Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316390 | XP_013462834.1 | 82.394 | 142 | 1 | 1 | 1 | 142 | 1 | 118 | 2.12e-74 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316390 | sp|M1C146|ATG8C_SOLTU | 71.127 | 142 | 17 | 1 | 1 | 142 | 1 | 118 | 8.34e-68 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0316390 | 0.811935 | 5.457217e-51 | -8.615850e-47 |
| Msa0020410 | Msa0316390 | 0.820202 | 7.767231e-53 | -8.615850e-47 |
| Msa0023330 | Msa0316390 | 0.800006 | 1.764671e-48 | -8.615850e-47 |
| Msa0026910 | Msa0316390 | 0.827733 | 1.329255e-54 | -8.615850e-47 |
| Msa0032080 | Msa0316390 | 0.813166 | 2.937224e-51 | -8.615850e-47 |
| Msa0032470 | Msa0316390 | 0.831026 | 2.107385e-55 | -8.615850e-47 |
| Msa0043980 | Msa0316390 | 0.865650 | 5.063235e-65 | -8.615850e-47 |
| Msa0044260 | Msa0316390 | 0.802823 | 4.672089e-49 | -8.615850e-47 |
| Msa0049750 | Msa0316390 | 0.809291 | 2.035168e-50 | -8.615850e-47 |
| Msa0077380 | Msa0316390 | 0.811498 | 6.794825e-51 | -8.615850e-47 |
| Msa0081630 | Msa0316390 | 0.827832 | 1.258037e-54 | -8.615850e-47 |
| Msa0083280 | Msa0316390 | 0.819134 | 1.361863e-52 | -8.615850e-47 |
| Msa0086420 | Msa0316390 | 0.806688 | 7.283208e-50 | -8.615850e-47 |
| Msa0090550 | Msa0316390 | 0.807943 | 3.948523e-50 | -8.615850e-47 |
| Msa0099910 | Msa0316390 | 0.805625 | 1.219307e-49 | -8.615850e-47 |
| Msa0104230 | Msa0316390 | 0.822361 | 2.468180e-53 | -8.615850e-47 |
| Msa0106850 | Msa0316390 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
| Msa0108760 | Msa0316390 | 0.804571 | 2.026215e-49 | -8.615850e-47 |
| Msa0115790 | Msa0316390 | 0.815167 | 1.061937e-51 | -8.615850e-47 |
| Msa0116080 | Msa0316390 | 0.807338 | 5.306613e-50 | -8.615850e-47 |
| Msa0117520 | Msa0316390 | 0.836447 | 9.306848e-57 | -8.615850e-47 |
| Msa0138020 | Msa0316390 | 0.827645 | 1.395679e-54 | -8.615850e-47 |
| Msa0160960 | Msa0316390 | 0.843520 | 1.331885e-58 | -8.615850e-47 |
| Msa0172080 | Msa0316390 | 0.809008 | 2.339088e-50 | -8.615850e-47 |
| Msa0175540 | Msa0316390 | 0.801227 | 9.945294e-49 | -8.615850e-47 |
| Msa0178570 | Msa0316390 | 0.815165 | 1.063166e-51 | -8.615850e-47 |
| Msa0186950 | Msa0316390 | 0.817759 | 2.791310e-52 | -8.615850e-47 |
| Msa0194080 | Msa0316390 | 0.809719 | 1.646867e-50 | -8.615850e-47 |
| Msa0196670 | Msa0316390 | 0.843530 | 1.324017e-58 | -8.615850e-47 |
| Msa0206010 | Msa0316390 | 0.808095 | 3.664372e-50 | -8.615850e-47 |
| Msa0207030 | Msa0316390 | 0.817498 | 3.195895e-52 | -8.615850e-47 |
| Msa0217680 | Msa0316390 | 0.807889 | 4.054658e-50 | -8.615850e-47 |
| Msa0218370 | Msa0316390 | 0.805537 | 1.272365e-49 | -8.615850e-47 |
| Msa0230610 | Msa0316390 | 0.818505 | 1.893082e-52 | -8.615850e-47 |
| Msa0243480 | Msa0316390 | 0.807265 | 5.499200e-50 | -8.615850e-47 |
| Msa0273770 | Msa0316390 | 0.815671 | 8.203686e-52 | -8.615850e-47 |
| Msa0277960 | Msa0316390 | 0.801979 | 6.971865e-49 | -8.615850e-47 |
| Msa0278580 | Msa0316390 | 0.811591 | 6.485917e-51 | -8.615850e-47 |
| Msa0285330 | Msa0316390 | 0.834020 | 3.815400e-56 | -8.615850e-47 |
| Msa0287410 | Msa0316390 | 0.829850 | 4.086376e-55 | -8.615850e-47 |
| Msa0287870 | Msa0316390 | 0.813852 | 2.074891e-51 | -8.615850e-47 |
| Msa0305410 | Msa0316390 | 0.831689 | 1.447988e-55 | -8.615850e-47 |
| Msa0308440 | Msa0316390 | 0.807552 | 4.779699e-50 | -8.615850e-47 |
| Msa0316390 | Msa0317960 | 0.807315 | 5.367246e-50 | -8.615850e-47 |
| Msa0316390 | Msa0326110 | 0.816574 | 5.155612e-52 | -8.615850e-47 |
| Msa0316390 | Msa0342410 | 0.802051 | 6.738320e-49 | -8.615850e-47 |
| Msa0316390 | Msa0376910 | 0.816006 | 6.905677e-52 | -8.615850e-47 |
| Msa0316390 | Msa0395750 | 0.837258 | 5.779767e-57 | -8.615850e-47 |
| Msa0316390 | Msa0398670 | 0.814729 | 1.328378e-51 | -8.615850e-47 |
