AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616330 MtrunA17_Chr8g0375771 97.368 342 9 0 1 342 114 455 0.0 684
Msa0616330 MtrunA17_Chr5g0403581 44.218 294 148 6 47 329 77 365 2.14e-78 244
Msa0616330 MtrunA17_Chr8g0373601 41.695 295 152 8 48 329 79 366 4.69e-74 233
Msa0616330 MtrunA17_Chr5g0444251 31.674 221 133 4 53 263 46 258 2.54e-24 100
Msa0616330 MtrunA17_Chr2g0313871 25.116 215 144 6 61 268 113 317 3.79e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616330 AT4G38460.1 64.605 291 93 2 45 335 42 322 1.28e-130 376
Msa0616330 AT4G36810.1 44.554 303 148 7 42 329 68 365 7.72e-82 253
Msa0616330 AT2G18620.1 39.093 353 187 9 1 333 1 345 3.64e-81 251
Msa0616330 AT2G18640.1 43.333 300 150 10 48 334 79 371 2.29e-71 226
Msa0616330 AT2G23800.1 40.667 300 158 10 48 334 83 375 2.12e-66 214
Msa0616330 AT3G20160.1 39.677 310 160 9 43 333 41 342 4.19e-66 212
Msa0616330 AT3G14550.3 42.424 297 150 7 48 329 64 354 5.80e-64 207
Msa0616330 AT3G14550.1 42.424 297 150 7 48 329 64 354 5.80e-64 207
Msa0616330 AT3G14550.2 42.424 297 150 7 48 329 64 354 5.80e-64 207
Msa0616330 AT3G20160.2 39.535 301 145 9 43 333 41 314 1.41e-63 204
Msa0616330 AT3G14530.1 42.761 297 149 7 48 329 64 354 7.06e-63 204
Msa0616330 AT3G14510.1 42.599 277 138 7 68 329 8 278 1.32e-62 201
Msa0616330 AT3G29430.1 41.231 325 166 11 24 329 33 351 9.79e-62 201
Msa0616330 AT3G32040.1 42.712 295 152 7 48 329 64 354 5.64e-61 199
Msa0616330 AT1G49530.1 39.672 305 157 8 52 333 34 334 7.97e-60 196
Msa0616330 AT1G17050.1 26.490 151 102 3 119 268 171 313 1.19e-11 65.9

Find 134 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTTATGTAGAGGTTTA+TGG 0.097267 4_2:+66149039 Msa0616330:CDS
TCAACCACTTATAGTTCTTT+TGG 0.229670 4_2:+66149233 Msa0616330:three_prime_UTR
TTGGATGGATTTGAGAAGTA+TGG 0.258489 4_2:+66149117 Msa0616330:CDS
AGCAAAGGCTTTGGAGGAAT+TGG 0.259488 4_2:+66149098 Msa0616330:CDS
CGGTGTTGACATGGCAATTC+TGG 0.263672 4_2:+66148642 Msa0616330:CDS
TGCTATTGTAGATGATATTT+TGG 0.266530 4_2:+66148969 Msa0616330:CDS
TGTATCAATCCAACTGCATT+TGG 0.293189 4_2:-66148826 None:intergenic
TCTGATTAATCTGCCCCATT+AGG 0.299471 4_2:-66147765 None:intergenic
GGCTCCACTGGAATGGCTGC+AGG 0.305044 4_2:+66148778 Msa0616330:CDS
AATGGCTGCAGGGCAGTTCT+TGG 0.308107 4_2:+66148789 Msa0616330:CDS
AGAGTTATGTAGAGGTTTAT+GGG 0.313757 4_2:+66149040 Msa0616330:CDS
GGCTGCTCCTTCTCCTTCTT+CGG 0.326678 4_2:+66147690 Msa0616330:CDS
GGCATTGTCGCAATTGTAAA+AGG 0.335180 4_2:-66147604 None:intergenic
GGGCAGTTCTTGGACCTTGA+AGG 0.335310 4_2:+66148799 Msa0616330:CDS
CGTAATTCACAAAACTATAG+AGG 0.352365 4_2:-66149155 None:intergenic
GGCAGTTCTTGGACCTTGAA+GGG 0.352960 4_2:+66148800 Msa0616330:CDS
CTGATTAATCTGCCCCATTA+GGG 0.371204 4_2:-66147764 None:intergenic
GGATGAGATTCGGAGACTTT+CGG 0.384911 4_2:-66147648 None:intergenic
TGCCATGTCAACACCGTAGA+TGG 0.385514 4_2:-66148635 None:intergenic
CCGTAGATGGCGTGGTTTGA+GGG 0.385791 4_2:-66148622 None:intergenic
TCTAAAATGCAATATTCATA+AGG 0.392996 4_2:-66149394 None:intergenic
CAAGCAGAGATACACATAAC+AGG 0.399894 4_2:-66147880 None:intergenic
TTCCCATCTTTATCTCCCTC+AGG 0.406329 4_2:-66149006 None:intergenic
GACGTATTGGACTTCCCTAA+TGG 0.407597 4_2:+66147750 Msa0616330:CDS
ACTTTGATTTGAAGACGTAT+TGG 0.408292 4_2:+66147737 Msa0616330:CDS
ACACGAAGTACACGGGGTTC+AGG 0.414466 4_2:-66148730 None:intergenic
GTATCAATCCAACTGCATTT+GGG 0.418171 4_2:-66148825 None:intergenic
ATAGAGAGACTGAGGAGGTA+TGG 0.421597 4_2:+66148925 Msa0616330:CDS
AGAACTTAGAGCAAAGGCTT+TGG 0.423144 4_2:+66149089 Msa0616330:CDS
GCCCGCTGTGTGGGCTCCAC+TGG 0.424889 4_2:+66148766 Msa0616330:CDS
ACGTATTGGACTTCCCTAAT+GGG 0.427242 4_2:+66147751 Msa0616330:CDS
GAAAGAAGATTACCATTTCA+AGG 0.432327 4_2:-66147951 None:intergenic
AGCACGGGACTAGTCCTCTT+TGG 0.433750 4_2:-66149543 None:intergenic
GCAGCCATGGAGCAGCGAAT+TGG 0.434085 4_2:-66147673 None:intergenic
GGTGATGCACTCTTTCCCCT+TGG 0.434286 4_2:+66148667 Msa0616330:CDS
TGCAGTGTGTGGAGGGTTGT+TGG 0.437777 4_2:+66148882 Msa0616330:CDS
AGATGGCGTGGTTTGAGGGC+TGG 0.460200 4_2:-66148618 None:intergenic
ACTTAGAGCAAAGGCTTTGG+AGG 0.466634 4_2:+66149092 Msa0616330:CDS
CGAATTGGAAGGATGAGATT+CGG 0.467097 4_2:-66147658 None:intergenic
TTGAGGGAACTGAACTTCAA+TGG 0.473114 4_2:-66147800 None:intergenic
CTGTGTGGGCTCCACTGGAA+TGG 0.474784 4_2:+66148771 Msa0616330:CDS
TCTCTCTATCTCATCATCTT+CGG 0.478860 4_2:-66148911 None:intergenic
GCAGTTCTTGGACCTTGAAG+GGG 0.479193 4_2:+66148801 Msa0616330:CDS
CACTGCATGTGCCCTTGAAA+TGG 0.480852 4_2:+66147939 Msa0616330:CDS
CGGTATTCTGCCCTTGCTAA+AGG 0.483034 4_2:+66147841 Msa0616330:CDS
AAACCTGAGGGAGATAAAGA+TGG 0.484680 4_2:+66149003 Msa0616330:CDS
CAATGCCCTCATTAAACATC+GGG 0.486811 4_2:+66147620 Msa0616330:CDS
TCCAGTGGAGCCCACACAGC+GGG 0.487936 4_2:-66148767 None:intergenic
TGGGGTTAACTAAGAGAGTA+AGG 0.488112 4_2:+66149442 Msa0616330:three_prime_UTR
ATTTAGAGGTGGGGCAGTAA+TGG 0.490613 4_2:+66149517 Msa0616330:three_prime_UTR
TTGACGAGGCCAGTAGATGA+TGG 0.492007 4_2:+66149199 Msa0616330:CDS
