AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1118760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118760 MtrunA17_Chr7g0253361 99.539 217 1 0 1 217 1 217 1.82e-162 447
Msa1118760 MtrunA17_Chr1g0151811 38.645 251 106 8 12 217 46 293 4.45e-44 149
Msa1118760 MtrunA17_Chr8g0369051 38.528 231 108 9 17 217 27 253 5.43e-32 116
Msa1118760 MtrunA17_Chr6g0484191 27.442 215 113 4 20 195 17 227 8.71e-15 70.9
Msa1118760 MtrunA17_Chr5g0423331 31.959 97 60 1 111 201 123 219 1.36e-11 62.0
Msa1118760 MtrunA17_Chr6g0451821 28.169 213 112 8 20 201 41 243 5.69e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118760 AT1G55340.1 55.856 222 71 9 4 217 3 205 1.52e-69 211
Msa1118760 AT1G55340.2 54.545 220 67 7 4 217 3 195 2.33e-67 206
Msa1118760 AT3G03880.1 54.028 211 70 7 13 217 4 193 2.74e-63 195
Msa1118760 AT4G20300.2 43.949 157 66 5 83 217 196 352 8.97e-30 113
Msa1118760 AT4G20300.1 43.885 139 58 4 83 201 196 334 5.70e-26 103

Find 116 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGAATCTAAACTATTT+TGG 0.102004 7_3:+67550820 Msa1118760:three_prime_UTR
TAAGCTTCTTTGGATGATTT+TGG 0.165257 7_3:-67550380 None:intergenic
AATGGGATTGAACTCTTTAT+AGG 0.166067 7_3:-67551822 None:intergenic
ATACTCTTCAGTTGAAATTA+TGG 0.213584 7_3:-67551431 None:intergenic
TCATGTTTATCATTTCAAAA+TGG 0.220145 7_3:-67551918 None:intergenic
TGAGGCATAGATCTTAAATT+TGG 0.232864 7_3:+67549191 Msa1118760:five_prime_UTR
ATGATATACCAAAGTCTTAA+AGG 0.232922 7_3:-67549221 None:intergenic
AACTTACCAATAAGCTTCTT+TGG 0.237998 7_3:-67550390 None:intergenic
CTGTTGCCTTACATGCTCTT+TGG 0.238559 7_3:-67549347 None:intergenic
AATCATCCAAAGAAGCTTAT+TGG 0.258024 7_3:+67550384 Msa1118760:CDS
GGCCATGAATTGTTTGGATT+TGG 0.268749 7_3:-67551993 None:intergenic
CTTCATTGATTTGATTGAAA+TGG 0.283720 7_3:-67550955 None:intergenic
ATCAGAAGAAAGCTTAATTC+TGG 0.302031 7_3:+67549465 Msa1118760:CDS
CATTTCAAAATGGGAGAATC+AGG 0.307895 7_3:-67551908 None:intergenic
ATTGAATCTTTCAACTTTCC+CGG 0.313674 7_3:+67552135 Msa1118760:three_prime_UTR
GGATTCAGAGAAGAAGAAAA+AGG 0.333201 7_3:-67549017 None:intergenic
AGGAAGCTTACAACCTTTCA+TGG 0.340391 7_3:-67550338 None:intergenic
GTCAAGAGAGATATGAAGTT+AGG 0.367836 7_3:+67550572 Msa1118760:CDS
TTTGGATGTAATAAATCATA+TGG 0.369892 7_3:+67551292 Msa1118760:three_prime_UTR
GCCATGAATTGTTTGGATTT+GGG 0.370840 7_3:-67551992 None:intergenic
AAGAGATCTCGATAATAAAA+TGG 0.374421 7_3:+67551534 Msa1118760:three_prime_UTR
CATGTTTATCATTTCAAAAT+GGG 0.379197 7_3:-67551917 None:intergenic
AAATGATAAACATGATGATC+TGG 0.381344 7_3:+67551926 Msa1118760:three_prime_UTR
AACAACCTTGTGAGACGATT+AGG 0.386278 7_3:-67549555 None:intergenic
TCTTCTTGCAGTGGGGAAAC+AGG 0.395699 7_3:+67549379 Msa1118760:CDS
TATGCAAATATTTGAGAGGT+TGG 0.398405 7_3:+67550784 Msa1118760:three_prime_UTR
TGAAGTTTCAATTTCAAAAG+AGG 0.407450 7_3:+67551191 Msa1118760:three_prime_UTR
TGCAATGGCCATGAATTGTT+TGG 0.413077 7_3:-67551999 None:intergenic
CGGATTTCAACTAGGCTTAA+CGG 0.415814 7_3:+67549435 Msa1118760:CDS
TCAAGAGAGATATGAAGTTA+GGG 0.417350 7_3:+67550573 Msa1118760:CDS
TGTTTACAGTTGGTAAGTCC+TGG 0.420464 7_3:+67550529 Msa1118760:intron
CCCATAGCCTTCAATCCTCT+TGG 0.424567 7_3:-67550723 None:intergenic
AAACCCTCTTTAATTGCAAA+AGG 0.427755 7_3:-67551848 None:intergenic
GAGGAACCAAAGAGCATGTA+AGG 0.432240 7_3:+67549341 Msa1118760:CDS
ACCCAAATCCAAACAATTCA+TGG 0.437111 7_3:+67551991 Msa1118760:three_prime_UTR
AAAACAAAACTTGGTGGGAA+TGG 0.441648 7_3:-67551080 None:intergenic
GAAGCAACCCTTTAAGACTT+TGG 0.451381 7_3:+67549213 Msa1118760:five_prime_UTR
GGAGTGGAGAATCATCGTTC+TGG 0.453670 7_3:+67549486 Msa1118760:CDS
TTCAAAACAATTAAAGAGAT+GGG 0.458170 7_3:+67551337 Msa1118760:three_prime_UTR
GAAAAGAAAATATGATGAAG+AGG 0.458502 7_3:-67551158 None:intergenic
GGCCGGAGATAACAGAAAAT+CGG 0.460576 7_3:+67550156 Msa1118760:CDS
TGATATACCAAAGTCTTAAA+GGG 0.462098 7_3:-67549220 None:intergenic
ATTGAATCTTTCAACTTTCG+CGG 0.463660 7_3:+67552062 Msa1118760:three_prime_UTR
GAAGAACTGAAATGTACCTT+TGG 0.470027 7_3:+67551274 Msa1118760:three_prime_UTR
CCAAGAGGATTGAAGGCTAT+GGG 0.481069 7_3:+67550723 Msa1118760:CDS
AAATCTGCAGTCAAATCATA+TGG 0.482347 7_3:-67551954 None:intergenic
CTTCAAAACAATTAAAGAGA+TGG 0.484827 7_3:+67551336 Msa1118760:three_prime_UTR
GCAGAGGCCAAGAGGATTGA+AGG 0.486507 7_3:+67550716 Msa1118760:intron
GATTTGGGTTCCCTACTGTC+AGG 0.486865 7_3:-67551977 None:intergenic
CTTTCTTCTAGTTAAGCACT+AGG 0.491872 7_3:+67551508 Msa1118760:three_prime_UTR
TCTTTCAACTTTCGCGGCCA+CGG 0.492000 7_3:+67552068 Msa1118760:three_prime_UTR
TTGATTTGATTGAAATGGAT+CGG 0.493315 7_3:-67550950 None:intergenic
GCCAAGAGGATTGAAGGCTA+TGG 0.494932 7_3:+67550722 Msa1118760:CDS
AACATCGCAAGTGCCTTTAC+CGG 0.498467 7_3:-67550233 None:intergenic
AAGATCCTCGGATTTCAACT+AGG 0.502257 7_3:+67549427 Msa1118760:CDS
ACCAGAGTTCTTCTTGCAGT+GGG 0.504536 7_3:+67549371 Msa1118760:CDS
AATTTCAACTGAAGAGTATG+AGG 0.505907 7_3:+67551435 Msa1118760:three_prime_UTR
CCCCACTGCAAGAAGAACTC+TGG 0.514893 7_3:-67549372 None:intergenic
TCAGCAGAGGACACCGGTAA+AGG 0.516208 7_3:+67550220 Msa1118760:CDS
GGAAGCGTTTGAGATGTGTA+AGG 0.516835 7_3:+67549400 Msa1118760:CDS
GGAGAAGAAAAGTAACAAGA+AGG 0.520874 7_3:+67550594 Msa1118760:CDS
GAGAGAGTAATGTAAAGCTT+AGG 0.521687 7_3:-67550286 None:intergenic
ATTGAAGGCTATGGGGAGTG+TGG 0.522393 7_3:+67550731 Msa1118760:CDS
GAAATAAAACAAAACTTGGT+GGG 0.526810 7_3:-67551085 None:intergenic
TGGATATATTTGCCTGCTTG+AGG 0.528148 7_3:-67551411 None:intergenic
GATAGAAATAAAACAAAACT+TGG 0.528644 7_3:-67551089 None:intergenic
GGCACTTGCGATGTTATCAA+TGG 0.530662 7_3:+67550241 Msa1118760:CDS
ACATTTCAGTTCTTCAATGT+CGG 0.531555 7_3:-67551266 None:intergenic
CTGCAGATTTCCTGACAGTA+GGG 0.531993 7_3:+67551967 Msa1118760:three_prime_UTR
TAACAGAAAATCGGCATCAC+CGG 0.532579 7_3:+67550165 Msa1118760:CDS
ATATCAGTCAACCATGCTCC+AGG 0.532665 7_3:-67550547 None:intergenic
AAAACTGAAACAGAGTTTGA+GGG 0.540597 7_3:-67548887 None:intergenic
AAAATCGGCATCACCGGAGA+AGG 0.542456 7_3:+67550171 Msa1118760:CDS
TTGGTATGCAGGAATTCCGA+TGG 0.546689 7_3:+67550115 Msa1118760:intron
CAATTAAAGAGGGTTTATTG+AGG 0.547313 7_3:+67551855 Msa1118760:three_prime_UTR
TAGTATCGATCTTCCTTCTC+CGG 0.549815 7_3:-67550184 None:intergenic
AATTTGTAGCGTCTGTGTCA+CGG 0.551647 7_3:-67552115 None:intergenic
AAAAGAAAATATGATGAAGA+GGG 0.560105 7_3:-67551157 None:intergenic
AGAGGGTTGCTGAAATATGA+AGG 0.561071 7_3:-67551140 None:intergenic
ACTATTCTACGACCGGCGGC+CGG 0.561495 7_3:+67550139 Msa1118760:CDS
ACTGCAGATTTCCTGACAGT+AGG 0.561923 7_3:+67551966 Msa1118760:three_prime_UTR
GATTAATGTGAGCCTCAAGC+AGG 0.562495 7_3:+67551399 Msa1118760:three_prime_UTR
AACCAGAGTTCTTCTTGCAG+TGG 0.563420 7_3:+67549370 Msa1118760:CDS
AATTTGTAGCTTCTGCCTCA+CGG 0.564938 7_3:-67552042 None:intergenic
CGATGGAACTATTCTACGAC+CGG 0.568292 7_3:+67550132 Msa1118760:CDS
AGTTGGTAAGTCCTGGAGCA+TGG 0.569217 7_3:+67550536 Msa1118760:intron
TTTGGGAAGATGGAAGATGA+TGG 0.573120 7_3:+67550838 Msa1118760:three_prime_UTR
TTTCTGTTATCTCCGGCCGC+CGG 0.574206 7_3:-67550151 None:intergenic
