Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144510 | XP_024638848.1 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 1.68e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144510 | sp|Q9C554|EXPA1_ARATH | 82.329 | 249 | 42 | 2 | 1 | 247 | 1 | 249 | 6.33e-150 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144510 | I3S2Q1 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 8.04e-180 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609690 | Msa1144510 | 0.810737 | 9.935298e-51 | -8.615850e-47 |
| Msa0650470 | Msa1144510 | 0.982135 | 2.557379e-154 | -8.615850e-47 |
| Msa0689520 | Msa1144510 | 0.810269 | 1.253744e-50 | -8.615850e-47 |
| Msa0692280 | Msa1144510 | 0.805551 | 1.264061e-49 | -8.615850e-47 |
| Msa1018690 | Msa1144510 | 0.815168 | 1.061734e-51 | -8.615850e-47 |
| Msa1020670 | Msa1144510 | 0.813431 | 2.568631e-51 | -8.615850e-47 |
| Msa1045140 | Msa1144510 | 0.801405 | 9.144547e-49 | -8.615850e-47 |
| Msa0292330 | Msa1144510 | 0.810545 | 1.092751e-50 | -8.615850e-47 |
| Msa1144510 | Msa1223470 | 0.810618 | 1.053739e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144510 | MtrunA17_Chr4g0042521 | 98.790 | 248 | 3 | 0 | 1 | 248 | 1 | 248 | 0.0 | 503 |
| Msa1144510 | MtrunA17_Chr5g0417701 | 86.235 | 247 | 34 | 0 | 1 | 247 | 1 | 247 | 1.36e-163 | 452 |
| Msa1144510 | MtrunA17_Chr3g0128791 | 80.165 | 242 | 48 | 0 | 6 | 247 | 12 | 253 | 2.65e-146 | 409 |
| Msa1144510 | MtrunA17_Chr3g0128801 | 80.165 | 242 | 48 | 0 | 6 | 247 | 12 | 253 | 5.65e-146 | 408 |
| Msa1144510 | MtrunA17_Chr3g0092071 | 82.051 | 234 | 42 | 0 | 14 | 247 | 14 | 247 | 1.68e-144 | 404 |
| Msa1144510 | MtrunA17_Chr5g0432611 | 77.143 | 245 | 55 | 1 | 4 | 247 | 7 | 251 | 1.50e-139 | 392 |
| Msa1144510 | MtrunA17_Chr3g0107311 | 76.923 | 247 | 57 | 0 | 1 | 247 | 8 | 254 | 6.58e-136 | 382 |
| Msa1144510 | MtrunA17_Chr3g0107291 | 76.210 | 248 | 57 | 2 | 1 | 247 | 14 | 260 | 4.25e-134 | 378 |
| Msa1144510 | MtrunA17_Chr7g0217661 | 74.699 | 249 | 52 | 3 | 1 | 247 | 1 | 240 | 8.54e-133 | 374 |
| Msa1144510 | MtrunA17_Chr5g0435311 | 70.732 | 246 | 69 | 2 | 1 | 244 | 59 | 303 | 1.76e-127 | 363 |
| Msa1144510 | MtrunA17_Chr7g0238681 | 68.379 | 253 | 71 | 3 | 1 | 244 | 1 | 253 | 1.58e-123 | 351 |
| Msa1144510 | MtrunA17_Chr2g0328261 | 69.048 | 252 | 68 | 4 | 1 | 244 | 6 | 255 | 3.49e-123 | 350 |
| Msa1144510 | MtrunA17_Chr6g0453341 | 74.502 | 251 | 53 | 3 | 1 | 248 | 11 | 253 | 1.01e-122 | 349 |
| Msa1144510 | MtrunA17_Chr4g0031621 | 66.400 | 250 | 77 | 3 | 1 | 244 | 5 | 253 | 1.64e-114 | 328 |
| Msa1144510 | MtrunA17_Chr1g0193631 | 64.502 | 231 | 78 | 3 | 16 | 242 | 21 | 251 | 3.36e-107 | 310 |
| Msa1144510 | MtrunA17_Chr1g0157061 | 65.581 | 215 | 71 | 2 | 32 | 243 | 22 | 236 | 1.68e-104 | 302 |
| Msa1144510 | MtrunA17_Chr7g0271001 | 60.408 | 245 | 88 | 4 | 7 | 242 | 4 | 248 | 2.59e-104 | 302 |
| Msa1144510 | MtrunA17_Chr4g0069711 | 57.778 | 225 | 90 | 3 | 23 | 244 | 59 | 281 | 4.97e-97 | 285 |
| Msa1144510 | MtrunA17_Chr7g0218741 | 55.731 | 253 | 103 | 4 | 1 | 246 | 1 | 251 | 7.44e-95 | 278 |
| Msa1144510 | MtrunA17_Chr7g0218751 | 58.108 | 222 | 89 | 2 | 25 | 244 | 28 | 247 | 2.16e-91 | 270 |
| Msa1144510 | MtrunA17_Chr8g0360041 | 57.399 | 223 | 91 | 2 | 25 | 245 | 31 | 251 | 2.49e-91 | 270 |
| Msa1144510 | MtrunA17_Chr5g0433841 | 56.250 | 224 | 97 | 1 | 25 | 247 | 41 | 264 | 2.31e-90 | 267 |
| Msa1144510 | MtrunA17_Chr5g0398271 | 55.405 | 222 | 95 | 3 | 25 | 243 | 37 | 257 | 1.15e-86 | 258 |
| Msa1144510 | MtrunA17_Chr7g0218761 | 59.701 | 201 | 77 | 2 | 44 | 242 | 8 | 206 | 5.50e-86 | 254 |
| Msa1144510 | MtrunA17_Chr4g0021561 | 52.889 | 225 | 104 | 1 | 25 | 247 | 32 | 256 | 6.23e-86 | 256 |
| Msa1144510 | MtrunA17_Chr4g0057091 | 55.605 | 223 | 93 | 4 | 25 | 243 | 36 | 256 | 2.16e-84 | 252 |
| Msa1144510 | MtrunA17_Chr8g0360721 | 56.716 | 201 | 83 | 2 | 44 | 242 | 17 | 215 | 1.49e-80 | 241 |
| Msa1144510 | MtrunA17_Chr3g0109801 | 52.586 | 232 | 101 | 5 | 25 | 247 | 53 | 284 | 2.11e-78 | 238 |
| Msa1144510 | MtrunA17_Chr2g0324191 | 48.000 | 125 | 63 | 1 | 25 | 147 | 28 | 152 | 9.77e-40 | 134 |
| Msa1144510 | MtrunA17_Chr4g0022841 | 52.991 | 117 | 55 | 0 | 129 | 245 | 1 | 117 | 5.56e-39 | 131 |
| Msa1144510 | MtrunA17_Chr4g0022851 | 64.948 | 97 | 28 | 2 | 25 | 119 | 32 | 124 | 7.09e-37 | 126 |