| Msa0316390 | Msa0431900 | 0.806320 | 8.710931e-50 | -8.615850e-47 |
| Msa0316390 | Msa0439980 | 0.826837 | 2.178472e-54 | -8.615850e-47 |
| Msa0316390 | Msa0457960 | 0.815814 | 7.621237e-52 | -8.615850e-47 |
| Msa0316390 | Msa0471900 | 0.803761 | 2.987416e-49 | -8.615850e-47 |
| Msa0316390 | Msa0518170 | 0.811599 | 6.458775e-51 | -8.615850e-47 |
| Msa0316390 | Msa0520770 | 0.802510 | 5.420481e-49 | -8.615850e-47 |
| Msa0316390 | Msa0521270 | 0.831812 | 1.349962e-55 | -8.615850e-47 |
| Msa0316390 | Msa0527740 | 0.813355 | 2.669658e-51 | -8.615850e-47 |
| Msa0316390 | Msa0527890 | 0.811168 | 8.011654e-51 | -8.615850e-47 |
| Msa0316390 | Msa0528990 | 0.803567 | 3.277256e-49 | -8.615850e-47 |
| Msa0316390 | Msa0530560 | 0.802231 | 6.187926e-49 | -8.615850e-47 |
| Msa0316390 | Msa0542260 | 0.809184 | 2.145518e-50 | -8.615850e-47 |
| Msa0316390 | Msa0564850 | 0.859329 | 4.461183e-63 | -8.615850e-47 |
| Msa0316390 | Msa0566350 | 0.827836 | 1.255409e-54 | -8.615850e-47 |
| Msa0316390 | Msa0566750 | 0.824419 | 8.154568e-54 | -8.615850e-47 |
| Msa0316390 | Msa0574930 | 0.813673 | 2.271869e-51 | -8.615850e-47 |
| Msa0316390 | Msa0612760 | 0.811495 | 6.805636e-51 | -8.615850e-47 |
| Msa0316390 | Msa0624060 | 0.824464 | 7.956711e-54 | -8.615850e-47 |
| Msa0316390 | Msa0647030 | 0.807106 | 5.944250e-50 | -8.615850e-47 |
| Msa0316390 | Msa0658890 | 0.802804 | 4.714246e-49 | -8.615850e-47 |
| Msa0316390 | Msa0676130 | 0.825757 | 3.939277e-54 | -8.615850e-47 |
| Msa0316390 | Msa0676180 | 0.830928 | 2.227673e-55 | -8.615850e-47 |
| Msa0316390 | Msa0693520 | 0.808824 | 2.562155e-50 | -8.615850e-47 |
| Msa0316390 | Msa0703810 | 0.804770 | 1.841988e-49 | -8.615850e-47 |
| Msa0316390 | Msa0711450 | 0.818527 | 1.870811e-52 | -8.615850e-47 |
| Msa0316390 | Msa0750850 | 0.829602 | 4.696706e-55 | -8.615850e-47 |
| Msa0316390 | Msa0758260 | 0.806578 | 7.686367e-50 | -8.615850e-47 |
| Msa0316390 | Msa0795340 | 0.869969 | 2.078803e-66 | -8.615850e-47 |
| Msa0316390 | Msa0796250 | 0.825273 | 5.128395e-54 | -8.615850e-47 |
| Msa0316390 | Msa0832150 | 0.806794 | 6.919759e-50 | -8.615850e-47 |
| Msa0316390 | Msa0837890 | 0.815235 | 1.025627e-51 | -8.615850e-47 |
| Msa0316390 | Msa0842770 | 0.802925 | 4.450797e-49 | -8.615850e-47 |
| Msa0316390 | Msa0849040 | 0.824496 | 7.822109e-54 | -8.615850e-47 |
| Msa0316390 | Msa0858390 | 0.801823 | 7.507255e-49 | -8.615850e-47 |
| Msa0316390 | Msa0878220 | 0.815135 | 1.079496e-51 | -8.615850e-47 |
| Msa0316390 | Msa0905730 | 0.804929 | 1.705887e-49 | -8.615850e-47 |
| Msa0316390 | Msa0943970 | 0.815391 | 9.467782e-52 | -8.615850e-47 |
| Msa0316390 | Msa0944020 | 0.816142 | 6.440677e-52 | -8.615850e-47 |
| Msa0316390 | Msa1013070 | 0.811703 | 6.132837e-51 | -8.615850e-47 |
| Msa0316390 | Msa1026640 | 0.850064 | 2.161534e-60 | -8.615850e-47 |
| Msa0316390 | Msa1058170 | 0.807746 | 4.347194e-50 | -8.615850e-47 |
| Msa0316390 | Msa1089460 | 0.805413 | 1.350897e-49 | -8.615850e-47 |
| Msa0316390 | Msa1107260 | 0.842822 | 2.045268e-58 | -8.615850e-47 |
| Msa0316390 | Msa1117240 | 0.815838 | 7.528161e-52 | -8.615850e-47 |
| Msa0316390 | Msa1122150 | 0.848311 | 6.645408e-60 | -8.615850e-47 |
| Msa0316390 | Msa1137780 | 0.808058 | 3.732880e-50 | -8.615850e-47 |
| Msa0316390 | Msa1140630 | 0.827743 | 1.321865e-54 | -8.615850e-47 |
| Msa0316390 | Msa1150900 | 0.837659 | 4.561408e-57 | -8.615850e-47 |
| Msa0316390 | Msa1160560 | 0.832582 | 8.708757e-56 | -8.615850e-47 |
| Msa0316390 | Msa1206100 | 0.800415 | 1.456758e-48 | -8.615850e-47 |
| Msa0316390 | Msa1207310 | 0.838579 | 2.644276e-57 | -8.615850e-47 |
| Msa0316390 | Msa1208380 | 0.829813 | 4.171557e-55 | -8.615850e-47 |
| Msa0316390 | Msa1236440 | 0.817648 | 2.956719e-52 | -8.615850e-47 |
| Msa0316390 | Msa1256700 | 0.813288 | 2.761327e-51 | -8.615850e-47 |
