AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376680 MtrunA17_Chr3g0145711 98.514 471 4 1 1 471 1 468 0.0 947
Msa1376680 MtrunA17_Chr7g0233361 34.448 299 169 10 79 364 87 371 1.00e-33 132
Msa1376680 MtrunA17_Chr8g0376561 30.537 298 182 8 79 363 52 337 2.02e-31 125
Msa1376680 MtrunA17_Chr7g0244421 27.946 297 197 8 79 363 83 374 8.15e-21 95.1
Msa1376680 MtrunA17_Chr8g0382871 25.373 335 219 11 78 394 82 403 2.10e-17 84.7
Msa1376680 MtrunA17_Chr3g0106581 25.524 286 182 8 40 312 51 318 7.08e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376680 AT3G48730.1 79.958 474 86 4 1 471 5 472 0.0 777
Msa1376680 AT5G63570.1 79.560 455 88 2 17 471 25 474 0.0 755
Msa1376680 AT5G63570.2 82.725 411 71 0 61 471 1 411 0.0 719
Msa1376680 AT5G46180.1 28.882 322 204 8 79 387 59 368 4.27e-30 122
Msa1376680 AT1G80600.1 29.773 309 170 10 79 364 77 361 9.28e-26 109
Msa1376680 AT3G08860.2 26.667 315 206 11 79 377 83 388 3.81e-20 93.2
Msa1376680 AT3G08860.1 26.667 315 206 11 79 377 83 388 5.26e-20 92.8
Msa1376680 AT4G39660.1 25.519 337 216 11 78 394 77 398 1.46e-19 91.7
Msa1376680 AT4G39660.2 25.538 325 207 11 90 394 14 323 3.19e-19 90.1
Msa1376680 AT2G38400.2 25.444 338 214 10 78 394 79 399 1.91e-16 82.0
Msa1376680 AT2G38400.1 25.444 338 214 10 78 394 79 399 2.07e-16 82.0

Find 158 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTTGCTAAGTTCTTC+TGG 0.125787 tig0019825:-138711 Msa1376680:CDS
TCTTGGGGTCCTGCAATTAT+TGG 0.214742 tig0019825:-139748 Msa1376680:CDS
ATTAGATCTATGTATTATTA+TGG 0.232859 tig0019825:-138492 Msa1376680:three_prime_UTR
TTGACGGAATCAATGATAAT+TGG 0.243448 tig0019825:+139823 None:intergenic
CCGAACTCGTTCTTTGACTA+TGG 0.262819 tig0019825:-140073 Msa1376680:CDS
TGGAGGTAGGAGAGATATTA+TGG 0.268158 tig0019825:-139010 Msa1376680:CDS
CATTGACTATGTTGGTTCTT+GGG 0.275476 tig0019825:-139764 Msa1376680:CDS
GTTTCATTGGTGGCAGCTTT+AGG 0.281598 tig0019825:+139333 None:intergenic
CTGCTGCTGAGAAGGTCTTT+AGG 0.282740 tig0019825:-138591 Msa1376680:CDS
TGCTGCTGAGAAGGTCTTTA+GGG 0.286640 tig0019825:-138590 Msa1376680:CDS
CTTGATGATCTTCTCTTTGC+CGG 0.295779 tig0019825:+139449 None:intergenic
CGCAAGGAACTAAGAAAATC+AGG 0.299535 tig0019825:+139189 None:intergenic
ATATGTGGTGGGCATATAAA+TGG 0.309935 tig0019825:-138802 Msa1376680:CDS
TTCCCCAGAGTTGTTATATC+AGG 0.310573 tig0019825:+139066 None:intergenic
ACATTGACTATGTTGGTTCT+TGG 0.314847 tig0019825:-139765 Msa1376680:CDS
ATGGCTGCTTCGGGTATTGC+AGG 0.331193 tig0019825:-140147 Msa1376680:CDS
CAAGTTTGCTAAGTTCTTCT+GGG 0.335783 tig0019825:-138710 Msa1376680:CDS
AGAAACTCTGAAGCGTATTA+AGG 0.338134 tig0019825:-138911 Msa1376680:CDS
GAACCTGTTGTTGGAAATTC+CGG 0.340485 tig0019825:-139228 Msa1376680:CDS
GTTAGCAGAAGGTGTCTATT+TGG 0.340874 tig0019825:-138683 Msa1376680:CDS
GAATACTTGGACAAAATTAC+AGG 0.342820 tig0019825:-138874 Msa1376680:CDS
ATGGTCAGATTTGTCAATTC+CGG 0.345817 tig0019825:-139516 Msa1376680:CDS
GGCATATAAATGGGATGTTT+GGG 0.350134 tig0019825:-138792 Msa1376680:CDS
GGGCATATAAATGGGATGTT+TGG 0.352503 tig0019825:-138793 Msa1376680:CDS
GCACCTTCACAGTTTGAGGC+TGG 0.354758 tig0019825:-138661 Msa1376680:CDS
TCATTCTGAAATGGCTGCTT+CGG 0.355637 tig0019825:-140157 Msa1376680:exon
TCCAAGTATTCATAAGTTCC+TGG 0.359322 tig0019825:+138886 None:intergenic
TTAGGAACACCAGGGGAATC+AGG 0.388149 tig0019825:+139351 None:intergenic
TTTGGCACCTTCACAGTTTG+AGG 0.388856 tig0019825:-138665 Msa1376680:CDS
GGCTGTAAGGGTTTCATTGG+TGG 0.391375 tig0019825:+139323 None:intergenic
GAACTAAGAAAATCAGGTTT+AGG 0.397600 tig0019825:+139195 None:intergenic
TACGGCTATCTCTCCTTTGT+TGG 0.403214 tig0019825:+139260 None:intergenic
CATTCTGAAATGGCTGCTTC+GGG 0.408622 tig0019825:-140156 Msa1376680:exon
TATTGGTCACGCTGATGATC+AGG 0.409676 tig0019825:-139731 Msa1376680:intron
TGCTGTTCCCAGCATTGAAA+TGG 0.417543 tig0019825:-139535 Msa1376680:CDS
CCAGAAGAACTTAGCAAACT+TGG 0.420091 tig0019825:+138711 None:intergenic
TTTCTTGTTAAGGCAGGTAG+TGG 0.428022 tig0019825:-139393 Msa1376680:CDS
ATGAAGAAAGGAACCAGCTT+TGG 0.429438 tig0019825:-139603 Msa1376680:CDS
GACGTTGAGTGGGAATCCTT+TGG 0.430505 tig0019825:-138950 Msa1376680:CDS
GTCTTCCTCGAACCTGTTGT+TGG 0.431603 tig0019825:-139237 Msa1376680:CDS
CACCTTCACAGTTTGAGGCT+GGG 0.433643 tig0019825:-138660 Msa1376680:CDS
TCTTATCTATCATTCTGAAA+TGG 0.436545 tig0019825:-140166 Msa1376680:exon
CTACCTGCCTTAACAAGAAA+AGG 0.436782 tig0019825:+139396 None:intergenic
GGTTTGCCAGTAGGTGCATA+TGG 0.445263 tig0019825:-139030 Msa1376680:CDS
AAACCGGAATTTCCAACAAC+AGG 0.445497 tig0019825:+139225 None:intergenic
ACAACTCTGGGGAAGATCAT+TGG 0.450763 tig0019825:-139057 Msa1376680:CDS
CCACATGCGAGCACCTTTGA+CGG 0.452870 tig0019825:+139807 None:intergenic
ACTGGATTCCGTTTGTCGTA+TGG 0.457113 tig0019825:-139117 Msa1376680:CDS
TCAGCGTGACCAATAATTGC+AGG 0.459493 tig0019825:+139739 None:intergenic
ATTGACTATGTTGGTTCTTG+GGG 0.459541 tig0019825:-139763 Msa1376680:CDS
TGAGGCTGGGTTCACCAGCT+TGG 0.460390 tig0019825:-138647 Msa1376680:CDS
AAATCTGACCATTTCAATGC+TGG 0.463786 tig0019825:+139527 None:intergenic
CGCCTTGCCCGTGCTTATAC+CGG 0.463976 tig0019825:-139468 Msa1376680:CDS
AACTCCTGATATAACAACTC+TGG 0.465327 tig0019825:-139070 Msa1376680:CDS
CAGGGGAATCAGGAAGTCCT+AGG 0.466845 tig0019825:+139361 None:intergenic
TTTGATTAGGAATTGATGCC+TGG 0.467656 tig0019825:-139892 Msa1376680:intron
ACTCCTGATATAACAACTCT+GGG 0.468947 tig0019825:-139069 Msa1376680:CDS
ATTATCATTGATTCCGTCAA+AGG 0.468966 tig0019825:-139820 Msa1376680:CDS
ATGGAGACCGTGGCTCCGGC+TGG 0.468994 tig0019825:-138991 Msa1376680:CDS
AGAGAAGATCATCAAGTTTG+AGG 0.471292 tig0019825:-139442 Msa1376680:CDS
ATTACAGGTGAGCTTGTTCA+AGG 0.477356 tig0019825:-138859 Msa1376680:CDS
AAGACAAGGTGCACCAAAGC+TGG 0.477394 tig0019825:+139590 None:intergenic