| Msa1144510 | MtrunA17_Chr2g0324181 | 57.426 | 101 | 43 | 0 | 147 | 247 | 17 | 117 | 1.17e-35 | 123 |
| Msa1144510 | MtrunA17_Chr2g0324221 | 30.769 | 234 | 132 | 9 | 25 | 243 | 35 | 253 | 9.80e-27 | 104 |
| Msa1144510 | MtrunA17_Chr2g0324201 | 31.197 | 234 | 131 | 10 | 25 | 243 | 33 | 251 | 1.06e-25 | 101 |
| Msa1144510 | MtrunA17_Chr7g0231221 | 32.314 | 229 | 127 | 10 | 30 | 242 | 53 | 269 | 1.66e-24 | 98.6 |
| Msa1144510 | MtrunA17_Chr4g0021641 | 31.602 | 231 | 134 | 9 | 25 | 243 | 41 | 259 | 3.93e-24 | 97.4 |
| Msa1144510 | MtrunA17_Chr4g0055601 | 29.630 | 243 | 157 | 7 | 8 | 243 | 11 | 246 | 7.62e-23 | 93.6 |
| Msa1144510 | MtrunA17_Chr8g0359981 | 54.118 | 85 | 30 | 4 | 67 | 147 | 2 | 81 | 7.82e-23 | 90.1 |
| Msa1144510 | MtrunA17_Chr8g0359971 | 54.545 | 77 | 34 | 1 | 168 | 243 | 1 | 77 | 5.49e-22 | 86.7 |
| Msa1144510 | MtrunA17_Chr4g0012801 | 29.218 | 243 | 139 | 11 | 16 | 242 | 33 | 258 | 1.33e-20 | 87.8 |
| Msa1144510 | MtrunA17_Chr7g0231211 | 29.536 | 237 | 129 | 12 | 25 | 242 | 47 | 264 | 2.91e-20 | 87.0 |
| Msa1144510 | MtrunA17_Chr4g0055561 | 27.347 | 245 | 161 | 9 | 6 | 242 | 9 | 244 | 4.61e-18 | 80.9 |
| Msa1144510 | MtrunA17_Chr5g0399811 | 26.446 | 242 | 163 | 8 | 8 | 242 | 12 | 245 | 1.22e-16 | 77.0 |
| Msa1144510 | MtrunA17_Chr1g0193571 | 60.784 | 51 | 20 | 0 | 192 | 242 | 4 | 54 | 1.28e-15 | 69.3 |
| Msa1144510 | MtrunA17_Chr4g0038741 | 28.700 | 223 | 126 | 8 | 36 | 242 | 32 | 237 | 1.98e-15 | 73.6 |
| Msa1144510 | MtrunA17_Chr4g0055061 | 29.461 | 241 | 135 | 12 | 25 | 247 | 29 | 252 | 2.63e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144510 | AT1G69530.2 | 82.329 | 249 | 42 | 2 | 1 | 247 | 1 | 249 | 6.43e-151 | 421 |
| Msa1144510 | AT1G69530.1 | 82.329 | 249 | 42 | 2 | 1 | 247 | 1 | 249 | 6.43e-151 | 421 |
| Msa1144510 | AT2G03090.1 | 78.947 | 247 | 52 | 0 | 1 | 247 | 6 | 252 | 3.83e-149 | 416 |
| Msa1144510 | AT1G69530.3 | 82.449 | 245 | 41 | 2 | 1 | 243 | 1 | 245 | 8.99e-149 | 416 |
| Msa1144510 | AT1G26770.1 | 81.855 | 248 | 44 | 1 | 1 | 247 | 1 | 248 | 2.40e-141 | 396 |
| Msa1144510 | AT1G26770.2 | 81.855 | 248 | 44 | 1 | 1 | 247 | 11 | 258 | 3.66e-141 | 396 |
| Msa1144510 | AT5G56320.1 | 72.510 | 251 | 65 | 1 | 1 | 247 | 1 | 251 | 9.11e-136 | 382 |
| Msa1144510 | AT5G56320.2 | 72.510 | 251 | 65 | 1 | 1 | 247 | 1 | 251 | 9.11e-136 | 382 |
| Msa1144510 | AT5G56320.3 | 72.510 | 251 | 65 | 1 | 1 | 247 | 1 | 251 | 5.25e-135 | 382 |
| Msa1144510 | AT2G40610.1 | 74.074 | 243 | 62 | 1 | 6 | 247 | 11 | 253 | 5.53e-135 | 380 |
| Msa1144510 | AT2G39700.1 | 69.444 | 252 | 69 | 2 | 1 | 244 | 1 | 252 | 5.24e-127 | 360 |
| Msa1144510 | AT5G05290.1 | 69.076 | 249 | 74 | 2 | 2 | 247 | 7 | 255 | 2.50e-126 | 358 |
| Msa1144510 | AT1G69530.4 | 71.888 | 249 | 38 | 3 | 1 | 247 | 1 | 219 | 3.16e-125 | 354 |
| Msa1144510 | AT1G69530.5 | 73.333 | 240 | 52 | 4 | 1 | 238 | 1 | 230 | 5.02e-125 | 355 |
| Msa1144510 | AT5G02260.1 | 67.742 | 248 | 76 | 2 | 1 | 244 | 6 | 253 | 1.40e-124 | 354 |
| Msa1144510 | AT2G37640.1 | 70.539 | 241 | 68 | 2 | 6 | 244 | 18 | 257 | 1.46e-124 | 354 |
| Msa1144510 | AT3G55500.1 | 73.333 | 225 | 58 | 1 | 22 | 244 | 31 | 255 | 3.19e-124 | 353 |
| Msa1144510 | AT3G29030.1 | 74.107 | 224 | 49 | 2 | 25 | 247 | 38 | 253 | 1.20e-119 | 342 |
| Msa1144510 | AT2G28950.1 | 66.667 | 252 | 76 | 2 | 1 | 244 | 1 | 252 | 4.01e-117 | 335 |
| Msa1144510 | AT1G20190.1 | 71.300 | 223 | 61 | 2 | 24 | 243 | 25 | 247 | 1.99e-114 | 328 |
| Msa1144510 | AT2G37640.2 | 71.707 | 205 | 56 | 1 | 42 | 244 | 28 | 232 | 9.53e-110 | 316 |
| Msa1144510 | AT4G01630.1 | 62.762 | 239 | 85 | 3 | 8 | 242 | 11 | 249 | 9.02e-107 | 309 |
| Msa1144510 | AT5G39280.1 | 56.067 | 239 | 100 | 2 | 9 | 244 | 35 | 271 | 4.27e-98 | 288 |
| Msa1144510 | AT5G39300.1 | 58.636 | 220 | 89 | 1 | 25 | 244 | 55 | 272 | 2.89e-97 | 286 |
| Msa1144510 | AT5G39270.1 | 58.182 | 220 | 90 | 1 | 25 | 244 | 58 | 275 | 1.98e-93 | 276 |
| Msa1144510 | AT5G39290.1 | 57.273 | 220 | 92 | 1 | 25 | 244 | 58 | 275 | 1.21e-92 | 274 |
| Msa1144510 | AT1G20190.2 | 68.449 | 187 | 56 | 2 | 60 | 243 | 2 | 188 | 2.71e-91 | 268 |
| Msa1144510 | AT5G39310.1 | 56.757 | 222 | 93 | 2 | 24 | 244 | 89 | 308 | 3.65e-89 | 266 |
| Msa1144510 | AT1G12560.1 | 55.217 | 230 | 100 | 3 | 15 | 242 | 27 | 255 | 2.04e-86 | 258 |