ACCGTAGATGGCGTGGTTTG+AGG 0.494704 4_2:-66148623 None:intergenic
CCCTCAAACCACGCCATCTA+CGG 0.495109 4_2:+66148622 Msa0616330:CDS
AGAAGGAGAAGGAGCAGCCA+TGG 0.495191 4_2:-66147686 None:intergenic
AGGAGGTATGGTAGAGCTGT+TGG 0.495677 4_2:+66148937 Msa0616330:CDS
CGTGGTTTGAGGGCTGGCCA+CGG 0.508134 4_2:-66148612 None:intergenic
CAGTTCTTGGACCTTGAAGG+GGG 0.508920 4_2:+66148802 Msa0616330:CDS
CCTTCCAATTCGCTGCTCCA+TGG 0.514052 4_2:+66147669 Msa0616330:CDS
GTGTGTGGAGGGTTGTTGGC+CGG 0.518361 4_2:+66148886 Msa0616330:CDS
ATCGCTTAGCACCTTTAGCA+AGG 0.521626 4_2:-66147852 None:intergenic
TATCTCATCATCTTCGGCAC+CGG 0.522001 4_2:-66148905 None:intergenic
CGCCATCTACGGTGTTGACA+TGG 0.522018 4_2:+66148633 Msa0616330:CDS
ATGATGAGATAGAGAGACTG+AGG 0.525344 4_2:+66148917 Msa0616330:CDS
TTCAAGAACCCATCATCTAC+TGG 0.527028 4_2:-66149208 None:intergenic
GCTCCACTGGAATGGCTGCA+GGG 0.527665 4_2:+66148779 Msa0616330:CDS
GTAATTCACAAAACTATAGA+GGG 0.531875 4_2:-66149154 None:intergenic
GGGCTGGCCACGGCGTGACA+AGG 0.532295 4_2:-66148602 None:intergenic
TGACAAGGAGTCATCCATGC+AGG 0.533253 4_2:-66148587 None:intergenic
TCATCCAAAAGAACTATAAG+TGG 0.534078 4_2:-66149237 None:intergenic
ATAGCTTCATATATCTGTTG+AGG 0.536580 4_2:-66147817 None:intergenic
CAGAGGGAAGAGTTATGTAG+AGG 0.537549 4_2:+66149032 Msa0616330:CDS
GATCGGATGGAAACCGAAGA+AGG 0.542003 4_2:-66147703 None:intergenic
GAAACACCCGATGTTTAATG+AGG 0.542457 4_2:-66147626 None:intergenic
GAGTTATGTAGAGGTTTATG+GGG 0.542842 4_2:+66149041 Msa0616330:CDS
AACAATGTGTTGAAATCCAA+GGG 0.546111 4_2:-66148683 None:intergenic
CATTTCAAGGGCACATGCAG+TGG 0.547793 4_2:-66147938 None:intergenic
TAGCTTCATATATCTGTTGA+GGG 0.547993 4_2:-66147816 None:intergenic
AAGGCTTTGGAGGAATTGGA+TGG 0.548932 4_2:+66149102 Msa0616330:CDS
GAGTGTTCTGCAGTGTGTGG+AGG 0.552684 4_2:+66148874 Msa0616330:CDS
AAGGGCACATGCAGTGGGGA+AGG 0.558957 4_2:-66147932 None:intergenic
CAGTGAGTTTGGCGAAATCA+TGG 0.559282 4_2:+66149261 Msa0616330:three_prime_UTR
AAAGAAGATTACCATTTCAA+GGG 0.560180 4_2:-66147950 None:intergenic
GTACACGGGGTTCAGGTACA+AGG 0.565661 4_2:-66148723 None:intergenic
AGAAATTGTCATAATCAGAG+TGG 0.568045 4_2:-66149341 None:intergenic
ATCATCATGTATCAATGAAG+CGG 0.568247 4_2:-66148560 None:intergenic
ATGCAGTGGGGAAGGCAGCA+AGG 0.568393 4_2:-66147924 None:intergenic
AACCTGAGGGAGATAAAGAT+GGG 0.571753 4_2:+66149004 Msa0616330:CDS
ATGAGATAGAGAGACTGAGG+AGG 0.573192 4_2:+66148920 Msa0616330:CDS
ATTTCAAGGGCACATGCAGT+GGG 0.576737 4_2:-66147937 None:intergenic
CAGCAATGACACGAAGTACA+CGG 0.576879 4_2:-66148738 None:intergenic
AGTGTTCTGCAGTGTGTGGA+GGG 0.579045 4_2:+66148875 Msa0616330:CDS
GGCTGAAGAACTTAGAGCAA+AGG 0.579804 4_2:+66149083 Msa0616330:CDS
CTGCCCTGCAGCCATTCCAG+TGG 0.580181 4_2:-66148782 None:intergenic
GCTGAGATAGCCCGCTGTGT+GGG 0.580286 4_2:+66148757 Msa0616330:CDS
AGCAATGACACGAAGTACAC+GGG 0.582072 4_2:-66148737 None:intergenic
GTTGACATGGCAATTCTGGC+GGG 0.592172 4_2:+66148646 Msa0616330:CDS
GACTGTGAATCAATCTAAAG+CGG 0.594820 4_2:+66149479 Msa0616330:three_prime_UTR
TCGCTTAGCACCTTTAGCAA+GGG 0.604739 4_2:-66147851 None:intergenic
GAAATTGTCATAATCAGAGT+GGG 0.607421 4_2:-66149340 None:intergenic
CCATGGAGCAGCGAATTGGA+AGG 0.607622 4_2:-66147669 None:intergenic
ACATGATGATCTTCCCTGCA+TGG 0.608437 4_2:+66148573 Msa0616330:CDS
TTCTCATAAAGACTAGAGCA+CGG 0.609386 4_2:-66149559 None:intergenic
TGACGAGGCCAGTAGATGAT+GGG 0.612003 4_2:+66149200 Msa0616330:exon
ACAATGCCCTCATTAAACAT+CGG 0.612387 4_2:+66147619 Msa0616330:CDS
GGGTTCAGGTACAAGGTCAG+AGG 0.613058 4_2:-66148716 None:intergenic
ATGGAAACCGAAGAAGGAGA+AGG 0.615829 4_2:-66147697 None:intergenic
TGTTGACATGGCAATTCTGG+CGG 0.616197 4_2:+66148645 Msa0616330:CDS
AAACAATGTGTTGAAATCCA+AGG 0.617990 4_2:-66148684 None:intergenic
AAGCAGAGATACACATAACA+GGG 0.618552 4_2:-66147879 None:intergenic
TCTCATAAAGACTAGAGCAC+GGG 0.620462 4_2:-66149558 None:intergenic
GGAAGAGAGACTGAAACCTG+AGG 0.622933 4_2:+66148990 Msa0616330:CDS
GATGACTCCTTGTCACGCCG+TGG 0.624688 4_2:+66148595 Msa0616330:CDS
GACAAGGAGTCATCCATGCA+GGG 0.630249 4_2:-66148586 None:intergenic
GCGGAGTGTTCTGCAGTGTG+TGG 0.632086 4_2:+66148871 Msa0616330:CDS
TGCTGAGATAGCCCGCTGTG+TGG 0.636542 4_2:+66148756 Msa0616330:CDS
GAAGAGAGACTGAAACCTGA+GGG 0.638321 4_2:+66148991 Msa0616330:CDS
AAACACCCGATGTTTAATGA+GGG 0.640367 4_2:-66147625 None:intergenic
TGTCAACACCGTAGATGGCG+TGG 0.643803 4_2:-66148630 None:intergenic
GGCAGTAATGGATACCAAAG+AGG 0.647150 4_2:+66149529 Msa0616330:three_prime_UTR
GCAGAGATACACATAACAGG+GGG 0.650726 4_2:-66147877 None:intergenic
AGAGATACACATAACAGGGG+GGG 0.650807 4_2:-66147875 None:intergenic
TAGAAGTTTCAATGTTGACG+AGG 0.655023 4_2:+66149185 Msa0616330:CDS
CGTATTGGACTTCCCTAATG+GGG 0.660461 4_2:+66147752 Msa0616330:CDS
GGTTCAGGTACAAGGTCAGA+GGG 0.665434 4_2:-66148715 None:intergenic
AACAGATATATGAAGCTATG+CGG 0.703508 4_2:+66147821 Msa0616330:CDS
TAATTCACAAAACTATAGAG+GGG 0.709745 4_2:-66149153 None:intergenic
AGCAGAGATACACATAACAG+GGG 0.710591 4_2:-66147878 None:intergenic
TTCCAGTGGAGCCCACACAG+CGG 0.722527 4_2:-66148768 None:intergenic