GAGAAGATCATCAAGTTTGA+GGG 0.481387 tig0019825:-139441 Msa1376680:CDS
GACCATTGCTGCTGCTGAGA+AGG 0.485730 tig0019825:-138599 Msa1376680:CDS
CTCTTTGCCGGTATAAGCAC+GGG 0.486208 tig0019825:+139461 None:intergenic
TTCGGTGCTGGGCTTCTGGT+CGG 0.486793 tig0019825:+140041 None:intergenic
GTTCAAGGCATTGTTGAAGC+TGG 0.489925 tig0019825:-138844 Msa1376680:CDS
AACCAACATAGTCAATGTAT+TGG 0.491453 tig0019825:+139770 None:intergenic
ACTGATTTGAAAGCACGAAC+AGG 0.495762 tig0019825:+139856 None:intergenic
AAGAAGAGAAGCAATTGAGA+AGG 0.496897 tig0019825:+140118 None:intergenic
GTGTTTGATGAAGTTATGAC+TGG 0.497336 tig0019825:-139135 Msa1376680:CDS
GCCAGGAACTTATGAATACT+TGG 0.499909 tig0019825:-138887 Msa1376680:CDS
AGGAAATAACATGAAGATGC+AGG 0.500720 tig0019825:+138337 None:intergenic
GCTGGACCTATGTACCAGGC+TGG 0.502027 tig0019825:-138973 Msa1376680:CDS
AACAGCAGCAAAGTCATTGA+AGG 0.503512 tig0019825:+139299 None:intergenic
CCATAGTCAAAGAACGAGTT+CGG 0.503585 tig0019825:+140073 None:intergenic
AATCCTTTGGCAATGACTGC+AGG 0.505080 tig0019825:-138937 Msa1376680:CDS
AGAAGAGAAGCAATTGAGAA+GGG 0.505692 tig0019825:+140119 None:intergenic
TTCCGGCACAGAAGCATGCA+TGG 0.507223 tig0019825:-139499 Msa1376680:CDS
GTTCGTGCTTTCAAATCAGT+TGG 0.507920 tig0019825:-139853 Msa1376680:CDS
GAGCACCTCCATACGACAAA+CGG 0.508625 tig0019825:+139109 None:intergenic
GTTGAAGCTGGTAAGAAGGC+AGG 0.509704 tig0019825:-138832 Msa1376680:CDS
AACCAATACATTGACTATGT+TGG 0.510475 tig0019825:-139772 Msa1376680:CDS
ACAGGAGAGTTCACACCTCC+AGG 0.510938 tig0019825:+139874 None:intergenic
TATTATGGAGACCGTGGCTC+CGG 0.513114 tig0019825:-138995 Msa1376680:CDS
AACGTCCCAGCCTGGTACAT+AGG 0.518158 tig0019825:+138967 None:intergenic
GCCTGGTACATAGGTCCAGC+CGG 0.518203 tig0019825:+138976 None:intergenic
TTCTGGGGTATGTTAGCAGA+AGG 0.519712 tig0019825:-138694 Msa1376680:CDS
GACCTTCTCAGCAGCAGCAA+TGG 0.522852 tig0019825:+138597 None:intergenic
CTAGGACTTCCTGATTCCCC+TGG 0.524552 tig0019825:-139360 Msa1376680:CDS
GGTGCTGGGCTTCTGGTCGG+TGG 0.527286 tig0019825:+140044 None:intergenic
TGAAAACACTCTAGCTGAGA+TGG 0.530589 tig0019825:-139565 Msa1376680:CDS
CTACCTCCATATGCACCTAC+TGG 0.530999 tig0019825:+139024 None:intergenic
CGTGCTTTCAAATCAGTTGG+TGG 0.531486 tig0019825:-139850 Msa1376680:CDS
CCGTCAAAGGTGCTCGCATG+TGG 0.532480 tig0019825:-139807 Msa1376680:CDS
TACCAGGCTGGGACGTTGAG+TGG 0.532692 tig0019825:-138961 Msa1376680:CDS
GAGAAGGGCATTGTTCTCCT+TGG 0.539822 tig0019825:+139158 None:intergenic
CATTGTTGAAGCTGGTAAGA+AGG 0.540418 tig0019825:-138836 Msa1376680:CDS
AGGTTTAGGAGTAATGAAAC+CGG 0.540434 tig0019825:+139209 None:intergenic
GGAGGTGCTCAACAATACTT+TGG 0.540803 tig0019825:-139096 Msa1376680:CDS
CTGAAGCGTATTAAGGAGCC+AGG 0.542721 tig0019825:-138904 Msa1376680:CDS
CTGGACCTATGTACCAGGCT+GGG 0.542962 tig0019825:-138972 Msa1376680:CDS
AATTTCCAACAACAGGTTCG+AGG 0.544211 tig0019825:+139232 None:intergenic
TGCCGGTATAAGCACGGGCA+AGG 0.545023 tig0019825:+139466 None:intergenic
CTTCCTGTATCTAGTCTCAT+CGG 0.545827 tig0019825:-138438 Msa1376680:three_prime_UTR
ATCAGAAGTATGTGCCAAGC+TGG 0.549286 tig0019825:+138633 None:intergenic
TCCGGCTGGACCTATGTACC+AGG 0.550164 tig0019825:-138977 Msa1376680:CDS
AATCTGACCATTTCAATGCT+GGG 0.551104 tig0019825:+139528 None:intergenic
GCTCGCATGTGGGACATTGA+TGG 0.552562 tig0019825:-139796 Msa1376680:CDS
GGTAGTGGAGTTGCCACCCT+AGG 0.552592 tig0019825:-139378 Msa1376680:CDS
TCCCACTCAACGTCCCAGCC+TGG 0.554590 tig0019825:+138959 None:intergenic
ACCCATGCATGCTTCTGTGC+CGG 0.554652 tig0019825:+139497 None:intergenic
CTTGCTGAGACAATGAAGAA+AGG 0.555611 tig0019825:-139615 Msa1376680:CDS
TCTCTTTGCCGGTATAAGCA+CGG 0.568722 tig0019825:+139460 None:intergenic
CATAGGTCCAGCCGGAGCCA+CGG 0.570397 tig0019825:+138984 None:intergenic
GTGGCAGCTTTAGGAACACC+AGG 0.571077 tig0019825:+139342 None:intergenic
ACACCGATGAGACTAGATAC+AGG 0.575451 tig0019825:+138435 None:intergenic
ACAGCAGCAAAGTCATTGAA+GGG 0.578728 tig0019825:+139300 None:intergenic
GCAGGGCATGCAATATGTGG+TGG 0.581592 tig0019825:-138814 Msa1376680:CDS
TATGTGGTGGGCATATAAAT+GGG 0.582602 tig0019825:-138801 Msa1376680:CDS
AAGTTTGCTAAGTTCTTCTG+GGG 0.584115 tig0019825:-138709 Msa1376680:CDS
TAACTTCATCAAACACGAGA+AGG 0.585499 tig0019825:+139142 None:intergenic
TTGAAGCTGGTAAGAAGGCA+GGG 0.585619 tig0019825:-138831 Msa1376680:CDS
TGGCTGCTTCGGGTATTGCA+GGG 0.586719 tig0019825:-140146 Msa1376680:CDS
AGGGGAATCAGGAAGTCCTA+GGG 0.587377 tig0019825:+139362 None:intergenic
GGATTCCGTTTGTCGTATGG+AGG 0.588634 tig0019825:-139114 Msa1376680:CDS
AAGTTTGAGGGATGTTATCA+CGG 0.591307 tig0019825:-139429 Msa1376680:CDS
AAGGCAGGGCATGCAATATG+TGG 0.593656 tig0019825:-138817 Msa1376680:CDS
CTTCATTGTCTCAGCAAGAG+CGG 0.594962 tig0019825:+139620 None:intergenic
ATGCCTGCAGTCATTGCCAA+AGG 0.596171 tig0019825:+138934 None:intergenic
ACTCTGGGGAAGATCATTGG+AGG 0.600178 tig0019825:-139054 Msa1376680:CDS
CAGTAGGTGCATATGGAGGT+AGG 0.601307 tig0019825:-139023 Msa1376680:CDS
AGAAGCTTTCGCAGCTGCAA+AGG 0.604865 tig0019825:-139995 Msa1376680:intron
CAGGGCATGCAATATGTGGT+GGG 0.605835 tig0019825:-138813 Msa1376680:CDS
ACCAGGCTGGGACGTTGAGT+GGG 0.609650 tig0019825:-138960 Msa1376680:CDS
CTGGGGAAGATCATTGGAGG+GGG 0.612965 tig0019825:-139051 Msa1376680:CDS
AACTTCATCAAACACGAGAA+GGG 0.614126 tig0019825:+139143 None:intergenic
TCCGGCACAGAAGCATGCAT+GGG 0.618306 tig0019825:-139498 Msa1376680:CDS
AACAGGTTCGAGGAAGACTA+CGG 0.621214 tig0019825:+139242 None:intergenic
CGTCAAAGGTGCTCGCATGT+GGG 0.625959 tig0019825:-139806 Msa1376680:CDS
AACCCAGCCTCAAACTGTGA+AGG 0.634803 tig0019825:+138658 None:intergenic
AAGATCTTTGAAGCCAACAA+AGG 0.638698 tig0019825:-139273 Msa1376680:CDS
GCATCTGTGAAATTGTACAC+AGG 0.641026 tig0019825:+138751 None:intergenic
GGAATCAGGAAGTCCTAGGG+TGG 0.643441 tig0019825:+139365 None:intergenic