| Msa1144510 | AT1G62980.1 | 52.479 | 242 | 109 | 5 | 6 | 242 | 10 | 250 | 4.23e-85 | 254 |
| Msa1144510 | AT3G03220.1 | 52.679 | 224 | 105 | 1 | 25 | 247 | 40 | 263 | 3.91e-84 | 252 |
| Msa1144510 | AT3G15370.1 | 52.675 | 243 | 101 | 7 | 6 | 243 | 12 | 245 | 6.24e-82 | 246 |
| Msa1144510 | AT5G39260.1 | 53.846 | 221 | 94 | 2 | 25 | 244 | 45 | 258 | 8.00e-79 | 238 |
| Msa1144510 | AT4G38210.1 | 50.661 | 227 | 108 | 2 | 25 | 247 | 28 | 254 | 2.69e-78 | 237 |
| Msa1144510 | AT3G15370.2 | 47.253 | 273 | 100 | 8 | 6 | 243 | 12 | 275 | 2.39e-75 | 230 |
| Msa1144510 | AT4G28250.1 | 33.190 | 232 | 130 | 9 | 25 | 243 | 36 | 255 | 8.86e-28 | 107 |
| Msa1144510 | AT2G20750.1 | 33.047 | 233 | 132 | 9 | 25 | 243 | 40 | 262 | 4.64e-26 | 103 |
| Msa1144510 | AT4G28250.2 | 32.468 | 231 | 127 | 9 | 25 | 243 | 36 | 249 | 2.01e-24 | 98.2 |
| Msa1144510 | AT1G65680.1 | 30.901 | 233 | 134 | 10 | 25 | 242 | 47 | 267 | 7.84e-23 | 94.4 |
| Msa1144510 | AT1G65681.1 | 29.954 | 217 | 127 | 9 | 39 | 242 | 12 | 216 | 3.55e-19 | 83.6 |
| Msa1144510 | AT2G45110.1 | 28.750 | 240 | 132 | 9 | 24 | 242 | 32 | 253 | 5.79e-19 | 83.6 |
| Msa1144510 | AT4G17030.1 | 27.203 | 261 | 161 | 9 | 2 | 248 | 4 | 249 | 1.20e-18 | 82.8 |
| Msa1144510 | AT4G28250.4 | 33.143 | 175 | 90 | 7 | 25 | 189 | 36 | 193 | 7.72e-17 | 77.0 |
| Msa1144510 | AT2G20750.2 | 31.214 | 173 | 99 | 6 | 25 | 186 | 40 | 203 | 2.15e-16 | 75.9 |
| Msa1144510 | AT3G60570.1 | 25.000 | 232 | 146 | 8 | 25 | 242 | 34 | 251 | 2.27e-16 | 76.6 |
| Msa1144510 | AT4G28250.3 | 33.140 | 172 | 88 | 7 | 25 | 186 | 36 | 190 | 4.03e-16 | 75.1 |
| Msa1144510 | AT3G45970.2 | 26.147 | 218 | 138 | 10 | 43 | 247 | 14 | 221 | 5.75e-14 | 69.7 |
| Msa1144510 | AT3G45960.2 | 29.577 | 213 | 126 | 10 | 48 | 247 | 46 | 247 | 1.62e-13 | 68.6 |
| Msa1144510 | AT4G38400.1 | 27.830 | 212 | 131 | 10 | 48 | 247 | 47 | 248 | 2.06e-12 | 65.5 |
| Msa1144510 | AT3G60570.2 | 23.832 | 214 | 135 | 8 | 43 | 242 | 4 | 203 | 3.04e-12 | 64.3 |
| Msa1144510 | AT3G45970.1 | 25.352 | 213 | 136 | 10 | 48 | 247 | 46 | 248 | 2.41e-11 | 62.8 |
Find 106 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATGGCCCTTCAATTTA+TGG | 0.080320 | 7_4:+20635482 | Msa1144510:three_prime_UTR |
| CACCCGCTATATTTAGTATT+AGG | 0.190674 | 7_4:+20635657 | Msa1144510:three_prime_UTR |
| AATGCACATGCCACCTTCTA+TGG | 0.202737 | 7_4:+20634393 | Msa1144510:CDS |
| CCCTTCAATTTATGGCTCTT+TGG | 0.234819 | 7_4:+20635490 | Msa1144510:three_prime_UTR |
| GCTCCAGCTGGATGGTCTTT+TGG | 0.250334 | 7_4:+20635253 | Msa1144510:CDS |
| TTGTGGTTGAACTACTAAAT+TGG | 0.259563 | 7_4:+20635615 | Msa1144510:three_prime_UTR |
| CACCAACCACCTTGATTGTT+TGG | 0.269349 | 7_4:-20634781 | None:intergenic |
| TCCAGCTGGAGCAACATTAT+TGG | 0.273928 | 7_4:-20635242 | None:intergenic |
| GACCATAGATGGTGCCTTCC+TGG | 0.298042 | 7_4:+20634709 | Msa1144510:CDS |
| GTAGGTGGGGCTTGTGGATA+TGG | 0.300951 | 7_4:+20634580 | Msa1144510:intron |
| GGATATCTATGTCAAGAAAC+TGG | 0.302501 | 7_4:+20635134 | Msa1144510:CDS |
| AGTATTTCTAAACTTGAAAC+TGG | 0.309026 | 7_4:-20635323 | None:intergenic |
| TTCCATACCCTTGACTATAA+AGG | 0.310459 | 7_4:-20634606 | None:intergenic |
| GGCTTACATTGGCTTGCTTT+TGG | 0.310735 | 7_4:+20634317 | Msa1144510:CDS |
| ACCCGCTATATTTAGTATTA+GGG | 0.318190 | 7_4:+20635658 | Msa1144510:three_prime_UTR |
| GGTATAAGGTTCACTATTAA+TGG | 0.324866 | 7_4:+20635022 | Msa1144510:CDS |
| GTGGCTCTTGCTATGAAATT+AGG | 0.339101 | 7_4:+20634677 | Msa1144510:CDS |
| CAAGAAACTGGGGACAAAAT+TGG | 0.340071 | 7_4:+20635146 | Msa1144510:CDS |
| TTCTCCTCTGTTTATGCCTA+TGG | 0.366961 | 7_4:+20634357 | Msa1144510:CDS |
| CCCCAAACCACTCTTCTTCA+AGG | 0.370993 | 7_4:+20634056 | None:intergenic |
| CTTTGGTTATTGTGGTGTTT+CGG | 0.371280 | 7_4:+20635507 | Msa1144510:three_prime_UTR |
| TAAATTGGAGGAGGTGGAAA+TGG | 0.377719 | 7_4:+20635630 | Msa1144510:three_prime_UTR |
| TGGCTGGGTAAGGTATGTTT+TGG | 0.381554 | 7_4:+20635753 | Msa1144510:three_prime_UTR |
| TCCAATAATGTTGCTCCAGC+TGG | 0.392823 | 7_4:+20635241 | Msa1144510:CDS |
| CCCAGCCAAGGCTGATTACA+AGG | 0.393740 | 7_4:-20635738 | None:intergenic |
| AACCAGGAAGGCACCATCTA+TGG | 0.400538 | 7_4:-20634711 | None:intergenic |
| TTGTTTGGTAAGGCATTGTT+TGG | 0.404496 | 7_4:-20634766 | None:intergenic |
