AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124550 MtrunA17_Chr1g0185771 91.741 448 29 1 37 476 226 673 0.0 761
Msa0124550 MtrunA17_Chr1g0185771 100.000 38 0 0 1 38 1 38 6.37e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124550 AT4G02880.2 57.329 307 118 2 165 471 263 556 2.72e-99 309
Msa0124550 AT4G02880.1 57.329 307 118 2 165 471 259 552 2.81e-99 309
Msa0124550 AT1G03290.5 58.131 289 116 1 182 470 253 536 7.60e-94 295
Msa0124550 AT1G03290.5 78.378 37 8 0 1 37 1 37 7.05e-12 68.2
Msa0124550 AT1G03290.3 58.131 289 116 1 182 470 283 566 1.05e-93 295
Msa0124550 AT1G03290.3 78.378 37 8 0 1 37 1 37 8.06e-12 67.8
Msa0124550 AT1G03290.2 58.131 289 116 1 182 470 283 566 1.05e-93 295
Msa0124550 AT1G03290.2 78.378 37 8 0 1 37 1 37 8.06e-12 67.8
Msa0124550 AT1G03290.4 58.131 289 116 1 182 470 283 566 1.05e-93 295
Msa0124550 AT1G03290.4 78.378 37 8 0 1 37 1 37 8.06e-12 67.8
Msa0124550 AT1G03290.1 58.131 289 116 1 182 470 283 566 1.05e-93 295
Msa0124550 AT1G03290.1 78.378 37 8 0 1 37 1 37 8.06e-12 67.8
Msa0124550 AT1G03290.6 78.378 37 8 0 1 37 1 37 5.84e-12 68.2

Find 89 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCATGCTGGGGAAATTTA+TGG 0.158311 1_3:+52413217 Msa0124550:intron
GGATGTCATTGTTGAAAATT+TGG 0.236630 1_3:+52412278 Msa0124550:CDS
AGGAGACATCAAATGGATTT+TGG 0.242755 1_3:+52412217 Msa0124550:intron
TGTCTGTACAGGTTGATTCT+AGG 0.261657 1_3:+52411271 Msa0124550:intron
AGTTGCATCTTAGCTTCTTC+TGG 0.265917 1_3:+52414761 Msa0124550:CDS
TCCGGTGGTCGCTGCTATAT+TGG 0.280747 1_3:-52413011 None:intergenic
GTTGAAAATTTGGCATCTTC+AGG 0.284090 1_3:+52412288 Msa0124550:CDS
TCAAACAGTGTCTCAAGTTC+AGG 0.292873 1_3:+52412521 Msa0124550:CDS
TTATGGCGAAAAGGCAATTC+TGG 0.316460 1_3:+52413234 Msa0124550:CDS
TCCCCACCATTGAAAACAAT+TGG 0.336636 1_3:-52414866 None:intergenic
GAGGGTTTGATATTCTAGAT+AGG 0.355256 1_3:+52413032 Msa0124550:CDS
ACACTCGAAGGATGCTGATA+TGG 0.368730 1_3:+52411317 Msa0124550:CDS
TACTGCAGGCTGGATTATAT+TGG 0.370799 1_3:-52412632 None:intergenic
TCACGTCTGTCCAGCTTGTC+TGG 0.392930 1_3:+52413280 Msa0124550:CDS
CCCCACCATTGAAAACAATT+GGG 0.410851 1_3:-52414865 None:intergenic
TTCTAGGTTGTTGAGGGCAG+TGG 0.411711 1_3:+52411287 Msa0124550:CDS
CTGCGATACAAGACACGTAT+TGG 0.412664 1_3:+52412455 Msa0124550:CDS
AGAAATTTCTGTTATCTGTC+AGG 0.418878 1_3:+52414667 Msa0124550:CDS
GATGAGAGAGGTGGAACATC+AGG 0.426615 1_3:+52412970 Msa0124550:CDS
TGAAAACAATTGGGGCTGCC+TGG 0.429019 1_3:-52414856 None:intergenic
CACAATGCTCTTATTGATGA+TGG 0.440539 1_3:+52414911 Msa0124550:CDS
TCAGGAGAAACTTGCAGAGC+AGG 0.457789 1_3:+52412988 Msa0124550:CDS
GTCCAGCTTGTCTGGTGAAA+GGG 0.461081 1_3:+52413288 Msa0124550:CDS
AAGAGCATTGTGTTCAGCCT+TGG 0.467976 1_3:-52414900 None:intergenic
GGTTGATTCTAGGTTGTTGA+GGG 0.470157 1_3:+52411281 Msa0124550:intron
ATCCCTTTCACCAGACAAGC+TGG 0.471279 1_3:-52413290 None:intergenic
ATTTCCCAGGAGACATCAAA+TGG 0.472240 1_3:+52412210 Msa0124550:intron
TCCATTGCCATTGTTAGTCA+TGG 0.473377 1_3:-52412364 None:intergenic
TGTCCAGCTTGTCTGGTGAA+AGG 0.474114 1_3:+52413287 Msa0124550:CDS
TCTAGAACAAGAAGCAATGA+TGG 0.490819 1_3:+52413631 Msa0124550:CDS
CTAATCGAGATTCAAGACTT+TGG 0.492088 1_3:-52413535 None:intergenic
CAAAACTGTGGCATCTAATG+TGG 0.495135 1_3:+52414793 Msa0124550:CDS
AATGATGGAGAAGGTAGTAC+AGG 0.501842 1_3:+52413646 Msa0124550:CDS
CAACCTGCCCACGATCCATC+AGG 0.511341 1_3:-52414211 None:intergenic
GCCAATATAGCAGCGACCAC+CGG 0.517149 1_3:+52413010 Msa0124550:CDS
AGGGTTTGATATTCTAGATA+GGG 0.517722 1_3:+52413033 Msa0124550:CDS
TGGGGAAATTTATGGCGAAA+AGG 0.520761 1_3:+52413225 Msa0124550:CDS
CAAACAGTGTCTCAAGTTCA+GGG 0.526735 1_3:+52412522 Msa0124550:CDS
CGTGAGTTCCTGATGGATCG+TGG 0.534361 1_3:+52414203 Msa0124550:CDS
AGCATATCAATACTGCAGGC+TGG 0.534938 1_3:-52412642 None:intergenic
AGGTTGATTCTAGGTTGTTG+AGG 0.535196 1_3:+52411280 Msa0124550:intron
GAAAACAATTGGGGCTGCCT+GGG 0.536146 1_3:-52414855 None:intergenic
ACAGTTACGTGAGTTCCTGA+TGG 0.538443 1_3:+52414196 Msa0124550:intron
CTCAAGCATATCAATACTGC+AGG 0.545954 1_3:-52412646 None:intergenic
TGTATATCACGTGTTGGAGA+TGG 0.547474 1_3:+52412311 Msa0124550:CDS
GTTCCTGATGGATCGTGGGC+AGG 0.547821 1_3:+52414208 Msa0124550:CDS
AAAGATGCAGAACTGGACTC+TGG 0.555288 1_3:+52414950 Msa0124550:CDS
ATCTAGAATATCAAACCCTC+CGG 0.557961 1_3:-52413029 None:intergenic