CGGTATAAGCACGGGCAAGG+CGG 0.653099 tig0019825:+139469 None:intergenic
CAGCAGCAAAGTCATTGAAG+GGG 0.654908 tig0019825:+139301 None:intergenic
GAGAGATATTATGGAGACCG+TGG 0.661183 tig0019825:-139001 Msa1376680:CDS
TCTGGGGAAGATCATTGGAG+GGG 0.662523 tig0019825:-139052 Msa1376680:CDS
AGCAGCAAAGTCATTGAAGG+GGG 0.664856 tig0019825:+139302 None:intergenic
CTCTGGGGAAGATCATTGGA+GGG 0.675119 tig0019825:-139053 Msa1376680:CDS
TAACAAGAAAAGGATCAGCA+TGG 0.678181 tig0019825:+139406 None:intergenic
TTCCTTGCGCAAAATCACCA+AGG 0.686509 tig0019825:-139175 Msa1376680:CDS
TTGCCAGTAGGTGCATATGG+AGG 0.697062 tig0019825:-139027 Msa1376680:CDS
GGCAGCTTTAGGAACACCAG+GGG 0.703847 tig0019825:+139344 None:intergenic
TGGCAGCTTTAGGAACACCA+GGG 0.708271 tig0019825:+139343 None:intergenic
AGGCATTATAAGTCGAACAA+CGG 0.716492 tig0019825:+138357 None:intergenic
GATTAGGAATTGATGCCTGG+AGG 0.717601 tig0019825:-139889 Msa1376680:intron
CTCCTGATATAACAACTCTG+GGG 0.744293 tig0019825:-139068 Msa1376680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACATAAAAGTTTGA+AGG + tig0019825:138907-138926 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG - tig0019825:138909-138928 Msa1376680:CDS 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG - tig0019825:140039-140058 Msa1376680:CDS 15.0%
!! ATTAGATCTATGTATTATTA+TGG - tig0019825:140066-140085 Msa1376680:CDS 15.0%
!! AATTAAACATAAAAGTTTGA+AGG + tig0019825:138907-138926 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG - tig0019825:138909-138928 Msa1376680:CDS 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG - tig0019825:140039-140058 Msa1376680:CDS 15.0%
!! ATTAGATCTATGTATTATTA+TGG - tig0019825:140066-140085 Msa1376680:CDS 15.0%
!!! ATGTAATAATCGATTTGATT+AGG - tig0019825:138653-138672 Msa1376680:CDS 20.0%
!!! ATGTAATAATCGATTTGATT+AGG - tig0019825:138653-138672 Msa1376680:CDS 20.0%
!! TCTTATCTATCATTCTGAAA+TGG - tig0019825:138392-138411 Msa1376680:three_prime_UTR 25.0%
! AATATATGAGAGAATTGAAG+AGG + tig0019825:138872-138891 None:intergenic 25.0%
!! TCTTATCTATCATTCTGAAA+TGG - tig0019825:138392-138411 Msa1376680:three_prime_UTR 25.0%
! AATATATGAGAGAATTGAAG+AGG + tig0019825:138872-138891 None:intergenic 25.0%
TTGACGGAATCAATGATAAT+TGG + tig0019825:138738-138757 None:intergenic 30.0%
!! ATTATCATTGATTCCGTCAA+AGG - tig0019825:138738-138757 Msa1376680:CDS 30.0%
! AACCAATACATTGACTATGT+TGG - tig0019825:138786-138805 Msa1376680:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG + tig0019825:138791-138810 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG + tig0019825:139366-139385 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG - tig0019825:139684-139703 Msa1376680:intron 30.0%
TTGACGGAATCAATGATAAT+TGG + tig0019825:138738-138757 None:intergenic 30.0%
!! ATTATCATTGATTCCGTCAA+AGG - tig0019825:138738-138757 Msa1376680:CDS 30.0%
! AACCAATACATTGACTATGT+TGG - tig0019825:138786-138805 Msa1376680:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG + tig0019825:138791-138810 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG + tig0019825:139366-139385 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG - tig0019825:139684-139703 Msa1376680:intron 30.0%
AGAAGAGAAGCAATTGAGAA+GGG + tig0019825:138442-138461 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG + tig0019825:138443-138462 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG + tig0019825:138538-138557 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG - tig0019825:138666-138685 Msa1376680:CDS 35.0%
!! ACATTGACTATGTTGGTTCT+TGG - tig0019825:138793-138812 Msa1376680:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG - tig0019825:138794-138813 Msa1376680:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG - tig0019825:138795-138814 Msa1376680:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG + tig0019825:138985-139004 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG + tig0019825:139033-139052 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG + tig0019825:139034-139053 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG - tig0019825:139042-139061 Msa1376680:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG - tig0019825:139116-139135 Msa1376680:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG - tig0019825:139117-139136 Msa1376680:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG - tig0019825:139129-139148 Msa1376680:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG + tig0019825:139155-139174 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG - tig0019825:139155-139174 Msa1376680:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG - tig0019825:139285-139304 Msa1376680:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG + tig0019825:139352-139371 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG + tig0019825:139418-139437 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG + tig0019825:139419-139438 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG - tig0019825:139423-139442 Msa1376680:CDS 35.0%
AACTCCTGATATAACAACTC+TGG - tig0019825:139488-139507 Msa1376680:CDS 35.0%
ACTCCTGATATAACAACTCT+GGG - tig0019825:139489-139508 Msa1376680:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG - tig0019825:139647-139666 Msa1376680:intron 35.0%
TCCAAGTATTCATAAGTTCC+TGG + tig0019825:139675-139694 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG - tig0019825:139756-139775 Msa1376680:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG - tig0019825:139757-139776 Msa1376680:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG - tig0019825:139766-139785 Msa1376680:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG - tig0019825:139783-139802 Msa1376680:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG - tig0019825:139848-139867 Msa1376680:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG - tig0019825:139849-139868 Msa1376680:CDS 35.0%