| Msa0316390 | Msa1257750 | 0.830314 | 3.148729e-55 | -8.615850e-47 |
| Msa0316390 | Msa1277670 | 0.823080 | 1.678841e-53 | -8.615850e-47 |
| Msa0316390 | Msa1278580 | 0.830914 | 2.245174e-55 | -8.615850e-47 |
| Msa0316390 | Msa1291450 | 0.806982 | 6.312395e-50 | -8.615850e-47 |
| Msa0316390 | Msa1305660 | 0.831752 | 1.397126e-55 | -8.615850e-47 |
| Msa0316390 | Msa1315750 | 0.807765 | 4.307193e-50 | -8.615850e-47 |
| Msa0316390 | Msa1328520 | 0.801173 | 1.020048e-48 | -8.615850e-47 |
| Msa0316390 | Msa1329200 | 0.831211 | 1.898367e-55 | -8.615850e-47 |
| Msa0316390 | Msa1329550 | 0.800230 | 1.588832e-48 | -8.615850e-47 |
| Msa0316390 | Msa1331320 | 0.863311 | 2.725161e-64 | -8.615850e-47 |
| Msa0316390 | Msa1335230 | 0.805290 | 1.433945e-49 | -8.615850e-47 |
| Msa0316390 | Msa1336290 | 0.803182 | 3.938613e-49 | -8.615850e-47 |
| Msa0316390 | Msa1346840 | 0.808477 | 3.038436e-50 | -8.615850e-47 |
| Msa0316390 | Msa1358500 | 0.802127 | 6.502087e-49 | -8.615850e-47 |
| Msa0316390 | Msa1368610 | 0.806278 | 8.888884e-50 | -8.615850e-47 |
| Msa0316390 | Msa1372240 | 0.813612 | 2.344041e-51 | -8.615850e-47 |
| Msa0316390 | Msa1378410 | 0.821206 | 4.566521e-53 | -8.615850e-47 |
| Msa0316390 | Msa1401990 | 0.831263 | 1.843207e-55 | -8.615850e-47 |
| Msa0316390 | Msa1407600 | 0.801496 | 8.760146e-49 | -8.615850e-47 |
| Msa0316390 | Msa1407760 | 0.818947 | 1.502090e-52 | -8.615850e-47 |
| Msa0316390 | Msa1419840 | 0.840784 | 7.055971e-58 | -8.615850e-47 |
| Msa0316390 | Msa1423820 | 0.813313 | 2.726794e-51 | -8.615850e-47 |
| Msa0316390 | Msa1428780 | 0.826838 | 2.177406e-54 | -8.615850e-47 |
| Msa0316390 | Msa1437330 | 0.807818 | 4.197115e-50 | -8.615850e-47 |
| Msa0316390 | Msa1437730 | 0.830768 | 2.437959e-55 | -8.615850e-47 |
| Msa0316390 | Msa1442790 | 0.800602 | 1.334752e-48 | -8.615850e-47 |
| Msa0316390 | Msa1442920 | 0.808692 | 2.733124e-50 | -8.615850e-47 |
| Msa0316390 | Msa1457620 | 0.811599 | 6.458775e-51 | -8.615850e-47 |
| Msa0316390 | Msa1458680 | 0.807624 | 4.614874e-50 | -8.615850e-47 |
| Msa0316390 | Msa1462290 | 0.810870 | 9.296896e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316390 | MtrunA17_Chr2g0288531 | 82.394 | 142 | 1 | 1 | 1 | 142 | 1 | 118 | 1.95e-78 | 228 |
| Msa0316390 | MtrunA17_Chr4g0024721 | 66.667 | 141 | 23 | 1 | 1 | 141 | 1 | 117 | 2.07e-65 | 194 |
| Msa0316390 | MtrunA17_Chr2g0322571 | 66.667 | 141 | 23 | 1 | 1 | 141 | 1 | 117 | 9.31e-65 | 193 |
| Msa0316390 | MtrunA17_Chr4g0056301 | 63.380 | 142 | 28 | 1 | 1 | 142 | 1 | 118 | 3.06e-60 | 181 |
| Msa0316390 | MtrunA17_Chr4g0019141 | 59.712 | 139 | 30 | 2 | 1 | 137 | 1 | 115 | 1.80e-49 | 154 |
| Msa0316390 | MtrunA17_Chr7g0260981 | 45.985 | 137 | 50 | 1 | 5 | 141 | 6 | 118 | 3.48e-40 | 130 |
| Msa0316390 | MtrunA17_Chr4g0069171 | 45.255 | 137 | 51 | 1 | 5 | 141 | 6 | 118 | 6.42e-40 | 130 |
| Msa0316390 | MtrunA17_Chr1g0194141 | 45.588 | 136 | 50 | 1 | 6 | 141 | 7 | 118 | 5.14e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316390 | AT4G21980.1 | 69.718 | 142 | 19 | 1 | 1 | 142 | 1 | 118 | 3.16e-67 | 199 |
| Msa0316390 | AT4G21980.2 | 69.718 | 142 | 19 | 1 | 1 | 142 | 16 | 133 | 5.80e-67 | 199 |
| Msa0316390 | AT1G62040.1 | 68.085 | 141 | 21 | 1 | 1 | 141 | 1 | 117 | 7.12e-66 | 196 |
| Msa0316390 | AT4G04620.3 | 69.014 | 142 | 20 | 1 | 1 | 142 | 1 | 118 | 7.75e-65 | 193 |
| Msa0316390 | AT4G04620.2 | 69.014 | 142 | 20 | 1 | 1 | 142 | 1 | 118 | 7.75e-65 | 193 |
| Msa0316390 | AT4G04620.1 | 69.014 | 142 | 20 | 1 | 1 | 142 | 1 | 118 | 7.75e-65 | 193 |
| Msa0316390 | AT2G05630.1 | 65.248 | 141 | 25 | 1 | 1 | 141 | 1 | 117 | 4.33e-63 | 189 |
| Msa0316390 | AT4G16520.2 | 63.121 | 141 | 28 | 1 | 1 | 141 | 1 | 117 | 1.79e-59 | 180 |
| Msa0316390 | AT4G16520.1 | 63.121 | 141 | 28 | 1 | 1 | 141 | 1 | 117 | 1.79e-59 | 180 |