TTCTTTAGCGTGCACCAACA+TGG 0.558785 1_3:-52413071 None:intergenic
CAAACAATCTGAATGAAGAG+TGG 0.561365 1_3:+52412391 Msa0124550:CDS
ACAGATAAATGTTGCAGAGG+AGG 0.561478 1_3:+52412335 Msa0124550:CDS
GGAAGCTGAAGAGAATTCAA+AGG 0.561722 1_3:+52413688 Msa0124550:CDS
TGCTCTTATTGATGATGGGT+GGG 0.565812 1_3:+52414916 Msa0124550:CDS
TCCATGACTAACAATGGCAA+TGG 0.567732 1_3:+52412363 Msa0124550:CDS
AATTCTGGCGACTGAGCTGA+AGG 0.568587 1_3:+52413249 Msa0124550:CDS
AAACAATCTGAATGAAGAGT+GGG 0.568659 1_3:+52412392 Msa0124550:CDS
ATTGATGAGAATACGACTCT+AGG 0.573030 1_3:+52412609 Msa0124550:CDS
GCTGTGAATGATTTGCTCAA+AGG 0.574101 1_3:-52414728 None:intergenic
TTCAGGTGTATATCACGTGT+TGG 0.574166 1_3:+52412305 Msa0124550:CDS
ACAAGAAGCAATGATGGAGA+AGG 0.575425 1_3:+52413637 Msa0124550:CDS
GTCTCTTGCAATTCTTGATG+AGG 0.585007 1_3:+52413315 Msa0124550:CDS
AGCAGAAATGTTGAGGAAAG+CGG 0.595016 1_3:+52413562 Msa0124550:CDS
CGCTAAAGAAGCAAATGACA+TGG 0.595563 1_3:+52413084 Msa0124550:CDS
GCATCATAATCTTCAGCCGT+AGG 0.597685 1_3:-52412426 None:intergenic
AGATTCCATTGATGAAAACA+AGG 0.603118 1_3:-52412936 None:intergenic
CCCACCATTGAAAACAATTG+GGG 0.604270 1_3:-52414864 None:intergenic
GTGAGTTCCTGATGGATCGT+GGG 0.605354 1_3:+52414204 Msa0124550:CDS
ACAATGCTCTTATTGATGAT+GGG 0.607324 1_3:+52414912 Msa0124550:CDS
AATATAGCAGCGACCACCGG+AGG 0.613783 1_3:+52413013 Msa0124550:CDS
AGATGAGTATCAAGCCATGT+TGG 0.617399 1_3:+52413057 Msa0124550:CDS
GCTGCTTCCATGACTAACAA+TGG 0.617805 1_3:+52412357 Msa0124550:CDS
TATCAACTTGATGAGAGAGG+TGG 0.618003 1_3:+52412961 Msa0124550:CDS
GGAATCACGGAGACTACAGC+AGG 0.619130 1_3:+52413667 Msa0124550:CDS
TAGCTGCAGCAGAAATGTTG+AGG 0.619883 1_3:+52413555 Msa0124550:CDS
TAGAATATCAAACCCTCCGG+TGG 0.620228 1_3:-52413026 None:intergenic
CTGCAGTATTGATATGCTTG+AGG 0.622883 1_3:+52412647 Msa0124550:CDS
AGAAGGTAGTACAGGAATCA+CGG 0.625668 1_3:+52413654 Msa0124550:CDS
ATGCTCTTATTGATGATGGG+TGG 0.625789 1_3:+52414915 Msa0124550:CDS
GGAACAGATAAATGTTGCAG+AGG 0.632351 1_3:+52412332 Msa0124550:CDS
AAAACTGTGGCATCTAATGT+GGG 0.641802 1_3:+52414794 Msa0124550:CDS
AAACAGTGTCTCAAGTTCAG+GGG 0.648434 1_3:+52412523 Msa0124550:CDS
AGAGTCTTCTGACTCGACCA+AGG 0.648988 1_3:-52412493 None:intergenic
TCTTATCAACTTGATGAGAG+AGG 0.649092 1_3:+52412958 Msa0124550:CDS
TTCCGTAAGAACAACTTCAG+CGG 0.658627 1_3:-52411340 None:intergenic
TGGTTCATCCCACAAAACTG+TGG 0.661631 1_3:+52414781 Msa0124550:CDS
ATATAGCAGCGACCACCGGA+GGG 0.663604 1_3:+52413014 Msa0124550:CDS
AGTGGCTATTGAACACTCGA+AGG 0.665070 1_3:+52411305 Msa0124550:CDS
TGGGGAAGAGGAGAGCTCCA+AGG 0.665274 1_3:+52414883 Msa0124550:CDS
TGAAGTACTCAAGATCACCC+AGG 0.679720 1_3:+52414838 Msa0124550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATCTCTTTAATATATT+TGG - chr1_3:52411189-52411208 None:intergenic 10.0%
!! TATTAAATTATTCAAAACAA+TGG - chr1_3:52412799-52412818 None:intergenic 10.0%
!!! ATTTTTATAATAACTTTTAG+TGG + chr1_3:52413890-52413909 Msa0124550:intron 10.0%
!!! TTTTTATAATAACTTTTAGT+GGG + chr1_3:52413891-52413910 Msa0124550:intron 10.0%
!! ATTAAAAATCATTAAACAAT+GGG - chr1_3:52414153-52414172 None:intergenic 10.0%
!! AATTAAAAATCATTAAACAA+TGG - chr1_3:52414154-52414173 None:intergenic 10.0%
!! AAAAGTAGATTTAATAAATT+TGG - chr1_3:52414629-52414648 None:intergenic 10.0%
!! ATTTCACTGTTATTATTTAA+TGG + chr1_3:52413461-52413480 Msa0124550:intron 15.0%
!! TTTACAGAAATATAATGAAA+TGG - chr1_3:52413740-52413759 None:intergenic 15.0%
!!! TAAAAGAACTTTTTCATATA+TGG - chr1_3:52413766-52413785 None:intergenic 15.0%
!! TTAAAAATCATTAAACAATG+GGG - chr1_3:52414152-52414171 None:intergenic 15.0%
!! TAATCAAAATTACACTAAAA+AGG - chr1_3:52414378-52414397 None:intergenic 15.0%
!!! TTTTAGTGTAATTTTGATTA+TGG + chr1_3:52414378-52414397 Msa0124550:intron 15.0%
!! ATCTACAATCATAATTGAAT+AGG - chr1_3:52410351-52410370 None:intergenic 20.0%
!!! ATCATGTTTTATTTGTATTC+TGG + chr1_3:52410431-52410450 Msa0124550:intron 20.0%
!!! TAAATTTAACTTTCTACCTA+AGG + chr1_3:52410519-52410538 Msa0124550:intron 20.0%
!! TAAACAAAAATACTAACTTG+AGG + chr1_3:52410719-52410738 Msa0124550:intron 20.0%
!! TATGACTATTACTTTCTTAT+TGG + chr1_3:52410805-52410824 Msa0124550:intron 20.0%
!! ATGACTATTACTTTCTTATT+GGG + chr1_3:52410806-52410825 Msa0124550:intron 20.0%
!! ATATTAAAGAGATATTACAC+TGG + chr1_3:52411192-52411211 Msa0124550:intron 20.0%
!! TATTAAAGAGATATTACACT+GGG + chr1_3:52411193-52411212 Msa0124550:intron 20.0%
!!! GTAATTTTTTAGAAATTGCT+GGG - chr1_3:52411371-52411390 None:intergenic 20.0%
!!! AGTAATTTTTTAGAAATTGC+TGG - chr1_3:52411372-52411391 None:intergenic 20.0%
!! AGTTCTATCAAATATAAGTA+AGG - chr1_3:52412757-52412776 None:intergenic 20.0%
!!! AGCTTTTAAATATTTGATGA+TGG + chr1_3:52413145-52413164 Msa0124550:intron 20.0%
!! AGAAATATAATGAAATGGTT+TGG - chr1_3:52413735-52413754 None:intergenic 20.0%
!!! TCTAAATATTATTTTCTTCC+TGG + chr1_3:52414278-52414297 Msa0124550:intron 20.0%
! CCAATTGAAGTTAACAAATT+CGG - chr1_3:52410459-52410478 None:intergenic 25.0%
!!! CGAATTTGTTAACTTCAATT+GGG + chr1_3:52410457-52410476 Msa0124550:intron 25.0%
! TGTTTAATCATACAATCCTT+AGG - chr1_3:52410538-52410557 None:intergenic 25.0%
! ACTAAAAACATAGGAAACTT+GGG - chr1_3:52410581-52410600 None:intergenic 25.0%
! TGACTATTACTTTCTTATTG+GGG + chr1_3:52410807-52410826 Msa0124550:intron 25.0%
! TATATGACACTTGAGTTTAT+CGG + chr1_3:52410869-52410888 Msa0124550:intron 25.0%
! AGCAAGTCAATTTACAATTA+GGG - chr1_3:52410907-52410926 None:intergenic 25.0%
! AAGCAAGTCAATTTACAATT+AGG - chr1_3:52410908-52410927 None:intergenic 25.0%
! TTTCTGACTGTAACAAATTT+AGG + chr1_3:52411080-52411099 Msa0124550:intron 25.0%
!!! TCATAAGCTTGTTAAAAGTA+TGG + chr1_3:52411593-52411612 Msa0124550:intron 25.0%
! CTTATTCACATTATGTACAT+CGG + chr1_3:52411628-52411647 Msa0124550:intron 25.0%
! TTATTCACATTATGTACATC+GGG + chr1_3:52411629-52411648 Msa0124550:intron 25.0%
!! CAGTCCTATTTTCTTATATT+TGG + chr1_3:52412706-52412725 Msa0124550:intron 25.0%
! GCATCCAAATATAAGAAAAT+AGG - chr1_3:52412713-52412732 None:intergenic 25.0%
! TCACTGTTATTATTTAATGG+AGG + chr1_3:52413464-52413483 Msa0124550:intron 25.0%
! TGTGTATAGTAAGTTCATAT+TGG + chr1_3:52413787-52413806 Msa0124550:intron 25.0%
! GAATTACAAGGAAAAGATAA+GGG + chr1_3:52413948-52413967 Msa0124550:intron 25.0%
! TACAACAAAATGAACAGATA+GGG - chr1_3:52414437-52414456 None:intergenic 25.0%
TTGAATAGGTATGTATACCT+GGG - chr1_3:52410337-52410356 None:intergenic 30.0%
ATTGAATAGGTATGTATACC+TGG - chr1_3:52410338-52410357 None:intergenic 30.0%
!! CCGAATTTGTTAACTTCAAT+TGG + chr1_3:52410456-52410475 Msa0124550:intron 30.0%
GACTAAAAACATAGGAAACT+TGG - chr1_3:52410582-52410601 None:intergenic 30.0%
TTCAAACGCTATAATTGCAT+GGG - chr1_3:52410604-52410623 None:intergenic 30.0%
! TTGTTGCTTATAGTCGTTAT+TGG + chr1_3:52410654-52410673 Msa0124550:intron 30.0%
! TGTTGCTTATAGTCGTTATT+GGG + chr1_3:52410655-52410674 Msa0124550:intron 30.0%
!! CCAACAATTAAAGTGTTTTC+TGG - chr1_3:52410754-52410773 None:intergenic 30.0%
CCAGAAAACACTTTAATTGT+TGG + chr1_3:52410751-52410770 Msa0124550:intron 30.0%
GACTATTACTTTCTTATTGG+GGG + chr1_3:52410808-52410827 Msa0124550:intron 30.0%
TGGAATGGTTATATCAATCA+TGG + chr1_3:52410832-52410851 Msa0124550:intron 30.0%
! TTGAGTTTATCGGATTTTCA+AGG + chr1_3:52410879-52410898 Msa0124550:intron 30.0%
ATCAGAATGTGAACTATTCA+AGG + chr1_3:52411024-52411043 Msa0124550:intron 30.0%
! TATTTCTGAAGACTTATTCG+TGG - chr1_3:52411149-52411168 None:intergenic 30.0%
TACAGACAAAGAAAGAAACA+GGG - chr1_3:52411259-52411278 None:intergenic 30.0%
AAAGTGAAAGTGAAGATGAA+GGG + chr1_3:52411556-52411575 Msa0124550:intron 30.0%
! CTTGTTAAAAGTATGGATGT+TGG + chr1_3:52411600-52411619 Msa0124550:intron 30.0%
TTACTGTAACATTCAGATCT+GGG - chr1_3:52411686-52411705 None:intergenic 30.0%
CAAGGTTTATAAATGCTACA+GGG - chr1_3:52411728-52411747 None:intergenic 30.0%
TCAAGGTTTATAAATGCTAC+AGG - chr1_3:52411729-52411748 None:intergenic 30.0%
GTAGCATTTATAAACCTTGA+AGG + chr1_3:52411729-52411748 Msa0124550:intron 30.0%
!! AGCTAGTGAAAATTTTGATC+AGG + chr1_3:52412245-52412264 Msa0124550:CDS 30.0%
!! GCTAGTGAAAATTTTGATCA+GGG + chr1_3:52412246-52412265 Msa0124550:CDS 30.0%
GGATGTCATTGTTGAAAATT+TGG + chr1_3:52412278-52412297 Msa0124550:CDS 30.0%
AAACAATCTGAATGAAGAGT+GGG + chr1_3:52412392-52412411 Msa0124550:CDS 30.0%
!!! ATTTGTTTTTGCTTCATCGA+TGG - chr1_3:52412676-52412695 None:intergenic 30.0%
CGATGAAGCAAAAACAAATA+AGG + chr1_3:52412677-52412696 Msa0124550:CDS 30.0%
ATTCAAAACAATGGTTACAC+TGG - chr1_3:52412790-52412809 None:intergenic 30.0%
!!! GAAAACCTTGTTTTCATCAA+TGG + chr1_3:52412931-52412950 Msa0124550:intron 30.0%
AGATTCCATTGATGAAAACA+AGG - chr1_3:52412939-52412958 None:intergenic 30.0%
AGGGTTTGATATTCTAGATA+GGG + chr1_3:52413033-52413052 Msa0124550:CDS 30.0%
!!! TGATGGTTTTTTAGACATGA+TGG + chr1_3:52413162-52413181 Msa0124550:intron 30.0%
TCTGAATAATCTCAGTTAGT+CGG - chr1_3:52413433-52413452 None:intergenic 30.0%
CTAACTGAGATTATTCAGAT+CGG + chr1_3:52413434-52413453 Msa0124550:intron 30.0%
AAAGCTTGAAAAAGAGGAAT+CGG + chr1_3:52413595-52413614 Msa0124550:CDS 30.0%
ATATTGGTCCTCTAATCTTT+AGG + chr1_3:52413803-52413822 Msa0124550:intron 30.0%
TATTGGTCCTCTAATCTTTA+GGG + chr1_3:52413804-52413823 Msa0124550:intron 30.0%
!! AAATGGAAGTGTCCATTAAA+TGG - chr1_3:52413843-52413862 None:intergenic 30.0%
! ATTTAATGGACACTTCCATT+TGG + chr1_3:52413842-52413861 Msa0124550:intron 30.0%
! TTTAAGATCGTGATACACAT+TGG + chr1_3:52413915-52413934 Msa0124550:intron 30.0%
GGAATTACAAGGAAAAGATA+AGG + chr1_3:52413947-52413966 Msa0124550:intron 30.0%
!! AGCGAATGAATTTAGCTTTA+TGG - chr1_3:52414030-52414049 None:intergenic 30.0%
! CTAATCTATAGGCTTTGATT+GGG - chr1_3:52414071-52414090 None:intergenic 30.0%
! ACTAATCTATAGGCTTTGAT+TGG - chr1_3:52414072-52414091 None:intergenic 30.0%
CCAATCGTTAACTAATCTAT+AGG - chr1_3:52414082-52414101 None:intergenic 30.0%
! CCTATAGATTAGTTAACGAT+TGG + chr1_3:52414079-52414098 Msa0124550:intron 30.0%
!! AGTATTGATAGTTCAATACC+AGG - chr1_3:52414299-52414318 None:intergenic 30.0%
GTACAACAAAATGAACAGAT+AGG - chr1_3:52414438-52414457 None:intergenic 30.0%
!! ATCTGTTCATTTTGTTGTAC+TGG + chr1_3:52414438-52414457 Msa0124550:intron 30.0%
TAGGGAAACAGTAAATCAAA+TGG - chr1_3:52414467-52414486 None:intergenic 30.0%
ATACTGAAACAGGATTTCTA+GGG - chr1_3:52414485-52414504 None:intergenic 30.0%
TATACTGAAACAGGATTTCT+AGG - chr1_3:52414486-52414505 None:intergenic 30.0%
AATCCTGTTTCAGTATAACT+TGG + chr1_3:52414489-52414508 Msa0124550:intron 30.0%
TATCCAAGTTATACTGAAAC+AGG - chr1_3:52414495-52414514 None:intergenic 30.0%
!! CTTTTTGTTTAACTTTGCAG+AGG + chr1_3:52414644-52414663 Msa0124550:intron 30.0%
AGAAATTTCTGTTATCTGTC+AGG + chr1_3:52414667-52414686 Msa0124550:CDS 30.0%
! ACAATGCTCTTATTGATGAT+GGG + chr1_3:52414912-52414931 Msa0124550:CDS 30.0%
TGAATAGGTATGTATACCTG+GGG - chr1_3:52410336-52410355 None:intergenic 35.0%
TTGCATGGGACTAAAAACAT+AGG - chr1_3:52410590-52410609 None:intergenic 35.0%
CTTCAAACGCTATAATTGCA+TGG - chr1_3:52410605-52410624 None:intergenic 35.0%
ATTACTTTCTTATTGGGGGA+TGG + chr1_3:52410812-52410831 Msa0124550:intron 35.0%
AAGAAGCAGGTATCAATAAC+AGG - chr1_3:52411230-52411249 None:intergenic 35.0%
GTACAGACAAAGAAAGAAAC+AGG - chr1_3:52411260-52411279 None:intergenic 35.0%
GTTTCTTTCTTTGTCTGTAC+AGG + chr1_3:52411260-52411279 Msa0124550:intron 35.0%
AAAGCAAGCTAAGTAGAGAA+TGG - chr1_3:52411482-52411501 None:intergenic 35.0%
!! CTACTTAGCTTGCTTTGAAA+TGG + chr1_3:52411486-52411505 Msa0124550:intron 35.0%
GAAAGTGAAAGTGAAGATGA+AGG + chr1_3:52411555-52411574 Msa0124550:intron 35.0%
AAGTGAAAGTGAAGATGAAG+GGG + chr1_3:52411557-52411576 Msa0124550:intron 35.0%
GTTACTGTAACATTCAGATC+TGG - chr1_3:52411687-52411706 None:intergenic 35.0%
AGAAAGTGAACAAACCTTCA+AGG - chr1_3:52411746-52411765 None:intergenic 35.0%
! ATACCTTGCTTGCTTTGAAT+TGG + chr1_3:52411786-52411805 Msa0124550:intron 35.0%
CTGTTGAAGATACTGATGTT+GGG + chr1_3:52411889-52411908 Msa0124550:intron 35.0%
CATTATTTACCCCAAGCAAT+TGG - chr1_3:52412158-52412177 None:intergenic 35.0%
TTGCTTGGGGTAAATAATGA+TGG + chr1_3:52412159-52412178 Msa0124550:intron 35.0%
TATCTCTAGTGAAATTTCCC+AGG + chr1_3:52412197-52412216 Msa0124550:intron 35.0%
AAATCCATTTGATGTCTCCT+GGG - chr1_3:52412217-52412236 None:intergenic 35.0%
AAAATCCATTTGATGTCTCC+TGG - chr1_3:52412218-52412237 None:intergenic 35.0%
!! AGGAGACATCAAATGGATTT+TGG + chr1_3:52412217-52412236 Msa0124550:intron 35.0%
GTTGAAAATTTGGCATCTTC+AGG + chr1_3:52412288-52412307 Msa0124550:CDS 35.0%
CAAACAATCTGAATGAAGAG+TGG + chr1_3:52412391-52412410 Msa0124550:CDS 35.0%
ATTGATGAGAATACGACTCT+AGG + chr1_3:52412609-52412628 Msa0124550:CDS 35.0%
TCTTATCAACTTGATGAGAG+AGG + chr1_3:52412958-52412977 Msa0124550:CDS 35.0%
! ATCTAGAATATCAAACCCTC+CGG - chr1_3:52413032-52413051 None:intergenic 35.0%
GAGGGTTTGATATTCTAGAT+AGG + chr1_3:52413032-52413051 Msa0124550:CDS 35.0%
AAGAAGCAAATGACATGGTT+CGG + chr1_3:52413089-52413108 Msa0124550:intron 35.0%
!! ACTTTTTATTTGCAGCATGC+TGG + chr1_3:52413205-52413224 Msa0124550:intron 35.0%
!! CTTTTTATTTGCAGCATGCT+GGG + chr1_3:52413206-52413225 Msa0124550:intron 35.0%
!! TTTTTATTTGCAGCATGCTG+GGG + chr1_3:52413207-52413226 Msa0124550:intron 35.0%
CTAATCGAGATTCAAGACTT+TGG - chr1_3:52413538-52413557 None:intergenic 35.0%
GCTTGAAAAGCTTGAAAAAG+AGG + chr1_3:52413589-52413608 Msa0124550:CDS 35.0%
! TCTAGAACAAGAAGCAATGA+TGG + chr1_3:52413631-52413650 Msa0124550:CDS 35.0%
ATTGGTCCTCTAATCTTTAG+GGG + chr1_3:52413805-52413824 Msa0124550:intron 35.0%
TTGAGATGCTCTCCATTTAA+TGG + chr1_3:52413828-52413847 Msa0124550:intron 35.0%
!! TGATACACATTGGCTTTGAT+TGG + chr1_3:52413925-52413944 Msa0124550:intron 35.0%
!! GATACACATTGGCTTTGATT+GGG + chr1_3:52413926-52413945 Msa0124550:intron 35.0%
GACTCTAAACTGGGTAAATA+TGG - chr1_3:52414109-52414128 None:intergenic 35.0%
!! TACTCTGTTGACTCTAAACT+GGG - chr1_3:52414118-52414137 None:intergenic 35.0%
ACGTAACTGTAAAGATGAGA+AGG - chr1_3:52414186-52414205 None:intergenic 35.0%
TTGTCTCTGCAACATTCTAT+TGG + chr1_3:52414319-52414338 Msa0124550:intron 35.0%
AATACAATGTGCAAGTCTGA+GGG - chr1_3:52414554-52414573 None:intergenic 35.0%
!! ATTAGATGCCACAGTTTTGT+GGG - chr1_3:52414792-52414811 None:intergenic 35.0%
AAAACTGTGGCATCTAATGT+GGG + chr1_3:52414794-52414813 Msa0124550:CDS 35.0%
CACAATGCTCTTATTGATGA+TGG + chr1_3:52414911-52414930 Msa0124550:CDS 35.0%
! TTTTGACAAAGATGCAGAAC+TGG + chr1_3:52414943-52414962 Msa0124550:CDS 35.0%
! TTTGCTCGATATTTTTCCCC+AGG + chr1_3:52410317-52410336 Msa0124550:CDS 40.0%
TGCAAATTCCAAAACCGTAG+CGG - chr1_3:52410688-52410707 None:intergenic 40.0%
!!! CTACGGTTTTGGAATTTGCA+AGG + chr1_3:52410688-52410707 Msa0124550:intron 40.0%
!!! GGTTTTGGAATTTGCAAGGT+CGG + chr1_3:52410692-52410711 Msa0124550:intron 40.0%
TTTCTTATTGGGGGATGGAA+TGG + chr1_3:52410817-52410836 Msa0124550:intron 40.0%
GAGATATTACACTGGGAATG+TGG + chr1_3:52411200-52411219 Msa0124550:intron 40.0%
!! TGTCTGTACAGGTTGATTCT+AGG + chr1_3:52411271-52411290 Msa0124550:intron 40.0%
! AGGTTGATTCTAGGTTGTTG+AGG + chr1_3:52411280-52411299 Msa0124550:intron 40.0%
! GGTTGATTCTAGGTTGTTGA+GGG + chr1_3:52411281-52411300 Msa0124550:intron 40.0%
TTCCGTAAGAACAACTTCAG+CGG - chr1_3:52411343-52411362 None:intergenic 40.0%
AAGCTAAGTAGAGAATGGCA+TGG - chr1_3:52411477-52411496 None:intergenic 40.0%
! TGAAGATGAAGGGGAGATTT+TGG + chr1_3:52411566-52411585 Msa0124550:intron 40.0%
CAAAGCAAGCAAGGTATAGA+TGG - chr1_3:52411783-52411802 None:intergenic 40.0%
ACACCAATTCAAAGCAAGCA+AGG - chr1_3:52411792-52411811 None:intergenic 40.0%
TGAATCTTCAGATGAAAGCG+AGG + chr1_3:52411836-52411855 Msa0124550:intron 40.0%
CCAACATCAGTATCTTCAAC+AGG - chr1_3:52411891-52411910 None:intergenic 40.0%
CCTGTTGAAGATACTGATGT+TGG + chr1_3:52411888-52411907 Msa0124550:intron 40.0%
! GCAGCTTTGATGATTTGTAC+AGG - chr1_3:52411951-52411970 None:intergenic 40.0%
ATCCAGTCCACAAGAAGAAT+CGG - chr1_3:52411973-52411992 None:intergenic 40.0%
! GGTTTCATCATTTAGCTCAC+TGG - chr1_3:52412133-52412152 None:intergenic 40.0%
ATGAAACCAGCCAATTGCTT+GGG + chr1_3:52412145-52412164 Msa0124550:intron 40.0%
ATTTCCCAGGAGACATCAAA+TGG + chr1_3:52412210-52412229 Msa0124550:intron 40.0%
TTCAGGTGTATATCACGTGT+TGG + chr1_3:52412305-52412324 Msa0124550:CDS 40.0%
TGTATATCACGTGTTGGAGA+TGG + chr1_3:52412311-52412330 Msa0124550:CDS 40.0%
GGAACAGATAAATGTTGCAG+AGG + chr1_3:52412332-52412351 Msa0124550:CDS 40.0%
ACAGATAAATGTTGCAGAGG+AGG + chr1_3:52412335-52412354 Msa0124550:CDS 40.0%
TCCATGACTAACAATGGCAA+TGG + chr1_3:52412363-52412382 Msa0124550:CDS 40.0%
TCCATTGCCATTGTTAGTCA+TGG - chr1_3:52412367-52412386 None:intergenic 40.0%
! GTGGGTAGATTTTGTTCCTA+CGG + chr1_3:52412410-52412429 Msa0124550:CDS 40.0%
! GGAAAAATCTGAAACTGCCT+TGG + chr1_3:52412476-52412495 Msa0124550:CDS 40.0%
TCAAACAGTGTCTCAAGTTC+AGG + chr1_3:52412521-52412540 Msa0124550:CDS 40.0%
CAAACAGTGTCTCAAGTTCA+GGG + chr1_3:52412522-52412541 Msa0124550:CDS 40.0%
AAACAGTGTCTCAAGTTCAG+GGG + chr1_3:52412523-52412542 Msa0124550:CDS 40.0%
TACTGCAGGCTGGATTATAT+TGG - chr1_3:52412635-52412654 None:intergenic 40.0%
CTCAAGCATATCAATACTGC+AGG - chr1_3:52412649-52412668 None:intergenic 40.0%
!! CTGCAGTATTGATATGCTTG+AGG + chr1_3:52412647-52412666 Msa0124550:CDS 40.0%
TATCAACTTGATGAGAGAGG+TGG + chr1_3:52412961-52412980 Msa0124550:CDS 40.0%
AGATGAGTATCAAGCCATGT+TGG + chr1_3:52413057-52413076 Msa0124550:CDS 40.0%
CGCTAAAGAAGCAAATGACA+TGG + chr1_3:52413084-52413103 Msa0124550:CDS 40.0%
TGGGGAAATTTATGGCGAAA+AGG + chr1_3:52413225-52413244 Msa0124550:CDS 40.0%
TTATGGCGAAAAGGCAATTC+TGG + chr1_3:52413234-52413253 Msa0124550:CDS 40.0%
GTCTCTTGCAATTCTTGATG+AGG + chr1_3:52413315-52413334 Msa0124550:CDS 40.0%
AGCAGAAATGTTGAGGAAAG+CGG + chr1_3:52413562-52413581 Msa0124550:CDS 40.0%
TTGAAAAAGAGGAATCGGCA+AGG + chr1_3:52413600-52413619 Msa0124550:CDS 40.0%
TGAAAAAGAGGAATCGGCAA+GGG + chr1_3:52413601-52413620 Msa0124550:CDS 40.0%
! ACAAGAAGCAATGATGGAGA+AGG + chr1_3:52413637-52413656 Msa0124550:CDS 40.0%
! AATGATGGAGAAGGTAGTAC+AGG + chr1_3:52413646-52413665 Msa0124550:CDS 40.0%
AGAAGGTAGTACAGGAATCA+CGG + chr1_3:52413654-52413673 Msa0124550:CDS 40.0%
GGAAGCTGAAGAGAATTCAA+AGG + chr1_3:52413688-52413707 Msa0124550:CDS 40.0%
! ATGAAATGGTTTGGAAGCAG+AGG - chr1_3:52413726-52413745 None:intergenic 40.0%
TCTCAACCCCTAAAGATTAG+AGG - chr1_3:52413814-52413833 None:intergenic 40.0%
TCATTGTCTCTCTCTCCAAA+TGG - chr1_3:52413860-52413879 None:intergenic 40.0%
! GGCTTTGATTGGGAATTACA+AGG + chr1_3:52413936-52413955 Msa0124550:intron 40.0%
TTGGGAGTTAGGAAAGGAAT+GGG - chr1_3:52414053-52414072 None:intergenic 40.0%
ATTGGGAGTTAGGAAAGGAA+TGG - chr1_3:52414054-52414073 None:intergenic 40.0%
CTTTGATTGGGAGTTAGGAA+AGG - chr1_3:52414059-52414078 None:intergenic 40.0%
! ATAGGCTTTGATTGGGAGTT+AGG - chr1_3:52414064-52414083 None:intergenic 40.0%
!! CTACTCTGTTGACTCTAAAC+TGG - chr1_3:52414119-52414138 None:intergenic 40.0%
TTAGAGTCAACAGAGTAGTG+AGG + chr1_3:52414121-52414140 Msa0124550:intron 40.0%
CAATACAATGTGCAAGTCTG+AGG - chr1_3:52414555-52414574 None:intergenic 40.0%
!! GCTGTGAATGATTTGCTCAA+AGG - chr1_3:52414731-52414750 None:intergenic 40.0%
AGTTGCATCTTAGCTTCTTC+TGG + chr1_3:52414761-52414780 Msa0124550:CDS 40.0%
! CATTAGATGCCACAGTTTTG+TGG - chr1_3:52414793-52414812 None:intergenic 40.0%
CAAAACTGTGGCATCTAATG+TGG + chr1_3:52414793-52414812 Msa0124550:CDS 40.0%
CCCACCATTGAAAACAATTG+GGG - chr1_3:52414867-52414886 None:intergenic 40.0%
! CCCCAATTGTTTTCAATGGT+GGG + chr1_3:52414864-52414883 Msa0124550:CDS 40.0%
CCCCACCATTGAAAACAATT+GGG - chr1_3:52414868-52414887 None:intergenic 40.0%
! CCCAATTGTTTTCAATGGTG+GGG + chr1_3:52414865-52414884 Msa0124550:CDS 40.0%
TCCCCACCATTGAAAACAAT+TGG - chr1_3:52414869-52414888 None:intergenic 40.0%
!! ATGCTCTTATTGATGATGGG+TGG + chr1_3:52414915-52414934 Msa0124550:CDS 40.0%
!! TGCTCTTATTGATGATGGGT+GGG + chr1_3:52414916-52414935 Msa0124550:CDS 40.0%
AATTCCAAAACCGTAGCGGT+AGG - chr1_3:52410684-52410703 None:intergenic 45.0%
TATTACACTGGGAATGTGGC+TGG + chr1_3:52411204-52411223 Msa0124550:intron 45.0%
AGTGGCTATTGAACACTCGA+AGG + chr1_3:52411305-52411324 Msa0124550:CDS 45.0%
ACACTCGAAGGATGCTGATA+TGG + chr1_3:52411317-52411336 Msa0124550:CDS 45.0%
CCAGGTTCACTATGACTCTA+GGG - chr1_3:52411422-52411441 None:intergenic 45.0%
TCCAGGTTCACTATGACTCT+AGG - chr1_3:52411423-52411442 None:intergenic 45.0%
AGAGTCATAGTGAACCTGGA+AGG + chr1_3:52411423-52411442 Msa0124550:intron 45.0%
! GAAGGTGCGTCTACTTGTTA+TGG + chr1_3:52411441-52411460 Msa0124550:intron 45.0%
AAATCTGCCAGCTCTTCTTC+TGG + chr1_3:52411660-52411679 Msa0124550:intron 45.0%
!!! GCTACAGGGCTTTTAACTTG+TGG - chr1_3:52411714-52411733 None:intergenic 45.0%
TCAGATGAAAGCGAGGATGA+AGG + chr1_3:52411843-52411862 Msa0124550:intron 45.0%
CAGATGAAAGCGAGGATGAA+GGG + chr1_3:52411844-52411863 Msa0124550:intron 45.0%
AAAGCGAGGATGAAGGGAAA+AGG + chr1_3:52411850-52411869 Msa0124550:intron 45.0%
TGGGTCGTCTTCATCATCAT+TGG + chr1_3:52411908-52411927 Msa0124550:intron 45.0%
!! AAAGCTGCCGATTCTTCTTG+TGG + chr1_3:52411963-52411982 Msa0124550:intron 45.0%
GATGAAACCAGCCAATTGCT+TGG + chr1_3:52412144-52412163 Msa0124550:intron 45.0%
TGAAACCAGCCAATTGCTTG+GGG + chr1_3:52412146-52412165 Msa0124550:intron 45.0%
ATTTACCCCAAGCAATTGGC+TGG - chr1_3:52412154-52412173 None:intergenic 45.0%
! TTTTGATCAGGGACGACTTG+TGG + chr1_3:52412257-52412276 Msa0124550:CDS 45.0%
GCTGCTTCCATGACTAACAA+TGG + chr1_3:52412357-52412376 Msa0124550:CDS 45.0%
GCATCATAATCTTCAGCCGT+AGG - chr1_3:52412429-52412448 None:intergenic 45.0%
CTGCGATACAAGACACGTAT+TGG + chr1_3:52412455-52412474 Msa0124550:CDS 45.0%
AGCATATCAATACTGCAGGC+TGG - chr1_3:52412645-52412664 None:intergenic 45.0%
TAGAATATCAAACCCTCCGG+TGG - chr1_3:52413029-52413048 None:intergenic 45.0%
TTCTTTAGCGTGCACCAACA+TGG - chr1_3:52413074-52413093 None:intergenic 45.0%
CAGCATGCTGGGGAAATTTA+TGG + chr1_3:52413217-52413236 Msa0124550:intron 45.0%
AGTTAGTCGGAAAGATGCTC+GGG - chr1_3:52413420-52413439 None:intergenic 45.0%
CAGTTAGTCGGAAAGATGCT+CGG - chr1_3:52413421-52413440 None:intergenic 45.0%
TAGCTGCAGCAGAAATGTTG+AGG + chr1_3:52413555-52413574 Msa0124550:CDS 45.0%
GGAAAAGATAAGGGAGCAGA+AGG + chr1_3:52413957-52413976 Msa0124550:intron 45.0%
CAAAATAGACCTCCCATGCA+AGG - chr1_3:52414005-52414024 None:intergenic 45.0%
ACAGTTACGTGAGTTCCTGA+TGG + chr1_3:52414196-52414215 Msa0124550:intron 45.0%
TGGTTCATCCCACAAAACTG+TGG + chr1_3:52414781-52414800 Msa0124550:CDS 45.0%
! TGAAGTACTCAAGATCACCC+AGG + chr1_3:52414838-52414857 Msa0124550:CDS 45.0%
! GCAGCCCCAATTGTTTTCAA+TGG + chr1_3:52414860-52414879 Msa0124550:CDS 45.0%
! GCCCCAATTGTTTTCAATGG+TGG + chr1_3:52414863-52414882 Msa0124550:CDS 45.0%
!! TGTTTTCAATGGTGGGGAAG+AGG + chr1_3:52414871-52414890 Msa0124550:CDS 45.0%
!! AAGAGCATTGTGTTCAGCCT+TGG - chr1_3:52414903-52414922 None:intergenic 45.0%
AAAGATGCAGAACTGGACTC+TGG + chr1_3:52414950-52414969 Msa0124550:CDS 45.0%
AACAGGGATCAGCAAGAAGC+AGG - chr1_3:52411243-52411262 None:intergenic 50.0%
TTCTAGGTTGTTGAGGGCAG+TGG + chr1_3:52411287-52411306 Msa0124550:CDS 50.0%
GGCCGCTGAAGTTGTTCTTA+CGG + chr1_3:52411338-52411357 Msa0124550:intron 50.0%
TACTTCCAGCATCCCCTTCA+CGG + chr1_3:52411388-52411407 Msa0124550:intron 50.0%
TAGGGCTTGTATCCCGTGAA+GGG - chr1_3:52411404-52411423 None:intergenic 50.0%
CCCTAGAGTCATAGTGAACC+TGG + chr1_3:52411419-52411438 Msa0124550:intron 50.0%
AACAAGTAGACGCACCTTCC+AGG - chr1_3:52411440-52411459 None:intergenic 50.0%
CGAGGATGAAGGGAAAAGGT+TGG + chr1_3:52411854-52411873 Msa0124550:intron 50.0%
!! TGCCGATTCTTCTTGTGGAC+TGG + chr1_3:52411968-52411987 Msa0124550:intron 50.0%
! AGAGTCTTCTGACTCGACCA+AGG - chr1_3:52412496-52412515 None:intergenic 50.0%
GATGAGAGAGGTGGAACATC+AGG + chr1_3:52412970-52412989 Msa0124550:CDS 50.0%
TCAGGAGAAACTTGCAGAGC+AGG + chr1_3:52412988-52413007 Msa0124550:CDS 50.0%
AATTCTGGCGACTGAGCTGA+AGG + chr1_3:52413249-52413268 Msa0124550:CDS 50.0%
TGTCCAGCTTGTCTGGTGAA+AGG + chr1_3:52413287-52413306 Msa0124550:CDS 50.0%
GTCCAGCTTGTCTGGTGAAA+GGG + chr1_3:52413288-52413307 Msa0124550:CDS 50.0%
ATCCCTTTCACCAGACAAGC+TGG - chr1_3:52413293-52413312 None:intergenic 50.0%
TAAGGGAGCAGAAGGAAGCA+AGG + chr1_3:52413965-52413984 Msa0124550:intron 50.0%
AAGGGAGCAGAAGGAAGCAA+GGG + chr1_3:52413966-52413985 Msa0124550:intron 50.0%
ATGATAGCTCCCACCTTGCA+TGG + chr1_3:52413989-52414008 Msa0124550:intron 50.0%
TGATAGCTCCCACCTTGCAT+GGG + chr1_3:52413990-52414009 Msa0124550:intron 50.0%
ATAGACCTCCCATGCAAGGT+GGG - chr1_3:52414001-52414020 None:intergenic 50.0%
AATAGACCTCCCATGCAAGG+TGG - chr1_3:52414002-52414021 None:intergenic 50.0%
! GTGAGTTCCTGATGGATCGT+GGG + chr1_3:52414204-52414223 Msa0124550:CDS 50.0%
GAAAACAATTGGGGCTGCCT+GGG - chr1_3:52414858-52414877 None:intergenic 50.0%
TGAAAACAATTGGGGCTGCC+TGG - chr1_3:52414859-52414878 None:intergenic 50.0%
TATTGGGCCACCTACCGCTA+CGG + chr1_3:52410671-52410690 Msa0124550:intron 55.0%
TCCAAAACCGTAGCGGTAGG+TGG - chr1_3:52410681-52410700 None:intergenic 55.0%
ACTTCCAGCATCCCCTTCAC+GGG + chr1_3:52411389-52411408 Msa0124550:intron 55.0%
AGGGCTTGTATCCCGTGAAG+GGG - chr1_3:52411403-52411422 None:intergenic 55.0%
CTAGGGCTTGTATCCCGTGA+AGG - chr1_3:52411405-52411424 None:intergenic 55.0%
ATCTGGGCCAGAAGAAGAGC+TGG - chr1_3:52411670-52411689 None:intergenic 55.0%
GCCAATATAGCAGCGACCAC+CGG + chr1_3:52413010-52413029 Msa0124550:CDS 55.0%
TCCGGTGGTCGCTGCTATAT+TGG - chr1_3:52413014-52413033 None:intergenic 55.0%
AATATAGCAGCGACCACCGG+AGG + chr1_3:52413013-52413032 Msa0124550:CDS 55.0%
ATATAGCAGCGACCACCGGA+GGG + chr1_3:52413014-52413033 Msa0124550:CDS 55.0%
TCACGTCTGTCCAGCTTGTC+TGG + chr1_3:52413280-52413299 Msa0124550:CDS 55.0%
GGAATCACGGAGACTACAGC+AGG + chr1_3:52413667-52413686 Msa0124550:CDS 55.0%
! CGTGAGTTCCTGATGGATCG+TGG + chr1_3:52414203-52414222 Msa0124550:CDS 55.0%
! GCCACCTACCGCTACGGTTT+TGG + chr1_3:52410677-52410696 Msa0124550:intron 60.0%
GTATCCCGTGAAGGGGATGC+TGG - chr1_3:52411396-52411415 None:intergenic 60.0%
TAGCTCCCACCTTGCATGGG+AGG + chr1_3:52413993-52414012 Msa0124550:intron 60.0%
! GTTCCTGATGGATCGTGGGC+AGG + chr1_3:52414208-52414227 Msa0124550:CDS 60.0%
CAACCTGCCCACGATCCATC+AGG - chr1_3:52414214-52414233 None:intergenic 60.0%
TGGGGAAGAGGAGAGCTCCA+AGG + chr1_3:52414883-52414902 Msa0124550:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 52410291 52414982 52410291 ID=Msa0124550;Name=Msa0124550
chr1_3 mRNA 52410291 52414982 52410291 ID=Msa0124550-mRNA-1;Parent=Msa0124550;Name=Msa0124550-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|1|1|8|0|476
chr1_3 exon 52410291 52410338 52410291 ID=Msa0124550-mRNA-1:exon:16062;Parent=Msa0124550-mRNA-1
chr1_3 exon 52411282 52411347 52411282 ID=Msa0124550-mRNA-1:exon:16063;Parent=Msa0124550-mRNA-1
chr1_3 exon 52412219 52412698 52412219 ID=Msa0124550-mRNA-1:exon:16064;Parent=Msa0124550-mRNA-1
chr1_3 exon 52412932 52413105 52412932 ID=Msa0124550-mRNA-1:exon:16065;Parent=Msa0124550-mRNA-1
chr1_3 exon 52413220 52413336 52413220 ID=Msa0124550-mRNA-1:exon:16066;Parent=Msa0124550-mRNA-1
chr1_3 exon 52413530 52413709 52413530 ID=Msa0124550-mRNA-1:exon:16067;Parent=Msa0124550-mRNA-1
chr1_3 exon 52414200 52414246 52414200 ID=Msa0124550-mRNA-1:exon:16068;Parent=Msa0124550-mRNA-1
chr1_3 exon 52414664 52414982 52414664 ID=Msa0124550-mRNA-1:exon:16069;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52410291 52410338 52410291 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52411282 52411347 52411282 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52412219 52412698 52412219 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52412932 52413105 52412932 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52413220 52413336 52413220 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52413530 52413709 52413530 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52414200 52414246 52414200 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
chr1_3 CDS 52414664 52414982 52414664 ID=Msa0124550-mRNA-1:cds;Parent=Msa0124550-mRNA-1
Gene Sequence

>Msa0124550

ATGGGTTTCAATTCTGTCTATAGATCTTTGCTCGATATTTTTCCCCAGGTTGATTCTAGGTTGTTGAGGGCAGTGGCTATTGAACACTCGAAGGATGCTGATATGGCCGCTGAAGAGACATCAAATGGATTTTGGCACGAAGCTAGTGAAAATTTTGATCAGGGACGACTTGTGGATGTCATTGTTGAAAATTTGGCATCTTCAGGTGTATATCACGTGTTGGAGATGGAACAGATAAATGTTGCAGAGGAGGCTGCTTCCATGACTAACAATGGCAATGGAACTTCAAACAATCTGAATGAAGAGTGGGTAGATTTTGTTCCTACGGCTGAAGATTATGATGCTACTATCTGCGATACAAGACACGTATTGGAAAAATCTGAAACTGCCTTGGTCGAGTCAGAAGACTCTGAAGTTCAAACAGTGTCTCAAGTTCAGGGGCTTACACTAAATGCTAAAGATATTCAGACAGAATTTAATACTACACTAAATGCTGTAGATGAGATTGATGAGAATACGACTCTAGGCCAATATAATCCAGCCTGCAGTATTGATATGCTTGAGGAGACCATCGATGAAGCAAAAACAAATAAGAAAACCTTGTTTTCATCAATGGAATCTCTTATCAACTTGATGAGAGAGGTGGAACATCAGGAGAAACTTGCAGAGCAGGCCAATATAGCAGCGACCACCGGAGGGTTTGATATTCTAGATAGGGTAGATGAGTATCAAGCCATGTTGGTGCACGCTAAAGAAGCAAATGACATGCATGCTGGGGAAATTTATGGCGAAAAGGCAATTCTGGCGACTGAGCTGAAGGAACTTCAATCACGTCTGTCCAGCTTGTCTGGTGAAAGGGATGAGTCTCTTGCAATTCTTGATGAGATGCGCCAAAGTCTTGAATCTCGATTAGCTGCAGCAGAAATGTTGAGGAAAGCGGCAGAGCTTGAAAAGCTTGAAAAAGAGGAATCGGCAAGGGCTGCACTTCTAGAACAAGAAGCAATGATGGAGAAGGTAGTACAGGAATCACGGAGACTACAGCAGGAAGCTGAAGAGAATTCAAAGTTACGTGAGTTCCTGATGGATCGTGGGCAGGTTGTTGATACGTTGCAAGGAGAAATTTCTGTTATCTGTCAGGATATTAGACTTCTGAAAGAGAAATTTGATGCAAATCTTCCTTTGAGCAAATCATTCACAGCAAGTCAGACAAGTTGCATCTTAGCTTCTTCTGGTTCATCCCACAAAACTGTGGCATCTAATGTGGGTTCTGAGCATAGTGATTCTTCTGAAGTACTCAAGATCACCCAGGCAGCCCCAATTGTTTTCAATGGTGGGGAAGAGGAGAGCTCCAAGGCTGAACACAATGCTCTTATTGATGATGGGTGGGAAATTTTTGACAAAGATGCAGAACTGGACTCTGGAGTTTTCTAA

Protein sequence

>Msa0124550

MGFNSVYRSLLDIFPQVDSRLLRAVAIEHSKDADMAAEETSNGFWHEASENFDQGRLVDVIVENLASSGVYHVLEMEQINVAEEAASMTNNGNGTSNNLNEEWVDFVPTAEDYDATICDTRHVLEKSETALVESEDSEVQTVSQVQGLTLNAKDIQTEFNTTLNAVDEIDENTTLGQYNPACSIDMLEETIDEAKTNKKTLFSSMESLINLMREVEHQEKLAEQANIAATTGGFDILDRVDEYQAMLVHAKEANDMHAGEIYGEKAILATELKELQSRLSSLSGERDESLAILDEMRQSLESRLAAAEMLRKAAELEKLEKEESARAALLEQEAMMEKVVQESRRLQQEAEENSKLREFLMDRGQVVDTLQGEISVICQDIRLLKEKFDANLPLSKSFTASQTSCILASSGSSHKTVASNVGSEHSDSSEVLKITQAAPIVFNGGEEESSKAEHNALIDDGWEIFDKDAELDSGVF*