AGGCATTATAAGTCGAACAA+CGG + tig0019825:140204-140223 None:intergenic 35.0%
AGAAGAGAAGCAATTGAGAA+GGG + tig0019825:138442-138461 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG + tig0019825:138443-138462 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG + tig0019825:138538-138557 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG - tig0019825:138666-138685 Msa1376680:CDS 35.0%
!! ACATTGACTATGTTGGTTCT+TGG - tig0019825:138793-138812 Msa1376680:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG - tig0019825:138794-138813 Msa1376680:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG - tig0019825:138795-138814 Msa1376680:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG + tig0019825:138985-139004 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG + tig0019825:139033-139052 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG + tig0019825:139034-139053 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG - tig0019825:139042-139061 Msa1376680:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG - tig0019825:139116-139135 Msa1376680:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG - tig0019825:139117-139136 Msa1376680:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG - tig0019825:139129-139148 Msa1376680:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG + tig0019825:139155-139174 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG - tig0019825:139155-139174 Msa1376680:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG - tig0019825:139285-139304 Msa1376680:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG + tig0019825:139352-139371 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG + tig0019825:139418-139437 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG + tig0019825:139419-139438 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG - tig0019825:139423-139442 Msa1376680:CDS 35.0%
AACTCCTGATATAACAACTC+TGG - tig0019825:139488-139507 Msa1376680:CDS 35.0%
ACTCCTGATATAACAACTCT+GGG - tig0019825:139489-139508 Msa1376680:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG - tig0019825:139647-139666 Msa1376680:intron 35.0%
TCCAAGTATTCATAAGTTCC+TGG + tig0019825:139675-139694 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG - tig0019825:139756-139775 Msa1376680:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG - tig0019825:139757-139776 Msa1376680:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG - tig0019825:139766-139785 Msa1376680:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG - tig0019825:139783-139802 Msa1376680:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG - tig0019825:139848-139867 Msa1376680:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG - tig0019825:139849-139868 Msa1376680:CDS 35.0%
AGGCATTATAAGTCGAACAA+CGG + tig0019825:140204-140223 None:intergenic 35.0%
!! TCATTCTGAAATGGCTGCTT+CGG - tig0019825:138401-138420 Msa1376680:three_prime_UTR 40.0%
CCATAGTCAAAGAACGAGTT+CGG + tig0019825:138488-138507 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG + tig0019825:138705-138724 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG - tig0019825:138705-138724 Msa1376680:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG - tig0019825:138943-138962 Msa1376680:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG - tig0019825:138955-138974 Msa1376680:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG - tig0019825:138993-139012 Msa1376680:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG + tig0019825:139112-139131 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG - tig0019825:139159-139178 Msa1376680:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG + tig0019825:139165-139184 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG - tig0019825:139165-139184 Msa1376680:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG + tig0019825:139261-139280 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG + tig0019825:139262-139281 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG + tig0019825:139329-139348 None:intergenic 40.0%
GAACCTGTTGTTGGAAATTC+CGG - tig0019825:139330-139349 Msa1376680:CDS 40.0%
AAACCGGAATTTCCAACAAC+AGG + tig0019825:139336-139355 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG + tig0019825:139372-139391 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG - tig0019825:139490-139509 Msa1376680:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG + tig0019825:139495-139514 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG - tig0019825:139548-139567 Msa1376680:CDS 40.0%
GCCAGGAACTTATGAATACT+TGG - tig0019825:139671-139690 Msa1376680:intron 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG - tig0019825:139699-139718 Msa1376680:intron 40.0%
CATTGTTGAAGCTGGTAAGA+AGG - tig0019825:139722-139741 Msa1376680:intron 40.0%
GGGCATATAAATGGGATGTT+TGG - tig0019825:139765-139784 Msa1376680:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG + tig0019825:139810-139829 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG + tig0019825:139850-139869 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG - tig0019825:139847-139866 Msa1376680:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG - tig0019825:139875-139894 Msa1376680:CDS 40.0%
CTTCCTGTATCTAGTCTCAT+CGG - tig0019825:140120-140139 Msa1376680:CDS 40.0%
!! TCATTCTGAAATGGCTGCTT+CGG - tig0019825:138401-138420 Msa1376680:three_prime_UTR 40.0%
