4_3:57486353-57486372 | None:intergenic | 35.0% | |
| AAACAGGAAATGGCTTACAT+TGG | + | chr4_3:57486452-57486471 | Msa0650470:intron | 35.0% | |
| !!! | TGTTGTTTTTTGTGTAGGTG+GGG | + | chr4_3:57486713-57486732 | Msa0650470:intron | 35.0% |
| AACCTTTATAGTCAAGGGTA+TGG | + | chr4_3:57486750-57486769 | Msa0650470:CDS | 35.0% | |
| TTCCATACCCTTGACTATAA+AGG | - | chr4_3:57486755-57486774 | None:intergenic | 35.0% | |
| ! | AGTACAGCACTTTTCAACAA+TGG | + | chr4_3:57486792-57486811 | Msa0650470:CDS | 35.0% |
| !! | TTGTTTGGTAAGGCATTGTT+TGG | - | chr4_3:57486915-57486934 | None:intergenic | 35.0% |
| AATGCCTTACCAAACAATCA+AGG | + | chr4_3:57486918-57486937 | Msa0650470:CDS | 35.0% | |
| GTTGAGCAAGATCAAAATGT+TGG | - | chr4_3:57486965-57486984 | None:intergenic | 35.0% | |
| TGAGCAATACGAAGAAAAAC+AGG | - | chr4_3:57486987-57487006 | None:intergenic | 35.0% | |
| !! | TCCTGTAGATTTTAGAAGGT+AGG | + | chr4_3:57487025-57487044 | Msa0650470:intron | 35.0% |
| !! | ACCTACCTTCTAAAATCTAC+AGG | - | chr4_3:57487029-57487048 | None:intergenic | 35.0% |
| TTATTGCGGTGAATTTGTGT+AGG | + | chr4_3:57487124-57487143 | Msa0650470:intron | 35.0% | |
| TATTGCGGTGAATTTGTGTA+GGG | + | chr4_3:57487125-57487144 | Msa0650470:intron | 35.0% | |
| GGATATCTATGTCAAGAAAC+TGG | + | chr4_3:57487280-57487299 | Msa0650470:CDS | 35.0% | |
| CAGAGCAACAATTATCTCAA+TGG | + | chr4_3:57487315-57487334 | Msa0650470:CDS | 35.0% | |
| AATTTGACCATATGCTCTAG+AGG | - | chr4_3:57487449-57487468 | None:intergenic | 35.0% | |
| TATGCTGCTAGGGAAAAAAT+GGG | + | chr4_3:57487564-57487583 | Msa0650470:three_prime_UTR | 35.0% | |
| !!! | TTGTTTTAGAGGCCAATGAA+GGG | + | chr4_3:57487598-57487617 | Msa0650470:three_prime_UTR | 35.0% |
| CCAAAGAGCCATAAATTGAA+GGG | - | chr4_3:57487639-57487658 | None:intergenic | 35.0% | |
| ACCAAAGAGCCATAAATTGA+AGG | - | chr4_3:57487640-57487659 | None:intergenic | 35.0% | |
| TTATGGCTCTTTGGTTATTG+TGG | + | chr4_3:57487645-57487664 | Msa0650470:three_prime_UTR | 35.0% | |
| CTTTGGTTATTGTGGTGTTT+CGG | + | chr4_3:57487653-57487672 | Msa0650470:three_prime_UTR | 35.0% | |
| TGGTTGAACTACTAAATTGG+AGG | + | chr4_3:57487764-57487783 | Msa0650470:three_prime_UTR | 35.0% | |
| TTGAACTACTAAATTGGAGG+AGG | + | chr4_3:57487767-57487786 | Msa0650470:three_prime_UTR | 35.0% | |
| ! | CTAATACTAAATATAGCGGG+TGG | - | chr4_3:57487805-57487824 | None:intergenic | 35.0% |
| CACCCGCTATATTTAGTATT+AGG | + | chr4_3:57487803-57487822 | Msa0650470:three_prime_UTR | 35.0% | |
| !!! | GGTATGTTTTGGTTGTATTG+GGG | + | chr4_3:57487910-57487929 | Msa0650470:three_prime_UTR | 35.0% |
| ! | ATGTGTGAAGTGAAGAGTGT+TGG | - | chr4_3:57486252-57486271 | None:intergenic | 40.0% |