| Msa0316390 | AT3G60640.1 | 61.268 | 142 | 31 | 1 | 1 | 142 | 1 | 118 | 1.50e-58 | 177 |
| Msa0316390 | AT2G05630.2 | 65.385 | 130 | 21 | 1 | 12 | 141 | 56 | 161 | 7.41e-57 | 175 |
| Msa0316390 | AT2G45170.2 | 60.140 | 143 | 32 | 2 | 1 | 142 | 1 | 119 | 1.69e-56 | 172 |
| Msa0316390 | AT2G45170.1 | 60.140 | 143 | 32 | 2 | 1 | 142 | 1 | 119 | 1.69e-56 | 172 |
| Msa0316390 | AT1G62040.2 | 62.832 | 113 | 18 | 1 | 1 | 113 | 1 | 89 | 6.67e-44 | 139 |
| Msa0316390 | AT4G16520.3 | 61.607 | 112 | 19 | 1 | 30 | 141 | 30 | 117 | 1.61e-41 | 134 |
| Msa0316390 | AT3G15580.1 | 47.445 | 137 | 48 | 1 | 5 | 141 | 3 | 115 | 1.50e-38 | 127 |
| Msa0316390 | AT3G06420.1 | 44.526 | 137 | 52 | 1 | 5 | 141 | 7 | 119 | 9.48e-36 | 120 |
Find 51 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAAAATCATCTACTTTA+TGG | 0.148905 | 2_4:+13499400 | Msa0316390:three_prime_UTR |
| TAATCGATGAATTTAGATTT+TGG | 0.191005 | 2_4:+13499344 | Msa0316390:three_prime_UTR |
| GTTTATATTGAATTGAAATT+AGG | 0.197923 | 2_4:-13496944 | None:intergenic |
| TATTCTTTGTGTGTTGCTTT+AGG | 0.216784 | 2_4:+13498907 | Msa0316390:CDS |
| TGATCGAATCGAAGTGAAAT+TGG | 0.243113 | 2_4:-13496990 | None:intergenic |
| GTTGGTCAATTTGTTCTAAT+TGG | 0.250077 | 2_4:+13498882 | Msa0316390:CDS |
| CATCCTTATGTTCTTCATAA+AGG | 0.263042 | 2_4:-13499141 | None:intergenic |
| AATTGAAATTAGGGTTTGTT+TGG | 0.264691 | 2_4:-13496934 | None:intergenic |
| AATTAGGGTTTGTTTGGGTT+TGG | 0.273530 | 2_4:-13496928 | None:intergenic |
| TTTATATTGAATTGAAATTA+GGG | 0.282883 | 2_4:-13496943 | None:intergenic |
| ATTAGGGTTTGTTTGGGTTT+GGG | 0.308222 | 2_4:-13496927 | None:intergenic |
| ATCCTTATGTTCTTCATAAA+GGG | 0.337341 | 2_4:-13499140 | None:intergenic |
| TTCAAGACTCAACATCCTTT+CGG | 0.352308 | 2_4:+13497176 | Msa0316390:CDS |
| GATCGAATCGAAGTGAAATT+GGG | 0.396149 | 2_4:-13496989 | None:intergenic |
| ATTGAAATTAGGGTTTGTTT+GGG | 0.407112 | 2_4:-13496933 | None:intergenic |
| GATGAAAGACGAAAGAATAA+TGG | 0.410914 | 2_4:-13497014 | None:intergenic |
| AATCTTACAGGTACTCTATC+AGG | 0.411891 | 2_4:-13497820 | None:intergenic |
| GTGTTGTGTGCAGGTGATTG+TGG | 0.446452 | 2_4:+13497909 | Msa0316390:intron |
| TACAGTGGAGAGAACACCTT+TGG | 0.449519 | 2_4:+13499187 | Msa0316390:CDS |
| GTCCCAGCTGACTTGTCTGT+TGG | 0.460647 | 2_4:+13498864 | Msa0316390:CDS |
| GTCCCAGCTGACTTGTCTGT+TGG | 0.460647 | 2_4:+13498936 | Msa0316390:CDS |
| GCGAAGCGCGGTTGGTTACA+AGG | 0.461129 | 2_4:+13499444 | Msa0316390:three_prime_UTR |
| GTTAATGCATGTTTGAATTG+TGG | 0.467963 | 2_4:+13499366 | Msa0316390:three_prime_UTR |
| TGCCCTTTATGAAGAACATA+AGG | 0.471436 | 2_4:+13499138 | Msa0316390:CDS |
| GAAAGGATGTTGAGTCTTGA+AGG | 0.484284 | 2_4:-13497174 | None:intergenic |
| TGATAACAGCGAAGCGCGGT+TGG | 0.488813 | 2_4:+13499436 | Msa0316390:three_prime_UTR |
| GAAAACACTCTACCTCCAAC+TGG | 0.492327 | 2_4:+13499026 | Msa0316390:CDS |
| TGACCAACAGACAAGTCAGC+TGG | 0.519715 | 2_4:-13498867 | None:intergenic |
| TGACCAACAGACAAGTCAGC+TGG | 0.519715 | 2_4:-13498939 | None:intergenic |
| GAGAGCTATATACAGAAAGA+AGG | 0.536911 | 2_4:-13499236 | None:intergenic |
| GCTGGATACTTACCAGTTGG+AGG | 0.558063 | 2_4:-13499038 | None:intergenic |
| AATTAAGCTCAGTGCAGAGA+AGG | 0.558355 | 2_4:+13498986 | Msa0316390:CDS |
| ATGTTTGAATTGTGGTTGCT+CGG | 0.570274 | 2_4:+13499374 | Msa0316390:three_prime_UTR |
| CAGGTGATTGTGGAGAAAGC+TGG | 0.570859 | 2_4:+13497919 | Msa0316390:intron |
| GTATATGGCAGAAAGAAGAC+AGG | 0.574538 | 2_4:+13497768 | Msa0316390:intron |
| TATCTCAAATTATGCCTAGT+GGG | 0.579404 | 2_4:-13499212 | None:intergenic |
| GAACACCTTTGGTTCCCACT+AGG | 0.580132 | 2_4:+13499198 | Msa0316390:CDS |
| TTATGCCTAGTGGGAACCAA+AGG | 0.589647 | 2_4:-13499203 | None:intergenic |
| ATTTGCCATGTATTTGACAA+TGG | 0.591172 | 2_4:-13499270 | None:intergenic |