ACAATGTGTTGAAATCCAAG+GGG 0.726426 4_2:-66148682 None:intergenic
TGAGTTTGGCGAAATCATGG+TGG 0.733549 4_2:+66149264 Msa0616330:three_prime_UTR
CAGAGATACACATAACAGGG+GGG 0.735594 4_2:-66147876 None:intergenic
TTTCAAGGGCACATGCAGTG+GGG 0.742785 4_2:-66147936 None:intergenic
ATAATCAGAGTGGGACACTG+CGG 0.762322 4_2:-66149331 None:intergenic
GCAATGACACGAAGTACACG+GGG 0.769728 4_2:-66148736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTTTGGTATTTCTTAT+TGG + chr4_2:66148418-66148437 Msa0616330:intron 20.0%
!!! ATGATAAACTGTATGAATTT+TGG + chr4_2:66148506-66148525 Msa0616330:intron 20.0%
!! TTGATACAAGATAAAAAGTT+TGG + chr4_2:66148841-66148860 Msa0616330:CDS 20.0%
!!! TCTAAAATGCAATATTCATA+AGG - chr4_2:66149397-66149416 None:intergenic 20.0%
!! AGAGCTGTAAAAAATATAAT+TGG + chr4_2:66149422-66149441 Msa0616330:three_prime_UTR 20.0%
!! GAGCTGTAAAAAATATAATT+GGG + chr4_2:66149423-66149442 Msa0616330:three_prime_UTR 20.0%
!! AGCTGTAAAAAATATAATTG+GGG + chr4_2:66149424-66149443 Msa0616330:three_prime_UTR 20.0%
!!! CTGCAAGTATTTTAATATTT+TGG + chr4_2:66149679-66149698 Msa0616330:three_prime_UTR 20.0%
!! TTATGTTTGGTATTTCTTAT+TGG + chr4_2:66148418-66148437 Msa0616330:intron 20.0%
!!! ATGATAAACTGTATGAATTT+TGG + chr4_2:66148506-66148525 Msa0616330:intron 20.0%
!! TTGATACAAGATAAAAAGTT+TGG + chr4_2:66148841-66148860 Msa0616330:CDS 20.0%
!!! TCTAAAATGCAATATTCATA+AGG - chr4_2:66149397-66149416 None:intergenic 20.0%
!! AGAGCTGTAAAAAATATAAT+TGG + chr4_2:66149422-66149441 Msa0616330:three_prime_UTR 20.0%
!! GAGCTGTAAAAAATATAATT+GGG + chr4_2:66149423-66149442 Msa0616330:three_prime_UTR 20.0%
!! AGCTGTAAAAAATATAATTG+GGG + chr4_2:66149424-66149443 Msa0616330:three_prime_UTR 20.0%
!!! CTGCAAGTATTTTAATATTT+TGG + chr4_2:66149679-66149698 Msa0616330:three_prime_UTR 20.0%
! AAAGAAGATTACCATTTCAA+GGG - chr4_2:66147953-66147972 None:intergenic 25.0%
! ACAATAGAATGAATATGAAG+TGG - chr4_2:66147986-66148005 None:intergenic 25.0%
! GATAGATAAAAGTAAAACTC+TGG - chr4_2:66148098-66148117 None:intergenic 25.0%
! AATCAAAATTGGAAAGAGAA+AGG - chr4_2:66148181-66148200 None:intergenic 25.0%
!!! ATAGTACATACTTTGACTTT+TGG + chr4_2:66148344-66148363 Msa0616330:intron 25.0%
! AATATTCAGAGACACATTTA+AGG - chr4_2:66148399-66148418 None:intergenic 25.0%
! TGTCTCTGAATATTTATGTT+TGG + chr4_2:66148405-66148424 Msa0616330:intron 25.0%
!! AGATAAAAAGTTTGGTGAAA+TGG + chr4_2:66148849-66148868 Msa0616330:CDS 25.0%
!! TGCTATTGTAGATGATATTT+TGG + chr4_2:66148969-66148988 Msa0616330:CDS 25.0%
! TAATTCACAAAACTATAGAG+GGG - chr4_2:66149156-66149175 None:intergenic 25.0%
! GTAATTCACAAAACTATAGA+GGG - chr4_2:66149157-66149176 None:intergenic 25.0%
!!! CCTCTAAATACTTTTTGAAT+CGG - chr4_2:66149506-66149525 None:intergenic 25.0%
!!! ATTCAAAAAGTATTTAGAGG+TGG + chr4_2:66149506-66149525 Msa0616330:three_prime_UTR 25.0%
!!! TTCAAAAAGTATTTAGAGGT+GGG + chr4_2:66149507-66149526 Msa0616330:three_prime_UTR 25.0%
! AAAGAAGATTACCATTTCAA+GGG - chr4_2:66147953-66147972 None:intergenic 25.0%
! ACAATAGAATGAATATGAAG+TGG - chr4_2:66147986-66148005 None:intergenic 25.0%
! GATAGATAAAAGTAAAACTC+TGG - chr4_2:66148098-66148117 None:intergenic 25.0%
! AATCAAAATTGGAAAGAGAA+AGG - chr4_2:66148181-66148200 None:intergenic 25.0%
!!! ATAGTACATACTTTGACTTT+TGG + chr4_2:66148344-66148363 Msa0616330:intron 25.0%
! AATATTCAGAGACACATTTA+AGG - chr4_2:66148399-66148418 None:intergenic 25.0%
! TGTCTCTGAATATTTATGTT+TGG + chr4_2:66148405-66148424 Msa0616330:intron 25.0%
!! AGATAAAAAGTTTGGTGAAA+TGG + chr4_2:66148849-66148868 Msa0616330:CDS 25.0%
!! TGCTATTGTAGATGATATTT+TGG + chr4_2:66148969-66148988 Msa0616330:CDS 25.0%
! TAATTCACAAAACTATAGAG+GGG - chr4_2:66149156-66149175 None:intergenic 25.0%
! GTAATTCACAAAACTATAGA+GGG - chr4_2:66149157-66149176 None:intergenic 25.0%
!!! CCTCTAAATACTTTTTGAAT+CGG - chr4_2:66149506-66149525 None:intergenic 25.0%
!!! ATTCAAAAAGTATTTAGAGG+TGG + chr4_2:66149506-66149525 Msa0616330:three_prime_UTR 25.0%
!!! TTCAAAAAGTATTTAGAGGT+GGG + chr4_2:66149507-66149526 Msa0616330:three_prime_UTR 25.0%
!! ACTTTGATTTGAAGACGTAT+TGG + chr4_2:66147737-66147756 Msa0616330:CDS 30.0%
TAGCTTCATATATCTGTTGA+GGG - chr4_2:66147819-66147838 None:intergenic 30.0%
ATAGCTTCATATATCTGTTG+AGG - chr4_2:66147820-66147839 None:intergenic 30.0%
AACAGATATATGAAGCTATG+CGG + chr4_2:66147821-66147840 Msa0616330:CDS 30.0%
GAAAGAAGATTACCATTTCA+AGG - chr4_2:66147954-66147973 None:intergenic 30.0%
CAGATACAACTAGCTAAAAA+TGG - chr4_2:66148318-66148337 None:intergenic 30.0%
!!! CTTATATTTTAGTTGCAAGC+AGG + chr4_2:66148531-66148550 Msa0616330:intron 30.0%
ATCATCATGTATCAATGAAG+CGG - chr4_2:66148563-66148582 None:intergenic 30.0%
AACAATGTGTTGAAATCCAA+GGG - chr4_2:66148686-66148705 None:intergenic 30.0%
AAACAATGTGTTGAAATCCA+AGG - chr4_2:66148687-66148706 None:intergenic 30.0%
! TAAAAAGTTTGGTGAAATGG+CGG + chr4_2:66148852-66148871 Msa0616330:CDS 30.0%
ATAAAGATGGGAAAAACAGA+GGG + chr4_2:66149016-66149035 Msa0616330:CDS 30.0%