| TTCTCCTCTGTTTATGCCTA+TGG | + | chr4_3:57486503-57486522 | Msa0650470:CDS | 40.0% | |
| AAGTGATGCTTCAGGAACAA+TGG | + | chr4_3:57486565-57486584 | Msa0650470:CDS | 40.0% | |
| AGTGATGCTTCAGGAACAAT+GGG | + | chr4_3:57486566-57486585 | Msa0650470:CDS | 40.0% | |
| !! | GAAAAGTGCTGTACTCAAAG+CGG | - | chr4_3:57486787-57486806 | None:intergenic | 40.0% |
| TTCAACAATGGCTTAAGCTG+TGG | + | chr4_3:57486804-57486823 | Msa0650470:CDS | 40.0% | |
| ! | GTGGCTCTTGCTATGAAATT+AGG | + | chr4_3:57486823-57486842 | Msa0650470:CDS | 40.0% |
| GTTTGGAGGACAGAAATTTG+TGG | - | chr4_3:57486898-57486917 | None:intergenic | 40.0% | |
| !! | TTTGGTAAGGCATTGTTTGG+AGG | - | chr4_3:57486912-57486931 | None:intergenic | 40.0% |
| ACCACCTTGATTGTTTGGTA+AGG | - | chr4_3:57486925-57486944 | None:intergenic | 40.0% | |
| TACCAAACAATCAAGGTGGT+TGG | + | chr4_3:57486925-57486944 | Msa0650470:CDS | 40.0% | |
| GATCAAAATGTTGGAGAGGA+GGG | - | chr4_3:57486956-57486975 | None:intergenic | 40.0% | |
| AGATCAAAATGTTGGAGAGG+AGG | - | chr4_3:57486957-57486976 | None:intergenic | 40.0% | |
| GCAAGATCAAAATGTTGGAG+AGG | - | chr4_3:57486960-57486979 | None:intergenic | 40.0% | |
| CGTATTGCTCAATACAAAGC+TGG | + | chr4_3:57486996-57487015 | Msa0650470:CDS | 40.0% | |
| GTTCTTATCACAAACGTTGG+TGG | + | chr4_3:57487210-57487229 | Msa0650470:CDS | 40.0% | |
| TACATGCTGCATCCATCAAA+GGG | + | chr4_3:57487244-57487263 | Msa0650470:CDS | 40.0% | |
| TCCATCAAAGGGTCAAAAAC+TGG | + | chr4_3:57487255-57487274 | Msa0650470:CDS | 40.0% | |
| ! | ACCAGTTTTTGACCCTTTGA+TGG | - | chr4_3:57487259-57487278 | None:intergenic | 40.0% |
| TCAAAGGGTCAAAAACTGGT+TGG | + | chr4_3:57487259-57487278 | Msa0650470:CDS | 40.0% | |
| CAAGAAACTGGGGACAAAAT+TGG | + | chr4_3:57487292-57487311 | Msa0650470:CDS | 40.0% | |
| ! | TCTTTTGGTCAAACCTACAC+TGG | + | chr4_3:57487414-57487433 | Msa0650470:CDS | 40.0% |
| !! | CTCAAATCCTCTAGAGCATA+TGG | + | chr4_3:57487439-57487458 | Msa0650470:exon | 40.0% |
| GTATGCTGCTAGGGAAAAAA+TGG | + | chr4_3:57487563-57487582 | Msa0650470:three_prime_UTR | 40.0% | |
| !!! | GTTGTTTTAGAGGCCAATGA+AGG | + | chr4_3:57487597-57487616 | Msa0650470:three_prime_UTR | 40.0% |
| CCCTTCAATTTATGGCTCTT+TGG | + | chr4_3:57487636-57487655 | Msa0650470:three_prime_UTR | 40.0% | |
| ATATTAGCAGAGCAGCAGAA+TGG | - | chr4_3:57487706-57487725 | None:intergenic | 40.0% | |
| AACTACTAAATTGGAGGAGG+TGG | + | chr4_3:57487770-57487789 | Msa0650470:three_prime_UTR | 40.0% | |
| TAAATTGGAGGAGGTGGAAA+TGG | + | chr4_3:57487776-57487795 | Msa0650470:three_prime_UTR | 40.0% | |
| CTAATCCTTGTAATCAGCCT+TGG | + | chr4_3:57487879-57487898 | Msa0650470:three_prime_UTR | 40.0% | |
| !! | GTGAAGTGAAGAGTGTTGGT+GGG | - | chr4_3:57486248-57486267 | None:intergenic | 45.0% |