| AAAGGTGTTCTCTCCACTGT+AGG | 0.593040 | 2_4:-13499185 | None:intergenic |
| GCAGTCCATTGTCAAATACA+TGG | 0.593173 | 2_4:+13499265 | Msa0316390:three_prime_UTR |
| TTATGAAGAACATAAGGATG+AGG | 0.600323 | 2_4:+13499144 | Msa0316390:CDS |
| GACCAACAGACAAGTCAGCT+GGG | 0.605256 | 2_4:-13498866 | None:intergenic |
| GACCAACAGACAAGTCAGCT+GGG | 0.605256 | 2_4:-13498938 | None:intergenic |
| ATCGAATCGAAGTGAAATTG+GGG | 0.606503 | 2_4:-13496988 | None:intergenic |
| GAAGAACATAAGGATGAGGA+TGG | 0.616176 | 2_4:+13499148 | Msa0316390:CDS |
| TTATCTCAAATTATGCCTAG+TGG | 0.627502 | 2_4:-13499213 | None:intergenic |
| CAGACAAGTCAGCTGGGACA+AGG | 0.641093 | 2_4:-13498860 | None:intergenic |
| CAGACAAGTCAGCTGGGACA+AGG | 0.641093 | 2_4:-13498932 | None:intergenic |
| TTTCTTTACATGACCTACAG+TGG | 0.650715 | 2_4:+13499172 | Msa0316390:CDS |
| TTAATGATAACAGCGAAGCG+CGG | 0.668116 | 2_4:+13499432 | Msa0316390:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTGAATTGAAATTA+GGG | - | chr2_4:13496946-13496965 | None:intergenic | 10.0% |
| !! | GTTTATATTGAATTGAAATT+AGG | - | chr2_4:13496947-13496966 | None:intergenic | 15.0% |
| !! | ATTAATAATAAATTACCGAA+AGG | - | chr2_4:13497194-13497213 | None:intergenic | 15.0% |
| !! | TATAACAAAGAATAGAAAAT+TGG | - | chr2_4:13498090-13498109 | None:intergenic | 15.0% |
| !! | AGAGAAAAAGATTAGAAATT+TGG | - | chr2_4:13497091-13497110 | None:intergenic | 20.0% |
| !!! | TCAATTTTTAATCATGTCTA+AGG | + | chr2_4:13497148-13497167 | Msa0316390:exon | 20.0% |
| !!! | ATTTAGGGTTTTTTACTATA+CGG | + | chr2_4:13497338-13497357 | Msa0316390:intron | 20.0% |
| !!! | TAATGAAGTATTGCTAAATA+TGG | + | chr2_4:13497885-13497904 | Msa0316390:intron | 20.0% |
| !! | AATCAGAATTTAACAGAAAA+AGG | + | chr2_4:13498470-13498489 | Msa0316390:intron | 20.0% |
| !!! | TAATCGATGAATTTAGATTT+TGG | + | chr2_4:13499344-13499363 | Msa0316390:three_prime_UTR | 20.0% |
| !! | ATTGAAATTAGGGTTTGTTT+GGG | - | chr2_4:13496936-13496955 | None:intergenic | 25.0% |
| !! | AATTGAAATTAGGGTTTGTT+TGG | - | chr2_4:13496937-13496956 | None:intergenic | 25.0% |
| ! | ATTCATCTGATTGAAATTGT+TGG | + | chr2_4:13497298-13497317 | Msa0316390:intron | 25.0% |
| ! | TTCATCTGATTGAAATTGTT+GGG | + | chr2_4:13497299-13497318 | Msa0316390:intron | 25.0% |
| ! | ACTGTGTGATGATTAAATTT+AGG | + | chr2_4:13497322-13497341 | Msa0316390:intron | 25.0% |
| ! | CTGTGTGATGATTAAATTTA+GGG | + | chr2_4:13497323-13497342 | Msa0316390:intron | 25.0% |
| ! | AATTTCATCGAATAACTAAC+AGG | - | chr2_4:13497385-13497404 | None:intergenic | 25.0% |
| ! | TTGCTTATAATAGTGATCAT+AGG | + | chr2_4:13497404-13497423 | Msa0316390:intron | 25.0% |
| ! | TGCTTATAATAGTGATCATA+GGG | + | chr2_4:13497405-13497424 | Msa0316390:intron | 25.0% |
| !! | TTTGAAAACCCTTTGTTTAT+TGG | + | chr2_4:13497721-13497740 | Msa0316390:intron | 25.0% |
| ! | ATTCAAGTCCAATAAACAAA+GGG | - | chr2_4:13497732-13497751 | None:intergenic | 25.0% |
| ! | TATTCAAGTCCAATAAACAA+AGG | - | chr2_4:13497733-13497752 | None:intergenic | 25.0% |
| !! | ACAGTGTTATGTTTTGTATA+TGG | + | chr2_4:13497753-13497772 | Msa0316390:intron | 25.0% |
| ! | CAGGACAAAATAATATTCTT+AGG | - | chr2_4:13498026-13498045 | None:intergenic | 25.0% |
| !! | ATTTTGTCCTGAATTTTGTT+CGG | + | chr2_4:13498035-13498054 | Msa0316390:intron | 25.0% |
| !! | GATTTCTTGAAGATTTTGAA+AGG | + | chr2_4:13498062-13498081 | Msa0316390:intron | 25.0% |
| ! | TGTTATATAAATCGAGTGTT+AGG | + | chr2_4:13498103-13498122 | Msa0316390:intron | 25.0% |
| !! | TCTGTGTTTTGTAATATTGT+TGG | + | chr2_4:13498228-13498247 | Msa0316390:intron | 25.0% |
| !! | AGAATATCAATTTTGCATTC+TGG | - | chr2_4:13498301-13498320 | None:intergenic | 25.0% |
| !!! | AATCTTGTTTTTTGCCAATT+TGG | + | chr2_4:13499068-13499087 | Msa0316390:intron | 25.0% |
| ! | GTTAATAATCACAACCAAAT+TGG | - | chr2_4:13499085-13499104 | None:intergenic | 25.0% |