| ATCACAAACGTTGGTGGTGC+TGG | 0.417253 | 7_4:+20635070 | Msa1144510:CDS |
| TCCTTGTAATCAGCCTTGGC+TGG | 0.421343 | 7_4:+20635737 | Msa1144510:three_prime_UTR |
| CTCAAATCCTCTAGAGCATA+TGG | 0.422412 | 7_4:+20635293 | Msa1144510:exon |
| AACTACTAAATTGGAGGAGG+TGG | 0.430327 | 7_4:+20635624 | Msa1144510:three_prime_UTR |
| TATGGAGGAAGTGATGCTTC+AGG | 0.438776 | 7_4:+20634411 | Msa1144510:CDS |
| TTCAAGGTCTATAAATTAAG+TGG | 0.448653 | 7_4:+20634072 | Msa1144510:five_prime_UTR |
| AGCATCACTTCCTCCATAGA+AGG | 0.449496 | 7_4:-20634406 | None:intergenic |
| CTAATCCTTGTAATCAGCCT+TGG | 0.470855 | 7_4:+20635733 | Msa1144510:three_prime_UTR |
| TTATGGCTCTTTGGTTATTG+TGG | 0.473038 | 7_4:+20635499 | Msa1144510:three_prime_UTR |
| AGGGTGTCATGCAGAAGAAA+GGG | 0.474428 | 7_4:+20634998 | Msa1144510:intron |
| TAATCAGCCTTGGCTGGGTA+AGG | 0.486468 | 7_4:+20635743 | Msa1144510:three_prime_UTR |
| TAGTACCTCAATAGTATACT+AGG | 0.491481 | 7_4:+20635384 | Msa1144510:three_prime_UTR |
| ACCAAAGAGCCATAAATTGA+AGG | 0.498650 | 7_4:-20635491 | None:intergenic |
| TAGGGTGTCATGCAGAAGAA+AGG | 0.498929 | 7_4:+20634997 | Msa1144510:intron |
| GAAATTACTTTGATAGTCAA+AGG | 0.505026 | 7_4:-20634166 | None:intergenic |
| TGGTTGAACTACTAAATTGG+AGG | 0.505389 | 7_4:+20635618 | Msa1144510:three_prime_UTR |
| CAGAGCAACAATTATCTCAA+TGG | 0.508519 | 7_4:+20635169 | Msa1144510:CDS |
| AACCTTTATAGTCAAGGGTA+TGG | 0.513145 | 7_4:+20634604 | Msa1144510:CDS |
| TCTGTTTATGCCTATGGTGG+AGG | 0.513461 | 7_4:+20634363 | Msa1144510:CDS |
| CGTATTGCTCAATACAAAGC+TGG | 0.513556 | 7_4:+20634850 | Msa1144510:CDS |
| AGTGATGCTTCAGGAACAAT+GGG | 0.514794 | 7_4:+20634420 | Msa1144510:CDS |
| TCCTCTGTTTATGCCTATGG+TGG | 0.517540 | 7_4:+20634360 | Msa1144510:CDS |
| AATATCCTAGTATACTATTG+AGG | 0.517752 | 7_4:-20635389 | None:intergenic |
| ACCACCTTGATTGTTTGGTA+AGG | 0.522218 | 7_4:-20634776 | None:intergenic |
| TTTGGTAAGGCATTGTTTGG+AGG | 0.522270 | 7_4:-20634763 | None:intergenic |
| GTTGAGCAAGATCAAAATGT+TGG | 0.527634 | 7_4:-20634816 | None:intergenic |
| TTTAAGGTTACAACTAGTGA+TGG | 0.529102 | 7_4:+20635205 | Msa1144510:CDS |
| ACCTACCTTCTAAAATCTAC+AGG | 0.533353 | 7_4:-20634880 | None:intergenic |
| AAACAGGAAATGGCTTACAT+TGG | 0.533906 | 7_4:+20634306 | Msa1144510:intron |
| GTTCTTATCACAAACGTTGG+TGG | 0.543313 | 7_4:+20635064 | Msa1144510:CDS |
| TACATGCTGCATCCATCAAA+GGG | 0.543754 | 7_4:+20635098 | Msa1144510:CDS |
| TATGGTAACCTTTATAGTCA+AGG | 0.546440 | 7_4:+20634598 | Msa1144510:CDS |
| TTCAACAATGGCTTAAGCTG+TGG | 0.546607 | 7_4:+20634658 | Msa1144510:CDS |
| GATCAAAATGTTGGAGAGGA+GGG | 0.550651 | 7_4:-20634807 | None:intergenic |
| GTTTGGAGGACAGAAATTTG+TGG | 0.554497 | 7_4:-20634749 | None:intergenic |
| CCAAAGAGCCATAAATTGAA+GGG | 0.556186 | 7_4:-20635490 | None:intergenic |
| AAGTGATGCTTCAGGAACAA+TGG | 0.556486 | 7_4:+20634419 | Msa1144510:CDS |
| ATATTAAATAGTATGCTGCT+AGG | 0.557428 | 7_4:+20635407 | Msa1144510:three_prime_UTR |
| TATTAAATAGTATGCTGCTA+GGG | 0.560427 | 7_4:+20635408 | Msa1144510:three_prime_UTR |
| CTAATATAGATGTTAGCAGA+AGG | 0.562363 | 7_4:+20635573 | Msa1144510:three_prime_UTR |
| TGTGAAGTGAAGAGTGTTGG+TGG | 0.564670 | 7_4:-20634100 | None:intergenic |
| CCTTGTAATCAGCCTTGGCT+GGG | 0.566017 | 7_4:+20635738 | Msa1144510:three_prime_UTR |
| GTACATGCTGCATCCATCAA+AGG | 0.567778 | 7_4:+20635097 | Msa1144510:CDS |
| TGACCAAAAGACCATCCAGC+TGG | 0.568697 | 7_4:-20635256 | None:intergenic |
| GATATCTATGTCAAGAAACT+GGG | 0.570919 | 7_4:+20635135 | Msa1144510:CDS |
| TTTATGCCTATGGTGGAGGA+TGG | 0.581237 | 7_4:+20634367 | Msa1144510:CDS |
| AGATCAAAATGTTGGAGAGG+AGG | 0.586254 | 7_4:-20634808 | None:intergenic |
| AATTTGACCATATGCTCTAG+AGG | 0.586262 | 7_4:-20635300 | None:intergenic |
| ACCCTAATACTAAATATAGC+GGG | 0.586746 | 7_4:-20635659 | None:intergenic |
| ATGGTAACCTTTATAGTCAA+GGG | 0.589746 | 7_4:+20634599 | Msa1144510:CDS |
| ATAATGTTGCTCCAGCTGGA+TGG | 0.590574 | 7_4:+20635245 | Msa1144510:CDS |
| GTGCCTTCCTGGTTCCATTG+TGG | 0.591922 | 7_4:+20634720 | Msa1144510:CDS |
| TACCAAACAATCAAGGTGGT+TGG | 0.598522 | 7_4:+20634779 | Msa1144510:CDS |
| ATTAGTCCATCCTCCACCAT+AGG | 0.598598 | 7_4:-20634373 | None:intergenic |
| GCAGTGACCACAATGGAACC+AGG | 0.602351 | 7_4:-20634727 | None:intergenic |
| TTAGTTCTTATCACAAACGT+TGG | 0.605020 | 7_4:+20635061 | Msa1144510:CDS |