| !! | TGTGAAGTGAAGAGTGTTGG+TGG | - | chr4_3:57486249-57486268 | None:intergenic | 45.0% |
| !!! | GGCTTACATTGGCTTGCTTT+TGG | + | chr4_3:57486463-57486482 | Msa0650470:CDS | 45.0% |
| TCCTCTGTTTATGCCTATGG+TGG | + | chr4_3:57486506-57486525 | Msa0650470:CDS | 45.0% | |
| TCCACCATAGGCATAAACAG+AGG | - | chr4_3:57486510-57486529 | None:intergenic | 45.0% | |
| TCTGTTTATGCCTATGGTGG+AGG | + | chr4_3:57486509-57486528 | Msa0650470:CDS | 45.0% | |
| ! | TTTATGCCTATGGTGGAGGA+TGG | + | chr4_3:57486513-57486532 | Msa0650470:CDS | 45.0% |
| ATTAGTCCATCCTCCACCAT+AGG | - | chr4_3:57486522-57486541 | None:intergenic | 45.0% | |
| AATGCACATGCCACCTTCTA+TGG | + | chr4_3:57486539-57486558 | Msa0650470:CDS | 45.0% | |
| ATCACTTCCTCCATAGAAGG+TGG | - | chr4_3:57486552-57486571 | None:intergenic | 45.0% | |
| AGCATCACTTCCTCCATAGA+AGG | - | chr4_3:57486555-57486574 | None:intergenic | 45.0% | |
| TATGGAGGAAGTGATGCTTC+AGG | + | chr4_3:57486557-57486576 | Msa0650470:CDS | 45.0% | |
| GGTGTGCTAATGACCATAGA+TGG | + | chr4_3:57486844-57486863 | Msa0650470:CDS | 45.0% | |
| ATTTGTGGCAGTGACCACAA+TGG | - | chr4_3:57486883-57486902 | None:intergenic | 45.0% | |
| GCCTTACCAAACAATCAAGG+TGG | + | chr4_3:57486921-57486940 | Msa0650470:CDS | 45.0% | |
| CACCAACCACCTTGATTGTT+TGG | - | chr4_3:57486930-57486949 | None:intergenic | 45.0% | |
| ! | TAGGGTGTCATGCAGAAGAA+AGG | + | chr4_3:57487143-57487162 | Msa0650470:intron | 45.0% |
| ! | AGGGTGTCATGCAGAAGAAA+GGG | + | chr4_3:57487144-57487163 | Msa0650470:intron | 45.0% |
| GTACATGCTGCATCCATCAA+AGG | + | chr4_3:57487243-57487262 | Msa0650470:CDS | 45.0% | |
| TCCAATAATGTTGCTCCAGC+TGG | + | chr4_3:57487387-57487406 | Msa0650470:CDS | 45.0% | |
| TCCAGCTGGAGCAACATTAT+TGG | - | chr4_3:57487391-57487410 | None:intergenic | 45.0% | |
| ATAATGTTGCTCCAGCTGGA+TGG | + | chr4_3:57487391-57487410 | Msa0650470:CDS | 45.0% | |
| AAACATACCTTACCCAGCCA+AGG | - | chr4_3:57487899-57487918 | None:intergenic | 45.0% | |
| ! | TGGCTGGGTAAGGTATGTTT+TGG | + | chr4_3:57487899-57487918 | Msa0650470:three_prime_UTR | 45.0% |
| ! | TTTTGTGTAGGTGGGGCTTG+TGG | + | chr4_3:57486720-57486739 | Msa0650470:intron | 50.0% |
| !! | AACCAGGAAGGCACCATCTA+TGG | - | chr4_3:57486860-57486879 | None:intergenic | 50.0% |
| TGACCACAATGGAACCAGGA+AGG | - | chr4_3:57486872-57486891 | None:intergenic | 50.0% | |
| ! | GGGTGTCATGCAGAAGAAAG+GGG | + | chr4_3:57487145-57487164 | Msa0650470:intron | 50.0% |
| ! | GGTGTCATGCAGAAGAAAGG+GGG | + | chr4_3:57487146-57487165 | Msa0650470:CDS | 50.0% |
| GTGTCATGCAGAAGAAAGGG+GGG | + | chr4_3:57487147-57487166 | Msa0650470:CDS | 50.0% | |
| ! | GCAGAAGAAAGGGGGGTATA+AGG | + | chr4_3:57487154-57487173 | Msa0650470:CDS | 50.0% |