| ! | ATCCTTATGTTCTTCATAAA+GGG | - | chr2_4:13499143-13499162 | None:intergenic | 25.0% |
| ! | CGATAAAATCATCTACTTTA+TGG | + | chr2_4:13499400-13499419 | Msa0316390:three_prime_UTR | 25.0% |
| GATGAAAGACGAAAGAATAA+TGG | - | chr2_4:13497017-13497036 | None:intergenic | 30.0% | |
| CATAGTGAGTATAATCTTAC+AGG | - | chr2_4:13497835-13497854 | None:intergenic | 30.0% | |
| AGAGGTAGTAAAGTATGATA+TGG | + | chr2_4:13498140-13498159 | Msa0316390:intron | 30.0% | |
| ATTGTTGGAAATATGAAGCA+TGG | + | chr2_4:13498243-13498262 | Msa0316390:intron | 30.0% | |
| ATTCTGTTGCATATTCGATT+TGG | + | chr2_4:13498316-13498335 | Msa0316390:intron | 30.0% | |
| AATATTAAACCAAGTCTCTG+CGG | + | chr2_4:13498518-13498537 | Msa0316390:intron | 30.0% | |
| TTCTTCAGATTTGTCCATAT+CGG | + | chr2_4:13498624-13498643 | Msa0316390:intron | 30.0% | |
| !! | TATTCTTTGTGTGTTGCTTT+AGG | + | chr2_4:13498835-13498854 | Msa0316390:intron | 30.0% |
| ! | GTTGGTCAATTTGTTCTAAT+TGG | + | chr2_4:13498882-13498901 | Msa0316390:CDS | 30.0% |
| !! | TATTCTTTGTGTGTTGCTTT+AGG | + | chr2_4:13498835-13498854 | Msa0316390:intron | 30.0% |
| GCAAAAAACAAGATTTCGTA+TGG | - | chr2_4:13499063-13499082 | None:intergenic | 30.0% | |
| CATCCTTATGTTCTTCATAA+AGG | - | chr2_4:13499144-13499163 | None:intergenic | 30.0% | |
| TTATGAAGAACATAAGGATG+AGG | + | chr2_4:13499144-13499163 | Msa0316390:CDS | 30.0% | |
| TATCTCAAATTATGCCTAGT+GGG | - | chr2_4:13499215-13499234 | None:intergenic | 30.0% | |
| TTATCTCAAATTATGCCTAG+TGG | - | chr2_4:13499216-13499235 | None:intergenic | 30.0% | |
| ATTTGCCATGTATTTGACAA+TGG | - | chr2_4:13499273-13499292 | None:intergenic | 30.0% | |
| GTTAATGCATGTTTGAATTG+TGG | + | chr2_4:13499366-13499385 | Msa0316390:three_prime_UTR | 30.0% | |
| ! | ATTAGGGTTTGTTTGGGTTT+GGG | - | chr2_4:13496930-13496949 | None:intergenic | 35.0% |
| ! | AATTAGGGTTTGTTTGGGTT+TGG | - | chr2_4:13496931-13496950 | None:intergenic | 35.0% |
| ATCGAATCGAAGTGAAATTG+GGG | - | chr2_4:13496991-13497010 | None:intergenic | 35.0% | |
| GATCGAATCGAAGTGAAATT+GGG | - | chr2_4:13496992-13497011 | None:intergenic | 35.0% | |
| TGATCGAATCGAAGTGAAAT+TGG | - | chr2_4:13496993-13497012 | None:intergenic | 35.0% | |
| TATTCTTTCGTCTTTCATCG+TGG | + | chr2_4:13497018-13497037 | Msa0316390:intron | 35.0% | |
| ATTCTTTCGTCTTTCATCGT+GGG | + | chr2_4:13497019-13497038 | Msa0316390:intron | 35.0% | |
| TTCAAGACTCAACATCCTTT+CGG | + | chr2_4:13497176-13497195 | Msa0316390:CDS | 35.0% | |
| AATCTTACAGGTACTCTATC+AGG | - | chr2_4:13497823-13497842 | None:intergenic | 35.0% | |
| ATCAAGACCGAACAAAATTC+AGG | - | chr2_4:13498045-13498064 | None:intergenic | 35.0% | |
| AAACCAGTATCAACTCAACA+AGG | - | chr2_4:13498171-13498190 | None:intergenic | 35.0% | |
| !! | ATATTCGATTTGGCCAAGTA+TGG | + | chr2_4:13498326-13498345 | Msa0316390:intron | 35.0% |
| !! | TATTCGATTTGGCCAAGTAT+GGG | + | chr2_4:13498327-13498346 | Msa0316390:intron | 35.0% |
| AGTCCAAAGATGTAAAGATG+TGG | - | chr2_4:13498415-13498434 | None:intergenic | 35.0% | |
| !! | TGCGGATATTTCTGGTAATT+TGG | + | chr2_4:13498536-13498555 | Msa0316390:intron | 35.0% |
| !! | TCTGGTAATTTGGTTTGAGA+AGG | + | chr2_4:13498546-13498565 | Msa0316390:intron | 35.0% |
| !! | CTGGTAATTTGGTTTGAGAA+GGG | + | chr2_4:13498547-13498566 | Msa0316390:intron | 35.0% |
| GAATACTGCATATGCATATG+TGG | + | chr2_4:13498569-13498588 | Msa0316390:intron | 35.0% | |
| TTAAACTAGAGTCTCATCTG+GGG | - | chr2_4:13498662-13498681 | None:intergenic | 35.0% | |
| GTTAAACTAGAGTCTCATCT+GGG | - | chr2_4:13498663-13498682 | None:intergenic | 35.0% | |
| TGTTAAACTAGAGTCTCATC+TGG | - | chr2_4:13498664-13498683 | None:intergenic | 35.0% | |
| ! | ACTCTAGTTTAACATCTTCC+CGG | + | chr2_4:13498670-13498689 | Msa0316390:intron | 35.0% |