AAGAGTTATGTAGAGGTTTA+TGG + chr4_2:66149039-66149058 Msa0616330:CDS 30.0%
AGAGTTATGTAGAGGTTTAT+GGG + chr4_2:66149040-66149059 Msa0616330:CDS 30.0%
CGTAATTCACAAAACTATAG+AGG - chr4_2:66149158-66149177 None:intergenic 30.0%
! TCAACCACTTATAGTTCTTT+TGG + chr4_2:66149233-66149252 Msa0616330:three_prime_UTR 30.0%
TCATCCAAAAGAACTATAAG+TGG - chr4_2:66149240-66149259 None:intergenic 30.0%
GAAATTGTCATAATCAGAGT+GGG - chr4_2:66149343-66149362 None:intergenic 30.0%
AGAAATTGTCATAATCAGAG+TGG - chr4_2:66149344-66149363 None:intergenic 30.0%
!! CCGATTCAAAAAGTATTTAG+AGG + chr4_2:66149503-66149522 Msa0616330:three_prime_UTR 30.0%
!! TCAAAAAGTATTTAGAGGTG+GGG + chr4_2:66149508-66149527 Msa0616330:three_prime_UTR 30.0%
!! ACTTTGATTTGAAGACGTAT+TGG + chr4_2:66147737-66147756 Msa0616330:CDS 30.0%
TAGCTTCATATATCTGTTGA+GGG - chr4_2:66147819-66147838 None:intergenic 30.0%
ATAGCTTCATATATCTGTTG+AGG - chr4_2:66147820-66147839 None:intergenic 30.0%
AACAGATATATGAAGCTATG+CGG + chr4_2:66147821-66147840 Msa0616330:CDS 30.0%
GAAAGAAGATTACCATTTCA+AGG - chr4_2:66147954-66147973 None:intergenic 30.0%
CAGATACAACTAGCTAAAAA+TGG - chr4_2:66148318-66148337 None:intergenic 30.0%
!!! CTTATATTTTAGTTGCAAGC+AGG + chr4_2:66148531-66148550 Msa0616330:intron 30.0%
ATCATCATGTATCAATGAAG+CGG - chr4_2:66148563-66148582 None:intergenic 30.0%
AACAATGTGTTGAAATCCAA+GGG - chr4_2:66148686-66148705 None:intergenic 30.0%
AAACAATGTGTTGAAATCCA+AGG - chr4_2:66148687-66148706 None:intergenic 30.0%
! TAAAAAGTTTGGTGAAATGG+CGG + chr4_2:66148852-66148871 Msa0616330:CDS 30.0%
ATAAAGATGGGAAAAACAGA+GGG + chr4_2:66149016-66149035 Msa0616330:CDS 30.0%
AAGAGTTATGTAGAGGTTTA+TGG + chr4_2:66149039-66149058 Msa0616330:CDS 30.0%
AGAGTTATGTAGAGGTTTAT+GGG + chr4_2:66149040-66149059 Msa0616330:CDS 30.0%
CGTAATTCACAAAACTATAG+AGG - chr4_2:66149158-66149177 None:intergenic 30.0%
! TCAACCACTTATAGTTCTTT+TGG + chr4_2:66149233-66149252 Msa0616330:three_prime_UTR 30.0%
TCATCCAAAAGAACTATAAG+TGG - chr4_2:66149240-66149259 None:intergenic 30.0%
GAAATTGTCATAATCAGAGT+GGG - chr4_2:66149343-66149362 None:intergenic 30.0%
AGAAATTGTCATAATCAGAG+TGG - chr4_2:66149344-66149363 None:intergenic 30.0%
!! CCGATTCAAAAAGTATTTAG+AGG + chr4_2:66149503-66149522 Msa0616330:three_prime_UTR 30.0%
!! TCAAAAAGTATTTAGAGGTG+GGG + chr4_2:66149508-66149527 Msa0616330:three_prime_UTR 30.0%
ACAATGCCCTCATTAAACAT+CGG + chr4_2:66147619-66147638 Msa0616330:CDS 35.0%
AAACACCCGATGTTTAATGA+GGG - chr4_2:66147628-66147647 None:intergenic 35.0%
! CAAAGTGAACAGCTTTTGAT+CGG - chr4_2:66147723-66147742 None:intergenic 35.0%
AAGCAGAGATACACATAACA+GGG - chr4_2:66147882-66147901 None:intergenic 35.0%
! ATCTCTGCTTGTGAACTTTT+CGG + chr4_2:66147892-66147911 Msa0616330:CDS 35.0%
! GGATGAGCTTTCTTTTTCTT+TGG + chr4_2:66148151-66148170 Msa0616330:intron 35.0%
ACAATGTGTTGAAATCCAAG+GGG - chr4_2:66148685-66148704 None:intergenic 35.0%
GTATCAATCCAACTGCATTT+GGG - chr4_2:66148828-66148847 None:intergenic 35.0%
TGTATCAATCCAACTGCATT+TGG - chr4_2:66148829-66148848 None:intergenic 35.0%
TCTCTCTATCTCATCATCTT+CGG - chr4_2:66148914-66148933 None:intergenic 35.0%
GATAAAGATGGGAAAAACAG+AGG + chr4_2:66149015-66149034 Msa0616330:CDS 35.0%
GAGTTATGTAGAGGTTTATG+GGG + chr4_2:66149041-66149060 Msa0616330:CDS 35.0%
! TTGGATGGATTTGAGAAGTA+TGG + chr4_2:66149117-66149136 Msa0616330:CDS 35.0%
TAGAAGTTTCAATGTTGACG+AGG + chr4_2:66149185-66149204 Msa0616330:CDS 35.0%
GACTGTGAATCAATCTAAAG+CGG + chr4_2:66149479-66149498 Msa0616330:three_prime_UTR 35.0%
TTCTCATAAAGACTAGAGCA+CGG - chr4_2:66149562-66149581 None:intergenic 35.0%
ACAATGCCCTCATTAAACAT+CGG + chr4_2:66147619-66147638 Msa0616330:CDS 35.0%
AAACACCCGATGTTTAATGA+GGG - chr4_2:66147628-66147647 None:intergenic 35.0%
! CAAAGTGAACAGCTTTTGAT+CGG - chr4_2:66147723-66147742 None:intergenic 35.0%
AAGCAGAGATACACATAACA+GGG - chr4_2:66147882-66147901 None:intergenic 35.0%
! ATCTCTGCTTGTGAACTTTT+CGG + chr4_2:66147892-66147911 Msa0616330:CDS 35.0%
! GGATGAGCTTTCTTTTTCTT+TGG + chr4_2:66148151-66148170 Msa0616330:intron 35.0%
ACAATGTGTTGAAATCCAAG+GGG - chr4_2:66148685-66148704 None:intergenic 35.0%
GTATCAATCCAACTGCATTT+GGG - chr4_2:66148828-66148847 None:intergenic 35.0%
TGTATCAATCCAACTGCATT+TGG - chr4_2:66148829-66148848 None:intergenic 35.0%
TCTCTCTATCTCATCATCTT+CGG - chr4_2:66148914-66148933 None:intergenic 35.0%
GATAAAGATGGGAAAAACAG+AGG + chr4_2:66149015-66149034 Msa0616330:CDS 35.0%
GAGTTATGTAGAGGTTTATG+GGG + chr4_2:66149041-66149060 Msa0616330:CDS 35.0%
! TTGGATGGATTTGAGAAGTA+TGG + chr4_2:66149117-66149136 Msa0616330:CDS 35.0%
TAGAAGTTTCAATGTTGACG+AGG + chr4_2:66149185-66149204 Msa0616330:CDS 35.0%
GACTGTGAATCAATCTAAAG+CGG + chr4_2:66149479-66149498 Msa0616330:three_prime_UTR 35.0%
TTCTCATAAAGACTAGAGCA+CGG - chr4_2:66149562-66149581 None:intergenic 35.0%
GGCATTGTCGCAATTGTAAA+AGG - chr4_2:66147607-66147626 None:intergenic 40.0%
CAATGCCCTCATTAAACATC+GGG + chr4_2:66147620-66147639 Msa0616330:CDS 40.0%
GAAACACCCGATGTTTAATG+AGG - chr4_2:66147629-66147648 None:intergenic 40.0%