| GGGTGTCATGCAGAAGAAAG+GGG | 0.608021 | 7_4:+20634999 | Msa1144510:intron |
| AATGCCTTACCAAACAATCA+AGG | 0.612141 | 7_4:+20634772 | Msa1144510:CDS |
| ATATTAGCAGAGCAGCAGAA+TGG | 0.618183 | 7_4:-20635557 | None:intergenic |
| GAGGATTTGAGCACCAGTGT+AGG | 0.625146 | 7_4:-20635281 | None:intergenic |
| GGTGTGCTAATGACCATAGA+TGG | 0.625411 | 7_4:+20634698 | Msa1144510:CDS |
| ATGTGTGAAGTGAAGAGTGT+TGG | 0.627130 | 7_4:-20634103 | None:intergenic |
| GGTGTCATGCAGAAGAAAGG+GGG | 0.628611 | 7_4:+20635000 | Msa1144510:CDS |
| AAACATACCTTACCCAGCCA+AGG | 0.637920 | 7_4:-20635750 | None:intergenic |
| TTGAACTACTAAATTGGAGG+AGG | 0.638601 | 7_4:+20635621 | Msa1144510:three_prime_UTR |
| TAATATAGATGTTAGCAGAA+GGG | 0.640329 | 7_4:+20635574 | Msa1144510:three_prime_UTR |
| GCAAGATCAAAATGTTGGAG+AGG | 0.641783 | 7_4:-20634811 | None:intergenic |
| ATCACTTCCTCCATAGAAGG+TGG | 0.643748 | 7_4:-20634403 | None:intergenic |
| GCACATGCCACCTTCTATGG+AGG | 0.644186 | 7_4:+20634396 | Msa1144510:CDS |
| TACCCTAATACTAAATATAG+CGG | 0.647079 | 7_4:-20635660 | None:intergenic |
| GAAAAGTGCTGTACTCAAAG+CGG | 0.652141 | 7_4:-20634638 | None:intergenic |
| GTGAAGTGAAGAGTGTTGGT+GGG | 0.657415 | 7_4:-20634099 | None:intergenic |
| CTAATACTAAATATAGCGGG+TGG | 0.673805 | 7_4:-20635656 | None:intergenic |
| TGACCACAATGGAACCAGGA+AGG | 0.676921 | 7_4:-20634723 | None:intergenic |
| ATTTGTGGCAGTGACCACAA+TGG | 0.706109 | 7_4:-20634734 | None:intergenic |
| ATATCTATGTCAAGAAACTG+GGG | 0.706710 | 7_4:+20635136 | Msa1144510:CDS |
| GTGTCATGCAGAAGAAAGGG+GGG | 0.710137 | 7_4:+20635001 | Msa1144510:CDS |
| GCCTTACCAAACAATCAAGG+TGG | 0.713350 | 7_4:+20634775 | Msa1144510:CDS |
| TCCACCATAGGCATAAACAG+AGG | 0.739179 | 7_4:-20634361 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCAATTTTTTTGTATT+TGG | + | chr7_4:20634936-20634955 | Msa1144510:intron | 10.0% |
| !!! | CACATTTTAGTACATAAATT+TGG | - | chr7_4:20634246-20634265 | None:intergenic | 20.0% |
| !!! | TAGTGGTTTTTATTGAAAAA+TGG | - | chr7_4:20634452-20634471 | None:intergenic | 20.0% |
| !! | ATATAAAAAATGTAGATGCT+TGG | - | chr7_4:20634914-20634933 | None:intergenic | 20.0% |
| !!! | ACTAATTTGTGTTTTTATTG+CGG | + | chr7_4:20634964-20634983 | Msa1144510:intron | 20.0% |
| !!! | ACTTTTTCTTTATATCTTTG+TGG | + | chr7_4:20635598-20635617 | Msa1144510:three_prime_UTR | 20.0% |
| !!! | ATCCTTTTAGTTTTTCATTT+TGG | + | chr7_4:20635685-20635704 | Msa1144510:three_prime_UTR | 20.0% |
| !!! | TCCTTTTAGTTTTTCATTTT+GGG | + | chr7_4:20635686-20635705 | Msa1144510:three_prime_UTR | 20.0% |
| ! | TTCAAGGTCTATAAATTAAG+TGG | + | chr7_4:20634072-20634091 | Msa1144510:five_prime_UTR | 25.0% |
| !! | GAAATTACTTTGATAGTCAA+AGG | - | chr7_4:20634169-20634188 | None:intergenic | 25.0% |
| ! | ATGTACTAAAATGTGTTACA+AGG | + | chr7_4:20634251-20634270 | Msa1144510:intron | 25.0% |
| !!! | TTTGTTTTGTACATTGAAAC+AGG | + | chr7_4:20634290-20634309 | Msa1144510:intron | 25.0% |
| !! | CAAAACTTTATTTCAAGTAG+TGG | - | chr7_4:20634469-20634488 | None:intergenic | 25.0% |
| !! | AGTATTTCTAAACTTGAAAC+TGG | - | chr7_4:20635326-20635345 | None:intergenic | 25.0% |
| ! | AATATCCTAGTATACTATTG+AGG | - | chr7_4:20635392-20635411 | None:intergenic | 25.0% |
| ! | ATATTAAATAGTATGCTGCT+AGG | + | chr7_4:20635407-20635426 | Msa1144510:three_prime_UTR | 25.0% |
| ! | TATTAAATAGTATGCTGCTA+GGG | + | chr7_4:20635408-20635427 | Msa1144510:three_prime_UTR | 25.0% |
| !!! | TTTGTTTTTGGTTGTTTTAG+AGG | + | chr7_4:20635441-20635460 | Msa1144510:three_prime_UTR | 25.0% |
| !!! | TTTTAAAATATGCCCTTCAT+TGG | - | chr7_4:20635467-20635486 | None:intergenic | 25.0% |
| !!! | ATGAAGGGCATATTTTAAAA+TGG | + | chr7_4:20635467-20635486 | Msa1144510:three_prime_UTR | 25.0% |
| ! | TAATATAGATGTTAGCAGAA+GGG | + | chr7_4:20635574-20635593 | Msa1144510:three_prime_UTR | 25.0% |
| ! | TACCCTAATACTAAATATAG+CGG | - | chr7_4:20635663-20635682 | None:intergenic | 25.0% |
| ! | TCCCAAAATGAAAAACTAAA+AGG | - | chr7_4:20635690-20635709 | None:intergenic | 25.0% |
| TTGTACATTGAAACAGGAAA+TGG | + | chr7_4:20634296-20634315 | Msa1144510:intron | 30.0% | |
| AACAACAAAGTCAGTGAAAT+GGG | - | chr7_4:20634554-20634573 | None:intergenic | 30.0% | |
| AAACAACAAAGTCAGTGAAA+TGG | - | chr7_4:20634555-20634574 | None:intergenic | 30.0% | |