| TTAACATTCAAGAGATGCTC+CGG | - | chr2_4:13498692-13498711 | None:intergenic | 35.0% | |
| GAAAATCAGATGATCAAGCT+TGG | + | chr2_4:13498730-13498749 | Msa0316390:intron | 35.0% | |
| ! | CACTGCAAATTTTCATGCTT+TGG | + | chr2_4:13498796-13498815 | Msa0316390:intron | 35.0% |
| ! | TGCAAATTTTCATGCTTTGG+TGG | + | chr2_4:13498799-13498818 | Msa0316390:intron | 35.0% |
| !! | ATGCTTTGGTGGATTCTAAT+TGG | + | chr2_4:13498810-13498829 | Msa0316390:intron | 35.0% |
| ! | CACTGAGCTTAATTCTTTTG+CGG | - | chr2_4:13498980-13498999 | None:intergenic | 35.0% |
| AAAACAAGATTTCGTATGGC+TGG | - | chr2_4:13499059-13499078 | None:intergenic | 35.0% | |
| TGCCCTTTATGAAGAACATA+AGG | + | chr2_4:13499138-13499157 | Msa0316390:CDS | 35.0% | |
| TTTCTTTACATGACCTACAG+TGG | + | chr2_4:13499172-13499191 | Msa0316390:CDS | 35.0% | |
| GAGAGCTATATACAGAAAGA+AGG | - | chr2_4:13499239-13499258 | None:intergenic | 35.0% | |
| ATGTTTGAATTGTGGTTGCT+CGG | + | chr2_4:13499374-13499393 | Msa0316390:three_prime_UTR | 35.0% | |
| GAAAGGATGTTGAGTCTTGA+AGG | - | chr2_4:13497177-13497196 | None:intergenic | 40.0% | |
| GTGATTGATTGTTGCAGTGT+CGG | + | chr2_4:13497568-13497587 | Msa0316390:intron | 40.0% | |
| ! | ATTAGCGTTCTAAACACGTG+TGG | - | chr2_4:13497681-13497700 | None:intergenic | 40.0% |
| GTATATGGCAGAAAGAAGAC+AGG | + | chr2_4:13497768-13497787 | Msa0316390:intron | 40.0% | |
| AAATATGGTGTGTTGTGTGC+AGG | + | chr2_4:13497900-13497919 | Msa0316390:intron | 40.0% | |
| !! | CATCCTTGTTGAGTTGATAC+TGG | + | chr2_4:13498165-13498184 | Msa0316390:intron | 40.0% |
| !! | ATTCGATTTGGCCAAGTATG+GGG | + | chr2_4:13498328-13498347 | Msa0316390:intron | 40.0% |
| ATAATACACTGCCCCATACT+TGG | - | chr2_4:13498342-13498361 | None:intergenic | 40.0% | |
| TATGCCCATCCTTAAATTGC+TGG | + | chr2_4:13498359-13498378 | Msa0316390:intron | 40.0% | |
| GTGACCAGCAATTTAAGGAT+GGG | - | chr2_4:13498366-13498385 | None:intergenic | 40.0% | |
| AGTGACCAGCAATTTAAGGA+TGG | - | chr2_4:13498367-13498386 | None:intergenic | 40.0% | |
| CGATAGTGACCAGCAATTTA+AGG | - | chr2_4:13498371-13498390 | None:intergenic | 40.0% | |
| ATCGTGTTAGATTTGTCCTC+TGG | + | chr2_4:13498387-13498406 | Msa0316390:intron | 40.0% | |
| GCACCACATCTTTACATCTT+TGG | + | chr2_4:13498409-13498428 | Msa0316390:intron | 40.0% | |
| GGTTAAGTTAACTGCCGATA+TGG | - | chr2_4:13498641-13498660 | None:intergenic | 40.0% | |
| TAACATTCAAGAGATGCTCC+GGG | - | chr2_4:13498691-13498710 | None:intergenic | 40.0% | |
| AATTAAGCTCAGTGCAGAGA+AGG | + | chr2_4:13498986-13499005 | Msa0316390:CDS | 40.0% | |
| GAAGAACATAAGGATGAGGA+TGG | + | chr2_4:13499148-13499167 | Msa0316390:CDS | 40.0% | |
| GCAGTCCATTGTCAAATACA+TGG | + | chr2_4:13499265-13499284 | Msa0316390:three_prime_UTR | 40.0% | |
| TTAATGATAACAGCGAAGCG+CGG | + | chr2_4:13499432-13499451 | Msa0316390:three_prime_UTR | 40.0% | |
| TCTGACACCTCTTCAATTCG+AGG | + | chr2_4:13497647-13497666 | Msa0316390:intron | 45.0% | |
| ACCTCTTCAATTCGAGGTGT+TGG | + | chr2_4:13497653-13497672 | Msa0316390:intron | 45.0% | |
| ACCAACACCTCGAATTGAAG+AGG | - | chr2_4:13497657-13497676 | None:intergenic | 45.0% | |
| TAGGCTTGTAGCTAGTGAAG+AGG | + | chr2_4:13498122-13498141 | Msa0316390:intron | 45.0% | |
| ! | TGCATTCTGGTGTCAGCTAT+TGG | - | chr2_4:13498288-13498307 | None:intergenic | 45.0% |
| ! | ATGTAAAGATGTGGTGCCAG+AGG | - | chr2_4:13498406-13498425 | None:intergenic | 45.0% |
| CAGAAATATCCGCAGAGACT+TGG | - | chr2_4:13498530-13498549 | None:intergenic | 45.0% | |
| CAAGTCTCTGCGGATATTTC+TGG | + | chr2_4:13498528-13498547 | Msa0316390:intron | 45.0% | |
| GAAAACACTCTACCTCCAAC+TGG | + | chr2_4:13499026-13499045 | Msa0316390:CDS | 45.0% | |
| ATGGCTGGATACTTACCAGT+TGG | - | chr2_4:13499044-13499063 | None:intergenic | 45.0% | |
| ATCAGAGCAGCTGTAACAAC+AGG | - | chr2_4:13499115-13499134 | None:intergenic | 45.0% | |