CCATAGTCAAAGAACGAGTT+CGG + tig0019825:138488-138507 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG + tig0019825:138705-138724 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG - tig0019825:138705-138724 Msa1376680:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG - tig0019825:138943-138962 Msa1376680:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG - tig0019825:138955-138974 Msa1376680:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG - tig0019825:138993-139012 Msa1376680:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG + tig0019825:139112-139131 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG - tig0019825:139159-139178 Msa1376680:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG + tig0019825:139165-139184 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG - tig0019825:139165-139184 Msa1376680:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG + tig0019825:139261-139280 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG + tig0019825:139262-139281 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG + tig0019825:139329-139348 None:intergenic 40.0%
GAACCTGTTGTTGGAAATTC+CGG - tig0019825:139330-139349 Msa1376680:CDS 40.0%
AAACCGGAATTTCCAACAAC+AGG + tig0019825:139336-139355 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG + tig0019825:139372-139391 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG - tig0019825:139490-139509 Msa1376680:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG + tig0019825:139495-139514 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG - tig0019825:139548-139567 Msa1376680:CDS 40.0%
GCCAGGAACTTATGAATACT+TGG - tig0019825:139671-139690 Msa1376680:intron 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG - tig0019825:139699-139718 Msa1376680:intron 40.0%
CATTGTTGAAGCTGGTAAGA+AGG - tig0019825:139722-139741 Msa1376680:intron 40.0%
GGGCATATAAATGGGATGTT+TGG - tig0019825:139765-139784 Msa1376680:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG + tig0019825:139810-139829 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG + tig0019825:139850-139869 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG - tig0019825:139847-139866 Msa1376680:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG - tig0019825:139875-139894 Msa1376680:CDS 40.0%
CTTCCTGTATCTAGTCTCAT+CGG - tig0019825:140120-140139 Msa1376680:CDS 40.0%
!! CATTCTGAAATGGCTGCTTC+GGG - tig0019825:138402-138421 Msa1376680:three_prime_UTR 45.0%
CCGAACTCGTTCTTTGACTA+TGG - tig0019825:138485-138504 Msa1376680:three_prime_UTR 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG + tig0019825:138531-138550 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG + tig0019825:138532-138551 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG - tig0019825:138669-138688 Msa1376680:CDS 45.0%
CGTGCTTTCAAATCAGTTGG+TGG - tig0019825:138708-138727 Msa1376680:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG - tig0019825:138810-138829 Msa1376680:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG + tig0019825:138822-138841 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG - tig0019825:138827-138846 Msa1376680:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG + tig0019825:138941-138960 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG - tig0019825:139023-139042 Msa1376680:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG + tig0019825:139101-139120 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG + tig0019825:139228-139247 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG + tig0019825:139259-139278 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG + tig0019825:139260-139279 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG + tig0019825:139301-139320 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG + tig0019825:139319-139338 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG - tig0019825:139383-139402 Msa1376680:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG - tig0019825:139441-139460 Msa1376680:CDS 45.0%
!! GGAGGTGCTCAACAATACTT+TGG - tig0019825:139462-139481 Msa1376680:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG - tig0019825:139501-139520 Msa1376680:CDS 45.0%
GAGAGATATTATGGAGACCG+TGG - tig0019825:139557-139576 Msa1376680:CDS 45.0%
AATCCTTTGGCAATGACTGC+AGG - tig0019825:139621-139640 Msa1376680:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG - tig0019825:139714-139733 Msa1376680:intron 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG - tig0019825:139727-139746 Msa1376680:intron 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG - tig0019825:139864-139883 Msa1376680:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG - tig0019825:139893-139912 Msa1376680:intron 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG + tig0019825:139928-139947 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG - tig0019825:139968-139987 Msa1376680:intron 45.0%
ACACCGATGAGACTAGATAC+AGG + tig0019825:140126-140145 None:intergenic 45.0%
!! CATTCTGAAATGGCTGCTTC+GGG - tig0019825:138402-138421 Msa1376680:three_prime_UTR 45.0%
CCGAACTCGTTCTTTGACTA+TGG - tig0019825:138485-138504 Msa1376680:three_prime_UTR 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG + tig0019825:138531-138550 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG + tig0019825:138532-138551 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG - tig0019825:138669-138688 Msa1376680:CDS 45.0%