AATGATAAACATGATGATCT+GGG 0.575220 7_3:+67551927 Msa1118760:three_prime_UTR
AGCGTCTGTGTCACGGCTTG+CGG 0.577860 7_3:-67552108 None:intergenic
AGAAATAAAACAAAACTTGG+TGG 0.578938 7_3:-67551086 None:intergenic
ATATGATTTATTACATCCAA+AGG 0.579375 7_3:-67551290 None:intergenic
ATTTCAAAATGGGAGAATCA+GGG 0.581880 7_3:-67551907 None:intergenic
GTATGAGGCTAAATAAAGCA+TGG 0.599364 7_3:+67551450 Msa1118760:three_prime_UTR
GTGTAAGGGTGAAAGATCCT+CGG 0.610227 7_3:+67549415 Msa1118760:CDS
TAGACAAAGTAGCTTACATG+TGG 0.613840 7_3:+67551676 Msa1118760:three_prime_UTR
TTATTATGCAAATATTTGAG+AGG 0.616149 7_3:+67550780 Msa1118760:three_prime_UTR
AAGAAAGCTTAATTCTGGAG+TGG 0.623077 7_3:+67549470 Msa1118760:CDS
GTCACTGAACTTAGACCATG+TGG 0.624176 7_3:+67551575 Msa1118760:three_prime_UTR
CGGTCGTAGAATAGTTCCAT+CGG 0.626224 7_3:-67550131 None:intergenic
TAGAAATGGAGACAGAAGAG+AGG 0.628747 7_3:+67549322 Msa1118760:intron
AGATCGATACTACACGACGA+GGG 0.631631 7_3:+67550195 Msa1118760:CDS
TCAAAACAATTAAAGAGATG+GGG 0.635459 7_3:+67551338 Msa1118760:three_prime_UTR
GCTAAATAAAGCATGGATCG+TGG 0.641350 7_3:+67551457 Msa1118760:three_prime_UTR
AGTCTAAAGCAAGTTTGCAA+TGG 0.643883 7_3:-67552014 None:intergenic
GATCGATACTACACGACGAG+GGG 0.647579 7_3:+67550196 Msa1118760:CDS
GAAGCGTTTGAGATGTGTAA+GGG 0.650307 7_3:+67549401 Msa1118760:CDS
CAAGAGGATTGAAGGCTATG+GGG 0.656812 7_3:+67550724 Msa1118760:CDS
CCAGAGTTCTTCTTGCAGTG+GGG 0.679245 7_3:+67549372 Msa1118760:CDS
AACAACCTAATCGTCTCACA+AGG 0.681018 7_3:+67549550 Msa1118760:CDS
TGGAACTATTCTACGACCGG+CGG 0.694045 7_3:+67550135 Msa1118760:CDS
AAGATCGATACTACACGACG+AGG 0.699452 7_3:+67550194 Msa1118760:CDS
TTAAGCCTAGTTGAAATCCG+AGG 0.705168 7_3:-67549432 None:intergenic
ATTTCAACTAGGCTTAACGG+TGG 0.734742 7_3:+67549438 Msa1118760:CDS
TATAAATTTAGACACCCACA+TGG 0.739600 7_3:-67551590 None:intergenic
TCACTGAACTTAGACCATGT+GGG 0.743602 7_3:+67551576 Msa1118760:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATTTAAAGAAAAAA+TGG + chr7_3:67549745-67549764 Msa1118760:intron 10.0%
!!! TTTTTATGTTGTTTTTATTA+TGG + chr7_3:67550435-67550454 Msa1118760:intron 10.0%
!! ATTAAGAGATAAAATAAAAA+AGG - chr7_3:67550659-67550678 None:intergenic 10.0%
!! CTTACAATGATAAAAAAAAT+TGG - chr7_3:67549041-67549060 None:intergenic 15.0%
!!! AAGAAAAAATGGTTTTTTTT+TGG + chr7_3:67549756-67549775 Msa1118760:intron 15.0%
!!! AATTTTTATGTGATTTTGAT+TGG + chr7_3:67550087-67550106 Msa1118760:intron 15.0%
!!! TTGTTTTTATTATGGTTAAT+TGG + chr7_3:67550443-67550462 Msa1118760:intron 15.0%
!!! TGTTTTTATTATGGTTAATT+GGG + chr7_3:67550444-67550463 Msa1118760:intron 15.0%
!!! TATGTTTTTTGTTGTAGAAA+TGG + chr7_3:67549308-67549327 Msa1118760:intron 20.0%
!! CTTTAAATCAAAATCAAACA+AGG - chr7_3:67549739-67549758 None:intergenic 20.0%
!! AATACAAGTTTATATCATCT+GGG - chr7_3:67549978-67549997 None:intergenic 20.0%
!! TTATTATGCAAATATTTGAG+AGG + chr7_3:67550780-67550799 Msa1118760:three_prime_UTR 20.0%
!!! ACAAAGAATCTAAACTATTT+TGG + chr7_3:67550820-67550839 Msa1118760:three_prime_UTR 20.0%
!!! CAAAGAATCTAAACTATTTT+GGG + chr7_3:67550821-67550840 Msa1118760:three_prime_UTR 20.0%
!!! ATCTCTCTTATTTTACTTTA+TGG + chr7_3:67551027-67551046 Msa1118760:three_prime_UTR 20.0%
!! GATAGAAATAAAACAAAACT+TGG - chr7_3:67551092-67551111 None:intergenic 20.0%
!! AAAAGAAAATATGATGAAGA+GGG - chr7_3:67551160-67551179 None:intergenic 20.0%
!! ATATGATTTATTACATCCAA+AGG - chr7_3:67551293-67551312 None:intergenic 20.0%
!! TTTGGATGTAATAAATCATA+TGG + chr7_3:67551292-67551311 Msa1118760:three_prime_UTR 20.0%