| !! | AAAGGTGTTCTCTCCACTGT+AGG | - | chr2_4:13499188-13499207 | None:intergenic | 45.0% |
| TACAGTGGAGAGAACACCTT+TGG | + | chr2_4:13499187-13499206 | Msa0316390:CDS | 45.0% | |
| TTATGCCTAGTGGGAACCAA+AGG | - | chr2_4:13499206-13499225 | None:intergenic | 45.0% | |
| !! | AAAAATCTTAATAAAATATA+TGG | - | chr2_4:13498444-13498463 | None:intergenic | 5.0% |
| GTGTCAGATGTCGACACATG+TGG | - | chr2_4:13497635-13497654 | None:intergenic | 50.0% | |
| GTGTTGTGTGCAGGTGATTG+TGG | + | chr2_4:13497909-13497928 | Msa0316390:intron | 50.0% | |
| CAGGTGATTGTGGAGAAAGC+TGG | + | chr2_4:13497919-13497938 | Msa0316390:intron | 50.0% | |
| ! | TCTGGTGTCAGCTATTGGAG+TGG | - | chr2_4:13498283-13498302 | None:intergenic | 50.0% |
| GACCAACAGACAAGTCAGCT+GGG | - | chr2_4:13498869-13498888 | None:intergenic | 50.0% | |
| TGACCAACAGACAAGTCAGC+TGG | - | chr2_4:13498870-13498889 | None:intergenic | 50.0% | |
| GACCAACAGACAAGTCAGCT+GGG | - | chr2_4:13498869-13498888 | None:intergenic | 50.0% | |
| TGACCAACAGACAAGTCAGC+TGG | - | chr2_4:13498870-13498889 | None:intergenic | 50.0% | |
| GCTGGATACTTACCAGTTGG+AGG | - | chr2_4:13499041-13499060 | None:intergenic | 50.0% | |
| AGAGCAGCTGTAACAACAGG+AGG | - | chr2_4:13499112-13499131 | None:intergenic | 50.0% | |
| ! | GAACACCTTTGGTTCCCACT+AGG | + | chr2_4:13499198-13499217 | Msa0316390:CDS | 50.0% |
| CAGACAAGTCAGCTGGGACA+AGG | - | chr2_4:13498863-13498882 | None:intergenic | 55.0% | |
| !! | GTCCCAGCTGACTTGTCTGT+TGG | + | chr2_4:13498864-13498883 | Msa0316390:CDS | 55.0% |
| CAGACAAGTCAGCTGGGACA+AGG | - | chr2_4:13498863-13498882 | None:intergenic | 55.0% | |
| !! | GTCCCAGCTGACTTGTCTGT+TGG | + | chr2_4:13498864-13498883 | Msa0316390:CDS | 55.0% |
| TGATAACAGCGAAGCGCGGT+TGG | + | chr2_4:13499436-13499455 | Msa0316390:three_prime_UTR | 55.0% | |
| ! | GCGAAGCGCGGTTGGTTACA+AGG | + | chr2_4:13499444-13499463 | Msa0316390:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13496914 | 13499701 | 13496914 | ID=Msa0316390;Name=Msa0316390 |
| chr2_4 | mRNA | 13496914 | 13499701 | 13496914 | ID=Msa0316390-mRNA-1;Parent=Msa0316390;Name=Msa0316390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=154|0.8|0.83|1|0.8|0.83|6|482|143 |
| chr2_4 | exon | 13496914 | 13497036 | 13496914 | ID=Msa0316390-mRNA-1:exon:5085;Parent=Msa0316390-mRNA-1 |
| chr2_4 | exon | 13497130 | 13497197 | 13497130 | ID=Msa0316390-mRNA-1:exon:5086;Parent=Msa0316390-mRNA-1 |
| chr2_4 | exon | 13497779 | 13497834 | 13497779 | ID=Msa0316390-mRNA-1:exon:5087;Parent=Msa0316390-mRNA-1 |
| chr2_4 | exon | 13497922 | 13497974 | 13497922 | ID=Msa0316390-mRNA-1:exon:5088;Parent=Msa0316390-mRNA-1 |
| chr2_4 | exon | 13498857 | 13499047 | 13498857 | ID=Msa0316390-mRNA-1:exon:5089;Parent=Msa0316390-mRNA-1 |
| chr2_4 | exon | 13499125 | 13499701 | 13499125 | ID=Msa0316390-mRNA-1:exon:5090;Parent=Msa0316390-mRNA-1 |
| chr2_4 | five_prime_UTR | 13496914 | 13497036 | 13496914 | ID=Msa0316390-mRNA-1:five_prime_utr;Parent=Msa0316390-mRNA-1 |
| chr2_4 | five_prime_UTR | 13497130 | 13497160 | 13497130 | ID=Msa0316390-mRNA-1:five_prime_utr;Parent=Msa0316390-mRNA-1 |
| chr2_4 | CDS | 13497161 | 13497197 | 13497161 | ID=Msa0316390-mRNA-1:cds;Parent=Msa0316390-mRNA-1 |
| chr2_4 | CDS | 13497779 | 13497834 | 13497779 | ID=Msa0316390-mRNA-1:cds;Parent=Msa0316390-mRNA-1 |
| chr2_4 | CDS | 13497922 | 13497974 | 13497922 | ID=Msa0316390-mRNA-1:cds;Parent=Msa0316390-mRNA-1 |
| chr2_4 | CDS | 13498857 | 13499047 | 13498857 | ID=Msa0316390-mRNA-1:cds;Parent=Msa0316390-mRNA-1 |
| chr2_4 | CDS | 13499125 | 13499219 | 13499125 | ID=Msa0316390-mRNA-1:cds;Parent=Msa0316390-mRNA-1 |
| chr2_4 | three_prime_UTR | 13499220 | 13499701 | 13499220 | ID=Msa0316390-mRNA-1:three_prime_utr;Parent=Msa0316390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