CGTGCTTTCAAATCAGTTGG+TGG - tig0019825:138708-138727 Msa1376680:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG - tig0019825:138810-138829 Msa1376680:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG + tig0019825:138822-138841 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG - tig0019825:138827-138846 Msa1376680:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG + tig0019825:138941-138960 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG - tig0019825:139023-139042 Msa1376680:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG + tig0019825:139101-139120 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG + tig0019825:139228-139247 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG + tig0019825:139259-139278 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG + tig0019825:139260-139279 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG + tig0019825:139301-139320 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG + tig0019825:139319-139338 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG - tig0019825:139383-139402 Msa1376680:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG - tig0019825:139441-139460 Msa1376680:CDS 45.0%
!! GGAGGTGCTCAACAATACTT+TGG - tig0019825:139462-139481 Msa1376680:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG - tig0019825:139501-139520 Msa1376680:CDS 45.0%
GAGAGATATTATGGAGACCG+TGG - tig0019825:139557-139576 Msa1376680:CDS 45.0%
AATCCTTTGGCAATGACTGC+AGG - tig0019825:139621-139640 Msa1376680:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG - tig0019825:139714-139733 Msa1376680:intron 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG - tig0019825:139727-139746 Msa1376680:intron 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG - tig0019825:139864-139883 Msa1376680:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG - tig0019825:139893-139912 Msa1376680:intron 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG + tig0019825:139928-139947 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG - tig0019825:139968-139987 Msa1376680:intron 45.0%
ACACCGATGAGACTAGATAC+AGG + tig0019825:140126-140145 None:intergenic 45.0%
AGAAGCTTTCGCAGCTGCAA+AGG - tig0019825:138563-138582 Msa1376680:exon 50.0%
AAGACAAGGTGCACCAAAGC+TGG + tig0019825:138971-138990 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG + tig0019825:139100-139119 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG + tig0019825:139199-139218 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG + tig0019825:139210-139229 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG + tig0019825:139218-139237 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG + tig0019825:139238-139257 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG + tig0019825:139250-139269 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG + tig0019825:139251-139270 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG - tig0019825:139321-139340 Msa1376680:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG + tig0019825:139388-139407 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG + tig0019825:139403-139422 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG - tig0019825:139444-139463 Msa1376680:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG + tig0019825:139452-139471 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG - tig0019825:139504-139523 Msa1376680:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG - tig0019825:139505-139524 Msa1376680:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG - tig0019825:139506-139525 Msa1376680:CDS 50.0%
GGTTTGCCAGTAGGTGCATA+TGG - tig0019825:139528-139547 Msa1376680:CDS 50.0%
TTGCCAGTAGGTGCATATGG+AGG - tig0019825:139531-139550 Msa1376680:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG + tig0019825:139537-139556 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG - tig0019825:139535-139554 Msa1376680:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG - tig0019825:139563-139582 Msa1376680:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG - tig0019825:139608-139627 Msa1376680:CDS 50.0%
ATGCCTGCAGTCATTGCCAA+AGG + tig0019825:139627-139646 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG - tig0019825:139654-139673 Msa1376680:intron 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG - tig0019825:139726-139745 Msa1376680:intron 50.0%
AAGGCAGGGCATGCAATATG+TGG - tig0019825:139741-139760 Msa1376680:CDS 50.0%
CAGGGCATGCAATATGTGGT+GGG - tig0019825:139745-139764 Msa1376680:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG - tig0019825:139898-139917 Msa1376680:intron 50.0%
AACCCAGCCTCAAACTGTGA+AGG + tig0019825:139903-139922 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG - tig0019825:139967-139986 Msa1376680:intron 50.0%
AGAAGCTTTCGCAGCTGCAA+AGG - tig0019825:138563-138582 Msa1376680:exon 50.0%
AAGACAAGGTGCACCAAAGC+TGG + tig0019825:138971-138990 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG + tig0019825:139100-139119 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG + tig0019825:139199-139218 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG + tig0019825:139210-139229 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG + tig0019825:139218-139237 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG + tig0019825:139238-139257 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG + tig0019825:139250-139269 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG + tig0019825:139251-139270 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG - tig0019825:139321-139340 Msa1376680:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG + tig0019825:139388-139407 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG + tig0019825:139403-139422 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG - tig0019825:139444-139463 Msa1376680:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG + tig0019825:139452-139471 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG - tig0019825:139504-139523 Msa1376680:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG - tig0019825:139505-139524 Msa1376680:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG - tig0019825:139506-139525 Msa1376680:CDS 50.0%