| !!! | GACTTTGTTGTTTTTTGTGT+AGG | + | chr7_4:20634562-20634581 | Msa1144510:intron | 30.0% |
| !!! | TTTGTTGTTTTTTGTGTAGG+TGG | + | chr7_4:20634565-20634584 | Msa1144510:intron | 30.0% |
| !!! | TTGTTGTTTTTTGTGTAGGT+GGG | + | chr7_4:20634566-20634585 | Msa1144510:intron | 30.0% |
| TATGGTAACCTTTATAGTCA+AGG | + | chr7_4:20634598-20634617 | Msa1144510:CDS | 30.0% | |
| ATGGTAACCTTTATAGTCAA+GGG | + | chr7_4:20634599-20634618 | Msa1144510:CDS | 30.0% | |
| ! | TTGTTCCTGTAGATTTTAGA+AGG | + | chr7_4:20634875-20634894 | Msa1144510:CDS | 30.0% |
| GGTATAAGGTTCACTATTAA+TGG | + | chr7_4:20635022-20635041 | Msa1144510:CDS | 30.0% | |
| ! | TTAGTTCTTATCACAAACGT+TGG | + | chr7_4:20635061-20635080 | Msa1144510:CDS | 30.0% |
| GATATCTATGTCAAGAAACT+GGG | + | chr7_4:20635135-20635154 | Msa1144510:CDS | 30.0% | |
| ATATCTATGTCAAGAAACTG+GGG | + | chr7_4:20635136-20635155 | Msa1144510:CDS | 30.0% | |
| ! | TGGTCAAAGTTTGTCTTTTA+AGG | + | chr7_4:20635189-20635208 | Msa1144510:CDS | 30.0% |
| ! | TTTAAGGTTACAACTAGTGA+TGG | + | chr7_4:20635205-20635224 | Msa1144510:CDS | 30.0% |
| TAGTACCTCAATAGTATACT+AGG | + | chr7_4:20635384-20635403 | Msa1144510:three_prime_UTR | 30.0% | |
| !! | GGAAAAAATGGGTTTGTTTT+TGG | + | chr7_4:20635429-20635448 | Msa1144510:three_prime_UTR | 30.0% |
| TAAAATGGCCCTTCAATTTA+TGG | + | chr7_4:20635482-20635501 | Msa1144510:three_prime_UTR | 30.0% | |
| CTAATATAGATGTTAGCAGA+AGG | + | chr7_4:20635573-20635592 | Msa1144510:three_prime_UTR | 30.0% | |
| TTGTGGTTGAACTACTAAAT+TGG | + | chr7_4:20635615-20635634 | Msa1144510:three_prime_UTR | 30.0% | |
| ACCCGCTATATTTAGTATTA+GGG | + | chr7_4:20635658-20635677 | Msa1144510:three_prime_UTR | 30.0% | |
| ACCCTAATACTAAATATAGC+GGG | - | chr7_4:20635662-20635681 | None:intergenic | 30.0% | |
| !!! | AAGGTATGTTTTGGTTGTAT+TGG | + | chr7_4:20635762-20635781 | Msa1144510:three_prime_UTR | 30.0% |
| !!! | AGGTATGTTTTGGTTGTATT+GGG | + | chr7_4:20635763-20635782 | Msa1144510:three_prime_UTR | 30.0% |
| ATGAAGGAGCAATGTGAAAA+AGG | - | chr7_4:20634191-20634210 | None:intergenic | 35.0% | |
| GAACTTTAGCATTCAGATGA+AGG | - | chr7_4:20634207-20634226 | None:intergenic | 35.0% | |
| AAACAGGAAATGGCTTACAT+TGG | + | chr7_4:20634306-20634325 | Msa1144510:intron | 35.0% | |
| !!! | TGTTGTTTTTTGTGTAGGTG+GGG | + | chr7_4:20634567-20634586 | Msa1144510:intron | 35.0% |
| AACCTTTATAGTCAAGGGTA+TGG | + | chr7_4:20634604-20634623 | Msa1144510:CDS | 35.0% | |
| TTCCATACCCTTGACTATAA+AGG | - | chr7_4:20634609-20634628 | None:intergenic | 35.0% | |
| ! | AGTACAGCACTTTTCAACAA+TGG | + | chr7_4:20634646-20634665 | Msa1144510:CDS | 35.0% |
| !! | TTGTTTGGTAAGGCATTGTT+TGG | - | chr7_4:20634769-20634788 | None:intergenic | 35.0% |
| AATGCCTTACCAAACAATCA+AGG | + | chr7_4:20634772-20634791 | Msa1144510:CDS | 35.0% | |
| GTTGAGCAAGATCAAAATGT+TGG | - | chr7_4:20634819-20634838 | None:intergenic | 35.0% | |
| TGAGCAATACGAAGAAAAAC+AGG | - | chr7_4:20634841-20634860 | None:intergenic | 35.0% | |
| !! | TCCTGTAGATTTTAGAAGGT+AGG | + | chr7_4:20634879-20634898 | Msa1144510:intron | 35.0% |
| !! | ACCTACCTTCTAAAATCTAC+AGG | - | chr7_4:20634883-20634902 | None:intergenic | 35.0% |
| TTATTGCGGTGAATTTGTGT+AGG | + | chr7_4:20634978-20634997 | Msa1144510:intron | 35.0% | |
| TATTGCGGTGAATTTGTGTA+GGG | + | chr7_4:20634979-20634998 | Msa1144510:intron | 35.0% | |
| GGATATCTATGTCAAGAAAC+TGG | + | chr7_4:20635134-20635153 | Msa1144510:CDS | 35.0% | |
| CAGAGCAACAATTATCTCAA+TGG | + | chr7_4:20635169-20635188 | Msa1144510:CDS | 35.0% | |
| AATTTGACCATATGCTCTAG+AGG | - | chr7_4:20635303-20635322 | None:intergenic | 35.0% | |
| TATGCTGCTAGGGAAAAAAT+GGG | + | chr7_4:20635418-20635437 | Msa1144510:three_prime_UTR | 35.0% | |
| !!! | TTGTTTTAGAGGCCAATGAA+GGG | + | chr7_4:20635452-20635471 | Msa1144510:three_prime_UTR | 35.0% |
| CCAAAGAGCCATAAATTGAA+GGG | - | chr7_4:20635493-20635512 | None:intergenic | 35.0% | |
| ACCAAAGAGCCATAAATTGA+AGG | - | chr7_4:20635494-20635513 | None:intergenic | 35.0% | |
| TTATGGCTCTTTGGTTATTG+TGG | + | chr7_4:20635499-20635518 | Msa1144510:three_prime_UTR | 35.0% | |
| CTTTGGTTATTGTGGTGTTT+CGG | + | chr7_4:20635507-20635526 | Msa1144510:three_prime_UTR | 35.0% | |
| TGGTTGAACTACTAAATTGG+AGG | + | chr7_4:20635618-20635637 | Msa1144510:three_prime_UTR | 35.0% | |