CGAATTGGAAGGATGAGATT+CGG - chr4_2:66147661-66147680 None:intergenic 40.0%
ACGTATTGGACTTCCCTAAT+GGG + chr4_2:66147751-66147770 Msa0616330:CDS 40.0%
CTGATTAATCTGCCCCATTA+GGG - chr4_2:66147767-66147786 None:intergenic 40.0%
TCTGATTAATCTGCCCCATT+AGG - chr4_2:66147768-66147787 None:intergenic 40.0%
TTGAGGGAACTGAACTTCAA+TGG - chr4_2:66147803-66147822 None:intergenic 40.0%
AGCAGAGATACACATAACAG+GGG - chr4_2:66147881-66147900 None:intergenic 40.0%
CAAGCAGAGATACACATAAC+AGG - chr4_2:66147883-66147902 None:intergenic 40.0%
GACAATGATAGACCAATCTC+TGG - chr4_2:66148046-66148065 None:intergenic 40.0%
AAAGAAAGCTCATCCTCTCA+CGG - chr4_2:66148146-66148165 None:intergenic 40.0%
ATGATGAGATAGAGAGACTG+AGG + chr4_2:66148917-66148936 Msa0616330:CDS 40.0%
AAACCTGAGGGAGATAAAGA+TGG + chr4_2:66149003-66149022 Msa0616330:CDS 40.0%
AACCTGAGGGAGATAAAGAT+GGG + chr4_2:66149004-66149023 Msa0616330:CDS 40.0%
AGAACTTAGAGCAAAGGCTT+TGG + chr4_2:66149089-66149108 Msa0616330:CDS 40.0%
TTCAAGAACCCATCATCTAC+TGG - chr4_2:66149211-66149230 None:intergenic 40.0%
! TTTTGGATGAGCAGTGAGTT+TGG + chr4_2:66149250-66149269 Msa0616330:three_prime_UTR 40.0%
TGGGGTTAACTAAGAGAGTA+AGG + chr4_2:66149442-66149461 Msa0616330:three_prime_UTR 40.0%
TCTCATAAAGACTAGAGCAC+GGG - chr4_2:66149561-66149580 None:intergenic 40.0%
GGCATTGTCGCAATTGTAAA+AGG - chr4_2:66147607-66147626 None:intergenic 40.0%
CAATGCCCTCATTAAACATC+GGG + chr4_2:66147620-66147639 Msa0616330:CDS 40.0%
GAAACACCCGATGTTTAATG+AGG - chr4_2:66147629-66147648 None:intergenic 40.0%
CGAATTGGAAGGATGAGATT+CGG - chr4_2:66147661-66147680 None:intergenic 40.0%
ACGTATTGGACTTCCCTAAT+GGG + chr4_2:66147751-66147770 Msa0616330:CDS 40.0%
CTGATTAATCTGCCCCATTA+GGG - chr4_2:66147767-66147786 None:intergenic 40.0%
TCTGATTAATCTGCCCCATT+AGG - chr4_2:66147768-66147787 None:intergenic 40.0%
TTGAGGGAACTGAACTTCAA+TGG - chr4_2:66147803-66147822 None:intergenic 40.0%
AGCAGAGATACACATAACAG+GGG - chr4_2:66147881-66147900 None:intergenic 40.0%
CAAGCAGAGATACACATAAC+AGG - chr4_2:66147883-66147902 None:intergenic 40.0%
GACAATGATAGACCAATCTC+TGG - chr4_2:66148046-66148065 None:intergenic 40.0%
AAAGAAAGCTCATCCTCTCA+CGG - chr4_2:66148146-66148165 None:intergenic 40.0%
ATGATGAGATAGAGAGACTG+AGG + chr4_2:66148917-66148936 Msa0616330:CDS 40.0%
AAACCTGAGGGAGATAAAGA+TGG + chr4_2:66149003-66149022 Msa0616330:CDS 40.0%
AACCTGAGGGAGATAAAGAT+GGG + chr4_2:66149004-66149023 Msa0616330:CDS 40.0%
AGAACTTAGAGCAAAGGCTT+TGG + chr4_2:66149089-66149108 Msa0616330:CDS 40.0%
TTCAAGAACCCATCATCTAC+TGG - chr4_2:66149211-66149230 None:intergenic 40.0%
! TTTTGGATGAGCAGTGAGTT+TGG + chr4_2:66149250-66149269 Msa0616330:three_prime_UTR 40.0%
TGGGGTTAACTAAGAGAGTA+AGG + chr4_2:66149442-66149461 Msa0616330:three_prime_UTR 40.0%
TCTCATAAAGACTAGAGCAC+GGG - chr4_2:66149561-66149580 None:intergenic 40.0%
GGATGAGATTCGGAGACTTT+CGG - chr4_2:66147651-66147670 None:intergenic 45.0%
ATGGAAACCGAAGAAGGAGA+AGG - chr4_2:66147700-66147719 None:intergenic 45.0%
! GTGAACAGCTTTTGATCGGA+TGG - chr4_2:66147719-66147738 None:intergenic 45.0%
GACGTATTGGACTTCCCTAA+TGG + chr4_2:66147750-66147769 Msa0616330:CDS 45.0%
CGTATTGGACTTCCCTAATG+GGG + chr4_2:66147752-66147771 Msa0616330:CDS 45.0%
TCGCTTAGCACCTTTAGCAA+GGG - chr4_2:66147854-66147873 None:intergenic 45.0%
ATCGCTTAGCACCTTTAGCA+AGG - chr4_2:66147855-66147874 None:intergenic 45.0%
AGAGATACACATAACAGGGG+GGG - chr4_2:66147878-66147897 None:intergenic 45.0%
CAGAGATACACATAACAGGG+GGG - chr4_2:66147879-66147898 None:intergenic 45.0%
GCAGAGATACACATAACAGG+GGG - chr4_2:66147880-66147899 None:intergenic 45.0%
! TCTGCTTGTGAACTTTTCGG+AGG + chr4_2:66147895-66147914 Msa0616330:CDS 45.0%
! ATTTCAAGGGCACATGCAGT+GGG - chr4_2:66147940-66147959 None:intergenic 45.0%
ACATGATGATCTTCCCTGCA+TGG + chr4_2:66148573-66148592 Msa0616330:CDS 45.0%
TGTTGACATGGCAATTCTGG+CGG + chr4_2:66148645-66148664 Msa0616330:CDS 45.0%
AGCAATGACACGAAGTACAC+GGG - chr4_2:66148740-66148759 None:intergenic 45.0%
CAGCAATGACACGAAGTACA+CGG - chr4_2:66148741-66148760 None:intergenic 45.0%
TATCTCATCATCTTCGGCAC+CGG - chr4_2:66148908-66148927 None:intergenic 45.0%
ATGAGATAGAGAGACTGAGG+AGG + chr4_2:66148920-66148939 Msa0616330:CDS 45.0%
ATAGAGAGACTGAGGAGGTA+TGG + chr4_2:66148925-66148944 Msa0616330:CDS 45.0%
GAAGAGAGACTGAAACCTGA+GGG + chr4_2:66148991-66149010 Msa0616330:CDS 45.0%
TTCCCATCTTTATCTCCCTC+AGG - chr4_2:66149009-66149028 None:intergenic 45.0%
CAGAGGGAAGAGTTATGTAG+AGG + chr4_2:66149032-66149051 Msa0616330:CDS 45.0%
GGCTGAAGAACTTAGAGCAA+AGG + chr4_2:66149083-66149102 Msa0616330:CDS 45.0%
! ACTTAGAGCAAAGGCTTTGG+AGG + chr4_2:66149092-66149111 Msa0616330:CDS 45.0%
!! AGCAAAGGCTTTGGAGGAAT+TGG + chr4_2:66149098-66149117 Msa0616330:CDS 45.0%
!! AAGGCTTTGGAGGAATTGGA+TGG + chr4_2:66149102-66149121 Msa0616330:CDS 45.0%
CAGTGAGTTTGGCGAAATCA+TGG + chr4_2:66149261-66149280 Msa0616330:three_prime_UTR 45.0%
TGAGTTTGGCGAAATCATGG+TGG + chr4_2:66149264-66149283 Msa0616330:three_prime_UTR 45.0%
ATAATCAGAGTGGGACACTG+CGG - chr4_2:66149334-66149353 None:intergenic 45.0%
ATTTAGAGGTGGGGCAGTAA+TGG + chr4_2:66149517-66149536 Msa0616330:three_prime_UTR 45.0%
!! GGCAGTAATGGATACCAAAG+AGG + chr4_2:66149529-66149548 Msa0616330:three_prime_UTR 45.0%
GGATGAGATTCGGAGACTTT+CGG - chr4_2:66147651-66147670 None:intergenic 45.0%
ATGGAAACCGAAGAAGGAGA+AGG - chr4_2:66147700-66147719 None:intergenic 45.0%
! GTGAACAGCTTTTGATCGGA+TGG - chr4_2:66147719-66147738 None:intergenic 45.0%
GACGTATTGGACTTCCCTAA+TGG + chr4_2:66147750-66147769 Msa0616330:CDS 45.0%
CGTATTGGACTTCCCTAATG+GGG + chr4_2:66147752-66147771 Msa0616330:CDS 45.0%
TCGCTTAGCACCTTTAGCAA+GGG - chr4_2:66147854-66147873 None:intergenic 45.0%
ATCGCTTAGCACCTTTAGCA+AGG - chr4_2:66147855-66147874 None:intergenic 45.0%
AGAGATACACATAACAGGGG+GGG - chr4_2:66147878-66147897 None:intergenic 45.0%
CAGAGATACACATAACAGGG+GGG - chr4_2:66147879-66147898 None:intergenic 45.0%
GCAGAGATACACATAACAGG+GGG - chr4_2:66147880-66147899 None:intergenic 45.0%
! TCTGCTTGTGAACTTTTCGG+AGG + chr4_2:66147895-66147914 Msa0616330:CDS 45.0%
! ATTTCAAGGGCACATGCAGT+GGG - chr4_2:66147940-66147959 None:intergenic 45.0%
ACATGATGATCTTCCCTGCA+TGG + chr4_2:66148573-66148592 Msa0616330:CDS 45.0%
TGTTGACATGGCAATTCTGG+CGG + chr4_2:66148645-66148664 Msa0616330:CDS 45.0%
AGCAATGACACGAAGTACAC+GGG - chr4_2:66148740-66148759 None:intergenic 45.0%
CAGCAATGACACGAAGTACA+CGG - chr4_2:66148741-66148760 None:intergenic 45.0%
TATCTCATCATCTTCGGCAC+CGG - chr4_2:66148908-66148927 None:intergenic 45.0%
ATGAGATAGAGAGACTGAGG+AGG + chr4_2:66148920-66148939 Msa0616330:CDS 45.0%
ATAGAGAGACTGAGGAGGTA+TGG + chr4_2:66148925-66148944 Msa0616330:CDS 45.0%
GAAGAGAGACTGAAACCTGA+GGG + chr4_2:66148991-66149010 Msa0616330:CDS 45.0%
TTCCCATCTTTATCTCCCTC+AGG - chr4_2:66149009-66149028 None:intergenic 45.0%
CAGAGGGAAGAGTTATGTAG+AGG + chr4_2:66149032-66149051 Msa0616330:CDS 45.0%
GGCTGAAGAACTTAGAGCAA+AGG + chr4_2:66149083-66149102 Msa0616330:CDS 45.0%
! ACTTAGAGCAAAGGCTTTGG+AGG + chr4_2:66149092-66149111 Msa0616330:CDS 45.0%
!! AGCAAAGGCTTTGGAGGAAT+TGG + chr4_2:66149098-66149117 Msa0616330:CDS 45.0%
!! AAGGCTTTGGAGGAATTGGA+TGG + chr4_2:66149102-66149121 Msa0616330:CDS 45.0%
CAGTGAGTTTGGCGAAATCA+TGG + chr4_2:66149261-66149280 Msa0616330:three_prime_UTR 45.0%
TGAGTTTGGCGAAATCATGG+TGG + chr4_2:66149264-66149283 Msa0616330:three_prime_UTR 45.0%
ATAATCAGAGTGGGACACTG+CGG - chr4_2:66149334-66149353 None:intergenic 45.0%
ATTTAGAGGTGGGGCAGTAA+TGG + chr4_2:66149517-66149536 Msa0616330:three_prime_UTR 45.0%
!! GGCAGTAATGGATACCAAAG+AGG + chr4_2:66149529-66149548 Msa0616330:three_prime_UTR 45.0%
!!! TTATTTTAATAAATCAAAAT+TGG - chr4_2:66148192-66148211 None:intergenic 5.0%
!!! TTATTTTAATAAATCAAAAT+TGG - chr4_2:66148192-66148211 None:intergenic 5.0%
GATCGGATGGAAACCGAAGA+AGG - chr4_2:66147706-66147725 None:intergenic 50.0%
CGGTATTCTGCCCTTGCTAA+AGG + chr4_2:66147841-66147860 Msa0616330:CDS 50.0%
! TTTCAAGGGCACATGCAGTG+GGG - chr4_2:66147939-66147958 None:intergenic 50.0%
! CATTTCAAGGGCACATGCAG+TGG - chr4_2:66147941-66147960 None:intergenic 50.0%
CACTGCATGTGCCCTTGAAA+TGG + chr4_2:66147939-66147958 Msa0616330:CDS 50.0%
GCTAAGAACTCGCCAGAGAT+TGG + chr4_2:66148031-66148050 Msa0616330:intron 50.0%
TCACGGTAGGCAGTTAGGAA+CGG - chr4_2:66148129-66148148 None:intergenic 50.0%
AAAGCTCATCCTCTCACGGT+AGG - chr4_2:66148142-66148161 None:intergenic 50.0%
GACAAGGAGTCATCCATGCA+GGG - chr4_2:66148589-66148608 None:intergenic 50.0%
TGACAAGGAGTCATCCATGC+AGG - chr4_2:66148590-66148609 None:intergenic 50.0%
TGCCATGTCAACACCGTAGA+TGG - chr4_2:66148638-66148657 None:intergenic 50.0%
!! CGGTGTTGACATGGCAATTC+TGG + chr4_2:66148642-66148661 Msa0616330:CDS 50.0%
GTTGACATGGCAATTCTGGC+GGG + chr4_2:66148646-66148665 Msa0616330:CDS 50.0%
GGTTCAGGTACAAGGTCAGA+GGG - chr4_2:66148718-66148737 None:intergenic 50.0%
GCAATGACACGAAGTACACG+GGG - chr4_2:66148739-66148758 None:intergenic 50.0%
GGCAGTTCTTGGACCTTGAA+GGG + chr4_2:66148800-66148819 Msa0616330:CDS 50.0%
GCAGTTCTTGGACCTTGAAG+GGG + chr4_2:66148801-66148820 Msa0616330:CDS 50.0%
CAGTTCTTGGACCTTGAAGG+GGG + chr4_2:66148802-66148821 Msa0616330:CDS 50.0%
AGTGTTCTGCAGTGTGTGGA+GGG + chr4_2:66148875-66148894 Msa0616330:CDS 50.0%
! AGGAGGTATGGTAGAGCTGT+TGG + chr4_2:66148937-66148956 Msa0616330:CDS 50.0%
GGAAGAGAGACTGAAACCTG+AGG + chr4_2:66148990-66149009 Msa0616330:CDS 50.0%
TGGGGTTGAAAAAGCAGCAG+AGG + chr4_2:66149059-66149078 Msa0616330:CDS 50.0%
GGTTGAAAAAGCAGCAGAGG+TGG + chr4_2:66149062-66149081 Msa0616330:CDS 50.0%
TTGACGAGGCCAGTAGATGA+TGG + chr4_2:66149199-66149218 Msa0616330:CDS 50.0%
TGACGAGGCCAGTAGATGAT+GGG + chr4_2:66149200-66149219 Msa0616330:exon 50.0%
GATCGGATGGAAACCGAAGA+AGG - chr4_2:66147706-66147725 None:intergenic 50.0%
CGGTATTCTGCCCTTGCTAA+AGG + chr4_2:66147841-66147860 Msa0616330:CDS 50.0%
! TTTCAAGGGCACATGCAGTG+GGG - chr4_2:66147939-66147958 None:intergenic 50.0%
! CATTTCAAGGGCACATGCAG+TGG - chr4_2:66147941-66147960 None:intergenic 50.0%