!! TTCAAAACAATTAAAGAGAT+GGG + chr7_3:67551337-67551356 Msa1118760:three_prime_UTR 20.0%
!!! TTAATTTTGGATTTATGTTC+TGG + chr7_3:67551776-67551795 Msa1118760:three_prime_UTR 20.0%
!! TTAATTGCAAAAGGAAAAAT+GGG - chr7_3:67551842-67551861 None:intergenic 20.0%
!! TTTAATTGCAAAAGGAAAAA+TGG - chr7_3:67551843-67551862 None:intergenic 20.0%
!! CATGTTTATCATTTCAAAAT+GGG - chr7_3:67551920-67551939 None:intergenic 20.0%
!! TCATGTTTATCATTTCAAAA+TGG - chr7_3:67551921-67551940 None:intergenic 20.0%
!!! GCAAAAAAAACTGTTTTTTG+AGG + chr7_3:67549173-67549192 Msa1118760:five_prime_UTR 25.0%
! TGATATACCAAAGTCTTAAA+GGG - chr7_3:67549223-67549242 None:intergenic 25.0%
! ATGATATACCAAAGTCTTAA+AGG - chr7_3:67549224-67549243 None:intergenic 25.0%
! CCACAATAGATTTAGATAAA+GGG - chr7_3:67549279-67549298 None:intergenic 25.0%
! ACCACAATAGATTTAGATAA+AGG - chr7_3:67549280-67549299 None:intergenic 25.0%
! TTGAAAACTACCATAACAAA+TGG + chr7_3:67549576-67549595 Msa1118760:intron 25.0%
!!! TTTTGGTTTGTGAAAAATGA+TGG + chr7_3:67549674-67549693 Msa1118760:intron 25.0%
!!! GTAATGATGTTGTTTTCATT+TGG + chr7_3:67549802-67549821 Msa1118760:intron 25.0%
!!! TTTTCATTTGGTTGGTTAAT+GGG + chr7_3:67549814-67549833 Msa1118760:intron 25.0%
! GAATACAAGTTTATATCATC+TGG - chr7_3:67549979-67549998 None:intergenic 25.0%
!!! TTGATGGATTTTTTTTCAGA+AGG + chr7_3:67550005-67550024 Msa1118760:intron 25.0%
!!! TGATGGATTTTTTTTCAGAA+GGG + chr7_3:67550006-67550025 Msa1118760:intron 25.0%
!!! ATTTTTTTTCAGAAGGGTAT+TGG + chr7_3:67550012-67550031 Msa1118760:intron 25.0%
! TTATTATGGTTAATTGGGTT+TGG + chr7_3:67550449-67550468 Msa1118760:intron 25.0%
!! TTGATTTGATTGAAATGGAT+CGG - chr7_3:67550953-67550972 None:intergenic 25.0%
!!! CTTCATTGATTTGATTGAAA+TGG - chr7_3:67550958-67550977 None:intergenic 25.0%
! GAAATAAAACAAAACTTGGT+GGG - chr7_3:67551088-67551107 None:intergenic 25.0%
! AGAAATAAAACAAAACTTGG+TGG - chr7_3:67551089-67551108 None:intergenic 25.0%
! GAAAAGAAAATATGATGAAG+AGG - chr7_3:67551161-67551180 None:intergenic 25.0%
! TGAAGTTTCAATTTCAAAAG+AGG + chr7_3:67551191-67551210 Msa1118760:three_prime_UTR 25.0%
! CTTCAAAACAATTAAAGAGA+TGG + chr7_3:67551336-67551355 Msa1118760:three_prime_UTR 25.0%
! TCAAAACAATTAAAGAGATG+GGG + chr7_3:67551338-67551357 Msa1118760:three_prime_UTR 25.0%
! TGAAAAAACCAATTAAGGAA+AGG + chr7_3:67551363-67551382 Msa1118760:three_prime_UTR 25.0%
!! CATATTTTCCTTTCCTTAAT+TGG - chr7_3:67551374-67551393 None:intergenic 25.0%
! ATACTCTTCAGTTGAAATTA+TGG - chr7_3:67551434-67551453 None:intergenic 25.0%
! AAGAGATCTCGATAATAAAA+TGG + chr7_3:67551534-67551553 Msa1118760:three_prime_UTR 25.0%
! CTTAAGCTAAAAATAGCAAT+TGG - chr7_3:67551648-67551667 None:intergenic 25.0%
!!! CAATTGCTATTTTTAGCTTA+AGG + chr7_3:67551646-67551665 Msa1118760:three_prime_UTR 25.0%
!! TTTTCCTTTTGCAATTAAAG+AGG + chr7_3:67551844-67551863 Msa1118760:three_prime_UTR 25.0%
!! TTTCCTTTTGCAATTAAAGA+GGG + chr7_3:67551845-67551864 Msa1118760:three_prime_UTR 25.0%
! AAATGATAAACATGATGATC+TGG + chr7_3:67551926-67551945 Msa1118760:three_prime_UTR 25.0%
! AATGATAAACATGATGATCT+GGG + chr7_3:67551927-67551946 Msa1118760:three_prime_UTR 25.0%
AAAACTGAAACAGAGTTTGA+GGG - chr7_3:67548890-67548909 None:intergenic 30.0%
AAAAACTGAAACAGAGTTTG+AGG - chr7_3:67548891-67548910 None:intergenic 30.0%
TGAGGCATAGATCTTAAATT+TGG + chr7_3:67549191-67549210 Msa1118760:five_prime_UTR 30.0%
CCCTTTATCTAAATCTATTG+TGG + chr7_3:67549276-67549295 Msa1118760:intron 30.0%
ATCAGAAGAAAGCTTAATTC+TGG + chr7_3:67549465-67549484 Msa1118760:CDS 30.0%