| TTGAACTACTAAATTGGAGG+AGG | + | chr7_4:20635621-20635640 | Msa1144510:three_prime_UTR | 35.0% | |
| ! | CTAATACTAAATATAGCGGG+TGG | - | chr7_4:20635659-20635678 | None:intergenic | 35.0% |
| CACCCGCTATATTTAGTATT+AGG | + | chr7_4:20635657-20635676 | Msa1144510:three_prime_UTR | 35.0% | |
| !!! | GGTATGTTTTGGTTGTATTG+GGG | + | chr7_4:20635764-20635783 | Msa1144510:three_prime_UTR | 35.0% |
| ! | ATGTGTGAAGTGAAGAGTGT+TGG | - | chr7_4:20634106-20634125 | None:intergenic | 40.0% |
| TTCTCCTCTGTTTATGCCTA+TGG | + | chr7_4:20634357-20634376 | Msa1144510:CDS | 40.0% | |
| AAGTGATGCTTCAGGAACAA+TGG | + | chr7_4:20634419-20634438 | Msa1144510:CDS | 40.0% | |
| AGTGATGCTTCAGGAACAAT+GGG | + | chr7_4:20634420-20634439 | Msa1144510:CDS | 40.0% | |
| !! | GAAAAGTGCTGTACTCAAAG+CGG | - | chr7_4:20634641-20634660 | None:intergenic | 40.0% |
| TTCAACAATGGCTTAAGCTG+TGG | + | chr7_4:20634658-20634677 | Msa1144510:CDS | 40.0% | |
| ! | GTGGCTCTTGCTATGAAATT+AGG | + | chr7_4:20634677-20634696 | Msa1144510:CDS | 40.0% |
| GTTTGGAGGACAGAAATTTG+TGG | - | chr7_4:20634752-20634771 | None:intergenic | 40.0% | |
| !! | TTTGGTAAGGCATTGTTTGG+AGG | - | chr7_4:20634766-20634785 | None:intergenic | 40.0% |
| ACCACCTTGATTGTTTGGTA+AGG | - | chr7_4:20634779-20634798 | None:intergenic | 40.0% | |
| TACCAAACAATCAAGGTGGT+TGG | + | chr7_4:20634779-20634798 | Msa1144510:CDS | 40.0% | |
| GATCAAAATGTTGGAGAGGA+GGG | - | chr7_4:20634810-20634829 | None:intergenic | 40.0% | |
| AGATCAAAATGTTGGAGAGG+AGG | - | chr7_4:20634811-20634830 | None:intergenic | 40.0% | |
| GCAAGATCAAAATGTTGGAG+AGG | - | chr7_4:20634814-20634833 | None:intergenic | 40.0% | |
| CGTATTGCTCAATACAAAGC+TGG | + | chr7_4:20634850-20634869 | Msa1144510:CDS | 40.0% | |
| GTTCTTATCACAAACGTTGG+TGG | + | chr7_4:20635064-20635083 | Msa1144510:CDS | 40.0% | |
| TACATGCTGCATCCATCAAA+GGG | + | chr7_4:20635098-20635117 | Msa1144510:CDS | 40.0% | |
| TCCATCAAAGGGTCAAAAAC+TGG | + | chr7_4:20635109-20635128 | Msa1144510:CDS | 40.0% | |
| ! | ACCAGTTTTTGACCCTTTGA+TGG | - | chr7_4:20635113-20635132 | None:intergenic | 40.0% |
| TCAAAGGGTCAAAAACTGGT+TGG | + | chr7_4:20635113-20635132 | Msa1144510:CDS | 40.0% | |
| CAAGAAACTGGGGACAAAAT+TGG | + | chr7_4:20635146-20635165 | Msa1144510:CDS | 40.0% | |
| ! | TCTTTTGGTCAAACCTACAC+TGG | + | chr7_4:20635268-20635287 | Msa1144510:CDS | 40.0% |
| !! | CTCAAATCCTCTAGAGCATA+TGG | + | chr7_4:20635293-20635312 | Msa1144510:exon | 40.0% |
| GTATGCTGCTAGGGAAAAAA+TGG | + | chr7_4:20635417-20635436 | Msa1144510:three_prime_UTR | 40.0% | |
| !!! | GTTGTTTTAGAGGCCAATGA+AGG | + | chr7_4:20635451-20635470 | Msa1144510:three_prime_UTR | 40.0% |
| CCCTTCAATTTATGGCTCTT+TGG | + | chr7_4:20635490-20635509 | Msa1144510:three_prime_UTR | 40.0% | |
| ATATTAGCAGAGCAGCAGAA+TGG | - | chr7_4:20635560-20635579 | None:intergenic | 40.0% | |
| AACTACTAAATTGGAGGAGG+TGG | + | chr7_4:20635624-20635643 | Msa1144510:three_prime_UTR | 40.0% | |
| TAAATTGGAGGAGGTGGAAA+TGG | + | chr7_4:20635630-20635649 | Msa1144510:three_prime_UTR | 40.0% | |
| CTAATCCTTGTAATCAGCCT+TGG | + | chr7_4:20635733-20635752 | Msa1144510:three_prime_UTR | 40.0% | |
| !! | GTGAAGTGAAGAGTGTTGGT+GGG | - | chr7_4:20634102-20634121 | None:intergenic | 45.0% |
| !! | TGTGAAGTGAAGAGTGTTGG+TGG | - | chr7_4:20634103-20634122 | None:intergenic | 45.0% |
| !!! | GGCTTACATTGGCTTGCTTT+TGG | + | chr7_4:20634317-20634336 | Msa1144510:CDS | 45.0% |
| TCCTCTGTTTATGCCTATGG+TGG | + | chr7_4:20634360-20634379 | Msa1144510:CDS | 45.0% | |
| TCCACCATAGGCATAAACAG+AGG | - | chr7_4:20634364-20634383 | None:intergenic | 45.0% | |
| TCTGTTTATGCCTATGGTGG+AGG | + | chr7_4:20634363-20634382 | Msa1144510:CDS | 45.0% | |
| ! | TTTATGCCTATGGTGGAGGA+TGG | + | chr7_4:20634367-20634386 | Msa1144510:CDS | 45.0% |
| ATTAGTCCATCCTCCACCAT+AGG | - | chr7_4:20634376-20634395 | None:intergenic | 45.0% | |
| AATGCACATGCCACCTTCTA+TGG | + | chr7_4:20634393-20634412 | Msa1144510:CDS | 45.0% | |
| ATCACTTCCTCCATAGAAGG+TGG | - | chr7_4:20634406-20634425 | None:intergenic | 45.0% | |
| AGCATCACTTCCTCCATAGA+AGG | - | chr7_4:20634409-20634428 | None:intergenic | 45.0% | |
| TATGGAGGAAGTGATGCTTC+AGG | + | chr7_4:20634411-20634430 | Msa1144510:CDS | 45.0% | |
| GGTGTGCTAATGACCATAGA+TGG | + | chr7_4:20634698-20634717 | Msa1144510:CDS | 45.0% | |