GGTTTGCCAGTAGGTGCATA+TGG - tig0019825:139528-139547 Msa1376680:CDS 50.0%
TTGCCAGTAGGTGCATATGG+AGG - tig0019825:139531-139550 Msa1376680:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG + tig0019825:139537-139556 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG - tig0019825:139535-139554 Msa1376680:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG - tig0019825:139563-139582 Msa1376680:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG - tig0019825:139608-139627 Msa1376680:CDS 50.0%
ATGCCTGCAGTCATTGCCAA+AGG + tig0019825:139627-139646 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG - tig0019825:139654-139673 Msa1376680:intron 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG - tig0019825:139726-139745 Msa1376680:intron 50.0%
AAGGCAGGGCATGCAATATG+TGG - tig0019825:139741-139760 Msa1376680:CDS 50.0%
CAGGGCATGCAATATGTGGT+GGG - tig0019825:139745-139764 Msa1376680:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG - tig0019825:139898-139917 Msa1376680:intron 50.0%
AACCCAGCCTCAAACTGTGA+AGG + tig0019825:139903-139922 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG - tig0019825:139967-139986 Msa1376680:intron 50.0%
! ATGGCTGCTTCGGGTATTGC+AGG - tig0019825:138411-138430 Msa1376680:three_prime_UTR 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG - tig0019825:138412-138431 Msa1376680:three_prime_UTR 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG + tig0019825:138524-138543 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG + tig0019825:138687-138706 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG + tig0019825:138754-138773 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG - tig0019825:138752-138771 Msa1376680:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG - tig0019825:138762-138781 Msa1376680:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG - tig0019825:139059-139078 Msa1376680:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG - tig0019825:139060-139079 Msa1376680:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG + tig0019825:139064-139083 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG + tig0019825:139196-139215 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG + tig0019825:139200-139219 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG - tig0019825:139198-139217 Msa1376680:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG + tig0019825:139217-139236 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG + tig0019825:139219-139238 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG + tig0019825:139241-139260 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG - tig0019825:139507-139526 Msa1376680:CDS 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG - tig0019825:139519-139538 Msa1376680:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG - tig0019825:139586-139605 Msa1376680:CDS 55.0%
AACGTCCCAGCCTGGTACAT+AGG + tig0019825:139594-139613 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG - tig0019825:139744-139763 Msa1376680:CDS 55.0%
! GCACCTTCACAGTTTGAGGC+TGG - tig0019825:139897-139916 Msa1376680:intron 55.0%
GACCATTGCTGCTGCTGAGA+AGG - tig0019825:139959-139978 Msa1376680:intron 55.0%
GACCTTCTCAGCAGCAGCAA+TGG + tig0019825:139964-139983 None:intergenic 55.0%
! ATGGCTGCTTCGGGTATTGC+AGG - tig0019825:138411-138430 Msa1376680:three_prime_UTR 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG - tig0019825:138412-138431 Msa1376680:three_prime_UTR 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG + tig0019825:138524-138543 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG + tig0019825:138687-138706 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG + tig0019825:138754-138773 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG - tig0019825:138752-138771 Msa1376680:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG - tig0019825:138762-138781 Msa1376680:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG - tig0019825:139059-139078 Msa1376680:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG - tig0019825:139060-139079 Msa1376680:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG + tig0019825:139064-139083 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG + tig0019825:139196-139215 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG + tig0019825:139200-139219 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG - tig0019825:139198-139217 Msa1376680:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG + tig0019825:139217-139236 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG + tig0019825:139219-139238 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG + tig0019825:139241-139260 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG - tig0019825:139507-139526 Msa1376680:CDS 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG - tig0019825:139519-139538 Msa1376680:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG - tig0019825:139586-139605 Msa1376680:CDS 55.0%
AACGTCCCAGCCTGGTACAT+AGG + tig0019825:139594-139613 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG - tig0019825:139744-139763 Msa1376680:CDS 55.0%
! GCACCTTCACAGTTTGAGGC+TGG - tig0019825:139897-139916 Msa1376680:intron 55.0%
GACCATTGCTGCTGCTGAGA+AGG - tig0019825:139959-139978 Msa1376680:intron 55.0%