AGATGAAGATGAAGATAAAG+AGG - chr7_3:67549615-67549634 None:intergenic 30.0%
! TCATCTTATTCCTTCCTTTT+TGG + chr7_3:67549629-67549648 Msa1118760:intron 30.0%
!!! AAATCCAGTTTTTTTCTCAG+AGG - chr7_3:67549657-67549676 None:intergenic 30.0%
! CTGAGAAAAAAACTGGATTT+TGG + chr7_3:67549657-67549676 Msa1118760:intron 30.0%
! TTGTGAAAAATGATGGTGTT+TGG + chr7_3:67549681-67549700 Msa1118760:intron 30.0%
!!! TGATGTTGTTTTCATTTGGT+TGG + chr7_3:67549806-67549825 Msa1118760:intron 30.0%
!! GTTTTCATTTGGTTGGTTAA+TGG + chr7_3:67549813-67549832 Msa1118760:intron 30.0%
! TTTCATTTGGTTGGTTAATG+GGG + chr7_3:67549815-67549834 Msa1118760:intron 30.0%
TGAAGATAAGCATAAAAGAG+AGG + chr7_3:67549849-67549868 Msa1118760:intron 30.0%
GAAGATAAGCATAAAAGAGA+GGG + chr7_3:67549850-67549869 Msa1118760:intron 30.0%
ACTTGTATTCTGTTCTTTGA+TGG + chr7_3:67549989-67550008 Msa1118760:intron 30.0%
!!! GTGATTTTGATTGGAAGTTT+TGG + chr7_3:67550096-67550115 Msa1118760:intron 30.0%
! TAAGCTTCTTTGGATGATTT+TGG - chr7_3:67550383-67550402 None:intergenic 30.0%
AATCATCCAAAGAAGCTTAT+TGG + chr7_3:67550384-67550403 Msa1118760:CDS 30.0%
AACTTACCAATAAGCTTCTT+TGG - chr7_3:67550393-67550412 None:intergenic 30.0%
TCAAGAGAGATATGAAGTTA+GGG + chr7_3:67550573-67550592 Msa1118760:CDS 30.0%
AAAAGTAACAAGAAGGTAAG+CGG + chr7_3:67550601-67550620 Msa1118760:intron 30.0%
TATGCAAATATTTGAGAGGT+TGG + chr7_3:67550784-67550803 Msa1118760:three_prime_UTR 30.0%
!! TCTAAACTATTTTGGGAAGA+TGG + chr7_3:67550828-67550847 Msa1118760:three_prime_UTR 30.0%
ACATTTCAGTTCTTCAATGT+CGG - chr7_3:67551269-67551288 None:intergenic 30.0%
GGGTATGAAAAAACCAATTA+AGG + chr7_3:67551358-67551377 Msa1118760:three_prime_UTR 30.0%
! AATTTCAACTGAAGAGTATG+AGG + chr7_3:67551435-67551454 Msa1118760:three_prime_UTR 30.0%
TATAAATTTAGACACCCACA+TGG - chr7_3:67551593-67551612 None:intergenic 30.0%
AATGGGATTGAACTCTTTAT+AGG - chr7_3:67551825-67551844 None:intergenic 30.0%
AAACCCTCTTTAATTGCAAA+AGG - chr7_3:67551851-67551870 None:intergenic 30.0%
CAATTAAAGAGGGTTTATTG+AGG + chr7_3:67551855-67551874 Msa1118760:three_prime_UTR 30.0%
! TTATTGAGGTTTCAGTTTTC+TGG + chr7_3:67551869-67551888 Msa1118760:three_prime_UTR 30.0%
ATTTCAAAATGGGAGAATCA+GGG - chr7_3:67551910-67551929 None:intergenic 30.0%
AAATCTGCAGTCAAATCATA+TGG - chr7_3:67551957-67551976 None:intergenic 30.0%
ATTGAATCTTTCAACTTTCG+CGG + chr7_3:67552062-67552081 Msa1118760:three_prime_UTR 30.0%
ATTGAATCTTTCAACTTTCC+CGG + chr7_3:67552135-67552154 Msa1118760:three_prime_UTR 30.0%
GGATTCAGAGAAGAAGAAAA+AGG - chr7_3:67549020-67549039 None:intergenic 35.0%
GAAGAAGATGAAGAAGAAGA+AGG - chr7_3:67549064-67549083 None:intergenic 35.0%
! AAGAAAGCTTAATTCTGGAG+TGG + chr7_3:67549470-67549489 Msa1118760:CDS 35.0%
! CTGAGAAGATCCATTTGTTA+TGG - chr7_3:67549589-67549608 None:intergenic 35.0%
! TTTTCTCAGAGGAACCAAAA+AGG - chr7_3:67549646-67549665 None:intergenic 35.0%
GAGAAGAAAAAGCTCTTGTT+TGG + chr7_3:67550263-67550282 Msa1118760:CDS 35.0%
GAGAGAGTAATGTAAAGCTT+AGG - chr7_3:67550289-67550308 None:intergenic 35.0%
! GAAGATTTTCTTGCCATGAA+AGG + chr7_3:67550325-67550344 Msa1118760:CDS 35.0%
!! ATGATTTTGGCCCTCTTTTT+GGG - chr7_3:67550370-67550389 None:intergenic 35.0%
ATGTTGTCCACATGTTTGTT+TGG + chr7_3:67550502-67550521 Msa1118760:intron 35.0%
ACAAACACCAAACAAACATG+TGG - chr7_3:67550512-67550531 None:intergenic 35.0%
!! GTTTGGTGTTTGTTTACAGT+TGG + chr7_3:67550519-67550538 Msa1118760:intron 35.0%
GTCAAGAGAGATATGAAGTT+AGG + chr7_3:67550572-67550591 Msa1118760:CDS 35.0%
GGAGAAGAAAAGTAACAAGA+AGG + chr7_3:67550594-67550613 Msa1118760:CDS 35.0%
!!! TTTTTGGGTTTTTGATGCAG+AGG + chr7_3:67550700-67550719 Msa1118760:intron 35.0%
! AAAACAAAACTTGGTGGGAA+TGG - chr7_3:67551083-67551102 None:intergenic 35.0%
GAAGAACTGAAATGTACCTT+TGG + chr7_3:67551274-67551293 Msa1118760:three_prime_UTR 35.0%
GTATGAGGCTAAATAAAGCA+TGG + chr7_3:67551450-67551469 Msa1118760:three_prime_UTR 35.0%
! CTTTCTTCTAGTTAAGCACT+AGG + chr7_3:67551508-67551527 Msa1118760:three_prime_UTR 35.0%
TAGACAAAGTAGCTTACATG+TGG + chr7_3:67551676-67551695 Msa1118760:three_prime_UTR 35.0%
!! TTTTGAGAGAAGCTTACATG+TGG + chr7_3:67551711-67551730 Msa1118760:three_prime_UTR 35.0%
CATTTCAAAATGGGAGAATC+AGG - chr7_3:67551911-67551930 None:intergenic 35.0%
ACCCAAATCCAAACAATTCA+TGG + chr7_3:67551991-67552010 Msa1118760:three_prime_UTR 35.0%
GCCATGAATTGTTTGGATTT+GGG - chr7_3:67551995-67552014 None:intergenic 35.0%
! AGTCTAAAGCAAGTTTGCAA+TGG - chr7_3:67552017-67552036 None:intergenic 35.0%
!! GAAGCAACCCTTTAAGACTT+TGG + chr7_3:67549213-67549232 Msa1118760:five_prime_UTR 40.0%
TAGAAATGGAGACAGAAGAG+AGG + chr7_3:67549322-67549341 Msa1118760:intron 40.0%
! GAAGCGTTTGAGATGTGTAA+GGG + chr7_3:67549401-67549420 Msa1118760:CDS 40.0%
AAGATCCTCGGATTTCAACT+AGG + chr7_3:67549427-67549446 Msa1118760:CDS 40.0%
TTAAGCCTAGTTGAAATCCG+AGG - chr7_3:67549435-67549454 None:intergenic 40.0%
CGGATTTCAACTAGGCTTAA+CGG + chr7_3:67549435-67549454 Msa1118760:CDS 40.0%
ATTTCAACTAGGCTTAACGG+TGG + chr7_3:67549438-67549457 Msa1118760:CDS 40.0%
AACAACCTAATCGTCTCACA+AGG + chr7_3:67549550-67549569 Msa1118760:CDS 40.0%
AACAACCTTGTGAGACGATT+AGG - chr7_3:67549558-67549577 None:intergenic 40.0%
! GGTTCCTCTGAGAAAAAAAC+TGG + chr7_3:67549650-67549669 Msa1118760:intron 40.0%
!! GATTGGAAGTTTTGGTATGC+AGG + chr7_3:67550104-67550123 Msa1118760:intron 40.0%
!!! TGCCGATTTTCTGTTATCTC+CGG - chr7_3:67550161-67550180 None:intergenic 40.0%
TAACAGAAAATCGGCATCAC+CGG + chr7_3:67550165-67550184 Msa1118760:CDS 40.0%
!! TAGTATCGATCTTCCTTCTC+CGG - chr7_3:67550187-67550206 None:intergenic 40.0%
AGGAAGCTTACAACCTTTCA+TGG - chr7_3:67550341-67550360 None:intergenic 40.0%
TTCCTCAAAGACCCAAAAAG+AGG + chr7_3:67550356-67550375 Msa1118760:CDS 40.0%
TCCTCAAAGACCCAAAAAGA+GGG + chr7_3:67550357-67550376 Msa1118760:CDS 40.0%
!! GATGATTTTGGCCCTCTTTT+TGG - chr7_3:67550371-67550390 None:intergenic 40.0%
!! TGTTTACAGTTGGTAAGTCC+TGG + chr7_3:67550529-67550548 Msa1118760:intron 40.0%
TTTGGGAAGATGGAAGATGA+TGG + chr7_3:67550838-67550857 Msa1118760:three_prime_UTR 40.0%
AGAGGGTTGCTGAAATATGA+AGG - chr7_3:67551143-67551162 None:intergenic 40.0%
! TTTTTGCAAAGGTGGGTCAT+AGG - chr7_3:67551241-67551260 None:intergenic 40.0%
GACCCACCTTTGCAAAAATT+TGG + chr7_3:67551243-67551262 Msa1118760:three_prime_UTR 40.0%
! GGCCAAATTTTTGCAAAGGT+GGG - chr7_3:67551248-67551267 None:intergenic 40.0%
! TGTCGGCCAAATTTTTGCAA+AGG - chr7_3:67551252-67551271 None:intergenic 40.0%
TGGATATATTTGCCTGCTTG+AGG - chr7_3:67551414-67551433 None:intergenic 40.0%
GCTAAATAAAGCATGGATCG+TGG + chr7_3:67551457-67551476 Msa1118760:three_prime_UTR 40.0%
TCACTGAACTTAGACCATGT+GGG + chr7_3:67551576-67551595 Msa1118760:three_prime_UTR 40.0%
GGCCATGAATTGTTTGGATT+TGG - chr7_3:67551996-67552015 None:intergenic 40.0%
TGCAATGGCCATGAATTGTT+TGG - chr7_3:67552002-67552021 None:intergenic 40.0%
AATTTGTAGCTTCTGCCTCA+CGG - chr7_3:67552045-67552064 None:intergenic 40.0%
!! TCTAAAGCAAGTTTTCACCG+TGG - chr7_3:67552088-67552107 None:intergenic 40.0%
AATTTGTAGCGTCTGTGTCA+CGG - chr7_3:67552118-67552137 None:intergenic 40.0%
! GAGGAACCAAAGAGCATGTA+AGG + chr7_3:67549341-67549360 Msa1118760:CDS 45.0%
CTGTTGCCTTACATGCTCTT+TGG - chr7_3:67549350-67549369 None:intergenic 45.0%
AACCAGAGTTCTTCTTGCAG+TGG + chr7_3:67549370-67549389 Msa1118760:CDS 45.0%
ACCAGAGTTCTTCTTGCAGT+GGG + chr7_3:67549371-67549390 Msa1118760:CDS 45.0%
!! GGAAGCGTTTGAGATGTGTA+AGG + chr7_3:67549400-67549419 Msa1118760:CDS 45.0%
GTGTAAGGGTGAAAGATCCT+CGG + chr7_3:67549415-67549434 Msa1118760:CDS 45.0%
CTCAGAGGAACCAAAAAGGA+AGG - chr7_3:67549642-67549661 None:intergenic 45.0%
TTGGTATGCAGGAATTCCGA+TGG + chr7_3:67550115-67550134 Msa1118760:intron 45.0%
CGGTCGTAGAATAGTTCCAT+CGG - chr7_3:67550134-67550153 None:intergenic 45.0%
CGATGGAACTATTCTACGAC+CGG + chr7_3:67550132-67550151 Msa1118760:CDS 45.0%
GGCCGGAGATAACAGAAAAT+CGG + chr7_3:67550156-67550175 Msa1118760:CDS 45.0%
AAGATCGATACTACACGACG+AGG + chr7_3:67550194-67550213 Msa1118760:CDS 45.0%
AGATCGATACTACACGACGA+GGG + chr7_3:67550195-67550214 Msa1118760:CDS 45.0%
AACATCGCAAGTGCCTTTAC+CGG - chr7_3:67550236-67550255 None:intergenic 45.0%
GGCACTTGCGATGTTATCAA+TGG + chr7_3:67550241-67550260 Msa1118760:CDS 45.0%
ATATCAGTCAACCATGCTCC+AGG - chr7_3:67550550-67550569 None:intergenic 45.0%
ACAAGAAGGTAAGCGGTTGT+TGG + chr7_3:67550608-67550627 Msa1118760:intron 45.0%
! TTTTTGATGCAGAGGCCAAG+AGG + chr7_3:67550708-67550727 Msa1118760:intron 45.0%
CCAAGAGGATTGAAGGCTAT+GGG + chr7_3:67550723-67550742 Msa1118760:CDS 45.0%
CAAGAGGATTGAAGGCTATG+GGG + chr7_3:67550724-67550743 Msa1118760:CDS 45.0%
! CGGCCAAATTTTTGCAAAGG+TGG - chr7_3:67551249-67551268 None:intergenic 45.0%
GATTAATGTGAGCCTCAAGC+AGG + chr7_3:67551399-67551418 Msa1118760:three_prime_UTR 45.0%
GTCACTGAACTTAGACCATG+TGG + chr7_3:67551575-67551594 Msa1118760:three_prime_UTR 45.0%
ACTGCAGATTTCCTGACAGT+AGG + chr7_3:67551966-67551985 Msa1118760:three_prime_UTR 45.0%
CTGCAGATTTCCTGACAGTA+GGG + chr7_3:67551967-67551986 Msa1118760:three_prime_UTR 45.0%
!!! TTTTTTCTAAATATAATTTT+TGG + chr7_3:67550684-67550703 Msa1118760:intron 5.0%
!!! TTTTTCTAAATATAATTTTT+GGG + chr7_3:67550685-67550704 Msa1118760:intron 5.0%
!!! TACATTTATTATTTTAATTT+TGG + chr7_3:67551763-67551782 Msa1118760:three_prime_UTR 5.0%
CCAGAGTTCTTCTTGCAGTG+GGG + chr7_3:67549372-67549391 Msa1118760:CDS 50.0%
TCTTCTTGCAGTGGGGAAAC+AGG + chr7_3:67549379-67549398 Msa1118760:CDS 50.0%
GGAGTGGAGAATCATCGTTC+TGG + chr7_3:67549486-67549505 Msa1118760:CDS 50.0%
TGGAACTATTCTACGACCGG+CGG + chr7_3:67550135-67550154 Msa1118760:CDS 50.0%
AAAATCGGCATCACCGGAGA+AGG + chr7_3:67550171-67550190 Msa1118760:CDS 50.0%
GATCGATACTACACGACGAG+GGG + chr7_3:67550196-67550215 Msa1118760:CDS 50.0%
ATCGATACTACACGACGAGG+GGG + chr7_3:67550197-67550216 Msa1118760:CDS 50.0%
!!! GCCCTCTTTTTGGGTCTTTG+AGG - chr7_3:67550361-67550380 None:intergenic 50.0%
!! AGTTGGTAAGTCCTGGAGCA+TGG + chr7_3:67550536-67550555 Msa1118760:intron 50.0%
GCCAAGAGGATTGAAGGCTA+TGG + chr7_3:67550722-67550741 Msa1118760:CDS 50.0%
CCCATAGCCTTCAATCCTCT+TGG - chr7_3:67550726-67550745 None:intergenic 50.0%
ATTGAAGGCTATGGGGAGTG+TGG + chr7_3:67550731-67550750 Msa1118760:CDS 50.0%
! GATTTGGGTTCCCTACTGTC+AGG - chr7_3:67551980-67551999 None:intergenic 50.0%
TCTTTCAACTTTCGCGGCCA+CGG + chr7_3:67552068-67552087 Msa1118760:three_prime_UTR 50.0%
! GGTCGAAAGCAGTTTTTGCC+GGG - chr7_3:67552156-67552175 None:intergenic 50.0%
! CGGTCGAAAGCAGTTTTTGC+CGG - chr7_3:67552157-67552176 None:intergenic 50.0%
CCCCACTGCAAGAAGAACTC+TGG - chr7_3:67549375-67549394 None:intergenic 55.0%
TTTCTGTTATCTCCGGCCGC+CGG - chr7_3:67550154-67550173 None:intergenic 55.0%
TCAGCAGAGGACACCGGTAA+AGG + chr7_3:67550220-67550239 Msa1118760:CDS 55.0%
GCAGAGGCCAAGAGGATTGA+AGG + chr7_3:67550716-67550735 Msa1118760:intron 55.0%
ACTATTCTACGACCGGCGGC+CGG + chr7_3:67550139-67550158 Msa1118760:CDS 60.0%
! GCTTTAGACTGCGAGCCGTG+AGG + chr7_3:67552027-67552046 Msa1118760:three_prime_UTR 60.0%
AGCGTCTGTGTCACGGCTTG+CGG - chr7_3:67552111-67552130 None:intergenic 60.0%
AGGGGGTCAGCAGAGGACAC+CGG + chr7_3:67550214-67550233 Msa1118760:CDS 65.0%
CACGACGAGGGGGTCAGCAG+AGG + chr7_3:67550207-67550226 Msa1118760:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 67548837 67552176 67548837 ID=Msa1118760;Name=Msa1118760
chr7_3 mRNA 67548837 67552176 67548837 ID=Msa1118760-mRNA-1;Parent=Msa1118760;Name=Msa1118760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=273|1|1|1|0.5|0.42|7|1406|217
chr7_3 exon 67548837 67548992 67548837 ID=Msa1118760-mRNA-1:exon:16620;Parent=Msa1118760-mRNA-1
chr7_3 exon 67549013 67549055 67549013 ID=Msa1118760-mRNA-1:exon:16621;Parent=Msa1118760-mRNA-1
chr7_3 exon 67549163 67549234 67549163 ID=Msa1118760-mRNA-1:exon:16622;Parent=Msa1118760-mRNA-1
chr7_3 exon 67549325 67549571 67549325 ID=Msa1118760-mRNA-1:exon:16623;Parent=Msa1118760-mRNA-1
chr7_3 exon 67550126 67550405 67550126 ID=Msa1118760-mRNA-1:exon:16624;Parent=Msa1118760-mRNA-1
chr7_3 exon 67550538 67550615 67550538 ID=Msa1118760-mRNA-1:exon:16625;Parent=Msa1118760-mRNA-1
chr7_3 exon 67550720 67552176 67550720 ID=Msa1118760-mRNA-1:exon:16626;Parent=Msa1118760-mRNA-1
chr7_3 five_prime_UTR 67548837 67548992 67548837 ID=Msa1118760-mRNA-1:five_prime_utr;Parent=Msa1118760-mRNA-1
chr7_3 five_prime_UTR 67549013 67549055 67549013 ID=Msa1118760-mRNA-1:five_prime_utr;Parent=Msa1118760-mRNA-1
chr7_3 five_prime_UTR 67549163 67549234 67549163 ID=Msa1118760-mRNA-1:five_prime_utr;Parent=Msa1118760-mRNA-1
chr7_3 five_prime_UTR 67549325 67549326 67549325 ID=Msa1118760-mRNA-1:five_prime_utr;Parent=Msa1118760-mRNA-1
chr7_3 CDS 67549327 67549571 67549327 ID=Msa1118760-mRNA-1:cds;Parent=Msa1118760-mRNA-1
chr7_3 CDS 67550126 67550405 67550126 ID=Msa1118760-mRNA-1:cds;Parent=Msa1118760-mRNA-1
chr7_3 CDS 67550538 67550615 67550538 ID=Msa1118760-mRNA-1:cds;Parent=Msa1118760-mRNA-1
chr7_3 CDS 67550720 67550770 67550720 ID=Msa1118760-mRNA-1:cds;Parent=Msa1118760-mRNA-1
chr7_3 three_prime_UTR 67550771 67552176 67550771 ID=Msa1118760-mRNA-1:three_prime_utr;Parent=Msa1118760-mRNA-1
Gene Sequence

>Msa1118760

ATGGAGACAGAAGAGAGGAACCAAAGAGCATGTAAGGCAACAGAACCAGAGTTCTTCTTGCAGTGGGGAAACAGGAAGCGTTTGAGATGTGTAAGGGTGAAAGATCCTCGGATTTCAACTAGGCTTAACGGTGGTGTAATCAGAAGAAAGCTTAATTCTGGAGTGGAGAATCATCGTTCTGGTGTTACTGAGAAAGAAAGTTCTCATCTTCATCATCATCAACAACAACCTAATCGTCTCACAAGGAATTCCGATGGAACTATTCTACGACCGGCGGCCGGAGATAACAGAAAATCGGCATCACCGGAGAAGGAAGATCGATACTACACGACGAGGGGGTCAGCAGAGGACACCGGTAAAGGCACTTGCGATGTTATCAATGGAGAAGAAAAAGCTCTTGTTTGGCCTAAGCTTTACATTACTCTCTCAAGCAAAGAGAAAGAAGAAGATTTTCTTGCCATGAAAGGTTGTAAGCTTCCTCAAAGACCCAAAAAGAGGGCCAAAATCATCCAAAGAAGCTTATTGTTGGTAAGTCCTGGAGCATGGTTGACTGATATGTGTCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTAACAAGAAGAGGCCAAGAGGATTGAAGGCTATGGGGAGTGTGGAAAGTGATTCTGAATGA

Protein sequence

>Msa1118760

METEERNQRACKATEPEFFLQWGNRKRLRCVRVKDPRISTRLNGGVIRRKLNSGVENHRSGVTEKESSHLHHHQQQPNRLTRNSDGTILRPAAGDNRKSASPEKEDRYYTTRGSAEDTGKGTCDVINGEEKALVWPKLYITLSSKEKEEDFLAMKGCKLPQRPKKRAKIIQRSLLLVSPGAWLTDMCQERYEVREKKSNKKRPRGLKAMGSVESDSE*