| ATTTGTGGCAGTGACCACAA+TGG | - | chr7_4:20634737-20634756 | None:intergenic | 45.0% | |
| GCCTTACCAAACAATCAAGG+TGG | + | chr7_4:20634775-20634794 | Msa1144510:CDS | 45.0% | |
| CACCAACCACCTTGATTGTT+TGG | - | chr7_4:20634784-20634803 | None:intergenic | 45.0% | |
| ! | TAGGGTGTCATGCAGAAGAA+AGG | + | chr7_4:20634997-20635016 | Msa1144510:intron | 45.0% |
| ! | AGGGTGTCATGCAGAAGAAA+GGG | + | chr7_4:20634998-20635017 | Msa1144510:intron | 45.0% |
| GTACATGCTGCATCCATCAA+AGG | + | chr7_4:20635097-20635116 | Msa1144510:CDS | 45.0% | |
| TCCAATAATGTTGCTCCAGC+TGG | + | chr7_4:20635241-20635260 | Msa1144510:CDS | 45.0% | |
| TCCAGCTGGAGCAACATTAT+TGG | - | chr7_4:20635245-20635264 | None:intergenic | 45.0% | |
| ATAATGTTGCTCCAGCTGGA+TGG | + | chr7_4:20635245-20635264 | Msa1144510:CDS | 45.0% | |
| AAACATACCTTACCCAGCCA+AGG | - | chr7_4:20635753-20635772 | None:intergenic | 45.0% | |
| ! | TGGCTGGGTAAGGTATGTTT+TGG | + | chr7_4:20635753-20635772 | Msa1144510:three_prime_UTR | 45.0% |
| ! | TTTTGTGTAGGTGGGGCTTG+TGG | + | chr7_4:20634574-20634593 | Msa1144510:intron | 50.0% |
| !! | AACCAGGAAGGCACCATCTA+TGG | - | chr7_4:20634714-20634733 | None:intergenic | 50.0% |
| TGACCACAATGGAACCAGGA+AGG | - | chr7_4:20634726-20634745 | None:intergenic | 50.0% | |
| ! | GGGTGTCATGCAGAAGAAAG+GGG | + | chr7_4:20634999-20635018 | Msa1144510:intron | 50.0% |
| ! | GGTGTCATGCAGAAGAAAGG+GGG | + | chr7_4:20635000-20635019 | Msa1144510:CDS | 50.0% |
| GTGTCATGCAGAAGAAAGGG+GGG | + | chr7_4:20635001-20635020 | Msa1144510:CDS | 50.0% | |
| ! | GCAGAAGAAAGGGGGGTATA+AGG | + | chr7_4:20635008-20635027 | Msa1144510:CDS | 50.0% |
| !! | ATCACAAACGTTGGTGGTGC+TGG | + | chr7_4:20635070-20635089 | Msa1144510:CDS | 50.0% |
| TGACCAAAAGACCATCCAGC+TGG | - | chr7_4:20635259-20635278 | None:intergenic | 50.0% | |
| GAGGATTTGAGCACCAGTGT+AGG | - | chr7_4:20635284-20635303 | None:intergenic | 50.0% | |
| TCCTTGTAATCAGCCTTGGC+TGG | + | chr7_4:20635737-20635756 | Msa1144510:three_prime_UTR | 50.0% | |
| CCTTGTAATCAGCCTTGGCT+GGG | + | chr7_4:20635738-20635757 | Msa1144510:three_prime_UTR | 50.0% | |
| TAATCAGCCTTGGCTGGGTA+AGG | + | chr7_4:20635743-20635762 | Msa1144510:three_prime_UTR | 50.0% | |
| GCACATGCCACCTTCTATGG+AGG | + | chr7_4:20634396-20634415 | Msa1144510:CDS | 55.0% | |
| GTAGGTGGGGCTTGTGGATA+TGG | + | chr7_4:20634580-20634599 | Msa1144510:intron | 55.0% | |
| GACCATAGATGGTGCCTTCC+TGG | + | chr7_4:20634709-20634728 | Msa1144510:CDS | 55.0% | |
| GTGCCTTCCTGGTTCCATTG+TGG | + | chr7_4:20634720-20634739 | Msa1144510:CDS | 55.0% | |
| GCAGTGACCACAATGGAACC+AGG | - | chr7_4:20634730-20634749 | None:intergenic | 55.0% | |
| ! | GCTCCAGCTGGATGGTCTTT+TGG | + | chr7_4:20635253-20635272 | Msa1144510:CDS | 55.0% |
| CCCAGCCAAGGCTGATTACA+AGG | - | chr7_4:20635741-20635760 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 20634071 | 20635849 | 20634071 | ID=Msa1144510;Name=Msa1144510 |
| chr7_4 | mRNA | 20634071 | 20635849 | 20634071 | ID=Msa1144510-mRNA-1;Parent=Msa1144510;Name=Msa1144510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=113|1|1|1|0.66|0.5|4|543|248 |
| chr7_4 | exon | 20634071 | 20634180 | 20634071 | ID=Msa1144510-mRNA-1:exon:4934;Parent=Msa1144510-mRNA-1 |
| chr7_4 | exon | 20634312 | 20634441 | 20634312 | ID=Msa1144510-mRNA-1:exon:4935;Parent=Msa1144510-mRNA-1 |
| chr7_4 | exon | 20634584 | 20634896 | 20634584 | ID=Msa1144510-mRNA-1:exon:4936;Parent=Msa1144510-mRNA-1 |
| chr7_4 | exon | 20635000 | 20635849 | 20635000 | ID=Msa1144510-mRNA-1:exon:4937;Parent=Msa1144510-mRNA-1 |
| chr7_4 | five_prime_UTR | 20634071 | 20634180 | 20634071 | ID=Msa1144510-mRNA-1:five_prime_utr;Parent=Msa1144510-mRNA-1 |
| chr7_4 | five_prime_UTR | 20634312 | 20634314 | 20634312 | ID=Msa1144510-mRNA-1:five_prime_utr;Parent=Msa1144510-mRNA-1 |
| chr7_4 | CDS | 20634315 | 20634441 | 20634315 | ID=Msa1144510-mRNA-1:cds;Parent=Msa1144510-mRNA-1 |
| chr7_4 | CDS | 20634584 | 20634896 | 20634584 | ID=Msa1144510-mRNA-1:cds;Parent=Msa1144510-mRNA-1 |
| chr7_4 | CDS | 20635000 | 20635306 | 20635000 | ID=Msa1144510-mRNA-1:cds;Parent=Msa1144510-mRNA-1 |
| chr7_4 | three_prime_UTR | 20635307 | 20635849 | 20635307 | ID=Msa1144510-mRNA-1:three_prime_utr;Parent=Msa1144510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