CACTGCATGTGCCCTTGAAA+TGG + chr4_2:66147939-66147958 Msa0616330:CDS 50.0%
GCTAAGAACTCGCCAGAGAT+TGG + chr4_2:66148031-66148050 Msa0616330:intron 50.0%
TCACGGTAGGCAGTTAGGAA+CGG - chr4_2:66148129-66148148 None:intergenic 50.0%
AAAGCTCATCCTCTCACGGT+AGG - chr4_2:66148142-66148161 None:intergenic 50.0%
GACAAGGAGTCATCCATGCA+GGG - chr4_2:66148589-66148608 None:intergenic 50.0%
TGACAAGGAGTCATCCATGC+AGG - chr4_2:66148590-66148609 None:intergenic 50.0%
TGCCATGTCAACACCGTAGA+TGG - chr4_2:66148638-66148657 None:intergenic 50.0%
!! CGGTGTTGACATGGCAATTC+TGG + chr4_2:66148642-66148661 Msa0616330:CDS 50.0%
GTTGACATGGCAATTCTGGC+GGG + chr4_2:66148646-66148665 Msa0616330:CDS 50.0%
GGTTCAGGTACAAGGTCAGA+GGG - chr4_2:66148718-66148737 None:intergenic 50.0%
GCAATGACACGAAGTACACG+GGG - chr4_2:66148739-66148758 None:intergenic 50.0%
GGCAGTTCTTGGACCTTGAA+GGG + chr4_2:66148800-66148819 Msa0616330:CDS 50.0%
GCAGTTCTTGGACCTTGAAG+GGG + chr4_2:66148801-66148820 Msa0616330:CDS 50.0%
CAGTTCTTGGACCTTGAAGG+GGG + chr4_2:66148802-66148821 Msa0616330:CDS 50.0%
AGTGTTCTGCAGTGTGTGGA+GGG + chr4_2:66148875-66148894 Msa0616330:CDS 50.0%
! AGGAGGTATGGTAGAGCTGT+TGG + chr4_2:66148937-66148956 Msa0616330:CDS 50.0%
GGAAGAGAGACTGAAACCTG+AGG + chr4_2:66148990-66149009 Msa0616330:CDS 50.0%
TGGGGTTGAAAAAGCAGCAG+AGG + chr4_2:66149059-66149078 Msa0616330:CDS 50.0%
GGTTGAAAAAGCAGCAGAGG+TGG + chr4_2:66149062-66149081 Msa0616330:CDS 50.0%
TTGACGAGGCCAGTAGATGA+TGG + chr4_2:66149199-66149218 Msa0616330:CDS 50.0%
TGACGAGGCCAGTAGATGAT+GGG + chr4_2:66149200-66149219 Msa0616330:exon 50.0%
CCATGGAGCAGCGAATTGGA+AGG - chr4_2:66147672-66147691 None:intergenic 55.0%
CCTTCCAATTCGCTGCTCCA+TGG + chr4_2:66147669-66147688 Msa0616330:CDS 55.0%
AGAAGGAGAAGGAGCAGCCA+TGG - chr4_2:66147689-66147708 None:intergenic 55.0%
GGCTGCTCCTTCTCCTTCTT+CGG + chr4_2:66147690-66147709 Msa0616330:CDS 55.0%
TCCTAACTGCCTACCGTGAG+AGG + chr4_2:66148130-66148149 Msa0616330:intron 55.0%
TCCTCTCACGGTAGGCAGTT+AGG - chr4_2:66148134-66148153 None:intergenic 55.0%
CCGTAGATGGCGTGGTTTGA+GGG - chr4_2:66148625-66148644 None:intergenic 55.0%
CCCTCAAACCACGCCATCTA+CGG + chr4_2:66148622-66148641 Msa0616330:CDS 55.0%
ACCGTAGATGGCGTGGTTTG+AGG - chr4_2:66148626-66148645 None:intergenic 55.0%
TGTCAACACCGTAGATGGCG+TGG - chr4_2:66148633-66148652 None:intergenic 55.0%
!! CGCCATCTACGGTGTTGACA+TGG + chr4_2:66148633-66148652 Msa0616330:CDS 55.0%
GGTGATGCACTCTTTCCCCT+TGG + chr4_2:66148667-66148686 Msa0616330:CDS 55.0%
GGGTTCAGGTACAAGGTCAG+AGG - chr4_2:66148719-66148738 None:intergenic 55.0%
GTACACGGGGTTCAGGTACA+AGG - chr4_2:66148726-66148745 None:intergenic 55.0%
ACACGAAGTACACGGGGTTC+AGG - chr4_2:66148733-66148752 None:intergenic 55.0%
AATGGCTGCAGGGCAGTTCT+TGG + chr4_2:66148789-66148808 Msa0616330:CDS 55.0%
GGGCAGTTCTTGGACCTTGA+AGG + chr4_2:66148799-66148818 Msa0616330:CDS 55.0%
GAGTGTTCTGCAGTGTGTGG+AGG + chr4_2:66148874-66148893 Msa0616330:CDS 55.0%
TGCAGTGTGTGGAGGGTTGT+TGG + chr4_2:66148882-66148901 Msa0616330:CDS 55.0%
!! AGCACGGGACTAGTCCTCTT+TGG - chr4_2:66149546-66149565 None:intergenic 55.0%
CCATGGAGCAGCGAATTGGA+AGG - chr4_2:66147672-66147691 None:intergenic 55.0%
CCTTCCAATTCGCTGCTCCA+TGG + chr4_2:66147669-66147688 Msa0616330:CDS 55.0%
AGAAGGAGAAGGAGCAGCCA+TGG - chr4_2:66147689-66147708 None:intergenic 55.0%
GGCTGCTCCTTCTCCTTCTT+CGG + chr4_2:66147690-66147709 Msa0616330:CDS 55.0%
TCCTAACTGCCTACCGTGAG+AGG + chr4_2:66148130-66148149 Msa0616330:intron 55.0%
TCCTCTCACGGTAGGCAGTT+AGG - chr4_2:66148134-66148153 None:intergenic 55.0%
CCGTAGATGGCGTGGTTTGA+GGG - chr4_2:66148625-66148644 None:intergenic 55.0%
CCCTCAAACCACGCCATCTA+CGG + chr4_2:66148622-66148641 Msa0616330:CDS 55.0%
ACCGTAGATGGCGTGGTTTG+AGG - chr4_2:66148626-66148645 None:intergenic 55.0%
TGTCAACACCGTAGATGGCG+TGG - chr4_2:66148633-66148652 None:intergenic 55.0%
!! CGCCATCTACGGTGTTGACA+TGG + chr4_2:66148633-66148652 Msa0616330:CDS 55.0%
GGTGATGCACTCTTTCCCCT+TGG + chr4_2:66148667-66148686 Msa0616330:CDS 55.0%
GGGTTCAGGTACAAGGTCAG+AGG - chr4_2:66148719-66148738 None:intergenic 55.0%
GTACACGGGGTTCAGGTACA+AGG - chr4_2:66148726-66148745 None:intergenic 55.0%
ACACGAAGTACACGGGGTTC+AGG - chr4_2:66148733-66148752 None:intergenic 55.0%
AATGGCTGCAGGGCAGTTCT+TGG + chr4_2:66148789-66148808 Msa0616330:CDS 55.0%
GGGCAGTTCTTGGACCTTGA+AGG + chr4_2:66148799-66148818 Msa0616330:CDS 55.0%
GAGTGTTCTGCAGTGTGTGG+AGG + chr4_2:66148874-66148893 Msa0616330:CDS 55.0%
TGCAGTGTGTGGAGGGTTGT+TGG + chr4_2:66148882-66148901 Msa0616330:CDS 55.0%
!! AGCACGGGACTAGTCCTCTT+TGG - chr4_2:66149546-66149565 None:intergenic 55.0%
GCAGCCATGGAGCAGCGAAT+TGG - chr4_2:66147676-66147695 None:intergenic 60.0%
ATGCAGTGGGGAAGGCAGCA+AGG - chr4_2:66147927-66147946 None:intergenic 60.0%
! AAGGGCACATGCAGTGGGGA+AGG - chr4_2:66147935-66147954 None:intergenic 60.0%
GATGACTCCTTGTCACGCCG+TGG + chr4_2:66148595-66148614 Msa0616330:CDS 60.0%
AGATGGCGTGGTTTGAGGGC+TGG - chr4_2:66148621-66148640 None:intergenic 60.0%
TGCTGAGATAGCCCGCTGTG+TGG + chr4_2:66148756-66148775 Msa0616330:CDS 60.0%
GCTGAGATAGCCCGCTGTGT+GGG + chr4_2:66148757-66148776 Msa0616330:CDS 60.0%
TTCCAGTGGAGCCCACACAG+CGG - chr4_2:66148771-66148790 None:intergenic 60.0%
CTGTGTGGGCTCCACTGGAA+TGG + chr4_2:66148771-66148790 Msa0616330:CDS 60.0%
GCTCCACTGGAATGGCTGCA+GGG + chr4_2:66148779-66148798 Msa0616330:CDS 60.0%
CTGCATTTGGGCCCCCTTCA+AGG - chr4_2:66148816-66148835 None:intergenic 60.0%
GAAGGGGGCCCAAATGCAGT+TGG + chr4_2:66148817-66148836 Msa0616330:CDS 60.0%
! GCGGAGTGTTCTGCAGTGTG+TGG + chr4_2:66148871-66148890 Msa0616330:CDS 60.0%
GTGTGTGGAGGGTTGTTGGC+CGG + chr4_2:66148886-66148905 Msa0616330:CDS 60.0%
GCAGCCATGGAGCAGCGAAT+TGG - chr4_2:66147676-66147695 None:intergenic 60.0%
ATGCAGTGGGGAAGGCAGCA+AGG - chr4_2:66147927-66147946 None:intergenic 60.0%
! AAGGGCACATGCAGTGGGGA+AGG - chr4_2:66147935-66147954 None:intergenic 60.0%
GATGACTCCTTGTCACGCCG+TGG + chr4_2:66148595-66148614 Msa0616330:CDS 60.0%
AGATGGCGTGGTTTGAGGGC+TGG - chr4_2:66148621-66148640 None:intergenic 60.0%
TGCTGAGATAGCCCGCTGTG+TGG + chr4_2:66148756-66148775 Msa0616330:CDS 60.0%
GCTGAGATAGCCCGCTGTGT+GGG + chr4_2:66148757-66148776 Msa0616330:CDS 60.0%
TTCCAGTGGAGCCCACACAG+CGG - chr4_2:66148771-66148790 None:intergenic 60.0%
CTGTGTGGGCTCCACTGGAA+TGG + chr4_2:66148771-66148790 Msa0616330:CDS 60.0%
GCTCCACTGGAATGGCTGCA+GGG + chr4_2:66148779-66148798 Msa0616330:CDS 60.0%
CTGCATTTGGGCCCCCTTCA+AGG - chr4_2:66148816-66148835 None:intergenic 60.0%
GAAGGGGGCCCAAATGCAGT+TGG + chr4_2:66148817-66148836 Msa0616330:CDS 60.0%
! GCGGAGTGTTCTGCAGTGTG+TGG + chr4_2:66148871-66148890 Msa0616330:CDS 60.0%
GTGTGTGGAGGGTTGTTGGC+CGG + chr4_2:66148886-66148905 Msa0616330:CDS 60.0%
!! CGTGGTTTGAGGGCTGGCCA+CGG - chr4_2:66148615-66148634 None:intergenic 65.0%
TCCAGTGGAGCCCACACAGC+GGG - chr4_2:66148770-66148789 None:intergenic 65.0%
GGCTCCACTGGAATGGCTGC+AGG + chr4_2:66148778-66148797 Msa0616330:CDS 65.0%
CTGCCCTGCAGCCATTCCAG+TGG - chr4_2:66148785-66148804 None:intergenic 65.0%
!! CGTGGTTTGAGGGCTGGCCA+CGG - chr4_2:66148615-66148634 None:intergenic 65.0%
TCCAGTGGAGCCCACACAGC+GGG - chr4_2:66148770-66148789 None:intergenic 65.0%
GGCTCCACTGGAATGGCTGC+AGG + chr4_2:66148778-66148797 Msa0616330:CDS 65.0%
CTGCCCTGCAGCCATTCCAG+TGG - chr4_2:66148785-66148804 None:intergenic 65.0%
!! GGGCTGGCCACGGCGTGACA+AGG - chr4_2:66148605-66148624 None:intergenic 75.0%
GCCCGCTGTGTGGGCTCCAC+TGG + chr4_2:66148766-66148785 Msa0616330:CDS 75.0%
!! GGGCTGGCCACGGCGTGACA+AGG - chr4_2:66148605-66148624 None:intergenic 75.0%
GCCCGCTGTGTGGGCTCCAC+TGG + chr4_2:66148766-66148785 Msa0616330:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 66147581 66149715 66147581 ID=Msa0616330;Name=Msa0616330
chr4_2 mRNA 66147581 66149715 66147581 ID=Msa0616330-mRNA-1;Parent=Msa0616330;Name=Msa0616330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=17|1|1|1|1|1|2|497|342
chr4_2 exon 66147581 66147960 66147581 ID=Msa0616330-mRNA-1:exon:18791;Parent=Msa0616330-mRNA-1
chr4_2 exon 66148553 66149715 66148553 ID=Msa0616330-mRNA-1:exon:18792;Parent=Msa0616330-mRNA-1
chr4_2 five_prime_UTR 66147581 66147597 66147581 ID=Msa0616330-mRNA-1:five_prime_utr;Parent=Msa0616330-mRNA-1
chr4_2 CDS 66147598 66147960 66147598 ID=Msa0616330-mRNA-1:cds;Parent=Msa0616330-mRNA-1
chr4_2 CDS 66148553 66149218 66148553 ID=Msa0616330-mRNA-1:cds;Parent=Msa0616330-mRNA-1
chr4_2 three_prime_UTR 66149219 66149715 66149219 ID=Msa0616330-mRNA-1:three_prime_utr;Parent=Msa0616330-mRNA-1
Gene Sequence

>Msa0616330

ATGGCTCCTTTTACAATTGCGACAATGCCCTCATTAAACATCGGGTGTTTCCGAAAGTCTCCGAATCTCATCCTTCCAATTCGCTGCTCCATGGCTGCTCCTTCTCCTTCTTCGGTTTCCATCCGATCAAAAGCTGTTCACTTTGATTTGAAGACGTATTGGACTTCCCTAATGGGGCAGATTAATCAGAAGCTCGATGAAGCCATTGAAGTTCAGTTCCCTCAACAGATATATGAAGCTATGCGGTATTCTGCCCTTGCTAAAGGTGCTAAGCGATCCCCCCCTGTTATGTGTATCTCTGCTTGTGAACTTTTCGGAGGCAGTCGCCTTGCTGCCTTCCCCACTGCATGTGCCCTTGAAATGGTTCATGCCGCTTCATTGATACATGATGATCTTCCCTGCATGGATGACTCCTTGTCACGCCGTGGCCAGCCCTCAAACCACGCCATCTACGGTGTTGACATGGCAATTCTGGCGGGTGATGCACTCTTTCCCCTTGGATTTCAACACATTGTTTCACATACTCCCTCTGACCTTGTACCTGAACCCCGTGTACTTCGTGTCATTGCTGAGATAGCCCGCTGTGTGGGCTCCACTGGAATGGCTGCAGGGCAGTTCTTGGACCTTGAAGGGGGCCCAAATGCAGTTGGATTGATACAAGATAAAAAGTTTGGTGAAATGGCGGAGTGTTCTGCAGTGTGTGGAGGGTTGTTGGCCGGTGCCGAAGATGATGAGATAGAGAGACTGAGGAGGTATGGTAGAGCTGTTGGAGTATTGTATGCTATTGTAGATGATATTTTGGAAGAGAGACTGAAACCTGAGGGAGATAAAGATGGGAAAAACAGAGGGAAGAGTTATGTAGAGGTTTATGGGGTTGAAAAAGCAGCAGAGGTGGCTGAAGAACTTAGAGCAAAGGCTTTGGAGGAATTGGATGGATTTGAGAAGTATGGAGATCAAGTGTTGCCCCTCTATAGTTTTGTGAATTACGCTATTGATAGAAGTTTCAATGTTGACGAGGCCAGTAGATGA
Protein sequence

>Msa0616330

MAPFTIATMPSLNIGCFRKSPNLILPIRCSMAAPSPSSVSIRSKAVHFDLKTYWTSLMGQINQKLDEAIEVQFPQQIYEAMRYSALAKGAKRSPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSLSRRGQPSNHAIYGVDMAILAGDALFPLGFQHIVSHTPSDLVPEPRVLRVIAEIARCVGSTGMAAGQFLDLEGGPNAVGLIQDKKFGEMAECSAVCGGLLAGAEDDEIERLRRYGRAVGVLYAIVDDILEERLKPEGDKDGKNRGKSYVEVYGVEKAAEVAEELRAKALEELDGFEKYGDQVLPLYSFVNYAIDRSFNVDEASR*