| !! | ATCACAAACGTTGGTGGTGC+TGG | + | chr4_3:57487216-57487235 | Msa0650470:CDS | 50.0% |
| TGACCAAAAGACCATCCAGC+TGG | - | chr4_3:57487405-57487424 | None:intergenic | 50.0% | |
| GAGGATTTGAGCACCAGTGT+AGG | - | chr4_3:57487430-57487449 | None:intergenic | 50.0% | |
| TCCTTGTAATCAGCCTTGGC+TGG | + | chr4_3:57487883-57487902 | Msa0650470:three_prime_UTR | 50.0% | |
| CCTTGTAATCAGCCTTGGCT+GGG | + | chr4_3:57487884-57487903 | Msa0650470:three_prime_UTR | 50.0% | |
| TAATCAGCCTTGGCTGGGTA+AGG | + | chr4_3:57487889-57487908 | Msa0650470:three_prime_UTR | 50.0% | |
| GCACATGCCACCTTCTATGG+AGG | + | chr4_3:57486542-57486561 | Msa0650470:CDS | 55.0% | |
| GTAGGTGGGGCTTGTGGATA+TGG | + | chr4_3:57486726-57486745 | Msa0650470:intron | 55.0% | |
| GACCATAGATGGTGCCTTCC+TGG | + | chr4_3:57486855-57486874 | Msa0650470:CDS | 55.0% | |
| GTGCCTTCCTGGTTCCATTG+TGG | + | chr4_3:57486866-57486885 | Msa0650470:CDS | 55.0% | |
| GCAGTGACCACAATGGAACC+AGG | - | chr4_3:57486876-57486895 | None:intergenic | 55.0% | |
| ! | GCTCCAGCTGGATGGTCTTT+TGG | + | chr4_3:57487399-57487418 | Msa0650470:CDS | 55.0% |
| CCCAGCCAAGGCTGATTACA+AGG | - | chr4_3:57487887-57487906 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 57486217 | 57487995 | 57486217 | ID=Msa0650470;Name=Msa0650470 |
| chr4_3 | mRNA | 57486217 | 57487995 | 57486217 | ID=Msa0650470-mRNA-1;Parent=Msa0650470;Name=Msa0650470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=113|1|1|1|0.66|0.5|4|543|248 |
| chr4_3 | exon | 57486217 | 57486326 | 57486217 | ID=Msa0650470-mRNA-1:exon:15076;Parent=Msa0650470-mRNA-1 |
| chr4_3 | exon | 57486458 | 57486587 | 57486458 | ID=Msa0650470-mRNA-1:exon:15077;Parent=Msa0650470-mRNA-1 |
| chr4_3 | exon | 57486730 | 57487042 | 57486730 | ID=Msa0650470-mRNA-1:exon:15078;Parent=Msa0650470-mRNA-1 |
| chr4_3 | exon | 57487146 | 57487995 | 57487146 | ID=Msa0650470-mRNA-1:exon:15079;Parent=Msa0650470-mRNA-1 |
| chr4_3 | five_prime_UTR | 57486217 | 57486326 | 57486217 | ID=Msa0650470-mRNA-1:five_prime_utr;Parent=Msa0650470-mRNA-1 |
| chr4_3 | five_prime_UTR | 57486458 | 57486460 | 57486458 | ID=Msa0650470-mRNA-1:five_prime_utr;Parent=Msa0650470-mRNA-1 |
| chr4_3 | CDS | 57486461 | 57486587 | 57486461 | ID=Msa0650470-mRNA-1:cds;Parent=Msa0650470-mRNA-1 |
| chr4_3 | CDS | 57486730 | 57487042 | 57486730 | ID=Msa0650470-mRNA-1:cds;Parent=Msa0650470-mRNA-1 |
| chr4_3 | CDS | 57487146 | 57487452 | 57487146 | ID=Msa0650470-mRNA-1:cds;Parent=Msa0650470-mRNA-1 |
| chr4_3 | three_prime_UTR | 57487453 | 57487995 | 57487453 | ID=Msa0650470-mRNA-1:three_prime_utr;Parent=Msa0650470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