GACCTTCTCAGCAGCAGCAA+TGG + tig0019825:139964-139983 None:intergenic 55.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG + tig0019825:138520-138539 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG - tig0019825:138751-138770 Msa1376680:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG + tig0019825:139092-139111 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG - tig0019825:139090-139109 Msa1376680:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG + tig0019825:139095-139114 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG - tig0019825:139180-139199 Msa1376680:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG - tig0019825:139581-139600 Msa1376680:CDS 60.0%
GCCTGGTACATAGGTCCAGC+CGG + tig0019825:139585-139604 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG - tig0019825:139585-139604 Msa1376680:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG - tig0019825:139597-139616 Msa1376680:CDS 60.0%
ACCAGGCTGGGACGTTGAGT+GGG - tig0019825:139598-139617 Msa1376680:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG - tig0019825:139911-139930 Msa1376680:intron 60.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG + tig0019825:138520-138539 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG - tig0019825:138751-138770 Msa1376680:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG + tig0019825:139092-139111 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG - tig0019825:139090-139109 Msa1376680:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG + tig0019825:139095-139114 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG - tig0019825:139180-139199 Msa1376680:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG - tig0019825:139581-139600 Msa1376680:CDS 60.0%
GCCTGGTACATAGGTCCAGC+CGG + tig0019825:139585-139604 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG - tig0019825:139585-139604 Msa1376680:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG - tig0019825:139597-139616 Msa1376680:CDS 60.0%
ACCAGGCTGGGACGTTGAGT+GGG - tig0019825:139598-139617 Msa1376680:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG - tig0019825:139911-139930 Msa1376680:intron 60.0%
CATAGGTCCAGCCGGAGCCA+CGG + tig0019825:139577-139596 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG + tig0019825:139602-139621 None:intergenic 65.0%
CATAGGTCCAGCCGGAGCCA+CGG + tig0019825:139577-139596 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG + tig0019825:139602-139621 None:intergenic 65.0%
! GGTGCTGGGCTTCTGGTCGG+TGG + tig0019825:138517-138536 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG - tig0019825:139567-139586 Msa1376680:CDS 70.0%
! GGTGCTGGGCTTCTGGTCGG+TGG + tig0019825:138517-138536 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG - tig0019825:139567-139586 Msa1376680:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0019825 gene 138343 140237 138343 ID=Msa1376680;Name=Msa1376680
tig0019825 mRNA 138343 140237 138343 ID=Msa1376680-mRNA-1;Parent=Msa1376680;Name=Msa1376680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=68|1|1|1|1|1|3|239|471
tig0019825 exon 138343 139649 138343 ID=Msa1376680-mRNA-1:exon:5219;Parent=Msa1376680-mRNA-1
tig0019825 exon 139732 139905 139732 ID=Msa1376680-mRNA-1:exon:5218;Parent=Msa1376680-mRNA-1
tig0019825 exon 139996 140237 139996 ID=Msa1376680-mRNA-1:exon:5217;Parent=Msa1376680-mRNA-1
tig0019825 five_prime_UTR 140170 140237 140170 ID=Msa1376680-mRNA-1:five_prime_utr;Parent=Msa1376680-mRNA-1
tig0019825 CDS 139996 140169 139996 ID=Msa1376680-mRNA-1:cds;Parent=Msa1376680-mRNA-1
tig0019825 CDS 139732 139905 139732 ID=Msa1376680-mRNA-1:cds;Parent=Msa1376680-mRNA-1
tig0019825 CDS 138582 139649 138582 ID=Msa1376680-mRNA-1:cds;Parent=Msa1376680-mRNA-1
tig0019825 three_prime_UTR 138343 138581 138343 ID=Msa1376680-mRNA-1:three_prime_utr;Parent=Msa1376680-mRNA-1
Gene Sequence

>Msa1376680

ATGGCTGCTTCGGGTATTGCAGGGATTACCCTTCTCAATTGCTTCTCTTCTTCTTCTTCTTCATCAGCGAGATGCCGAACTCGTTCTTTGACTATGGCTGTTTCCACCGACCAGAAGCCCAGCACCGAAAAACTCACTCTTCGCAAATCTGAAGAAGCTTTCGCAGCTGCAAAGGAATTGATGCCTGGAGGTGTGAACTCTCCTGTTCGTGCTTTCAAATCAGTTGGTGGACAACCAATTATCATTGATTCCGTCAAAGGTGCTCGCATGTGGGACATTGATGGCAACCAATACATTGACTATGTTGGTTCTTGGGGTCCTGCAATTATTGGTCACGCTGATGATCAGGTACTCTCCGCTCTTGCTGAGACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTTCTTGAAAACACTCTAGCTGAGATGGTTATCTCTGCTGTTCCCAGCATTGAAATGGTCAGATTTGTCAATTCCGGCACAGAAGCATGCATGGGTGCACTCCGCCTTGCCCGTGCTTATACCGGCAAAGAGAAGATCATCAAGTTTGAGGGATGTTATCACGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCCTAGGACTTCCTGATTCCCCTGGTGTTCCTAAAGCTGCCACCAATGAAACCCTTACAGCCCCCTTCAATGACTTTGCTGCTGTTGAGAAGATCTTTGAAGCCAACAAAGGAGAGATAGCCGTAGTCTTCCTCGAACCTGTTGTTGGAAATTCCGGTTTCATTACTCCTAAACCTGATTTTCTTAGTTCCTTGCGCAAAATCACCAAGGAGAACAATGCCCTTCTCGTGTTTGATGAAGTTATGACTGGATTCCGTTTGTCGTATGGAGGTGCTCAACAATACTTTGGCATAACTCCTGATATAACAACTCTGGGGAAGATCATTGGAGGGGGTTTGCCAGTAGGTGCATATGGAGGTAGGAGAGATATTATGGAGACCGTGGCTCCGGCTGGACCTATGTACCAGGCTGGGACGTTGAGTGGGAATCCTTTGGCAATGACTGCAGGCATAGAAACTCTGAAGCGTATTAAGGAGCCAGGAACTTATGAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGCATTGTTGAAGCTGGTAAGAAGGCAGGGCATGCAATATGTGGTGGGCATATAAATGGGATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGTACAATTTCACAGATGCAAAAAAGAGTGACACTGCCAAGTTTGCTAAGTTCTTCTGGGGTATGTTAGCAGAAGGTGTCTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACCAGCTTGGCACATACTTCTGATGACATCAAGAAGACCATTGCTGCTGCTGAGAAGGTCTTTAGGGAGATCTGA

Protein sequence

>Msa1376680

MAASGIAGITLLNCFSSSSSSSARCRTRSLTMAVSTDQKPSTEKLTLRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLSALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEANKGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQQYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIETLKRIKEPGTYEYLDKITGELVQGIVEAGKKAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI*