AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524470 MtrunA17_Chr3g0145711 98.514 471 4 1 22 492 1 468 0.0 947
Msa0524470 MtrunA17_Chr7g0233361 34.448 299 169 10 100 385 87 371 7.60e-34 133
Msa0524470 MtrunA17_Chr8g0376561 30.537 298 182 8 100 384 52 337 2.41e-31 126
Msa0524470 MtrunA17_Chr7g0244421 27.946 297 197 8 100 384 83 374 5.91e-21 95.5
Msa0524470 MtrunA17_Chr8g0382871 27.000 300 190 10 99 380 82 370 3.31e-17 84.0
Msa0524470 MtrunA17_Chr3g0106581 25.524 286 182 8 61 333 51 318 9.97e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524470 AT3G48730.1 79.958 474 86 4 22 492 5 472 0.0 778
Msa0524470 AT5G63570.1 79.560 455 88 2 38 492 25 474 0.0 756
Msa0524470 AT5G63570.2 82.725 411 71 0 82 492 1 411 0.0 719
Msa0524470 AT5G46180.1 28.882 322 204 8 100 408 59 368 4.36e-30 122
Msa0524470 AT1G80600.1 29.773 309 170 10 100 385 77 361 5.89e-26 110
Msa0524470 AT3G08860.2 26.667 315 206 11 100 398 83 388 4.74e-20 93.2
Msa0524470 AT3G08860.1 26.667 315 206 11 100 398 83 388 5.12e-20 93.2
Msa0524470 AT4G39660.1 25.519 337 216 11 99 415 77 398 1.93e-19 91.3
Msa0524470 AT4G39660.2 25.538 325 207 11 111 415 14 323 2.88e-19 90.1
Msa0524470 AT2G38400.1 25.444 338 214 10 99 415 79 399 2.05e-16 82.0
Msa0524470 AT2G38400.2 25.444 338 214 10 99 415 79 399 2.17e-16 82.0
Msa0524470 AT3G22200.2 22.969 357 211 12 93 402 72 411 6.82e-14 74.3
Msa0524470 AT3G22200.1 22.969 357 211 12 93 402 63 402 7.83e-14 74.3

Find 158 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTTGCTAAGTTCTTC+TGG 0.125787 3_4:+77948996 Msa0524470:CDS
TCTTGGGGTCCTGCAATTAT+TGG 0.214742 3_4:+77947959 Msa0524470:CDS
ATTAGATCTATGTATTATTA+TGG 0.232859 3_4:+77949215 Msa0524470:three_prime_UTR
TTGACGGAATCAATGATAAT+TGG 0.243448 3_4:-77947884 None:intergenic
CCGAACTCGTTCTTTGACTA+TGG 0.262819 3_4:+77947637 Msa0524470:CDS
TGGAGGTAGGAGAGATATTA+TGG 0.268158 3_4:+77948697 Msa0524470:CDS
CATTGACTATGTTGGTTCTT+GGG 0.275476 3_4:+77947943 Msa0524470:CDS
GTTTCATTGGTGGCAGCTTT+AGG 0.281598 3_4:-77948374 None:intergenic
CTGCTGCTGAGAAGGTCTTT+AGG 0.282740 3_4:+77949116 Msa0524470:CDS
TGCTGCTGAGAAGGTCTTTA+GGG 0.286640 3_4:+77949117 Msa0524470:CDS
CTTGATGATCTTCTCTTTGC+CGG 0.295779 3_4:-77948258 None:intergenic
CGCAAGGAACTAAGAAAATC+AGG 0.299535 3_4:-77948518 None:intergenic
ATATGTGGTGGGCATATAAA+TGG 0.309935 3_4:+77948905 Msa0524470:CDS
TTCCCCAGAGTTGTTATATC+AGG 0.310573 3_4:-77948641 None:intergenic
ACATTGACTATGTTGGTTCT+TGG 0.314847 3_4:+77947942 Msa0524470:CDS
ATGGCTGCTTCGGGTATTGC+AGG 0.331193 3_4:+77947563 Msa0524470:CDS
CAAGTTTGCTAAGTTCTTCT+GGG 0.335783 3_4:+77948997 Msa0524470:CDS
AGAAACTCTGAAGCGTATTA+AGG 0.338134 3_4:+77948796 Msa0524470:CDS
GAACCTGTTGTTGGAAATTC+CGG 0.340485 3_4:+77948479 Msa0524470:CDS
GTTAGCAGAAGGTGTCTATT+TGG 0.340874 3_4:+77949024 Msa0524470:CDS
GAATACTTGGACAAAATTAC+AGG 0.342820 3_4:+77948833 Msa0524470:CDS
ATGGTCAGATTTGTCAATTC+CGG 0.345817 3_4:+77948191 Msa0524470:CDS
GGCATATAAATGGGATGTTT+GGG 0.350134 3_4:+77948915 Msa0524470:CDS
GGGCATATAAATGGGATGTT+TGG 0.352503 3_4:+77948914 Msa0524470:CDS
GCACCTTCACAGTTTGAGGC+TGG 0.354758 3_4:+77949046 Msa0524470:CDS
TCATTCTGAAATGGCTGCTT+CGG 0.355637 3_4:+77947553 Msa0524470:CDS
TCCAAGTATTCATAAGTTCC+TGG 0.359322 3_4:-77948821 None:intergenic
TTAGGAACACCAGGGGAATC+AGG 0.388149 3_4:-77948356 None:intergenic
TTTGGCACCTTCACAGTTTG+AGG 0.388856 3_4:+77949042 Msa0524470:CDS
GGCTGTAAGGGTTTCATTGG+TGG 0.391375 3_4:-77948384 None:intergenic
GAACTAAGAAAATCAGGTTT+AGG 0.397600 3_4:-77948512 None:intergenic
TACGGCTATCTCTCCTTTGT+TGG 0.403214 3_4:-77948447 None:intergenic
CATTCTGAAATGGCTGCTTC+GGG 0.408622 3_4:+77947554 Msa0524470:CDS
TATTGGTCACGCTGATGATC+AGG 0.409676 3_4:+77947976 Msa0524470:CDS
TGCTGTTCCCAGCATTGAAA+TGG 0.417543 3_4:+77948172 Msa0524470:CDS
CCAGAAGAACTTAGCAAACT+TGG 0.420091 3_4:-77948996 None:intergenic
TTTCTTGTTAAGGCAGGTAG+TGG 0.428022 3_4:+77948314 Msa0524470:CDS
ATGAAGAAAGGAACCAGCTT+TGG 0.429438 3_4:+77948104 Msa0524470:CDS
GACGTTGAGTGGGAATCCTT+TGG 0.430505 3_4:+77948757 Msa0524470:CDS
GTCTTCCTCGAACCTGTTGT+TGG 0.431603 3_4:+77948470 Msa0524470:CDS
CACCTTCACAGTTTGAGGCT+GGG 0.433643 3_4:+77949047 Msa0524470:CDS
TCTTATCTATCATTCTGAAA+TGG 0.436545 3_4:+77947544 Msa0524470:CDS
CTACCTGCCTTAACAAGAAA+AGG 0.436782 3_4:-77948311 None:intergenic
GGTTTGCCAGTAGGTGCATA+TGG 0.445263 3_4:+77948677 Msa0524470:CDS
AAACCGGAATTTCCAACAAC+AGG 0.445497 3_4:-77948482 None:intergenic
ACAACTCTGGGGAAGATCAT+TGG 0.450763 3_4:+77948650 Msa0524470:CDS
CCACATGCGAGCACCTTTGA+CGG 0.452870 3_4:-77947900 None:intergenic
ACTGGATTCCGTTTGTCGTA+TGG 0.457113 3_4:+77948590 Msa0524470:CDS
TCAGCGTGACCAATAATTGC+AGG 0.459493 3_4:-77947968 None:intergenic
ATTGACTATGTTGGTTCTTG+GGG 0.459541 3_4:+77947944 Msa0524470:CDS
TGAGGCTGGGTTCACCAGCT+TGG 0.460390 3_4:+77949060 Msa0524470:CDS
AAATCTGACCATTTCAATGC+TGG 0.463786 3_4:-77948180 None:intergenic
CGCCTTGCCCGTGCTTATAC+CGG 0.463976 3_4:+77948239 Msa0524470:CDS
AACTCCTGATATAACAACTC+TGG 0.465327 3_4:+77948637 Msa0524470:CDS
CAGGGGAATCAGGAAGTCCT+AGG 0.466845 3_4:-77948346 None:intergenic
TTTGATTAGGAATTGATGCC+TGG 0.467656 3_4:+77947815 Msa0524470:intron
ACTCCTGATATAACAACTCT+GGG 0.468947 3_4:+77948638 Msa0524470:CDS
ATTATCATTGATTCCGTCAA+AGG 0.468966 3_4:+77947887 Msa0524470:CDS
ATGGAGACCGTGGCTCCGGC+TGG 0.468994 3_4:+77948716 Msa0524470:CDS
AGAGAAGATCATCAAGTTTG+AGG 0.471292 3_4:+77948265 Msa0524470:CDS
ATTACAGGTGAGCTTGTTCA+AGG 0.477356 3_4:+77948848 Msa0524470:CDS
AAGACAAGGTGCACCAAAGC+TGG 0.477394 3_4:-77948117 None:intergenic
GAGAAGATCATCAAGTTTGA+GGG 0.481387 3_4:+77948266 Msa0524470:CDS
GACCATTGCTGCTGCTGAGA+AGG 0.485730 3_4:+77949108 Msa0524470:CDS
CTCTTTGCCGGTATAAGCAC+GGG 0.486208 3_4:-77948246 None:intergenic
TTCGGTGCTGGGCTTCTGGT+CGG 0.486793 3_4:-77947669 None:intergenic
GTTCAAGGCATTGTTGAAGC+TGG 0.489925 3_4:+77948863 Msa0524470:CDS
AACCAACATAGTCAATGTAT+TGG 0.491453 3_4:-77947937 None:intergenic
ACTGATTTGAAAGCACGAAC+AGG 0.495762 3_4:-77947851 None:intergenic
AAGAAGAGAAGCAATTGAGA+AGG 0.496897 3_4:-77947592 None:intergenic
GTGTTTGATGAAGTTATGAC+TGG 0.497336 3_4:+77948572 Msa0524470:CDS
GCCAGGAACTTATGAATACT+TGG 0.499909 3_4:+77948820 Msa0524470:CDS
AGGAAATAACATGAAGATGC+AGG 0.500720 3_4:-77949370 None:intergenic
GCTGGACCTATGTACCAGGC+TGG 0.502027 3_4:+77948734 Msa0524470:CDS
AACAGCAGCAAAGTCATTGA+AGG 0.503512 3_4:-77948408 None:intergenic
CCATAGTCAAAGAACGAGTT+CGG 0.503585 3_4:-77947637 None:intergenic
AATCCTTTGGCAATGACTGC+AGG 0.505080 3_4:+77948770 Msa0524470:CDS
AGAAGAGAAGCAATTGAGAA+GGG 0.505692 3_4:-77947591 None:intergenic
TTCCGGCACAGAAGCATGCA+TGG 0.507223 3_4:+77948208 Msa0524470:CDS
GTTCGTGCTTTCAAATCAGT+TGG 0.507920 3_4:+77947854 Msa0524470:CDS
GAGCACCTCCATACGACAAA+CGG 0.508625 3_4:-77948598 None:intergenic
GTTGAAGCTGGTAAGAAGGC+AGG 0.509704 3_4:+77948875 Msa0524470:CDS
AACCAATACATTGACTATGT+TGG 0.510475 3_4:+77947935 Msa0524470:CDS
ACAGGAGAGTTCACACCTCC+AGG 0.510938 3_4:-77947833 None:intergenic
TATTATGGAGACCGTGGCTC+CGG 0.513114 3_4:+77948712 Msa0524470:CDS
AACGTCCCAGCCTGGTACAT+AGG 0.518158 3_4:-77948740 None:intergenic
GCCTGGTACATAGGTCCAGC+CGG 0.518203 3_4:-77948731 None:intergenic
TTCTGGGGTATGTTAGCAGA+AGG 0.519712 3_4:+77949013 Msa0524470:CDS
GACCTTCTCAGCAGCAGCAA+TGG 0.522852 3_4:-77949110 None:intergenic
CTAGGACTTCCTGATTCCCC+TGG 0.524552 3_4:+77948347 Msa0524470:CDS
GGTGCTGGGCTTCTGGTCGG+TGG 0.527286 3_4:-77947666 None:intergenic
TGAAAACACTCTAGCTGAGA+TGG 0.530589 3_4:+77948142 Msa0524470:CDS
CTACCTCCATATGCACCTAC+TGG 0.530999 3_4:-77948683 None:intergenic
CGTGCTTTCAAATCAGTTGG+TGG 0.531486 3_4:+77947857 Msa0524470:CDS
CCGTCAAAGGTGCTCGCATG+TGG 0.532480 3_4:+77947900 Msa0524470:CDS
TACCAGGCTGGGACGTTGAG+TGG 0.532692 3_4:+77948746 Msa0524470:CDS
GAGAAGGGCATTGTTCTCCT+TGG 0.539822 3_4:-77948549 None:intergenic
CATTGTTGAAGCTGGTAAGA+AGG 0.540418 3_4:+77948871 Msa0524470:CDS
AGGTTTAGGAGTAATGAAAC+CGG 0.540434 3_4:-77948498 None:intergenic
GGAGGTGCTCAACAATACTT+TGG 0.540803 3_4:+77948611 Msa0524470:CDS
CTGAAGCGTATTAAGGAGCC+AGG 0.542721 3_4:+77948803 Msa0524470:CDS
CTGGACCTATGTACCAGGCT+GGG 0.542962 3_4:+77948735 Msa0524470:CDS
AATTTCCAACAACAGGTTCG+AGG 0.544211 3_4:-77948475 None:intergenic
TGCCGGTATAAGCACGGGCA+AGG 0.545023 3_4:-77948241 None:intergenic
CTTCCTGTATCTAGTCTCAT+CGG 0.545827 3_4:+77949269 Msa0524470:three_prime_UTR
ATCAGAAGTATGTGCCAAGC+TGG 0.549286 3_4:-77949074 None:intergenic
TCCGGCTGGACCTATGTACC+AGG 0.550164 3_4:+77948730 Msa0524470:CDS
AATCTGACCATTTCAATGCT+GGG 0.551104 3_4:-77948179 None:intergenic
GCTCGCATGTGGGACATTGA+TGG 0.552562 3_4:+77947911 Msa0524470:CDS
GGTAGTGGAGTTGCCACCCT+AGG 0.552592 3_4:+77948329 Msa0524470:CDS
TCCCACTCAACGTCCCAGCC+TGG 0.554590 3_4:-77948748 None:intergenic
ACCCATGCATGCTTCTGTGC+CGG 0.554652 3_4:-77948210 None:intergenic
CTTGCTGAGACAATGAAGAA+AGG 0.555611 3_4:+77948092 Msa0524470:CDS
TCTCTTTGCCGGTATAAGCA+CGG 0.568722 3_4:-77948247 None:intergenic
CATAGGTCCAGCCGGAGCCA+CGG 0.570397 3_4:-77948723 None:intergenic
GTGGCAGCTTTAGGAACACC+AGG 0.571077 3_4:-77948365 None:intergenic
ACACCGATGAGACTAGATAC+AGG 0.575451 3_4:-77949272 None:intergenic
ACAGCAGCAAAGTCATTGAA+GGG 0.578728 3_4:-77948407 None:intergenic
GCAGGGCATGCAATATGTGG+TGG 0.581592 3_4:+77948893 Msa0524470:CDS
TATGTGGTGGGCATATAAAT+GGG 0.582602 3_4:+77948906 Msa0524470:CDS
AAGTTTGCTAAGTTCTTCTG+GGG 0.584115 3_4:+77948998 Msa0524470:CDS
TAACTTCATCAAACACGAGA+AGG 0.585499 3_4:-77948565 None:intergenic
TTGAAGCTGGTAAGAAGGCA+GGG 0.585619 3_4:+77948876 Msa0524470:CDS
TGGCTGCTTCGGGTATTGCA+GGG 0.586719 3_4:+77947564 Msa0524470:CDS
AGGGGAATCAGGAAGTCCTA+GGG 0.587377 3_4:-77948345 None:intergenic
GGATTCCGTTTGTCGTATGG+AGG 0.588634 3_4:+77948593 Msa0524470:CDS
AAGTTTGAGGGATGTTATCA+CGG 0.591307 3_4:+77948278 Msa0524470:CDS
AAGGCAGGGCATGCAATATG+TGG 0.593656 3_4:+77948890 Msa0524470:CDS
CTTCATTGTCTCAGCAAGAG+CGG 0.594962 3_4:-77948087 None:intergenic
ATGCCTGCAGTCATTGCCAA+AGG 0.596171 3_4:-77948773 None:intergenic
ACTCTGGGGAAGATCATTGG+AGG 0.600178 3_4:+77948653 Msa0524470:CDS
CAGTAGGTGCATATGGAGGT+AGG 0.601307 3_4:+77948684 Msa0524470:CDS
AGAAGCTTTCGCAGCTGCAA+AGG 0.604865 3_4:+77947715 Msa0524470:CDS
CAGGGCATGCAATATGTGGT+GGG 0.605835 3_4:+77948894 Msa0524470:CDS
ACCAGGCTGGGACGTTGAGT+GGG 0.609650 3_4:+77948747 Msa0524470:CDS
CTGGGGAAGATCATTGGAGG+GGG 0.612965 3_4:+77948656 Msa0524470:CDS
AACTTCATCAAACACGAGAA+GGG 0.614126 3_4:-77948564 None:intergenic
TCCGGCACAGAAGCATGCAT+GGG 0.618306 3_4:+77948209 Msa0524470:CDS
AACAGGTTCGAGGAAGACTA+CGG 0.621214 3_4:-77948465 None:intergenic
CGTCAAAGGTGCTCGCATGT+GGG 0.625959 3_4:+77947901 Msa0524470:CDS
AACCCAGCCTCAAACTGTGA+AGG 0.634803 3_4:-77949049 None:intergenic
AAGATCTTTGAAGCCAACAA+AGG 0.638698 3_4:+77948434 Msa0524470:CDS
GCATCTGTGAAATTGTACAC+AGG 0.641026 3_4:-77948956 None:intergenic
GGAATCAGGAAGTCCTAGGG+TGG 0.643441 3_4:-77948342 None:intergenic
CGGTATAAGCACGGGCAAGG+CGG 0.653099 3_4:-77948238 None:intergenic
CAGCAGCAAAGTCATTGAAG+GGG 0.654908 3_4:-77948406 None:intergenic
GAGAGATATTATGGAGACCG+TGG 0.661183 3_4:+77948706 Msa0524470:CDS
TCTGGGGAAGATCATTGGAG+GGG 0.662523 3_4:+77948655 Msa0524470:CDS
AGCAGCAAAGTCATTGAAGG+GGG 0.664856 3_4:-77948405 None:intergenic
CTCTGGGGAAGATCATTGGA+GGG 0.675119 3_4:+77948654 Msa0524470:CDS
TAACAAGAAAAGGATCAGCA+TGG 0.678181 3_4:-77948301 None:intergenic
TTCCTTGCGCAAAATCACCA+AGG 0.686509 3_4:+77948532 Msa0524470:CDS
TTGCCAGTAGGTGCATATGG+AGG 0.697062 3_4:+77948680 Msa0524470:CDS
GGCAGCTTTAGGAACACCAG+GGG 0.703847 3_4:-77948363 None:intergenic
TGGCAGCTTTAGGAACACCA+GGG 0.708271 3_4:-77948364 None:intergenic
AGGCATTATAAGTCGAACAA+CGG 0.716492 3_4:-77949350 None:intergenic
GATTAGGAATTGATGCCTGG+AGG 0.717601 3_4:+77947818 Msa0524470:intron
CTCCTGATATAACAACTCTG+GGG 0.744293 3_4:+77948639 Msa0524470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACATAAAAGTTTGA+AGG - chr3_4:77948056-77948075 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG + chr3_4:77948058-77948077 Msa0524470:intron 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG + chr3_4:77949188-77949207 Msa0524470:three_prime_UTR 15.0%
!! ATTAGATCTATGTATTATTA+TGG + chr3_4:77949215-77949234 Msa0524470:three_prime_UTR 15.0%
!! AATTAAACATAAAAGTTTGA+AGG - chr3_4:77948056-77948075 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG + chr3_4:77948058-77948077 Msa0524470:intron 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG + chr3_4:77949188-77949207 Msa0524470:three_prime_UTR 15.0%
!! ATTAGATCTATGTATTATTA+TGG + chr3_4:77949215-77949234 Msa0524470:three_prime_UTR 15.0%
!!! ATGTAATAATCGATTTGATT+AGG + chr3_4:77947802-77947821 Msa0524470:intron 20.0%
!!! ATGTAATAATCGATTTGATT+AGG + chr3_4:77947802-77947821 Msa0524470:intron 20.0%
!! TCTTATCTATCATTCTGAAA+TGG + chr3_4:77947544-77947563 Msa0524470:CDS 25.0%
! AATATATGAGAGAATTGAAG+AGG - chr3_4:77948021-77948040 None:intergenic 25.0%
!! TCTTATCTATCATTCTGAAA+TGG + chr3_4:77947544-77947563 Msa0524470:CDS 25.0%
! AATATATGAGAGAATTGAAG+AGG - chr3_4:77948021-77948040 None:intergenic 25.0%
TTGACGGAATCAATGATAAT+TGG - chr3_4:77947887-77947906 None:intergenic 30.0%
!! ATTATCATTGATTCCGTCAA+AGG + chr3_4:77947887-77947906 Msa0524470:CDS 30.0%
! AACCAATACATTGACTATGT+TGG + chr3_4:77947935-77947954 Msa0524470:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG - chr3_4:77947940-77947959 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr3_4:77948515-77948534 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr3_4:77948833-77948852 Msa0524470:CDS 30.0%
TTGACGGAATCAATGATAAT+TGG - chr3_4:77947887-77947906 None:intergenic 30.0%
!! ATTATCATTGATTCCGTCAA+AGG + chr3_4:77947887-77947906 Msa0524470:CDS 30.0%
! AACCAATACATTGACTATGT+TGG + chr3_4:77947935-77947954 Msa0524470:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG - chr3_4:77947940-77947959 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr3_4:77948515-77948534 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr3_4:77948833-77948852 Msa0524470:CDS 30.0%
AGAAGAGAAGCAATTGAGAA+GGG - chr3_4:77947594-77947613 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG - chr3_4:77947595-77947614 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG - chr3_4:77947690-77947709 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG + chr3_4:77947815-77947834 Msa0524470:intron 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr3_4:77947942-77947961 Msa0524470:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr3_4:77947943-77947962 Msa0524470:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr3_4:77947944-77947963 Msa0524470:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr3_4:77948134-77948153 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG - chr3_4:77948182-77948201 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG - chr3_4:77948183-77948202 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr3_4:77948191-77948210 Msa0524470:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr3_4:77948265-77948284 Msa0524470:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr3_4:77948266-77948285 Msa0524470:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr3_4:77948278-77948297 Msa0524470:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr3_4:77948304-77948323 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr3_4:77948304-77948323 Msa0524470:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr3_4:77948434-77948453 Msa0524470:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr3_4:77948501-77948520 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG - chr3_4:77948567-77948586 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr3_4:77948568-77948587 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr3_4:77948572-77948591 Msa0524470:CDS 35.0%
AACTCCTGATATAACAACTC+TGG + chr3_4:77948637-77948656 Msa0524470:CDS 35.0%
ACTCCTGATATAACAACTCT+GGG + chr3_4:77948638-77948657 Msa0524470:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr3_4:77948796-77948815 Msa0524470:CDS 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr3_4:77948824-77948843 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr3_4:77948905-77948924 Msa0524470:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr3_4:77948906-77948925 Msa0524470:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG + chr3_4:77948915-77948934 Msa0524470:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr3_4:77948932-77948951 Msa0524470:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr3_4:77948997-77949016 Msa0524470:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr3_4:77948998-77949017 Msa0524470:CDS 35.0%
AGGCATTATAAGTCGAACAA+CGG - chr3_4:77949353-77949372 None:intergenic 35.0%
AGAAGAGAAGCAATTGAGAA+GGG - chr3_4:77947594-77947613 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG - chr3_4:77947595-77947614 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG - chr3_4:77947690-77947709 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG + chr3_4:77947815-77947834 Msa0524470:intron 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr3_4:77947942-77947961 Msa0524470:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr3_4:77947943-77947962 Msa0524470:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr3_4:77947944-77947963 Msa0524470:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr3_4:77948134-77948153 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG - chr3_4:77948182-77948201 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG - chr3_4:77948183-77948202 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr3_4:77948191-77948210 Msa0524470:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr3_4:77948265-77948284 Msa0524470:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr3_4:77948266-77948285 Msa0524470:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr3_4:77948278-77948297 Msa0524470:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr3_4:77948304-77948323 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr3_4:77948304-77948323 Msa0524470:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr3_4:77948434-77948453 Msa0524470:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr3_4:77948501-77948520 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG - chr3_4:77948567-77948586 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr3_4:77948568-77948587 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr3_4:77948572-77948591 Msa0524470:CDS 35.0%
AACTCCTGATATAACAACTC+TGG + chr3_4:77948637-77948656 Msa0524470:CDS 35.0%
ACTCCTGATATAACAACTCT+GGG + chr3_4:77948638-77948657 Msa0524470:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr3_4:77948796-77948815 Msa0524470:CDS 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr3_4:77948824-77948843 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr3_4:77948905-77948924 Msa0524470:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr3_4:77948906-77948925 Msa0524470:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG + chr3_4:77948915-77948934 Msa0524470:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr3_4:77948932-77948951 Msa0524470:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr3_4:77948997-77949016 Msa0524470:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr3_4:77948998-77949017 Msa0524470:CDS 35.0%
AGGCATTATAAGTCGAACAA+CGG - chr3_4:77949353-77949372 None:intergenic 35.0%
!! TCATTCTGAAATGGCTGCTT+CGG + chr3_4:77947553-77947572 Msa0524470:CDS 40.0%
CCATAGTCAAAGAACGAGTT+CGG - chr3_4:77947640-77947659 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr3_4:77947854-77947873 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr3_4:77947854-77947873 Msa0524470:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr3_4:77948092-77948111 Msa0524470:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr3_4:77948104-77948123 Msa0524470:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr3_4:77948142-77948161 Msa0524470:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr3_4:77948261-77948280 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr3_4:77948308-77948327 Msa0524470:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr3_4:77948314-77948333 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr3_4:77948314-77948333 Msa0524470:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr3_4:77948410-77948429 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr3_4:77948411-77948430 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG - chr3_4:77948478-77948497 None:intergenic 40.0%
GAACCTGTTGTTGGAAATTC+CGG + chr3_4:77948479-77948498 Msa0524470:CDS 40.0%
AAACCGGAATTTCCAACAAC+AGG - chr3_4:77948485-77948504 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr3_4:77948521-77948540 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr3_4:77948639-77948658 Msa0524470:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr3_4:77948644-77948663 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr3_4:77948697-77948716 Msa0524470:CDS 40.0%
GCCAGGAACTTATGAATACT+TGG + chr3_4:77948820-77948839 Msa0524470:CDS 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr3_4:77948848-77948867 Msa0524470:CDS 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr3_4:77948871-77948890 Msa0524470:CDS 40.0%
GGGCATATAAATGGGATGTT+TGG + chr3_4:77948914-77948933 Msa0524470:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr3_4:77948959-77948978 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr3_4:77948999-77949018 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr3_4:77948996-77949015 Msa0524470:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr3_4:77949024-77949043 Msa0524470:CDS 40.0%
CTTCCTGTATCTAGTCTCAT+CGG + chr3_4:77949269-77949288 Msa0524470:three_prime_UTR 40.0%
!! TCATTCTGAAATGGCTGCTT+CGG + chr3_4:77947553-77947572 Msa0524470:CDS 40.0%
CCATAGTCAAAGAACGAGTT+CGG - chr3_4:77947640-77947659 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr3_4:77947854-77947873 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr3_4:77947854-77947873 Msa0524470:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr3_4:77948092-77948111 Msa0524470:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr3_4:77948104-77948123 Msa0524470:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr3_4:77948142-77948161 Msa0524470:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr3_4:77948261-77948280 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr3_4:77948308-77948327 Msa0524470:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr3_4:77948314-77948333 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr3_4:77948314-77948333 Msa0524470:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr3_4:77948410-77948429 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr3_4:77948411-77948430 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG - chr3_4:77948478-77948497 None:intergenic 40.0%
GAACCTGTTGTTGGAAATTC+CGG + chr3_4:77948479-77948498 Msa0524470:CDS 40.0%
AAACCGGAATTTCCAACAAC+AGG - chr3_4:77948485-77948504 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr3_4:77948521-77948540 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr3_4:77948639-77948658 Msa0524470:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr3_4:77948644-77948663 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr3_4:77948697-77948716 Msa0524470:CDS 40.0%
GCCAGGAACTTATGAATACT+TGG + chr3_4:77948820-77948839 Msa0524470:CDS 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr3_4:77948848-77948867 Msa0524470:CDS 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr3_4:77948871-77948890 Msa0524470:CDS 40.0%
GGGCATATAAATGGGATGTT+TGG + chr3_4:77948914-77948933 Msa0524470:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr3_4:77948959-77948978 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr3_4:77948999-77949018 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr3_4:77948996-77949015 Msa0524470:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr3_4:77949024-77949043 Msa0524470:CDS 40.0%
CTTCCTGTATCTAGTCTCAT+CGG + chr3_4:77949269-77949288 Msa0524470:three_prime_UTR 40.0%
!! CATTCTGAAATGGCTGCTTC+GGG + chr3_4:77947554-77947573 Msa0524470:CDS 45.0%
CCGAACTCGTTCTTTGACTA+TGG + chr3_4:77947637-77947656 Msa0524470:CDS 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG - chr3_4:77947683-77947702 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG - chr3_4:77947684-77947703 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG + chr3_4:77947818-77947837 Msa0524470:intron 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr3_4:77947857-77947876 Msa0524470:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr3_4:77947959-77947978 Msa0524470:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr3_4:77947971-77947990 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr3_4:77947976-77947995 Msa0524470:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr3_4:77948090-77948109 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr3_4:77948172-77948191 Msa0524470:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr3_4:77948250-77948269 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr3_4:77948377-77948396 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr3_4:77948408-77948427 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr3_4:77948409-77948428 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr3_4:77948450-77948469 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG - chr3_4:77948468-77948487 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr3_4:77948532-77948551 Msa0524470:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr3_4:77948590-77948609 Msa0524470:CDS 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr3_4:77948611-77948630 Msa0524470:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr3_4:77948650-77948669 Msa0524470:CDS 45.0%
GAGAGATATTATGGAGACCG+TGG + chr3_4:77948706-77948725 Msa0524470:CDS 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr3_4:77948770-77948789 Msa0524470:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr3_4:77948863-77948882 Msa0524470:CDS 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr3_4:77948876-77948895 Msa0524470:CDS 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr3_4:77949013-77949032 Msa0524470:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr3_4:77949042-77949061 Msa0524470:CDS 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr3_4:77949077-77949096 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr3_4:77949117-77949136 Msa0524470:CDS 45.0%
ACACCGATGAGACTAGATAC+AGG - chr3_4:77949275-77949294 None:intergenic 45.0%
!! CATTCTGAAATGGCTGCTTC+GGG + chr3_4:77947554-77947573 Msa0524470:CDS 45.0%
CCGAACTCGTTCTTTGACTA+TGG + chr3_4:77947637-77947656 Msa0524470:CDS 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG - chr3_4:77947683-77947702 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG - chr3_4:77947684-77947703 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG + chr3_4:77947818-77947837 Msa0524470:intron 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr3_4:77947857-77947876 Msa0524470:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr3_4:77947959-77947978 Msa0524470:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr3_4:77947971-77947990 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr3_4:77947976-77947995 Msa0524470:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr3_4:77948090-77948109 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr3_4:77948172-77948191 Msa0524470:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr3_4:77948250-77948269 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr3_4:77948377-77948396 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr3_4:77948408-77948427 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr3_4:77948409-77948428 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr3_4:77948450-77948469 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG - chr3_4:77948468-77948487 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr3_4:77948532-77948551 Msa0524470:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr3_4:77948590-77948609 Msa0524470:CDS 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr3_4:77948611-77948630 Msa0524470:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr3_4:77948650-77948669 Msa0524470:CDS 45.0%
GAGAGATATTATGGAGACCG+TGG + chr3_4:77948706-77948725 Msa0524470:CDS 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr3_4:77948770-77948789 Msa0524470:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr3_4:77948863-77948882 Msa0524470:CDS 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr3_4:77948876-77948895 Msa0524470:CDS 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr3_4:77949013-77949032 Msa0524470:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr3_4:77949042-77949061 Msa0524470:CDS 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr3_4:77949077-77949096 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr3_4:77949117-77949136 Msa0524470:CDS 45.0%
ACACCGATGAGACTAGATAC+AGG - chr3_4:77949275-77949294 None:intergenic 45.0%
AGAAGCTTTCGCAGCTGCAA+AGG + chr3_4:77947715-77947734 Msa0524470:CDS 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr3_4:77948120-77948139 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr3_4:77948249-77948268 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr3_4:77948348-77948367 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr3_4:77948359-77948378 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr3_4:77948367-77948386 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr3_4:77948387-77948406 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr3_4:77948399-77948418 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr3_4:77948400-77948419 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG + chr3_4:77948470-77948489 Msa0524470:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr3_4:77948537-77948556 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr3_4:77948552-77948571 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr3_4:77948593-77948612 Msa0524470:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG - chr3_4:77948601-77948620 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr3_4:77948653-77948672 Msa0524470:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr3_4:77948654-77948673 Msa0524470:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr3_4:77948655-77948674 Msa0524470:CDS 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr3_4:77948677-77948696 Msa0524470:CDS 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr3_4:77948680-77948699 Msa0524470:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG - chr3_4:77948686-77948705 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr3_4:77948684-77948703 Msa0524470:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr3_4:77948712-77948731 Msa0524470:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr3_4:77948757-77948776 Msa0524470:CDS 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr3_4:77948776-77948795 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr3_4:77948803-77948822 Msa0524470:CDS 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr3_4:77948875-77948894 Msa0524470:CDS 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr3_4:77948890-77948909 Msa0524470:CDS 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr3_4:77948894-77948913 Msa0524470:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr3_4:77949047-77949066 Msa0524470:CDS 50.0%
AACCCAGCCTCAAACTGTGA+AGG - chr3_4:77949052-77949071 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr3_4:77949116-77949135 Msa0524470:CDS 50.0%
AGAAGCTTTCGCAGCTGCAA+AGG + chr3_4:77947715-77947734 Msa0524470:CDS 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr3_4:77948120-77948139 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr3_4:77948249-77948268 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr3_4:77948348-77948367 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr3_4:77948359-77948378 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr3_4:77948367-77948386 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr3_4:77948387-77948406 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr3_4:77948399-77948418 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr3_4:77948400-77948419 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG + chr3_4:77948470-77948489 Msa0524470:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr3_4:77948537-77948556 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr3_4:77948552-77948571 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr3_4:77948593-77948612 Msa0524470:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG - chr3_4:77948601-77948620 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr3_4:77948653-77948672 Msa0524470:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr3_4:77948654-77948673 Msa0524470:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr3_4:77948655-77948674 Msa0524470:CDS 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr3_4:77948677-77948696 Msa0524470:CDS 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr3_4:77948680-77948699 Msa0524470:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG - chr3_4:77948686-77948705 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr3_4:77948684-77948703 Msa0524470:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr3_4:77948712-77948731 Msa0524470:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr3_4:77948757-77948776 Msa0524470:CDS 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr3_4:77948776-77948795 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr3_4:77948803-77948822 Msa0524470:CDS 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr3_4:77948875-77948894 Msa0524470:CDS 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr3_4:77948890-77948909 Msa0524470:CDS 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr3_4:77948894-77948913 Msa0524470:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr3_4:77949047-77949066 Msa0524470:CDS 50.0%
AACCCAGCCTCAAACTGTGA+AGG - chr3_4:77949052-77949071 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr3_4:77949116-77949135 Msa0524470:CDS 50.0%
! ATGGCTGCTTCGGGTATTGC+AGG + chr3_4:77947563-77947582 Msa0524470:CDS 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG + chr3_4:77947564-77947583 Msa0524470:CDS 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG - chr3_4:77947676-77947695 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr3_4:77947836-77947855 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr3_4:77947903-77947922 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr3_4:77947901-77947920 Msa0524470:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr3_4:77947911-77947930 Msa0524470:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG + chr3_4:77948208-77948227 Msa0524470:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG + chr3_4:77948209-77948228 Msa0524470:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG - chr3_4:77948213-77948232 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr3_4:77948345-77948364 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr3_4:77948349-77948368 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr3_4:77948347-77948366 Msa0524470:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr3_4:77948366-77948385 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr3_4:77948368-77948387 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr3_4:77948390-77948409 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr3_4:77948656-77948675 Msa0524470:CDS 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr3_4:77948668-77948687 Msa0524470:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr3_4:77948735-77948754 Msa0524470:CDS 55.0%
AACGTCCCAGCCTGGTACAT+AGG - chr3_4:77948743-77948762 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr3_4:77948893-77948912 Msa0524470:CDS 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr3_4:77949046-77949065 Msa0524470:CDS 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr3_4:77949108-77949127 Msa0524470:CDS 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr3_4:77949113-77949132 None:intergenic 55.0%
! ATGGCTGCTTCGGGTATTGC+AGG + chr3_4:77947563-77947582 Msa0524470:CDS 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG + chr3_4:77947564-77947583 Msa0524470:CDS 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG - chr3_4:77947676-77947695 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr3_4:77947836-77947855 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr3_4:77947903-77947922 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr3_4:77947901-77947920 Msa0524470:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr3_4:77947911-77947930 Msa0524470:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG + chr3_4:77948208-77948227 Msa0524470:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG + chr3_4:77948209-77948228 Msa0524470:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG - chr3_4:77948213-77948232 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr3_4:77948345-77948364 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr3_4:77948349-77948368 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr3_4:77948347-77948366 Msa0524470:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr3_4:77948366-77948385 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr3_4:77948368-77948387 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr3_4:77948390-77948409 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr3_4:77948656-77948675 Msa0524470:CDS 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr3_4:77948668-77948687 Msa0524470:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr3_4:77948735-77948754 Msa0524470:CDS 55.0%
AACGTCCCAGCCTGGTACAT+AGG - chr3_4:77948743-77948762 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr3_4:77948893-77948912 Msa0524470:CDS 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr3_4:77949046-77949065 Msa0524470:CDS 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr3_4:77949108-77949127 Msa0524470:CDS 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr3_4:77949113-77949132 None:intergenic 55.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG - chr3_4:77947672-77947691 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr3_4:77947900-77947919 Msa0524470:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr3_4:77948241-77948260 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr3_4:77948239-77948258 Msa0524470:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr3_4:77948244-77948263 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr3_4:77948329-77948348 Msa0524470:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr3_4:77948730-77948749 Msa0524470:CDS 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr3_4:77948734-77948753 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr3_4:77948734-77948753 Msa0524470:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr3_4:77948746-77948765 Msa0524470:CDS 60.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr3_4:77948747-77948766 Msa0524470:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr3_4:77949060-77949079 Msa0524470:CDS 60.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG - chr3_4:77947672-77947691 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr3_4:77947900-77947919 Msa0524470:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr3_4:77948241-77948260 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr3_4:77948239-77948258 Msa0524470:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr3_4:77948244-77948263 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr3_4:77948329-77948348 Msa0524470:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr3_4:77948730-77948749 Msa0524470:CDS 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr3_4:77948734-77948753 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr3_4:77948734-77948753 Msa0524470:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr3_4:77948746-77948765 Msa0524470:CDS 60.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr3_4:77948747-77948766 Msa0524470:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr3_4:77949060-77949079 Msa0524470:CDS 60.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr3_4:77948726-77948745 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr3_4:77948751-77948770 None:intergenic 65.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr3_4:77948726-77948745 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr3_4:77948751-77948770 None:intergenic 65.0%
! GGTGCTGGGCTTCTGGTCGG+TGG - chr3_4:77947669-77947688 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr3_4:77948716-77948735 Msa0524470:CDS 70.0%
! GGTGCTGGGCTTCTGGTCGG+TGG - chr3_4:77947669-77947688 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr3_4:77948716-77948735 Msa0524470:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77947493 77949386 77947493 ID=Msa0524470;Name=Msa0524470
chr3_4 mRNA 77947493 77949386 77947493 ID=Msa0524470-mRNA-1;Parent=Msa0524470;Name=Msa0524470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=7|1|1|1|1|1|3|239|492
chr3_4 exon 77947493 77947736 77947493 ID=Msa0524470-mRNA-1:exon:22939;Parent=Msa0524470-mRNA-1
chr3_4 exon 77947824 77947997 77947824 ID=Msa0524470-mRNA-1:exon:22940;Parent=Msa0524470-mRNA-1
chr3_4 exon 77948080 77949386 77948080 ID=Msa0524470-mRNA-1:exon:22941;Parent=Msa0524470-mRNA-1
chr3_4 five_prime_UTR 77947493 77947499 77947493 ID=Msa0524470-mRNA-1:five_prime_utr;Parent=Msa0524470-mRNA-1
chr3_4 CDS 77947500 77947736 77947500 ID=Msa0524470-mRNA-1:cds;Parent=Msa0524470-mRNA-1
chr3_4 CDS 77947824 77947997 77947824 ID=Msa0524470-mRNA-1:cds;Parent=Msa0524470-mRNA-1
chr3_4 CDS 77948080 77949147 77948080 ID=Msa0524470-mRNA-1:cds;Parent=Msa0524470-mRNA-1
chr3_4 three_prime_UTR 77949148 77949386 77949148 ID=Msa0524470-mRNA-1:three_prime_utr;Parent=Msa0524470-mRNA-1
Gene Sequence

>Msa0524470

ATGTTAATAATAATAATAATAGAGAGAGAAAGAGAGATTGAAAATCTTATCTATCATTCTGAAATGGCTGCTTCGGGTATTGCAGGGATTACCCTTCTCAATTGCTTCTCTTCTTCTTCTTCTTCATCAGCGAGATGCCGAACTCGTTCTTTGACTATGGCTGTTTCCACCGACCAGAAGCCCAGCACCGAAAAACTCACTCTTCGCAAATCTGAAGAAGCTTTCGCAGCTGCAAAGGAATTGATGCCTGGAGGTGTGAACTCTCCTGTTCGTGCTTTCAAATCAGTTGGTGGACAACCAATTATCATTGATTCCGTCAAAGGTGCTCGCATGTGGGACATTGATGGCAACCAATACATTGACTATGTTGGTTCTTGGGGTCCTGCAATTATTGGTCACGCTGATGATCAGGTACTCTCCGCTCTTGCTGAGACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTTCTTGAAAACACTCTAGCTGAGATGGTTATCTCTGCTGTTCCCAGCATTGAAATGGTCAGATTTGTCAATTCCGGCACAGAAGCATGCATGGGTGCACTCCGCCTTGCCCGTGCTTATACCGGCAAAGAGAAGATCATCAAGTTTGAGGGATGTTATCACGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCCTAGGACTTCCTGATTCCCCTGGTGTTCCTAAAGCTGCCACCAATGAAACCCTTACAGCCCCCTTCAATGACTTTGCTGCTGTTGAGAAGATCTTTGAAGCCAACAAAGGAGAGATAGCCGTAGTCTTCCTCGAACCTGTTGTTGGAAATTCCGGTTTCATTACTCCTAAACCTGATTTTCTTAGTTCCTTGCGCAAAATCACCAAGGAGAACAATGCCCTTCTCGTGTTTGATGAAGTTATGACTGGATTCCGTTTGTCGTATGGAGGTGCTCAACAATACTTTGGCATAACTCCTGATATAACAACTCTGGGGAAGATCATTGGAGGGGGTTTGCCAGTAGGTGCATATGGAGGTAGGAGAGATATTATGGAGACCGTGGCTCCGGCTGGACCTATGTACCAGGCTGGGACGTTGAGTGGGAATCCTTTGGCAATGACTGCAGGCATAGAAACTCTGAAGCGTATTAAGGAGCCAGGAACTTATGAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGCATTGTTGAAGCTGGTAAGAAGGCAGGGCATGCAATATGTGGTGGGCATATAAATGGGATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGTACAATTTCACAGATGCAAAAAAGAGTGACACTGCCAAGTTTGCTAAGTTCTTCTGGGGTATGTTAGCAGAAGGTGTCTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACCAGCTTGGCACATACTTCTGATGACATCAAGAAGACCATTGCTGCTGCTGAGAAGGTCTTTAGGGAGATCTGA
Protein sequence

>Msa0524470

MLIIIIIEREREIENLIYHSEMAASGIAGITLLNCFSSSSSSSARCRTRSLTMAVSTDQKPSTEKLTLRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLSALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEANKGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQQYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIETLKRIKEPGTYEYLDKITGELVQGIVEAGKKAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI*